Query 003160
Match_columns 843
No_of_seqs 379 out of 2854
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 8E-214 2E-218 1820.0 80.1 812 1-836 62-876 (877)
2 KOG0432 Valyl-tRNA synthetase 100.0 2E-198 3E-203 1642.4 70.7 822 1-838 104-994 (995)
3 PLN02943 aminoacyl-tRNA ligase 100.0 7E-188 1E-192 1697.0 89.1 838 1-842 117-957 (958)
4 PLN02381 valyl-tRNA synthetase 100.0 2E-186 4E-191 1690.6 85.5 825 1-841 157-1064(1066)
5 PTZ00419 valyl-tRNA synthetase 100.0 1E-185 2E-190 1697.4 87.1 832 1-839 89-994 (995)
6 PRK05729 valS valyl-tRNA synth 100.0 5E-185 1E-189 1673.4 86.6 805 1-837 65-874 (874)
7 TIGR00422 valS valyl-tRNA synt 100.0 3E-179 7E-184 1624.7 82.5 796 1-819 62-861 (861)
8 PRK14900 valS valyl-tRNA synth 100.0 8E-179 2E-183 1627.3 83.7 814 1-838 77-906 (1052)
9 PRK06039 ileS isoleucyl-tRNA s 100.0 5E-162 1E-166 1480.1 78.9 748 1-767 70-885 (975)
10 PTZ00427 isoleucine-tRNA ligas 100.0 2E-161 5E-166 1469.1 74.4 728 1-740 131-1017(1205)
11 PLN02882 aminoacyl-tRNA ligase 100.0 6E-158 1E-162 1446.6 75.6 725 1-740 67-891 (1159)
12 COG0060 IleS Isoleucyl-tRNA sy 100.0 1E-156 3E-161 1363.5 61.8 692 1-711 78-844 (933)
13 PRK05743 ileS isoleucyl-tRNA s 100.0 4E-155 9E-160 1408.1 69.4 708 1-735 78-852 (912)
14 PRK13804 ileS isoleucyl-tRNA s 100.0 2E-154 4E-159 1404.5 73.7 711 1-735 83-892 (961)
15 PLN02843 isoleucyl-tRNA synthe 100.0 3E-154 7E-159 1401.6 70.6 713 1-737 61-897 (974)
16 PRK13208 valS valyl-tRNA synth 100.0 1E-152 2E-157 1382.2 73.7 707 1-736 67-785 (800)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 2E-149 3E-154 1365.9 64.9 695 1-711 65-849 (861)
18 PRK12300 leuS leucyl-tRNA synt 100.0 4E-134 9E-139 1222.4 67.3 653 1-703 15-779 (897)
19 PLN02959 aminoacyl-tRNA ligase 100.0 3E-133 7E-138 1226.5 66.1 662 1-703 74-925 (1084)
20 TIGR00395 leuS_arch leucyl-tRN 100.0 2E-131 5E-136 1203.3 66.2 666 1-713 54-832 (938)
21 KOG0433 Isoleucyl-tRNA synthet 100.0 3E-130 6E-135 1072.2 56.2 650 1-676 84-818 (937)
22 PF00133 tRNA-synt_1: tRNA syn 100.0 1E-131 2E-136 1161.1 34.2 503 1-507 52-601 (601)
23 KOG0434 Isoleucyl-tRNA synthet 100.0 3E-126 7E-131 1028.0 46.9 724 2-740 68-879 (1070)
24 PRK00390 leuS leucyl-tRNA synt 100.0 4E-119 9E-124 1080.3 51.8 613 1-756 61-804 (805)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 9E-119 2E-123 1078.4 52.3 619 1-756 58-841 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 3E-117 6E-122 1064.5 53.5 616 1-757 140-957 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 7.1E-94 1.5E-98 831.4 44.8 554 1-671 63-747 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 7.3E-86 1.6E-90 716.5 36.1 564 1-670 86-795 (876)
29 PRK12268 methionyl-tRNA synthe 100.0 3.1E-81 6.8E-86 734.2 36.4 476 1-669 33-521 (556)
30 TIGR00398 metG methionyl-tRNA 100.0 2.6E-80 5.7E-85 722.3 38.7 460 1-656 28-503 (530)
31 cd00817 ValRS_core catalytic c 100.0 3.8E-80 8.2E-85 687.7 31.8 348 1-506 30-382 (382)
32 PLN02610 probable methionyl-tR 100.0 1.5E-78 3.2E-83 720.5 37.6 461 1-657 47-533 (801)
33 PRK00133 metG methionyl-tRNA s 100.0 2.4E-78 5.3E-83 718.6 38.3 455 1-656 31-503 (673)
34 KOG0437 Leucyl-tRNA synthetase 100.0 1.9E-78 4E-83 661.9 31.1 648 3-693 75-905 (1080)
35 PRK12267 methionyl-tRNA synthe 100.0 1.1E-77 2.5E-82 712.6 36.8 433 1-657 33-479 (648)
36 COG0143 MetG Methionyl-tRNA sy 100.0 1.8E-76 3.8E-81 667.2 34.9 459 1-657 34-513 (558)
37 PRK11893 methionyl-tRNA synthe 100.0 1.8E-73 3.9E-78 664.4 38.7 434 1-656 30-476 (511)
38 PLN02224 methionine-tRNA ligas 100.0 9.1E-73 2E-77 652.5 36.9 435 1-657 98-547 (616)
39 cd00818 IleRS_core catalytic c 100.0 5.4E-69 1.2E-73 588.6 29.0 307 1-506 30-338 (338)
40 KOG0436 Methionyl-tRNA synthet 100.0 1.5E-64 3.3E-69 523.8 27.1 440 1-657 68-528 (578)
41 cd00668 Ile_Leu_Val_MetRS_core 100.0 2E-58 4.4E-63 502.6 25.4 283 1-506 29-312 (312)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.3E-59 7.2E-64 518.3 11.9 346 1-528 28-390 (391)
43 cd00814 MetRS_core catalytic c 100.0 1E-52 2.3E-57 458.1 22.6 281 1-506 29-319 (319)
44 KOG1247 Methionyl-tRNA synthet 100.0 3.4E-51 7.3E-56 423.8 18.8 461 1-657 44-521 (567)
45 cd00812 LeuRS_core catalytic c 100.0 1.3E-48 2.9E-53 424.2 20.3 269 1-508 29-314 (314)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 4.8E-33 1E-37 316.5 28.9 156 421-607 220-376 (463)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.8E-30 4E-35 303.2 27.2 191 395-606 242-437 (651)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 9.3E-29 2E-33 280.6 23.6 152 421-596 219-371 (465)
49 PRK12418 cysteinyl-tRNA synthe 100.0 2E-27 4.3E-32 259.6 19.8 147 421-606 214-363 (384)
50 PRK14536 cysS cysteinyl-tRNA s 99.9 4.7E-26 1E-30 255.9 22.2 164 422-596 234-399 (490)
51 TIGR03447 mycothiol_MshC cyste 99.9 1.7E-26 3.8E-31 253.1 18.0 139 422-596 242-382 (411)
52 cd07961 Anticodon_Ia_Ile_ABEc 99.9 5.3E-26 1.2E-30 228.6 19.3 175 506-692 1-183 (183)
53 PLN02946 cysteine-tRNA ligase 99.9 2.5E-25 5.5E-30 252.2 19.5 165 421-606 277-443 (557)
54 cd07960 Anticodon_Ia_Ile_BEm A 99.9 1.4E-24 3E-29 217.6 20.4 175 506-691 1-179 (180)
55 PRK14534 cysS cysteinyl-tRNA s 99.9 2.9E-24 6.4E-29 240.0 21.9 157 422-596 234-392 (481)
56 PRK14535 cysS cysteinyl-tRNA s 99.9 1E-24 2.2E-29 247.8 17.8 144 422-596 447-607 (699)
57 PF13603 tRNA-synt_1_2: Leucyl 99.9 2.5E-24 5.5E-29 211.4 13.7 128 135-264 9-185 (185)
58 PF08264 Anticodon_1: Anticodo 99.9 3.9E-23 8.3E-28 201.8 15.9 147 562-710 1-153 (153)
59 cd00672 CysRS_core catalytic c 99.9 1.5E-23 3.2E-28 213.4 11.3 86 421-507 128-213 (213)
60 PRK01611 argS arginyl-tRNA syn 99.9 5E-20 1.1E-24 213.1 25.9 200 424-643 276-503 (507)
61 cd00674 LysRS_core_class_I cat 99.8 2.2E-20 4.8E-25 202.5 16.1 101 421-523 227-334 (353)
62 COG0215 CysS Cysteinyl-tRNA sy 99.8 4.3E-18 9.3E-23 186.3 17.1 147 422-597 222-369 (464)
63 cd07962 Anticodon_Ia_Val Antic 99.7 2.8E-16 6.2E-21 149.7 16.5 135 506-654 1-135 (135)
64 PRK00750 lysK lysyl-tRNA synth 99.7 2E-16 4.3E-21 181.7 15.2 86 421-508 234-321 (510)
65 cd07959 Anticodon_Ia_Leu_AEc A 99.6 2.3E-15 4.9E-20 139.8 14.5 116 506-654 1-117 (117)
66 PF01406 tRNA-synt_1e: tRNA sy 99.6 6.9E-16 1.5E-20 161.3 10.6 95 421-516 206-300 (300)
67 cd07957 Anticodon_Ia_Met Antic 99.6 1.1E-14 2.3E-19 137.6 14.2 95 558-654 34-129 (129)
68 cd07958 Anticodon_Ia_Leu_BEm A 99.6 2.1E-14 4.5E-19 133.2 13.3 117 506-654 1-117 (117)
69 KOG2007 Cysteinyl-tRNA synthet 99.6 3.3E-14 7.2E-19 153.3 14.7 169 422-609 259-428 (586)
70 PF10458 Val_tRNA-synt_C: Valy 99.5 2.7E-14 5.9E-19 116.9 7.9 66 771-836 1-66 (66)
71 TIGR00456 argS arginyl-tRNA sy 99.4 1.3E-12 2.8E-17 153.2 16.8 202 424-641 331-560 (566)
72 TIGR00467 lysS_arch lysyl-tRNA 99.3 5.5E-12 1.2E-16 143.9 12.1 94 427-523 231-328 (515)
73 cd07375 Anticodon_Ia_like Anti 99.3 6.3E-11 1.4E-15 109.4 13.8 116 509-643 2-117 (117)
74 PRK12451 arginyl-tRNA syntheta 98.8 8.2E-08 1.8E-12 112.6 18.5 192 424-640 328-555 (562)
75 PLN02286 arginine-tRNA ligase 98.8 5.7E-07 1.2E-11 105.6 21.6 204 423-641 330-570 (576)
76 COG0018 ArgS Arginyl-tRNA synt 98.7 8.4E-07 1.8E-11 102.9 21.3 205 420-644 332-574 (577)
77 cd00671 ArgRS_core catalytic c 98.5 1.2E-07 2.5E-12 97.6 6.7 95 1-117 29-124 (212)
78 PF01921 tRNA-synt_1f: tRNA sy 98.0 1.9E-05 4.1E-10 85.6 8.1 87 421-509 234-323 (360)
79 PF00750 tRNA-synt_1d: tRNA sy 97.3 0.00031 6.8E-09 78.0 6.0 86 420-508 236-354 (354)
80 COG1384 LysS Lysyl-tRNA synthe 97.2 0.00033 7.2E-09 78.2 4.6 61 446-508 256-319 (521)
81 PLN02563 aminoacyl-tRNA ligase 96.3 0.007 1.5E-07 75.2 7.6 79 252-333 210-302 (963)
82 PRK13354 tyrosyl-tRNA syntheta 95.8 0.0089 1.9E-07 67.4 4.6 57 420-481 185-243 (410)
83 COG0495 LeuS Leucyl-tRNA synth 95.8 0.014 3.1E-07 70.2 6.2 77 256-334 137-228 (814)
84 TIGR00396 leuS_bact leucyl-tRN 95.8 0.015 3.2E-07 71.9 6.5 80 253-334 129-223 (842)
85 cd00395 Tyr_Trp_RS_core cataly 95.7 0.024 5.2E-07 60.6 7.2 55 420-478 152-208 (273)
86 cd07956 Anticodon_Ia_Arg Antic 95.5 0.14 3.1E-06 49.8 11.2 136 485-640 2-149 (156)
87 cd00805 TyrRS_core catalytic c 95.4 0.023 4.9E-07 60.7 5.5 53 422-478 152-205 (269)
88 cd00418 GlxRS_core catalytic c 95.2 0.096 2.1E-06 54.1 9.2 74 422-500 110-185 (230)
89 cd00802 class_I_aaRS_core cata 94.9 0.016 3.4E-07 55.7 2.3 52 1-68 26-77 (143)
90 cd00802 class_I_aaRS_core cata 94.8 0.044 9.5E-07 52.5 5.3 50 422-473 94-143 (143)
91 PRK05912 tyrosyl-tRNA syntheta 94.8 0.029 6.2E-07 63.4 4.5 72 420-497 187-259 (408)
92 PRK00390 leuS leucyl-tRNA synt 94.7 0.056 1.2E-06 66.7 7.0 102 252-355 131-247 (805)
93 TIGR00464 gltX_bact glutamyl-t 94.6 0.12 2.6E-06 59.6 8.9 71 422-496 198-269 (470)
94 PF00579 tRNA-synt_1b: tRNA sy 94.5 0.049 1.1E-06 59.0 5.1 62 420-481 148-212 (292)
95 PRK12556 tryptophanyl-tRNA syn 94.1 0.077 1.7E-06 58.2 5.8 60 419-479 147-213 (332)
96 PRK14900 valS valyl-tRNA synth 93.9 0.061 1.3E-06 68.1 5.2 60 770-830 845-905 (1052)
97 KOG0435 Leucyl-tRNA synthetase 93.7 0.064 1.4E-06 61.7 4.2 76 255-333 159-249 (876)
98 PRK12284 tryptophanyl-tRNA syn 93.6 0.098 2.1E-06 58.6 5.5 61 420-481 147-215 (431)
99 PRK04156 gltX glutamyl-tRNA sy 93.3 0.14 3.1E-06 59.6 6.3 67 454-521 325-409 (567)
100 PRK08560 tyrosyl-tRNA syntheta 93.1 0.11 2.4E-06 57.1 4.8 58 420-481 167-228 (329)
101 TIGR00233 trpS tryptophanyl-tR 92.5 0.082 1.8E-06 58.0 2.8 85 420-511 138-233 (328)
102 cd00808 GluRS_core catalytic c 91.8 0.69 1.5E-05 48.2 8.4 76 421-500 118-194 (239)
103 PRK01406 gltX glutamyl-tRNA sy 91.6 0.65 1.4E-05 53.7 8.8 72 423-498 209-281 (476)
104 COG0162 TyrS Tyrosyl-tRNA synt 91.2 0.19 4.2E-06 56.1 3.8 53 421-477 180-233 (401)
105 COG0180 TrpS Tryptophanyl-tRNA 90.9 0.18 4E-06 54.2 3.3 59 421-481 145-212 (314)
106 PTZ00126 tyrosyl-tRNA syntheta 90.7 0.3 6.5E-06 54.6 4.8 70 420-497 209-282 (383)
107 PRK12285 tryptophanyl-tRNA syn 90.3 0.21 4.6E-06 55.6 3.2 70 421-497 203-276 (368)
108 cd00806 TrpRS_core catalytic c 90.2 0.28 6.1E-06 52.7 4.0 71 420-497 136-216 (280)
109 PRK12282 tryptophanyl-tRNA syn 90.2 0.28 6.1E-06 53.9 4.0 62 419-481 140-209 (333)
110 PF15188 CCDC-167: Coiled-coil 89.9 2.2 4.8E-05 36.5 8.2 62 772-837 3-64 (85)
111 TIGR00234 tyrS tyrosyl-tRNA sy 89.7 0.43 9.3E-06 53.4 5.0 63 414-481 171-234 (377)
112 PRK00927 tryptophanyl-tRNA syn 87.7 0.42 9.1E-06 52.7 3.2 72 420-497 137-220 (333)
113 cd00807 GlnRS_core catalytic c 86.7 2.9 6.3E-05 43.4 8.4 64 454-518 151-232 (238)
114 PF02388 FemAB: FemAB family; 85.5 2 4.4E-05 48.8 7.3 59 770-839 238-296 (406)
115 PRK12283 tryptophanyl-tRNA syn 84.8 0.36 7.8E-06 53.7 0.8 36 458-498 254-289 (398)
116 cd00671 ArgRS_core catalytic c 82.2 2.7 5.8E-05 43.2 6.0 49 424-474 162-212 (212)
117 PRK14895 gltX glutamyl-tRNA sy 82.1 6.7 0.00015 45.5 9.6 87 422-512 197-286 (513)
118 PRK12410 glutamylglutaminyl-tR 81.7 5.3 0.00011 45.4 8.4 58 454-512 221-280 (433)
119 cd09287 GluRS_non_core catalyt 79.4 6 0.00013 41.3 7.3 65 454-519 153-235 (240)
120 PLN03233 putative glutamate-tR 79.3 4.2 9.1E-05 47.2 6.7 65 457-521 235-317 (523)
121 PRK10636 putative ABC transpor 79.3 7.6 0.00016 47.0 9.4 64 773-836 562-625 (638)
122 PF07106 TBPIP: Tat binding pr 79.2 16 0.00035 36.0 10.1 62 771-837 76-137 (169)
123 PLN02486 aminoacyl-tRNA ligase 78.3 2.1 4.5E-05 48.0 3.8 65 424-497 222-290 (383)
124 PF14257 DUF4349: Domain of un 78.3 9.8 0.00021 40.4 8.9 67 770-841 128-194 (262)
125 PF03962 Mnd1: Mnd1 family; I 78.1 9.7 0.00021 38.2 8.2 78 759-837 52-131 (188)
126 PRK12558 glutamyl-tRNA synthet 76.5 7.6 0.00017 44.3 7.7 59 454-513 226-287 (445)
127 PF07061 Swi5: Swi5; InterPro 76.5 22 0.00048 30.5 8.7 61 772-838 5-65 (83)
128 PTZ00348 tyrosyl-tRNA syntheta 73.3 3.6 7.7E-05 49.4 4.2 58 420-481 174-236 (682)
129 PF11336 DUF3138: Protein of u 72.2 13 0.00028 41.3 7.6 62 773-834 24-108 (514)
130 PF14282 FlxA: FlxA-like prote 72.0 23 0.0005 31.9 8.2 57 771-837 16-72 (106)
131 PRK05347 glutaminyl-tRNA synth 71.9 8.3 0.00018 45.0 6.6 69 450-521 255-341 (554)
132 PRK12558 glutamyl-tRNA synthet 71.4 11 0.00024 43.0 7.5 80 15-107 11-97 (445)
133 TIGR00440 glnS glutaminyl-tRNA 71.1 8.4 0.00018 44.8 6.4 59 462-520 235-311 (522)
134 PF05746 DALR_1: DALR anticodo 71.1 28 0.00061 31.7 8.9 78 559-640 32-112 (119)
135 PF05531 NPV_P10: Nucleopolyhe 67.5 44 0.00095 28.0 8.1 58 772-840 9-66 (75)
136 TIGR00463 gltX_arch glutamyl-t 66.6 13 0.00029 43.6 6.9 68 454-521 315-400 (560)
137 PF05008 V-SNARE: Vesicle tran 65.9 50 0.0011 27.8 8.7 58 771-834 22-79 (79)
138 PRK11147 ABC transporter ATPas 64.0 27 0.00059 42.2 9.3 63 774-837 568-630 (635)
139 KOG2911 Uncharacterized conser 62.9 43 0.00094 37.4 9.4 68 770-839 236-303 (439)
140 KOG1195 Arginyl-tRNA synthetas 62.3 95 0.0021 35.6 12.0 127 467-604 366-525 (567)
141 COG3879 Uncharacterized protei 61.8 25 0.00054 36.5 7.0 52 770-831 53-104 (247)
142 COG3750 Uncharacterized protei 61.8 37 0.0008 28.4 6.5 61 775-835 22-82 (85)
143 PTZ00402 glutamyl-tRNA synthet 61.5 19 0.00041 42.5 6.9 67 454-521 275-359 (601)
144 PTZ00437 glutaminyl-tRNA synth 60.7 9.6 0.00021 44.6 4.2 62 462-523 280-359 (574)
145 PRK11020 hypothetical protein; 60.6 59 0.0013 29.3 8.1 51 771-830 2-52 (118)
146 PF06696 Strep_SA_rep: Strepto 59.4 21 0.00045 23.2 3.7 21 815-835 4-24 (25)
147 PRK03947 prefoldin subunit alp 59.1 1.6E+02 0.0035 27.8 13.4 46 752-797 68-117 (140)
148 KOG3990 Uncharacterized conser 58.3 40 0.00087 34.6 7.6 63 771-837 229-295 (305)
149 KOG2185 Predicted RNA-processi 58.2 50 0.0011 36.5 8.7 58 770-838 416-473 (486)
150 PLN02886 aminoacyl-tRNA ligase 58.1 12 0.00027 41.8 4.4 61 420-481 183-267 (389)
151 PF07544 Med9: RNA polymerase 58.0 33 0.00072 29.4 6.1 60 770-840 24-83 (83)
152 KOG3564 GTPase-activating prot 57.2 30 0.00065 39.0 7.0 71 770-840 38-108 (604)
153 cd00089 HR1 Protein kinase C-r 56.3 78 0.0017 26.2 8.0 65 772-838 7-71 (72)
154 PRK13729 conjugal transfer pil 56.3 34 0.00073 39.1 7.4 25 813-837 101-125 (475)
155 COG3883 Uncharacterized protei 55.7 47 0.001 35.0 7.9 65 771-835 35-99 (265)
156 COG0018 ArgS Arginyl-tRNA synt 55.5 27 0.00058 41.4 6.9 57 55-115 237-297 (577)
157 PLN02627 glutamyl-tRNA synthet 55.2 38 0.00081 39.6 7.8 58 454-512 279-340 (535)
158 COG3883 Uncharacterized protei 54.9 51 0.0011 34.8 8.0 67 772-838 43-110 (265)
159 PF04102 SlyX: SlyX; InterPro 54.8 57 0.0012 26.9 6.8 51 772-836 2-52 (69)
160 PF03962 Mnd1: Mnd1 family; I 54.5 58 0.0013 32.7 8.2 61 774-837 103-163 (188)
161 PRK14703 glutaminyl-tRNA synth 54.4 40 0.00086 41.4 8.2 67 454-521 260-344 (771)
162 PF02185 HR1: Hr1 repeat; Int 54.2 85 0.0018 25.8 7.8 63 775-840 2-64 (70)
163 PRK11637 AmiB activator; Provi 54.2 31 0.00068 39.5 7.1 23 773-795 46-68 (428)
164 PF07407 Seadorna_VP6: Seadorn 53.6 37 0.0008 36.3 6.7 63 766-840 31-93 (420)
165 COG4372 Uncharacterized protei 52.9 52 0.0011 36.1 7.8 66 772-837 215-280 (499)
166 COG1730 GIM5 Predicted prefold 52.8 2.2E+02 0.0047 27.3 16.2 48 750-797 66-117 (145)
167 TIGR00414 serS seryl-tRNA synt 52.7 28 0.00061 39.7 6.4 33 767-799 30-62 (418)
168 PF11559 ADIP: Afadin- and alp 52.7 46 0.001 32.0 7.0 64 773-836 65-128 (151)
169 PF00750 tRNA-synt_1d: tRNA sy 52.6 13 0.00029 41.3 3.7 51 55-108 143-194 (354)
170 COG2348 Peptidoglycan interpep 52.4 32 0.0007 38.8 6.5 63 762-833 235-297 (418)
171 PRK11637 AmiB activator; Provi 52.4 34 0.00074 39.2 7.0 19 781-799 68-86 (428)
172 PF02403 Seryl_tRNA_N: Seryl-t 52.1 18 0.0004 32.5 3.9 69 767-835 29-100 (108)
173 PRK05431 seryl-tRNA synthetase 51.8 24 0.00053 40.3 5.6 68 767-834 28-98 (425)
174 PRK00736 hypothetical protein; 51.7 1.2E+02 0.0025 25.0 8.1 51 772-836 3-53 (68)
175 PRK10884 SH3 domain-containing 51.3 85 0.0018 32.0 8.8 28 771-798 90-117 (206)
176 COG1937 Uncharacterized protei 51.3 70 0.0015 27.9 7.0 32 772-803 4-35 (89)
177 PF08287 DASH_Spc19: Spc19; I 51.2 63 0.0014 31.3 7.5 64 772-835 73-153 (153)
178 TIGR02894 DNA_bind_RsfA transc 51.0 84 0.0018 30.4 8.1 56 772-841 102-157 (161)
179 PLN02859 glutamine-tRNA ligase 50.9 21 0.00045 43.4 5.1 60 461-520 492-570 (788)
180 PF10458 Val_tRNA-synt_C: Valy 50.8 30 0.00065 28.2 4.5 60 779-838 2-61 (66)
181 PRK15039 transcriptional repre 50.5 72 0.0016 27.9 7.0 31 773-803 5-35 (90)
182 PRK02793 phi X174 lysis protei 50.4 1.1E+02 0.0025 25.4 7.9 52 772-837 6-57 (72)
183 PF03961 DUF342: Protein of un 50.3 44 0.00095 38.6 7.5 67 771-837 331-403 (451)
184 PF10779 XhlA: Haemolysin XhlA 50.2 1.1E+02 0.0025 25.2 8.0 52 771-836 3-54 (71)
185 cd00890 Prefoldin Prefoldin is 49.7 2.1E+02 0.0046 26.3 12.9 45 752-796 61-109 (129)
186 PF02583 Trns_repr_metal: Meta 49.1 75 0.0016 27.4 6.9 30 774-803 2-31 (85)
187 PF10805 DUF2730: Protein of u 49.0 95 0.0021 28.0 7.9 59 773-837 34-93 (106)
188 PF13851 GAS: Growth-arrest sp 49.0 59 0.0013 33.0 7.3 56 770-836 51-106 (201)
189 PRK13182 racA polar chromosome 48.7 87 0.0019 31.1 8.2 65 772-838 83-147 (175)
190 PRK00295 hypothetical protein; 48.4 1.5E+02 0.0032 24.4 8.2 51 772-836 3-53 (68)
191 PRK11352 regulator protein Frm 48.3 79 0.0017 27.7 7.0 30 774-803 6-35 (91)
192 PRK12451 arginyl-tRNA syntheta 47.5 44 0.00096 39.8 7.1 51 56-110 233-283 (562)
193 PLN02320 seryl-tRNA synthetase 47.4 35 0.00075 39.6 5.9 33 767-799 93-125 (502)
194 PLN02907 glutamate-tRNA ligase 47.1 63 0.0014 39.6 8.4 67 454-521 435-519 (722)
195 PRK01406 gltX glutamyl-tRNA sy 47.0 41 0.00088 39.1 6.5 117 15-144 13-160 (476)
196 PF00846 Hanta_nucleocap: Hant 46.9 56 0.0012 35.9 6.9 61 775-835 3-68 (428)
197 PF14389 Lzipper-MIP1: Leucine 46.4 1.8E+02 0.0039 25.3 8.9 66 771-837 12-82 (88)
198 PRK04325 hypothetical protein; 46.2 1.4E+02 0.0031 25.0 7.9 51 772-836 7-57 (74)
199 PF14712 Snapin_Pallidin: Snap 45.7 1.2E+02 0.0026 26.3 7.9 66 771-837 18-85 (92)
200 TIGR03752 conj_TIGR03752 integ 45.7 64 0.0014 36.8 7.5 66 771-836 70-136 (472)
201 COG0008 GlnS Glutamyl- and glu 45.3 39 0.00085 39.0 6.0 86 10-107 10-105 (472)
202 PF08657 DASH_Spc34: DASH comp 45.2 40 0.00087 35.6 5.6 58 771-828 191-258 (259)
203 PLN02678 seryl-tRNA synthetase 44.8 35 0.00075 39.2 5.4 68 767-834 33-103 (448)
204 PF08317 Spc7: Spc7 kinetochor 44.5 1E+02 0.0022 33.9 8.9 17 779-795 182-198 (325)
205 PRK10884 SH3 domain-containing 44.2 92 0.002 31.8 7.8 21 771-791 97-117 (206)
206 COG2433 Uncharacterized conser 44.1 61 0.0013 37.9 7.1 69 771-839 440-511 (652)
207 PF07989 Microtub_assoc: Micro 44.1 1.5E+02 0.0032 25.0 7.7 65 771-836 4-70 (75)
208 KOG2623 Tyrosyl-tRNA synthetas 42.9 24 0.00051 38.9 3.5 55 420-481 226-286 (467)
209 PF05524 PEP-utilisers_N: PEP- 42.7 51 0.0011 30.4 5.4 29 770-798 31-59 (123)
210 PRK02119 hypothetical protein; 42.3 1.7E+02 0.0037 24.4 7.8 52 771-836 6-57 (73)
211 PF04420 CHD5: CHD5-like prote 42.1 1.1E+02 0.0025 29.8 7.9 50 779-834 38-91 (161)
212 PF11932 DUF3450: Protein of u 41.9 74 0.0016 33.5 7.1 64 774-837 42-105 (251)
213 TIGR00999 8a0102 Membrane Fusi 41.6 1.1E+02 0.0025 32.0 8.6 63 771-837 20-82 (265)
214 TIGR00293 prefoldin, archaeal 41.4 2.9E+02 0.0062 25.5 12.3 47 751-797 59-109 (126)
215 TIGR02338 gimC_beta prefoldin, 41.4 61 0.0013 29.4 5.5 26 770-795 63-88 (110)
216 PRK04406 hypothetical protein; 41.0 1.8E+02 0.0039 24.5 7.7 51 772-836 9-59 (75)
217 PRK13694 hypothetical protein; 40.9 73 0.0016 27.1 5.2 61 775-835 20-80 (83)
218 COG1579 Zn-ribbon protein, pos 40.9 1.1E+02 0.0023 32.0 7.7 66 771-837 56-124 (239)
219 cd09287 GluRS_non_core catalyt 40.4 45 0.00098 34.8 5.0 86 12-106 7-97 (240)
220 TIGR00456 argS arginyl-tRNA sy 40.2 48 0.001 39.5 5.9 49 56-107 234-283 (566)
221 PF02996 Prefoldin: Prefoldin 40.0 2.9E+02 0.0062 25.1 11.1 38 758-795 57-98 (120)
222 cd00938 HisRS_RNA HisRS_RNA bi 39.6 1.1E+02 0.0023 23.0 5.3 22 804-825 20-41 (45)
223 PF03938 OmpH: Outer membrane 39.6 1.7E+02 0.0037 28.1 8.8 55 772-828 41-95 (158)
224 TIGR03185 DNA_S_dndD DNA sulfu 39.6 1.1E+02 0.0024 37.1 9.1 59 772-836 389-448 (650)
225 TIGR02420 dksA RNA polymerase- 39.5 1.8E+02 0.0039 26.3 8.3 63 774-836 8-76 (110)
226 PRK05710 glutamyl-Q tRNA(Asp) 39.4 52 0.0011 35.6 5.5 90 7-107 3-101 (299)
227 PF12761 End3: Actin cytoskele 39.4 80 0.0017 31.7 6.3 51 771-822 93-144 (195)
228 PRK09343 prefoldin subunit bet 39.3 72 0.0016 29.5 5.7 46 770-829 67-112 (121)
229 TIGR00464 gltX_bact glutamyl-t 39.2 64 0.0014 37.4 6.6 118 13-143 8-149 (470)
230 PF07889 DUF1664: Protein of u 39.0 82 0.0018 29.4 5.9 60 778-837 58-117 (126)
231 PF07798 DUF1640: Protein of u 39.0 98 0.0021 30.7 7.0 27 774-800 73-99 (177)
232 PF04201 TPD52: Tumour protein 38.7 1.5E+02 0.0033 28.7 7.8 27 772-798 27-53 (162)
233 PF07851 TMPIT: TMPIT-like pro 38.5 89 0.0019 34.2 7.0 26 774-799 4-29 (330)
234 cd00939 MetRS_RNA MetRS_RNA bi 38.2 1.3E+02 0.0028 22.7 5.6 25 804-828 18-42 (45)
235 PLN02286 arginine-tRNA ligase 37.9 74 0.0016 38.0 7.0 48 56-109 238-286 (576)
236 PF06120 Phage_HK97_TLTM: Tail 37.9 1.4E+02 0.0029 32.4 8.2 62 771-834 85-152 (301)
237 PF04977 DivIC: Septum formati 37.5 59 0.0013 27.1 4.6 30 770-799 20-49 (80)
238 KOG2264 Exostosin EXT1L [Signa 37.2 92 0.002 35.9 7.0 58 773-837 92-149 (907)
239 PF01920 Prefoldin_2: Prefoldi 37.1 1.6E+02 0.0034 26.0 7.6 37 801-837 54-90 (106)
240 PF03357 Snf7: Snf7; InterPro 37.0 1.4E+02 0.0031 28.9 7.9 64 772-837 6-69 (171)
241 cd00584 Prefoldin_alpha Prefol 36.8 3.4E+02 0.0075 25.0 11.2 41 755-795 64-108 (129)
242 PF09766 FimP: Fms-interacting 36.8 1.3E+02 0.0028 33.5 8.3 53 775-841 102-154 (355)
243 PF11068 YlqD: YlqD protein; 36.5 1.8E+02 0.004 27.3 7.9 65 772-838 25-89 (131)
244 PRK00846 hypothetical protein; 36.4 2.7E+02 0.0057 23.7 8.0 53 771-837 10-62 (77)
245 PRK06798 fliD flagellar cappin 36.0 92 0.002 35.8 7.1 57 774-840 379-435 (440)
246 PF12718 Tropomyosin_1: Tropom 35.9 1E+02 0.0022 29.4 6.3 61 771-835 32-99 (143)
247 PF00749 tRNA-synt_1c: tRNA sy 35.7 66 0.0014 35.2 5.7 48 57-107 50-97 (314)
248 PHA00728 hypothetical protein 35.5 56 0.0012 29.6 4.0 29 773-801 4-32 (151)
249 PF06476 DUF1090: Protein of u 34.9 1.4E+02 0.0031 27.3 6.8 48 771-827 67-114 (115)
250 PF07106 TBPIP: Tat binding pr 34.8 90 0.002 30.6 6.0 55 771-830 83-137 (169)
251 KOG0995 Centromere-associated 34.8 1.7E+02 0.0037 34.2 8.7 62 772-837 299-360 (581)
252 KOG2144 Tyrosyl-tRNA synthetas 34.6 18 0.00039 38.2 1.0 53 419-475 175-229 (360)
253 TIGR01730 RND_mfp RND family e 34.3 1.9E+02 0.0042 31.1 9.2 58 776-837 73-130 (322)
254 PLN02627 glutamyl-tRNA synthet 34.0 91 0.002 36.6 6.6 116 15-143 54-201 (535)
255 PF10073 DUF2312: Uncharacteri 33.6 1.1E+02 0.0024 25.7 5.1 59 775-833 12-70 (74)
256 PF09755 DUF2046: Uncharacteri 33.5 1.2E+02 0.0026 32.8 6.8 55 777-837 109-163 (310)
257 PRK03947 prefoldin subunit alp 33.2 2E+02 0.0044 27.1 8.0 37 802-838 87-123 (140)
258 PF12329 TMF_DNA_bd: TATA elem 33.1 2.9E+02 0.0063 23.1 8.0 16 774-789 12-27 (74)
259 PF05377 FlaC_arch: Flagella a 32.7 1.9E+02 0.0041 22.8 6.0 22 814-835 19-40 (55)
260 PF05278 PEARLI-4: Arabidopsis 32.5 2E+02 0.0043 30.5 8.2 52 773-838 206-257 (269)
261 PF01920 Prefoldin_2: Prefoldi 32.4 2.2E+02 0.0047 25.1 7.7 25 771-795 59-83 (106)
262 COG1163 DRG Predicted GTPase [ 32.1 68 0.0015 34.9 4.8 41 780-828 5-45 (365)
263 PF03961 DUF342: Protein of un 32.0 1.1E+02 0.0023 35.5 6.9 65 770-835 337-408 (451)
264 PF04518 Effector_1: Effector 31.6 2.2E+02 0.0047 31.8 8.7 68 772-839 205-272 (379)
265 PF00458 WHEP-TRS: WHEP-TRS do 31.5 2.4E+02 0.0052 22.3 6.5 41 780-828 2-42 (56)
266 cd01109 HTH_YyaN Helix-Turn-He 31.4 1.4E+02 0.003 27.1 6.2 61 780-840 50-110 (113)
267 PHA02629 A-type inclusion body 31.4 2E+02 0.0043 22.0 5.7 51 790-840 5-57 (61)
268 PF02970 TBCA: Tubulin binding 31.4 2.5E+02 0.0053 24.5 7.4 63 775-838 8-74 (90)
269 COG0216 PrfA Protein chain rel 31.1 2.5E+02 0.0054 30.7 8.7 50 781-835 53-102 (363)
270 KOG2391 Vacuolar sorting prote 30.9 1.9E+02 0.0042 31.4 7.8 26 771-796 215-240 (365)
271 PF05529 Bap31: B-cell recepto 30.7 2.1E+02 0.0045 28.7 8.0 63 774-836 125-188 (192)
272 PF00749 tRNA-synt_1c: tRNA sy 30.6 89 0.0019 34.2 5.6 52 422-477 200-252 (314)
273 PTZ00437 glutaminyl-tRNA synth 30.0 94 0.002 36.6 5.9 47 57-107 100-146 (574)
274 PRK10636 putative ABC transpor 29.9 92 0.002 37.8 6.2 61 776-837 558-619 (638)
275 PF12325 TMF_TATA_bd: TATA ele 29.9 2.8E+02 0.006 25.7 7.8 22 774-795 37-58 (120)
276 cd00807 GlnRS_core catalytic c 29.8 79 0.0017 33.0 4.8 84 12-106 7-95 (238)
277 PF06428 Sec2p: GDP/GTP exchan 29.8 1.3E+02 0.0029 26.8 5.5 57 773-835 7-63 (100)
278 PF04568 IATP: Mitochondrial A 29.6 1E+02 0.0022 27.6 4.7 29 810-838 66-98 (100)
279 PRK05710 glutamyl-Q tRNA(Asp) 29.4 84 0.0018 34.1 5.1 42 454-499 222-263 (299)
280 PF10153 DUF2361: Uncharacteri 29.1 1.8E+02 0.0039 26.7 6.3 41 786-830 2-42 (114)
281 KOG3647 Predicted coiled-coil 29.1 1.5E+02 0.0033 31.0 6.4 50 779-828 110-159 (338)
282 PF11853 DUF3373: Protein of u 29.0 35 0.00076 39.2 2.2 29 768-796 25-53 (489)
283 KOG3433 Protein involved in me 29.0 2.1E+02 0.0046 28.3 7.0 67 770-836 77-143 (203)
284 PLN03233 putative glutamate-tR 28.8 88 0.0019 36.6 5.4 82 15-107 20-106 (523)
285 PRK12410 glutamylglutaminyl-tR 28.7 83 0.0018 36.0 5.1 80 15-106 8-93 (433)
286 PRK00591 prfA peptide chain re 28.3 1.5E+02 0.0034 32.9 6.9 25 779-803 4-28 (359)
287 PTZ00419 valyl-tRNA synthetase 28.1 73 0.0016 40.8 5.1 64 776-839 924-987 (995)
288 PF10653 Phage-A118_gp45: Prot 28.0 56 0.0012 24.8 2.4 32 793-826 22-53 (62)
289 PTZ00402 glutamyl-tRNA synthet 28.0 91 0.002 37.0 5.4 80 15-105 61-146 (601)
290 KOG0977 Nuclear envelope prote 27.9 1.4E+02 0.003 35.0 6.6 29 771-799 103-131 (546)
291 TIGR03838 queuosine_YadB gluta 27.9 49 0.0011 35.3 3.0 83 14-107 8-96 (272)
292 PRK04156 gltX glutamyl-tRNA sy 27.8 82 0.0018 37.3 5.0 47 57-107 152-198 (567)
293 PHA02109 hypothetical protein 27.8 1E+02 0.0023 29.8 4.7 34 766-799 185-218 (233)
294 PTZ00446 vacuolar sorting prot 27.7 3E+02 0.0064 27.7 8.2 66 771-838 31-96 (191)
295 TIGR03838 queuosine_YadB gluta 27.6 84 0.0018 33.6 4.7 23 454-476 215-237 (272)
296 KOG0432 Valyl-tRNA synthetase 27.6 2.7E+02 0.0058 34.4 9.0 64 428-511 514-582 (995)
297 PRK13729 conjugal transfer pil 27.6 1.8E+02 0.004 33.4 7.4 22 816-837 97-118 (475)
298 PF04918 DltD_M: DltD central 27.5 28 0.0006 34.1 1.0 18 285-302 23-40 (163)
299 PTZ00009 heat shock 70 kDa pro 27.4 2.1E+02 0.0045 34.8 8.6 57 781-837 539-603 (653)
300 PF06305 DUF1049: Protein of u 27.3 54 0.0012 26.6 2.5 23 771-793 45-67 (68)
301 PF11559 ADIP: Afadin- and alp 27.1 1.9E+02 0.0041 27.7 6.7 27 773-799 58-84 (151)
302 KOG4426 Arginyl-tRNA synthetas 26.9 6.6E+02 0.014 28.5 11.1 35 450-484 429-463 (656)
303 PF08317 Spc7: Spc7 kinetochor 26.9 1.5E+02 0.0032 32.7 6.6 23 810-832 245-267 (325)
304 PF12718 Tropomyosin_1: Tropom 26.9 2.1E+02 0.0045 27.4 6.8 27 772-798 47-73 (143)
305 COG1382 GimC Prefoldin, chaper 26.6 1.3E+02 0.0028 27.8 4.9 59 756-828 49-110 (119)
306 KOG2129 Uncharacterized conser 26.5 1.9E+02 0.0042 32.1 7.0 21 815-835 277-297 (552)
307 PHA03395 p10 fibrous body prot 26.5 4.3E+02 0.0093 22.9 7.7 58 772-840 9-66 (87)
308 smart00787 Spc7 Spc7 kinetocho 26.5 1.5E+02 0.0032 32.4 6.4 25 810-834 240-264 (312)
309 TIGR01010 BexC_CtrB_KpsE polys 26.4 2.8E+02 0.006 30.9 8.8 59 773-836 176-234 (362)
310 cd00584 Prefoldin_alpha Prefol 26.4 3.9E+02 0.0084 24.7 8.5 38 802-839 80-117 (129)
311 cd04787 HTH_HMRTR_unk Helix-Tu 26.3 2.2E+02 0.0047 26.7 6.8 65 775-839 45-109 (133)
312 PRK11020 hypothetical protein; 26.0 1.6E+02 0.0036 26.6 5.3 50 779-837 3-52 (118)
313 PF09278 MerR-DNA-bind: MerR, 26.0 1.8E+02 0.004 23.1 5.5 54 784-837 11-64 (65)
314 cd04786 HTH_MerR-like_sg7 Heli 25.8 2.2E+02 0.0047 26.7 6.6 64 775-839 45-108 (131)
315 PF00435 Spectrin: Spectrin re 25.8 4.1E+02 0.0089 22.5 9.5 59 776-836 3-61 (105)
316 cd01106 HTH_TipAL-Mta Helix-Tu 25.8 2.7E+02 0.0058 24.7 7.0 52 782-839 52-103 (103)
317 PF10186 Atg14: UV radiation r 25.6 1.9E+02 0.0041 31.0 7.2 24 811-834 114-137 (302)
318 PRK05729 valS valyl-tRNA synth 25.5 99 0.0022 39.0 5.5 64 776-839 806-869 (874)
319 KOG4603 TBP-1 interacting prot 25.3 3E+02 0.0064 26.9 7.2 26 812-837 119-144 (201)
320 cd00632 Prefoldin_beta Prefold 25.1 2.6E+02 0.0057 24.9 6.8 46 771-830 60-105 (105)
321 PF12329 TMF_DNA_bd: TATA elem 24.9 4.1E+02 0.0089 22.2 8.1 53 772-831 17-69 (74)
322 PF04977 DivIC: Septum formati 24.9 63 0.0014 27.0 2.6 23 771-793 28-50 (80)
323 smart00836 DALR_1 DALR anticod 24.8 4.7E+02 0.01 23.6 8.7 78 560-641 36-116 (122)
324 PF08614 ATG16: Autophagy prot 24.7 87 0.0019 31.6 4.0 21 779-799 114-134 (194)
325 COG2825 HlpA Outer membrane pr 24.7 3E+02 0.0066 27.1 7.6 35 768-802 45-79 (170)
326 PF02403 Seryl_tRNA_N: Seryl-t 24.7 3.5E+02 0.0077 24.1 7.6 66 772-837 27-95 (108)
327 PF04156 IncA: IncA protein; 24.6 2.3E+02 0.005 28.2 7.1 65 772-836 86-150 (191)
328 PF10779 XhlA: Haemolysin XhlA 24.5 2.3E+02 0.0049 23.4 5.8 46 786-838 4-49 (71)
329 PRK05431 seryl-tRNA synthetase 24.4 2.1E+02 0.0046 32.7 7.5 63 775-837 29-94 (425)
330 COG4942 Membrane-bound metallo 24.4 1.9E+02 0.0042 32.7 6.8 26 772-797 43-68 (420)
331 PLN02943 aminoacyl-tRNA ligase 24.4 85 0.0019 40.0 4.7 65 775-839 883-947 (958)
332 PRK09039 hypothetical protein; 24.2 2.9E+02 0.0063 30.6 8.3 53 772-838 142-195 (343)
333 TIGR02231 conserved hypothetic 23.9 2.6E+02 0.0056 33.0 8.4 20 775-794 72-91 (525)
334 smart00435 TOPEUc DNA Topoisom 23.9 2.7E+02 0.006 31.2 7.8 24 774-797 277-300 (391)
335 cd00890 Prefoldin Prefoldin is 23.8 4.7E+02 0.01 23.8 8.6 38 800-837 78-115 (129)
336 PF09403 FadA: Adhesion protei 23.6 3.9E+02 0.0084 25.0 7.6 62 777-839 62-123 (126)
337 KOG2185 Predicted RNA-processi 23.5 1.5E+02 0.0032 33.0 5.5 19 819-837 447-465 (486)
338 TIGR01000 bacteriocin_acc bact 23.4 1.8E+02 0.0039 33.6 6.8 66 771-837 240-312 (457)
339 PRK10947 global DNA-binding tr 23.4 2.7E+02 0.0059 26.3 6.6 30 810-839 36-65 (135)
340 PF14197 Cep57_CLD_2: Centroso 23.4 3E+02 0.0065 22.7 6.1 21 773-793 4-24 (69)
341 PHA02562 46 endonuclease subun 23.4 2.1E+02 0.0044 34.0 7.5 66 770-835 216-281 (562)
342 KOG2129 Uncharacterized conser 23.3 3.7E+02 0.008 30.1 8.4 60 774-833 201-270 (552)
343 PF00261 Tropomyosin: Tropomyo 23.2 2.2E+02 0.0048 29.7 6.8 64 772-835 125-188 (237)
344 PF12325 TMF_TATA_bd: TATA ele 23.1 2.6E+02 0.0056 25.9 6.3 19 775-793 24-42 (120)
345 TIGR00103 DNA_YbaB_EbfC DNA-bi 23.0 2.6E+02 0.0057 25.0 6.3 33 776-808 7-39 (102)
346 PF14193 DUF4315: Domain of un 22.8 3.7E+02 0.008 23.1 6.7 45 782-840 2-48 (83)
347 KOG3361 Iron binding protein i 22.6 40 0.00088 31.2 0.9 35 198-242 47-81 (157)
348 PF11945 WASH_WAHD: WAHD domai 22.2 2.9E+02 0.0063 29.9 7.5 58 772-839 16-73 (297)
349 PF15456 Uds1: Up-regulated Du 22.0 3.6E+02 0.0078 25.1 7.1 23 815-837 87-109 (124)
350 PRK08032 fliD flagellar cappin 21.9 2.6E+02 0.0055 32.5 7.6 53 777-839 409-461 (462)
351 PF02388 FemAB: FemAB family; 21.8 1.8E+02 0.0039 33.0 6.3 65 763-838 237-302 (406)
352 PLN02907 glutamate-tRNA ligase 21.7 1.3E+02 0.0028 37.0 5.2 46 57-106 262-307 (722)
353 KOG1149 Glutamyl-tRNA syntheta 21.6 2.1E+02 0.0045 32.4 6.2 120 15-144 42-190 (524)
354 PF05529 Bap31: B-cell recepto 21.6 2.9E+02 0.0063 27.6 7.1 63 775-837 119-182 (192)
355 PRK10132 hypothetical protein; 21.5 4.5E+02 0.0097 23.9 7.4 59 770-830 8-66 (108)
356 TIGR00414 serS seryl-tRNA synt 21.5 2.5E+02 0.0054 32.1 7.3 58 771-834 41-101 (418)
357 KOG0978 E3 ubiquitin ligase in 21.4 2E+02 0.0044 34.7 6.6 69 772-840 557-625 (698)
358 PF10211 Ax_dynein_light: Axon 21.2 1.9E+02 0.0042 29.0 5.6 28 771-798 124-151 (189)
359 PF04156 IncA: IncA protein; 21.2 2.7E+02 0.0058 27.7 6.8 23 773-795 94-116 (191)
360 TIGR00019 prfA peptide chain r 21.1 2.3E+02 0.005 31.5 6.6 25 779-803 5-29 (360)
361 PF10359 Fmp27_WPPW: RNA pol I 21.1 3.3E+02 0.0071 31.7 8.3 62 775-837 164-228 (475)
362 PF11853 DUF3373: Protein of u 21.0 85 0.0018 36.2 3.3 26 772-798 23-48 (489)
363 PF12999 PRKCSH-like: Glucosid 20.9 2.2E+02 0.0047 28.3 5.6 29 809-837 146-174 (176)
364 KOG0250 DNA repair protein RAD 20.9 2.5E+02 0.0055 35.4 7.3 60 772-837 363-422 (1074)
365 COG5000 NtrY Signal transducti 20.8 79 0.0017 37.2 3.0 72 23-103 502-578 (712)
366 KOG1666 V-SNARE [Intracellular 20.4 3.2E+02 0.007 27.8 6.8 55 776-836 38-92 (220)
367 PF09755 DUF2046: Uncharacteri 20.4 5.3E+02 0.011 28.0 8.8 25 776-800 180-204 (310)
368 COG3352 FlaC Putative archaeal 20.4 4.6E+02 0.01 25.2 7.3 57 771-833 76-132 (157)
369 COG0525 ValS Valyl-tRNA synthe 20.2 1.4E+02 0.0031 37.0 5.2 63 776-839 809-872 (877)
370 PHA02562 46 endonuclease subun 20.0 2.5E+02 0.0054 33.3 7.3 27 811-837 215-241 (562)
371 PF08614 ATG16: Autophagy prot 20.0 2.1E+02 0.0045 28.8 5.7 60 771-837 113-172 (194)
372 PRK10778 dksA RNA polymerase-b 20.0 5.9E+02 0.013 24.6 8.4 66 772-837 37-108 (151)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-214 Score=1819.98 Aligned_cols=812 Identities=51% Similarity=0.918 Sum_probs=755.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||++|||++.++|++++++|||+|+++||+|++++++.|++||++||+|+||+|+|
T Consensus 62 l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~ 141 (877)
T COG0525 62 LARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRER 141 (877)
T ss_pred HHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 58999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
|||||+++++|+.+|++||++|||||++++|||||+|+|||||.||+|++..|.++||+|++++++.+|+|||||||||+
T Consensus 142 fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtml 221 (877)
T COG0525 142 FTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLL 221 (877)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccchhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
|||||||||+|+||++|+|+.+.+|+. |+.||||+|+|||++||||+||||||||+|||++++||+||+++++|++|++
T Consensus 222 gdtAVaVhP~DeRYk~LvGk~v~lPl~-~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~i 300 (877)
T COG0525 222 GDTAVAVHPDDERYKHLVGKEVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRI 300 (877)
T ss_pred cceEEEECCCChhhHhhcCCEEecCCC-CCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCee
Confidence 999999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-CCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 241 NEVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 241 ~~~~g-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
+++++ +|+||++++||++|++.|++.|+|++.+++.|++|||+|||+||||++++|||+++..+++.+++++++|+++|
T Consensus 301 n~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 301 NEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred ccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceE
Confidence 98875 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160 320 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 399 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~ 399 (843)
+|++++++|.+|+++++|||||||+|||||||+|||.+ ++..+++.+..+.... ...+....++||+|||||||||+
T Consensus 381 ~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~-~g~v~v~~~~~~~~~~--~~~~~~~~~~qd~DVLDTWFSS~ 457 (877)
T COG0525 381 VPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKE-CGNVVVAEEEPEDPAA--AEKCPKEELEQDEDVLDTWFSSS 457 (877)
T ss_pred ecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecC-CCcEEeCCccccchhh--hccCchhcccCCcchhhhhhhcc
Confidence 99999999999999999999999999999999999963 6777777764433222 11122256889999999999999
Q ss_pred cccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccCh
Q 003160 400 LWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479 (843)
Q Consensus 400 l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p 479 (843)
+|||+++|||+++ .+|++|||+|++++|+||||||++||+|+|+.++|+.||++|++||+|+|++|+|||||+||||||
T Consensus 458 LwPfstlgWp~~t-~~l~~fyPt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP 536 (877)
T COG0525 458 LWPFSTLGWPEET-PDLKKFYPTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDP 536 (877)
T ss_pred cccccccCCCCcc-hHHHhcCCCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCH
Confidence 9999999999996 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCC
Q 003160 480 IDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKA 558 (843)
Q Consensus 480 ~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (843)
.++|++||||||||||++.+. |+|++|+++.++++++|+||+||+.||+++++.+....+ ......
T Consensus 537 ~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~-------------~~~~~~ 603 (877)
T COG0525 537 LDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDD-------------LDLLAL 603 (877)
T ss_pred HHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCccc-------------cccccc
Confidence 999999999999999999877 999999999999999999999999999999875544300 000123
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003160 559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKL 638 (843)
Q Consensus 559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~L 638 (843)
+.+|+||+++|+++++.++++|++|+|..|.+++|+|+|++|||||||++|++++++ ++.+.+++.+|+++|+.+++|
T Consensus 604 ~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~--~~~~~~a~~tL~~vl~~~lrL 681 (877)
T COG0525 604 SLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGG--EEEKRAARATLYYVLDTLLRL 681 (877)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999986 556678999999999999999
Q ss_pred hCCCchhhHHHHHHHhccCCCceEecCCCCCC-CcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEecCHHHH
Q 003160 639 LHPFMPFVTEELWQSLRKRKEALIVSPWPQTS-LPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVI 717 (843)
Q Consensus 639 L~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~-~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~~~ 717 (843)
|||||||+||||||.++.. +||+.++||+++ ...|+.++..++.+.++|.+||++|+++++++++++++.+...++..
T Consensus 682 LhPfmPfiTEei~q~l~~~-~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~~~~~~~~~~~~~~~ 760 (877)
T COG0525 682 LHPFMPFITEEIWQKLPGT-ESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELE 760 (877)
T ss_pred hCCCCccchHHHHHhcCCC-CeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEeccHhHH
Confidence 9999999999999999875 699999999997 47788999999999999999999999999999999999888445566
Q ss_pred HHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 718 QYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 718 ~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
..++.+...|..+.+++. +.+.+..++.+..++. .+....++++++.|.||..+|++||+|+++++++|+++++++|
T Consensus 761 ~~~~~~~~~i~~~~~~~~--i~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~id~~~e~~rl~k~~~k~~~e~~~~~~kl 837 (877)
T COG0525 761 DRLEANEDDIKGLANLEE--LEILSPDPEEPPVEVT-AVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKKL 837 (877)
T ss_pred HHHHHHHHHHHHhcCcce--eeecccCccccchhHH-hhhccceEEEeccchhhHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 777888888998888864 4444333332334454 3457889999999999999999999999999999999999999
Q ss_pred cCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 798 SSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 798 ~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+|++|+.|||+++|++|++|+++++.++++++..|+.|.
T Consensus 838 ~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l~~l~ 876 (877)
T COG0525 838 SNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERLAVLK 876 (877)
T ss_pred cchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999875
No 2
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-198 Score=1642.36 Aligned_cols=822 Identities=50% Similarity=0.865 Sum_probs=765.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHc-CCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAE-GIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~-g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||.|+|+||+||+||+||++|||.+.++ |++++++||++|+++||+|+++++.+|.+|+++||.|+||+|+
T Consensus 104 i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re 183 (995)
T KOG0432|consen 104 LARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDRE 183 (995)
T ss_pred HHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHh
Confidence 589999999999999999999999999999999655 5999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC----------------CeEEEEEEEec
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVA 143 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~ 143 (843)
+|||||+.+++|..+|++||++|+|||+.+.|||||.++|+|||.||++.+.. |.++.|+|++.
T Consensus 184 ~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~faY~v~ 263 (995)
T KOG0432|consen 184 AFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVE 263 (995)
T ss_pred hcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecceecCCCceEecCCCCcceeeeeeeEEEEecc
Confidence 99999999999999999999999999999999999999999999999998843 78999999999
Q ss_pred CCCeEEEEEeCCccccccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHH
Q 003160 144 GRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLA 223 (843)
Q Consensus 144 ~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~ 223 (843)
+++..|+|+|||||||+||+||||||+|+||++++|+.+.|||+ +|.+|||.|.+|||+||||+||||||||++||++|
T Consensus 264 gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~-~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvg 342 (995)
T KOG0432|consen 264 GSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFT-GRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVG 342 (995)
T ss_pred CCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCC-CCccceeecccccccccccceEecCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecch
Q 003160 224 RKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 303 (843)
Q Consensus 224 ~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~ 303 (843)
+||||+++++++++|.+++.||+|.||+||+||++|++.|++.|+++..+++++.+|.|+|||++|||++.+|||+++++
T Consensus 343 kRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~e 422 (995)
T KOG0432|consen 343 KRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKE 422 (995)
T ss_pred HhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcC-----CcccEEEecChhHHHHHHhhh
Q 003160 304 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVG-----KEEEYIVARNADEALEKAHQK 378 (843)
Q Consensus 304 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 378 (843)
+++++++++++|++.+.|+.+++.|.+|++|++|||||||+||||+||+|++.- .+++|+++.+++++++++...
T Consensus 423 ma~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k 502 (995)
T KOG0432|consen 423 MAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEK 502 (995)
T ss_pred HHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999831 246799999999999999888
Q ss_pred cC--CCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEE
Q 003160 379 YG--KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVY 456 (843)
Q Consensus 379 ~~--~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~ 456 (843)
+| ....++||+||||||||||+||||++|||+++ ++|+.|||.+++.||+||+|||++||+|+|+.++|++||++|+
T Consensus 503 ~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t-~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~ 581 (995)
T KOG0432|consen 503 FGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEET-KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVL 581 (995)
T ss_pred hCCcccceeecCccHHHhhhhcccccchhcCCcccc-ccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchhee
Confidence 75 56789999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred EeeeEECCCCCcccccCCCccChhhHHH-------------------------------------hhChhHHHHHHHhCC
Q 003160 457 LHGLIRDSQGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRFTISLGT 499 (843)
Q Consensus 457 ~hg~v~d~~G~KMSKS~GNvI~p~dii~-------------------------------------~yGaDalR~~l~~~~ 499 (843)
+||+|+|.+|||||||+||||||.|+|+ ++|+|||||.|++.+
T Consensus 582 LH~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~ 661 (995)
T KOG0432|consen 582 LHGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYT 661 (995)
T ss_pred echhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHcc
Confidence 9999999999999999999999999998 579999999999998
Q ss_pred c-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHH
Q 003160 500 A-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVT 577 (843)
Q Consensus 500 ~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~ 577 (843)
. ++|+++|..+++++++|||||||+.||+++.+.. +.+.. ..... ......|+||+++|+.+++.++
T Consensus 662 ~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~----------~~~~~-~~~~~~d~WIlsrL~~av~~~~ 730 (995)
T KOG0432|consen 662 TQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSP----------TEDLS-GNESLVDEWILSRLAEAVEEVN 730 (995)
T ss_pred ccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCc----------ccccC-CCcchhHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999999999986542 32200 00001 1112289999999999999999
Q ss_pred HHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 578 ASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 578 ~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
++|+.|+|+.|+.++++|+.+++||.|+|.+||-++.+ +...+..+..+|+.||+..++||||||||+||||||+|+..
T Consensus 731 ~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~-~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r 809 (995)
T KOG0432|consen 731 ESLEARNFHLATSALYAFWLYDLCDVYLEATKPLLWGD-SEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRR 809 (995)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC-cHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccC
Confidence 99999999999999999999999999999999999876 44577888999999999999999999999999999999866
Q ss_pred CC----ceEecCCCCCC-CcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-cCHHHHHHHHHHHHHHHHHc
Q 003160 658 KE----ALIVSPWPQTS-LPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLS 731 (843)
Q Consensus 658 ~~----si~~~~~P~~~-~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~ 731 (843)
.+ ||+.++||... .+.|+++|..|+.++++++.+|++|+.|+++++.+..+++. +.+.....++.....+.+++
T Consensus 810 ~~~~~~si~va~yP~~~~~~~~~e~E~~~~~v~~i~~~iRslra~y~l~~~~~~~v~~~~s~~~~~~~~~~~~~~i~~l~ 889 (995)
T KOG0432|consen 810 KGSKPASISVSPYPSSNELWRNEELESAFELVLAITRAIRSLRAEYNLSPKPRGSVFIASSDEEDKSILKEFLDEISTLT 889 (995)
T ss_pred CCCCCCceEecCCCchhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCcchhHHHHHHHHHHHhh
Confidence 43 89999999544 48899999999999999999999999999998667888877 33333556677788888888
Q ss_pred CCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH
Q 003160 732 RLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV 811 (843)
Q Consensus 732 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv 811 (843)
+++. +.+....+..+.+++..++++++.+||+++|.+|++.|+.+|.|+++|+|+++++++.++++++|..|||.+++
T Consensus 890 ~~~~--v~i~~~~~~~~~g~~~~~~~~~~~v~l~l~g~vd~~~e~~kl~kkl~klqk~~~~l~~r~~~~~~~~k~p~~v~ 967 (995)
T KOG0432|consen 890 NLEL--VSISSPAEEDAQGCALSVASSDCQVYLPLKGLVDPDSEIQKLAKKLEKLQKQLDKLQARISSSDYQEKAPLEVK 967 (995)
T ss_pred ccce--eEeccCCccccCcceEeccCCceEEEEEeccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCHHHH
Confidence 8865 44555555566889998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 812 RGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 812 ~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+.+++|+++++++++.++++++.++.+
T Consensus 968 ~~~~~Kl~~~~~ei~~~~~~~~~l~~~ 994 (995)
T KOG0432|consen 968 EKNKEKLKELEAEIENLKAALANLKSL 994 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999875
No 3
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.6e-188 Score=1696.99 Aligned_cols=838 Identities=89% Similarity=1.389 Sum_probs=758.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+|||.|+++|+++.++||++|+++||+|++++++.|++||++||+|+||+|+|
T Consensus 117 ~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~ 196 (958)
T PLN02943 117 MVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRER 196 (958)
T ss_pred HHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCc
Confidence 58999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCC-eEEEEEeCCcccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETL 159 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~-~~l~v~TtrPeTl 159 (843)
+||||.|+++|+|+|++||++||||||.++|||||.|+|+|||+||+|++..+.++||+|++.+++ .+|+|||||||||
T Consensus 197 ~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~~~~~~~i~f~l~~~~~~~l~vaTTrPeTl 276 (958)
T PLN02943 197 FTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGGSEDFLTIATTRPETL 276 (958)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccccccEEEEEEEEcCCCCCEEEEEeCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999999997755 7999999999999
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
+||+||||||+|+||++++|+++.||++.|+.+|||+|+||++++|||+||+|||||++||++|++||||+++++|++|+
T Consensus 277 ~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~ 356 (958)
T PLN02943 277 FGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 356 (958)
T ss_pred hcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCce
Confidence 99999999999999999999999999944899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
|++.+|.| ++|||++|++.|+++|++++.++++|++|+|||||+||++++++||||+++++++++++++++++++|
T Consensus 357 ~~~~~g~~----~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~ 432 (958)
T PLN02943 357 LNEVAGLY----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTI 432 (958)
T ss_pred eeccCCcc----HHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEE
Confidence 99866554 99999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred ecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCC-cc-cEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 320 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK-EE-EYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
+|+++++++.+||++++|||||||||||||||+|+|+++ ++ .|+++.+.++++..+...+|.+..+.|++||||||||
T Consensus 433 ~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFd 512 (958)
T PLN02943 433 IPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFS 512 (958)
T ss_pred EChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEc
Confidence 999999999999999999999999999999999998422 23 4888888888877666666666678999999999999
Q ss_pred cCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCcc
Q 003160 398 SALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 477 (843)
Q Consensus 398 S~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI 477 (843)
||+||++++|||...+++|++|||+|++++|+||++||+++|+++|+.++|++||++|++||+++|.+|+|||||+||+|
T Consensus 513 S~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i 592 (958)
T PLN02943 513 SALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVI 592 (958)
T ss_pred CccchHHhcCCCccChHHHhccCCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCC
Confidence 99999999999986447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcC
Q 003160 478 DPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCK 557 (843)
Q Consensus 478 ~p~dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (843)
+|.+++++||+|++||||++.++++|++|+++.+..+++++++|||++||+++++.+.........+....++.......
T Consensus 593 ~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (958)
T PLN02943 593 DPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLS 672 (958)
T ss_pred CHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccc
Confidence 99999999999999999998766999999999999999999999999999988764321100000000000110001123
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHH
Q 003160 558 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILK 637 (843)
Q Consensus 558 ~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~ 637 (843)
++..|+||+++++.++++++++|++|+|+.|++.+++|+|+++|||||+.+||+++++++...+.+++.+++++++.+++
T Consensus 673 l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~ 752 (958)
T PLN02943 673 LPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYVFENILK 752 (958)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999998764444567789999999999999
Q ss_pred HhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEecCHHHH
Q 003160 638 LLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVI 717 (843)
Q Consensus 638 LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~~~ 717 (843)
||||||||+|||||++|++.++||+.++||+.+...|+++++.++.++++|+++|++|++++++++.++.+++.+..+..
T Consensus 753 LL~PfmPfitEELwq~L~~~~~si~~~~wP~~~~~~d~~~~~~~~~v~~ii~~iR~~r~~~~i~~~~~~~~~i~~~~~~~ 832 (958)
T PLN02943 753 LLHPFMPFVTEELWQALPYRKEALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVASAEVI 832 (958)
T ss_pred HHhCcchhHHHHHHHHcCCCCCceeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccEEEecChhHH
Confidence 99999999999999999865569999999998766688899999999999999999999999999999998877444455
Q ss_pred HHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 718 QYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 718 ~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
+.+......|+.|++++...+.+....+....+++..++..++++|+++.|.||+++|++||+|++++++++++++++||
T Consensus 833 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kL 912 (958)
T PLN02943 833 EYISKEKEVLALLSRLDLQNVHFTDSPPGDANQSVHLVASEGLEAYLPLADMVDISAEVERLSKRLSKMQTEYDALAARL 912 (958)
T ss_pred HHHHHHHHHHHHHhcCcccccccccCCCccccceeEEEecCceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788889999998875334444332222122345555667899999999999999999999999999999999999999
Q ss_pred cCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 003160 798 SSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMVT 842 (843)
Q Consensus 798 ~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~~ 842 (843)
+|++|++|||++||+++++|+++++++++++++.|+.|++++.+|
T Consensus 913 sN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~~~~~ 957 (958)
T PLN02943 913 SSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKSTSLVS 957 (958)
T ss_pred CCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999988776
No 4
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.8e-186 Score=1690.56 Aligned_cols=825 Identities=41% Similarity=0.753 Sum_probs=751.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHH-HHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||.+||+.| .+.|++++++||++|+++||+|++++++.|++||++||+|+||+|+
T Consensus 157 i~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~ 236 (1066)
T PLN02381 157 IIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRE 236 (1066)
T ss_pred HHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCc
Confidence 589999999999999999999999999999998 5579999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC----------------CeEEEEEEEec
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVA 143 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~ 143 (843)
|+||||.|+++|+|+|++||++||||||.++|||||+|+|+|||+||+|++.. +.+++|+|++.
T Consensus 237 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~ 316 (1066)
T PLN02381 237 CFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYIDIKERTLLKVPGYDKPVEFGVLTSFAYPLE 316 (1066)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhccccchhhcccCCCcceeeEEEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999998876 66788999998
Q ss_pred CCCeEEEEEeCCccccccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCC-CCCccCCCCeEEecCCCCHHhHHH
Q 003160 144 GRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLL 222 (843)
Q Consensus 144 ~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~Pah~~~D~~~ 222 (843)
+++.+++|||||||||+|++||||||+|+||++|+|++|.|||. ++.+|||+|. ||++++|||+||+|||||++||++
T Consensus 317 ~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~-~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~ 395 (1066)
T PLN02381 317 GGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFN-GRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEV 395 (1066)
T ss_pred CCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCC-CCEEEEEECCccccccCCCCcEEecCCCChHHHHH
Confidence 66678999999999999999999999999999999999999994 8999999975 999999999999999999999999
Q ss_pred HHHhCCCceeeccCCCcccccCC-CCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEec
Q 003160 223 ARKLGLPILNVMNKDGTLNEVAG-LFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM 301 (843)
Q Consensus 223 ~~~~~l~~~~~i~~~G~~~~~~g-~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~ 301 (843)
|++||||+++++|++|++++++| .|.|+++++||++|++.|++.|++++.++|.|+||||||||+||++++++|||++|
T Consensus 396 ~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~ 475 (1066)
T PLN02381 396 GKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNC 475 (1066)
T ss_pred HHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEc
Confidence 99999999999999999998875 79999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH---HcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEc--C-------C-cccEEEecCh
Q 003160 302 EPLAEKALHAV---EKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV--G-------K-EEEYIVARNA 368 (843)
Q Consensus 302 ~~~~~~~~~~~---~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~--~-------~-~~~~~~~~~~ 368 (843)
+++++++++++ .+++++|+|++++++|.+||+|++|||||||||||||||+|+|+ + . .+.|++..+.
T Consensus 476 ~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~ 555 (1066)
T PLN02381 476 SSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNE 555 (1066)
T ss_pred hHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccch
Confidence 99999999999 67899999999999999999999999999999999999999994 1 0 1356667776
Q ss_pred hHHHHHHhhhc-CCCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhh
Q 003160 369 DEALEKAHQKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFT 447 (843)
Q Consensus 369 ~~~~~~~~~~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~ 447 (843)
.+++..+...| |....++|++||||||||||+||++++|||.+. ++|++|||+|++++|+||+|||+++|+++|+.++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~-~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~ 634 (1066)
T PLN02381 556 SDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDT-DDLKAFYPTSVLETGHDILFFWVARMVMMGMQLG 634 (1066)
T ss_pred HhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCH-HHHhccCCCeeeeecchhhhhHHHHHHHHHHHhC
Confidence 66655443333 323358999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred CCCCceEEEEeeeEECCCCCcccccCCCccChhhHHH-------------------------------------hhChhH
Q 003160 448 GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADA 490 (843)
Q Consensus 448 ~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~-------------------------------------~yGaDa 490 (843)
++.||++|++||||+|.+|+|||||+||||||.++|+ +|||||
T Consensus 635 ~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADa 714 (1066)
T PLN02381 635 GDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDA 714 (1066)
T ss_pred CCCchHHheecceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHH
Confidence 9999999999999999999999999999999999999 899999
Q ss_pred HHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCchhHHHHHHhhccchhhhhcCCChhHHHHHHH
Q 003160 491 LRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPS-QNDISRWEILLAYKFDEEECLCKAPLPECWVVSK 568 (843)
Q Consensus 491 lR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~ 568 (843)
|||||++.++ ++|++|+++.+.++++|||||||++||+++++.+ +.+. .......++.+|+||+++
T Consensus 715 lR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~------------~~~~~~~~~~~DrWILsk 782 (1066)
T PLN02381 715 LRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPP------------ATLSVETMPFSCKWILSV 782 (1066)
T ss_pred HHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc------------cccCccccCHHHHHHHHH
Confidence 9999999887 9999999999999999999999999999887642 2110 000112356789999999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHHHHHHHhCCCchhh
Q 003160 569 LHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY--DSDAIIAQAVLLYIFENILKLLHPFMPFV 646 (843)
Q Consensus 569 l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~--~~~~~~~~~~l~~~l~~~l~LL~P~~P~i 646 (843)
|+.++++++++|++|+|+.|++++++|+|+++|||||+.+|||++++.. ...+++++.+|+++++.+++||||||||+
T Consensus 783 L~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfi 862 (1066)
T PLN02381 783 LNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFV 862 (1066)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence 9999999999999999999999999999999999999999999987532 23566788999999999999999999999
Q ss_pred HHHHHHHhcc-----CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhc-CCCccceeeEEEe-cCHHHHH
Q 003160 647 TEELWQSLRK-----RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEY-SVEPAKRISASIV-ANEEVIQ 718 (843)
Q Consensus 647 aEeiw~~L~~-----~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~-~i~~~~~~~~~i~-~~~~~~~ 718 (843)
|||||+.|+. ..+||+.++||+++. +.|++++..|+.++++|+.+|++|+++ +++++.++++++. .+.+...
T Consensus 863 tEELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k~~~~~~~~~~~~~~~~ 942 (1066)
T PLN02381 863 TEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKNERLPAFALCRNQEIAA 942 (1066)
T ss_pred HHHHHHHhhhhccCCCCCeeEeCCCCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCcEEEEcCCHHHHH
Confidence 9999999973 236999999999884 779999999999999999999999999 7888888987766 5556667
Q ss_pred HHHHHHHHHHHHcCCcccceeec-CCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 719 YISKEKEVLALLSRLDLLNVHFT-ESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 719 ~~~~~~~~i~~l~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
.++....+|+.|++++.. .+. ....+.|.+++..++..++++|+++.|.||+++|++||+|+++++++++++++++|
T Consensus 943 ~l~~~~~~i~~l~~~~~v--~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~iD~~~E~~rL~K~l~klekei~~~~~kL 1020 (1066)
T PLN02381 943 IIKSHQLEILTLANLSSL--KVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKM 1020 (1066)
T ss_pred HHHHHHHHHHHhhCCCee--eeeccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 788888999999988654 332 11112345676545667899999999999999999999999999999999999999
Q ss_pred cCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 798 SSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 798 ~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
+|++|++|||++||+++++|+++++++++.+++.|+.|+++.+.
T Consensus 1021 sN~~F~~KAP~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~~~ 1064 (1066)
T PLN02381 1021 NASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKRLEAETSN 1064 (1066)
T ss_pred cCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999988764
No 5
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=9.6e-186 Score=1697.42 Aligned_cols=832 Identities=43% Similarity=0.788 Sum_probs=754.1
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHH-HHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||++||+.+ ++.|++++++||++|+++||+|++++++.|++||++||+|+||+|+
T Consensus 89 ~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~ 168 (995)
T PTZ00419 89 LIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSRE 168 (995)
T ss_pred HHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCC
Confidence 589999999999999999999999999999998 6779999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC----------------CeEEEEEEEec
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP----------------GTLYYIKYRVA 143 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~----------------~~~~~~~~~~~ 143 (843)
|+||||+|+++|+|+|++||++|||||+.++|||||.|+|+|||+||+|++.. |.++||+|++.
T Consensus 169 ~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~~~~~~~~~~~~~~~~~~~g~l~~i~f~l~ 248 (995)
T PTZ00419 169 VFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLE 248 (995)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccccccccceeeccccccccccceeEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999877 78889999998
Q ss_pred CCCe-EEEEEeCCccccccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCC-CCCccCCCCeEEecCCCCHHhHH
Q 003160 144 GRSD-FLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYL 221 (843)
Q Consensus 144 ~~~~-~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~Pah~~~D~~ 221 (843)
+++. +|+|||||||||+||+||||||+|+||++|+|++|.|||..++.+|||+|+ ||++++|||+||+|||||++||+
T Consensus 249 ~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~ 328 (995)
T PTZ00419 249 DSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYE 328 (995)
T ss_pred CCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHH
Confidence 7665 999999999999999999999999999999999999999338999999999 99999999999999999999999
Q ss_pred HHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEec
Q 003160 222 LARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM 301 (843)
Q Consensus 222 ~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~ 301 (843)
+|++||||+++++|++|+|++++|+|.|++++|||++|++.|+++|++++.++|.|++|+|||||+||++++++||||+|
T Consensus 329 ~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~ 408 (995)
T PTZ00419 329 IAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNC 408 (995)
T ss_pred HHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCC--------cccEEEecChhHHHH
Q 003160 302 EPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGK--------EEEYIVARNADEALE 373 (843)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~--------~~~~~~~~~~~~~~~ 373 (843)
+++++++++++++++++|+|+.+++++.+||++++|||||||||||||||+|+|++. .+.|++..+.+++++
T Consensus 409 ~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (995)
T PTZ00419 409 KDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALE 488 (995)
T ss_pred HHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHh
Confidence 999999999999899999999999999999999999999999999999999999641 234666777777665
Q ss_pred HHhhhcC---CCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCC
Q 003160 374 KAHQKYG---KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSV 450 (843)
Q Consensus 374 ~~~~~~~---~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~ 450 (843)
.+...++ .+..++|++||||||||||+||++++|||.++ ++|++|||+|++++|+||+|||++||+++|+.++|++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~ 567 (995)
T PTZ00419 489 KAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQT-DDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKL 567 (995)
T ss_pred hhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCCh-HHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCC
Confidence 5433322 12468999999999999999999999999876 7899999999999999999999999999999999999
Q ss_pred CceEEEEeeeEECCCCCcccccCCCccChhhHHH-------------------------------------hhChhHHHH
Q 003160 451 PFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-------------------------------------EFGADALRF 493 (843)
Q Consensus 451 Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~-------------------------------------~yGaDalR~ 493 (843)
||++|++||+|+|.+|+|||||+||||||.++|+ +||||+|||
T Consensus 568 Pfk~v~~HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~ 647 (995)
T PTZ00419 568 PFKTVFLHAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRF 647 (995)
T ss_pred ChHHHhccceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHH
Confidence 9999999999999999999999999999999999 899999999
Q ss_pred HHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHH
Q 003160 494 TISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHML 572 (843)
Q Consensus 494 ~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~ 572 (843)
||++.+. ++|++|+.+.+.+.++|+||+||++||+++++.+...... ...........++..|+||+++++.+
T Consensus 648 ~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~------~~~~~~~~~~~~~~~D~wIls~L~~~ 721 (995)
T PTZ00419 648 GLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN------STLFKPNNVESLPWEDKWILHRLNVA 721 (995)
T ss_pred HHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cccccccccccCCHHHHHHHHHHHHH
Confidence 9999887 9999999999999999999999999999987754321000 00000000123456899999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Q 003160 573 IDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQ 652 (843)
Q Consensus 573 ~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~ 652 (843)
++.++++|++|+|+.|++.+++|+|+++|||||+.+|||++...+...++.++.+|+++|+.+++||||||||+|||||+
T Consensus 722 i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~ 801 (995)
T PTZ00419 722 IKEVTEGFKEYDFSEATQATYNFWLYELCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQ 801 (995)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999984332344567789999999999999999999999999999
Q ss_pred Hhcc---CCCceEecCCCCCC-CcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-cCHHHHHHHHHHHHHH
Q 003160 653 SLRK---RKEALIVSPWPQTS-LPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVL 727 (843)
Q Consensus 653 ~L~~---~~~si~~~~~P~~~-~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i 727 (843)
+|+. .++||+.++||+++ .+.|++++..|+.++++++.+|++|+++++++++++.+.+. .+++..+.++....+|
T Consensus 802 ~L~~~~~~~~si~~~~~P~~~~~~~d~~~e~~~~~~~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~~~~~~~~~~~i 881 (995)
T PTZ00419 802 RLPNYLRKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIRSLIATLGIPNKTKPDCYVTAKDAELIELIESAENLI 881 (995)
T ss_pred hhhccCCCCCeeeccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEeCCHHHHHHHHHHHHHH
Confidence 9974 24699999999987 47789999999999999999999999999999999998776 4555667788888999
Q ss_pred HHHcCCcccceeec-CCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccC
Q 003160 728 ALLSRLDLLNVHFT-ESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA 806 (843)
Q Consensus 728 ~~l~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~ka 806 (843)
+.|++++...+... ......|.+++..++..++++|+++.|.||+++|++||+|+++++++++++++++|+||+|++||
T Consensus 882 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~l~~~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kA 961 (995)
T PTZ00419 882 STLAKIGSVSVIPPIEEEAEVPKGCGFDVVDNKVIIYLNLDEFIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKV 961 (995)
T ss_pred HHhcCCCeeEEeccccccccCcccceeeEecCceEEEEECCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcC
Confidence 99998875433200 11111245565545666899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 807 PEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 807 p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
|++||+++++|+++++++++++++.|+.|++|+
T Consensus 962 p~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~ 994 (995)
T PTZ00419 962 PEDVRKLNDEKIDELNEEIKQLEQAIEELKSLL 994 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999875
No 6
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-185 Score=1673.43 Aligned_cols=805 Identities=52% Similarity=0.942 Sum_probs=743.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+||+.++++|++++++||++|+++||+|++++++.|++||++||+|+||+|+|
T Consensus 65 ~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~ 144 (874)
T PRK05729 65 LIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRER 144 (874)
T ss_pred HHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCc
Confidence 58999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
+||||+|+++|+|+|++||++||||||.++|+|||+|+|+|||+||+|++..|.++||+|++.+++.+|+|||||||||+
T Consensus 145 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~~~~~~~i~f~~~~~~~~l~vaTtrPeTl~ 224 (874)
T PRK05729 145 FTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEVKGKLWHIRYPLADGSDYLVVATTRPETML 224 (874)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccccceEEEEEEEecCCCcEEEEEeCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
||+||||||+|+||++|+|++|.||+. ++.+|||+|+||++++|||+||+|||||++||++|++||||+++++|++|++
T Consensus 225 ~~~avaV~P~d~ry~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 303 (874)
T PRK05729 225 GDTAVAVNPEDERYKHLIGKTVILPLV-GREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTI 303 (874)
T ss_pred cCeeEeECCCccHHHHhcCCEEECCCC-CCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeE
Confidence 999999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
++++|+|.|+++++||++|++.|+++|++.+.+++.|++|+|||||+||++++++||||+|+++++++++++++++++|+
T Consensus 304 ~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~ 383 (874)
T PRK05729 304 NENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFV 383 (874)
T ss_pred cCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred cchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecCc
Q 003160 321 PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSAL 400 (843)
Q Consensus 321 P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~l 400 (843)
|+++++++.+||++++|||||||||||||||+|+|.+ +.+.+..+..+. +....++|++|||||||||++
T Consensus 384 P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~--~~~~v~~~~~~~--------~~~~~~~~~~DvlDtWfsS~l 453 (874)
T PRK05729 384 PERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED--GEVYVGREEPEA--------REKALLTQDEDVLDTWFSSAL 453 (874)
T ss_pred ChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC--CcEEeCCccccc--------ccccCeEeCCceecceecCCc
Confidence 9999999999999999999999999999999999964 344444433211 111248999999999999999
Q ss_pred ccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChh
Q 003160 401 WPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 480 (843)
Q Consensus 401 ~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~ 480 (843)
||++++|||+++ ++|++|||+|++++|+||+|||+++|+++|+.+++++||++|++||+|+|.+|+|||||+||||+|.
T Consensus 454 ~~~~~lgwp~~~-~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~ 532 (874)
T PRK05729 454 WPFSTLGWPEKT-EDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPL 532 (874)
T ss_pred cHHHHhCCCCCc-HHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHH
Confidence 999999999865 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCC
Q 003160 481 DTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAP 559 (843)
Q Consensus 481 dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (843)
++|++||+|++||||++.++ ++|++|+++.+.+.++|+|+|||++||+.+++.+..... ......++
T Consensus 533 dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~------------~~~~~~~~ 600 (874)
T PRK05729 533 DLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGE------------LPDPEELS 600 (874)
T ss_pred HHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc------------ccccccCC
Confidence 99999999999999999876 999999999999999999999999999987754332100 00012346
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHh
Q 003160 560 LPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLL 639 (843)
Q Consensus 560 ~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL 639 (843)
..|+||+++++.+++.++++|++|+|+.|++.+++|+|+++|||||+.+|||++ + . .++.++.+++++++.+++||
T Consensus 601 ~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~-~--~~~~~~~~l~~~l~~~~~lL 676 (874)
T PRK05729 601 LADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-E-A--AKRATRATLAYVLEQILRLL 676 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-h--HHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999987 3 2 26678899999999999999
Q ss_pred CCCchhhHHHHHHHhccC--CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-cCHH
Q 003160 640 HPFMPFVTEELWQSLRKR--KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEE 715 (843)
Q Consensus 640 ~P~~P~iaEeiw~~L~~~--~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~ 715 (843)
||||||+|||||+.|+.. .+||+.++||+.+. + |++++..|+.++++++++|++|++++|++++++.+.+. .+.+
T Consensus 677 ~Pf~PfitEelw~~l~~~~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~ii~~ir~~r~~~~i~~~~~~~~~i~~~~~~ 755 (874)
T PRK05729 677 HPFMPFITEELWQKLAPLGIEESIMLAPWPEADEAI-DEAAEAEFEWLKELITAIRNIRAEMNIPPSKKLPLLLKGADAE 755 (874)
T ss_pred cccchhhHHHHHHhcccCCCCCceeecCCCCCCccc-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeEEEEeCCHH
Confidence 999999999999999854 24899999999874 5 88899999999999999999999999999999998876 4555
Q ss_pred HHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 716 VIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 716 ~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
....++.....|+.|++++. |.++....+.|.+++. ++..++++|+++.|.||+++|++||+|++++++++++++++
T Consensus 756 ~~~~l~~~~~~i~~l~~~~~--v~~~~~~~~~~~~~~~-~v~~~~~i~l~l~~~id~~~e~~rL~K~l~kl~~ei~~~~~ 832 (874)
T PRK05729 756 DRARLEANEAYIKRLARLES--LEILADDEEAPEGAAS-AVVGGAELFLPLEGLIDVEAELARLEKELAKLEKEIERVEK 832 (874)
T ss_pred HHHHHHHHHHHHHHHhCcCc--eEEecCCCcCCcCceE-EEecCeEEEEECCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889999988865 4443322224567777 45678999999999999999999999999999999999999
Q ss_pred HhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 796 RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 796 kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+|+|++|++|||++||+++++|+++++++++++++.|+.|++
T Consensus 833 kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~~ 874 (874)
T PRK05729 833 KLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLKA 874 (874)
T ss_pred HhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998863
No 7
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.4e-179 Score=1624.71 Aligned_cols=796 Identities=49% Similarity=0.897 Sum_probs=734.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+|||.+.++|++++++||++|+++||+|++++++.|++||++||+|+||+|+|
T Consensus 62 ~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~ 141 (861)
T TIGR00422 62 IARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRER 141 (861)
T ss_pred HHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCc
Confidence 58999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCC-eEEEEEeCCcccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRS-DFLTIATTRPETL 159 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~-~~l~v~TtrPeTl 159 (843)
+||||.|+++|+|+|++||++||||||.++|+|||+|+|+|||+||+|++..+.++||+|++.+++ .+|+|||||||||
T Consensus 142 ~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~~~~~~~~~l~vaTtrPeTl 221 (861)
T TIGR00422 142 FTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEVKGKLYYIRYPLANGSKDYLVVATTRPETM 221 (861)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccccceEEEEEEEecCCCCCEEEEEeCCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999998765 8999999999999
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
+||+||||||+|+||++|+|++|.+|+. ++.+|||+|+||++++|||+||+|||||++||++|++||||+++++|++|+
T Consensus 222 ~~~~av~V~P~~~ry~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~ 300 (861)
T TIGR00422 222 FGDTAVAVHPEDERYKHLIGKKVILPLT-GRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGL 300 (861)
T ss_pred hhCeEEEECCCchHHHHhcCCEEEcCCC-CCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCe
Confidence 9999999999999999999999999995 899999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
+++++|.|+|++++|||++|++.|+++|++++.+++.|++|+|||||+||++++++||||+++++++++++++++++++|
T Consensus 301 ~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~ 380 (861)
T TIGR00422 301 LNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKF 380 (861)
T ss_pred EcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred ecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160 320 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 399 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~ 399 (843)
+|+++++++.+||++++|||||||||||||||+|+|+. ++.+.++.+..++...+ .+|.+..+.|++|||||||||+
T Consensus 381 ~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~dVlDtWFdS~ 457 (861)
T TIGR00422 381 VPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKE-CGEVYVAKEEPLPDDKT--NTGPSVELEQDTDVLDTWFSSS 457 (861)
T ss_pred EChHHHHHHHHHHhccccceeeeecccCCcceEEEECC-CCcEEeccchHHhhhhh--ccCCcccEEECCCcccceeccc
Confidence 99999999999999999999999999999999999964 55666666665554432 2444457999999999999999
Q ss_pred cccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccCh
Q 003160 400 LWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479 (843)
Q Consensus 400 l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p 479 (843)
+||++++|||.++ ++|++|||+|++++|+||++||+++|+++++++.++.||++|++||+|+|.+|+|||||+||+|+|
T Consensus 458 l~~~s~~g~p~~~-~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p 536 (861)
T TIGR00422 458 LWPFSTLGWPDET-KDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDP 536 (861)
T ss_pred hHHHHHhCCCCCh-HHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCH
Confidence 9999999999876 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCC
Q 003160 480 IDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKA 558 (843)
Q Consensus 480 ~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (843)
.+++++||+|++||||++.++ ++|++|+++.+.++++|+|+|||++||+.+++...... .......
T Consensus 537 ~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~-------------~~~~~~~ 603 (861)
T TIGR00422 537 LDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLEL-------------SGGEEKL 603 (861)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccc-------------ccccccC
Confidence 999999999999999999888 99999999999999999999999999998765433110 0001234
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 003160 559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKL 638 (843)
Q Consensus 559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~L 638 (843)
+..|+||+++++.++++++++|++|+|+.|++.+++|+|+++|||||+.+|||++++ +...+..++.+|+++++.+++|
T Consensus 604 ~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~-~~~~~~~~~~~l~~~l~~~~~l 682 (861)
T TIGR00422 604 SLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNG-NEAEKKAARDTLYYVLDKALRL 682 (861)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999998999999999999999875 3445678899999999999999
Q ss_pred hCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-cCHHH
Q 003160 639 LHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEV 716 (843)
Q Consensus 639 L~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~~ 716 (843)
|||||||+||+||+.|+...+||+.++||+++. +.|++++..|+.++++++.+|++|+++++++++++.+.+. .+.+.
T Consensus 683 L~Pf~P~itEelw~~L~~~~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~~~i~~~~~l~~~i~~~~~~~ 762 (861)
T TIGR00422 683 LHPFMPFITEEIWQHFKEGADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPNAPLKVLLIYTEAET 762 (861)
T ss_pred HhhhhhHHHHHHHHhCcccCCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcceEEEEeCCHHH
Confidence 999999999999999986557999999999884 7789999999999999999999999999999999998876 44455
Q ss_pred HHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhH
Q 003160 717 IQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 717 ~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~k 796 (843)
.+.++.....|+.|.+++.. .+....+ +.+++...+..++++++++.+.+|.++|++||+|++++++++++++++|
T Consensus 763 ~~~l~~~~~~I~~l~~v~~v--~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~d~~~e~~~l~k~l~~~~~~i~~~~~k 838 (861)
T TIGR00422 763 AERLKLNAVDIKGAINFSEV--EVVIEKP--EVTEAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGK 838 (861)
T ss_pred HHHHHHHHHHHhhhcCCCce--EeeccCC--ccccceEEEccCcEEEEEhHhhcCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888999999888654 3332222 1233333556789999999999999999999999999999999999999
Q ss_pred hcCcchhccCCHHHHHHHHHHHH
Q 003160 797 LSSSKFVEKAPEDVVRGVQEKAA 819 (843)
Q Consensus 797 l~n~~f~~kap~~vv~~~~~kl~ 819 (843)
|+|++|++|||++||+++++||+
T Consensus 839 l~n~~f~~kAp~~vv~~e~~kl~ 861 (861)
T TIGR00422 839 LENEGFVKKAPKEVIEKEKEKLE 861 (861)
T ss_pred hcCchhhhcCCHHHHHHHHhhcC
Confidence 99999999999999999999974
No 8
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.5e-179 Score=1627.30 Aligned_cols=814 Identities=43% Similarity=0.793 Sum_probs=740.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHH-HcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA-AEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~-~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||++||+.+. ++|++++++||++|+++||+|++++++.|++||++||+|+||+|+
T Consensus 77 ~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~ 156 (1052)
T PRK14900 77 LIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRE 156 (1052)
T ss_pred HHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCC
Confidence 5899999999999999999999999999999884 578999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc-cCCeEEEEEEEecCCCeEEEEEeCCccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGRSDFLTIATTRPET 158 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~~~~~~~~~~l~v~TtrPeT 158 (843)
|+||||+|+++|+|+|.+||++|||||+.++|+|||.|+|+|||+||+|++ ..+.++||+|++.+++.+|+||||||||
T Consensus 157 ~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~~~~l~vaTTrPeT 236 (1052)
T PRK14900 157 RFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADGSGEIVVATTRPET 236 (1052)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCCCcEEEEEECchhh
Confidence 999999999999999999999999999999999999999999999999998 7889999999998877899999999999
Q ss_pred cccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCC-CCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCC
Q 003160 159 LFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDK-YVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD 237 (843)
Q Consensus 159 l~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~ 237 (843)
|+||+||||||+|+||++|+|++|.|||. ++.+|||++. ||++++|||+||+|||||++||++|++||||+++++|++
T Consensus 237 l~~~~avaV~P~~~~y~~L~G~~~~~Pl~-~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~ 315 (1052)
T PRK14900 237 MLGDTAVAVHPLDPRYMALHGKKVRHPIT-GRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPD 315 (1052)
T ss_pred hhcceeEEECCCcHHHHHhcCCEEECCCC-CCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCC
Confidence 99999999999999999999999999994 8999999875 899999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 238 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 238 G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
|+|++++|.|.|++++|||+.|++.|+++|++++.++|.|+||||||||+||++++++||||++++++++++++++++++
T Consensus 316 G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 316 GRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT 395 (1052)
T ss_pred cEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 318 TIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 318 ~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
+|+|+.+++++.+||++++||||||||+||||||+|+|++ +.++++......++ .|+ +..+.|++||||||||
T Consensus 396 ~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~--~~~~v~~~~~~~~~----~~~-~~~~~~~~dVlDvWFd 468 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD--GHVTVARETPEACS----TCG-KAELRQDEDVLDTWFS 468 (1052)
T ss_pred EEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC--CcEEeccccccccc----ccC-ccceecCCceEEEEEc
Confidence 9999999999999999999999999999999999999953 45666654332211 222 3358899999999999
Q ss_pred cCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCcc
Q 003160 398 SALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 477 (843)
Q Consensus 398 S~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI 477 (843)
|++||++++|||.+. ++|++|||+|++++|+||++||+++|+++++.+++..||++|++||||+|.+|+|||||+||||
T Consensus 469 S~l~y~s~~g~p~~~-~~~~~~~P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvI 547 (1052)
T PRK14900 469 SGLWPFSTMGWPEQT-DTLRTFYPTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVI 547 (1052)
T ss_pred CChHHHHHHcCCCch-HHHHhhCCchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCC
Confidence 999999999999875 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhc
Q 003160 478 DPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 556 (843)
Q Consensus 478 ~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (843)
||.++|++||+|+|||||++.++ ++|++|+++.++..++|+|++||+.||+.+++.++.... . .....
T Consensus 548 dP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~---------~--~~~~~ 616 (1052)
T PRK14900 548 DPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERG---------E--DPARL 616 (1052)
T ss_pred CHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc---------c--ccccc
Confidence 99999999999999999999877 999999999999999999999999999987665442100 0 00012
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHH
Q 003160 557 KAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENIL 636 (843)
Q Consensus 557 ~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l 636 (843)
.++..|+||+++++.++++++++|++|+|+.|++.+++|+|+++|||||+.+|++++++ +...+..++.+++.+|..++
T Consensus 617 ~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~-~~~~~~~~~~~L~~~L~~l~ 695 (1052)
T PRK14900 617 ARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE-DPEARRSVQAVLVHCLQTSY 695 (1052)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccC-CHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999998875 44455678889999999999
Q ss_pred HHhCCCchhhHHHHHHHhccC------CCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCcccee----
Q 003160 637 KLLHPFMPFVTEELWQSLRKR------KEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRI---- 706 (843)
Q Consensus 637 ~LL~P~~P~iaEeiw~~L~~~------~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~---- 706 (843)
+||||||||+||+||+.|+.. .+||+.++||+.+. .|++++..|+.++++++.||++|++++|+++.++
T Consensus 696 ~LLaPfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~-~d~~~e~~~~~v~~ii~~iR~~R~~~~i~~~~~l~~~~ 774 (1052)
T PRK14900 696 RLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE-ADEAAEAAFRPVLGIIDAVRNIRGEMGIPWKVKLGAQA 774 (1052)
T ss_pred HHHHhHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccCCCC
Confidence 999999999999999999742 25899999999875 6788999999999999999999999999999998
Q ss_pred eEEEe-cCHHHHHHHHH-HHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHH
Q 003160 707 SASIV-ANEEVIQYISK-EKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLS 784 (843)
Q Consensus 707 ~~~i~-~~~~~~~~~~~-~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~ 784 (843)
.+.+. .+.+....++. ...+|..|++++.. .++...++.+.++...++..++++|+++.|.||+++|++||+|+++
T Consensus 775 ~~~v~~~~~~~~~~l~~~~~~~i~~l~~~~~v--~~~~~~~~~~~~~~~~~v~~~~ev~l~l~~~iD~~~e~~rLekel~ 852 (1052)
T PRK14900 775 PVEIAVADPALRDLLQAGELARVHRVAGVEGS--RLVVAAATAPAPQSAVGVGPGFEVRVPLAGVIDLAAETARVDKEIG 852 (1052)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHHHhhCCCee--EeeccccccCcccceEEecCceEEEEECCcccCHHHHHhhHHHHHH
Confidence 56665 45555667777 78899999988654 3432211112234444566789999999999999999999999999
Q ss_pred HHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 785 KMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 785 ~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++++++++++++|+|++|+.+||+++|+++++++++++++++++++.|+.|+.-
T Consensus 853 kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~~ 906 (1052)
T PRK14900 853 KVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSGS 906 (1052)
T ss_pred HHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999873
No 9
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-162 Score=1480.15 Aligned_cols=748 Identities=27% Similarity=0.483 Sum_probs=663.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||.+|||.+...++ ..+++|+++|+++|++|+.++++.|++||++||+|+||+|+
T Consensus 70 i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~ 149 (975)
T PRK06039 70 VPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNP 149 (975)
T ss_pred HHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCC
Confidence 58999999999999999999999999999987733322 34679999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccc--ccccCCeEEEEEEEecC-CCeEEEEEeCCc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAG-RSDFLTIATTRP 156 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~~~~~~~-~~~~l~v~TtrP 156 (843)
|+||||.|+++|+|+|.+||++||||||.++|+|||+|+|+|||+||+ |++..++++||+|++.+ ++.+|+||||||
T Consensus 150 y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~l~~~~~~~l~i~TTrP 229 (975)
T PRK06039 150 YKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFKLKGEENEYLLAWTTTP 229 (975)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCceEEEEEEecCCCCCEEEEEECCc
Confidence 999999999999999999999999999999999999999999999999 99999999999999964 568999999999
Q ss_pred cccccCcEEEEcCCC---------chh-----------------------hhhcccEEEcCCCC--C--CeeeEEeCCCC
Q 003160 157 ETLFGDVALAVNPQD---------EHY-----------------------SQFIGMMAIVPMTY--G--RHVPIISDKYV 200 (843)
Q Consensus 157 eTl~g~~ai~v~P~~---------~~y-----------------------~~l~g~~~~~P~~~--~--~~ipii~~~~V 200 (843)
||||||+||||||++ ++| ++|+|++|.|||.. + +.+|||+++||
T Consensus 230 ~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V 309 (975)
T PRK06039 230 WTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFV 309 (975)
T ss_pred cccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCccccCCEEECCcccccCCcceeEEEecCcc
Confidence 999999999999998 566 78999999999952 3 47999999999
Q ss_pred CccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCC
Q 003160 201 DKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 280 (843)
Q Consensus 201 ~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p 280 (843)
++++|||+||+|||||++||++|++||||+++++|++|+|++.+|+|+|+.++|||++|++.|+++|++++.+++.|+||
T Consensus 310 ~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p 389 (975)
T PRK06039 310 TTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYP 389 (975)
T ss_pred CCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhHH-HHHHHhhCCCceeeeeecccCCCCceEEEcCCc
Q 003160 281 RSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEK-IYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKE 359 (843)
Q Consensus 281 ~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~ 359 (843)
||||||+||++++++||||++++++++++++++ +++|+|+..++ ++.+||++++||||||||+||||||+|+|++ +
T Consensus 390 ~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~-~ 466 (975)
T PRK06039 390 HCWRCDTPLIYYATESWFIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCED-C 466 (975)
T ss_pred EeCCCCCEEEEEecCeeeEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecC-C
Confidence 999999999999999999999999999999985 48999999988 9999999999999999999999999999965 5
Q ss_pred ccEEEecChhHHHHHHhh-----------------hcCCCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcCCC
Q 003160 360 EEYIVARNADEALEKAHQ-----------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPT 422 (843)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~ 422 (843)
+.+++.++..++...... .|+++..++|++||||||||||+||++++|||.++++.|++|||+
T Consensus 467 g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f~~~~Pa 546 (975)
T PRK06039 467 GRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWFEKHFPA 546 (975)
T ss_pred CeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeecCCccHHHhCCcccChhhhhccCCc
Confidence 678888887776533211 122244689999999999999999999999998765679999999
Q ss_pred cEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-c
Q 003160 423 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G 501 (843)
Q Consensus 423 d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~ 501 (843)
|++++|+||+|||+++|+++|+.+++..||++|++||+|+|.+|+|||||+||+|+|.+++++||+|++||||++.++ +
T Consensus 547 d~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~ 626 (975)
T PRK06039 547 DFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPW 626 (975)
T ss_pred eEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred cccccCHHH-HHHHHHHHHHHHHHHHHHHh--cCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHH
Q 003160 502 QDLSLSIER-LTANKAFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTA 578 (843)
Q Consensus 502 ~D~~f~~~~-~~~~~~~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~ 578 (843)
+|++|+++. +...+++++++||+++|+.. ++.++.... . ......++..|+||+++++.+++.+++
T Consensus 627 ~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~---------~--~~~~~~~~~~D~wils~l~~li~~v~~ 695 (975)
T PRK06039 627 EDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPP---------A--EDEVDSLNELDRWILSRLNSLVKEVTE 695 (975)
T ss_pred CCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc---------c--ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 66689999999999999763 333321100 0 001123567899999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcc--
Q 003160 579 SYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK-- 656 (843)
Q Consensus 579 ~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~-- 656 (843)
+|++|+|+.|++.+++|+ +++||||++.+|++++...+...+..++.+|+.+|..+++||||||||+||+||+.|+.
T Consensus 696 a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~ 774 (975)
T PRK06039 696 ALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTRED 774 (975)
T ss_pred HHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccC
Confidence 999999999999999999 89999999999999887644445677889999999999999999999999999999984
Q ss_pred CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-cCHHHHHHHHHHHHHHHHHcCCc
Q 003160 657 RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISKEKEVLALLSRLD 734 (843)
Q Consensus 657 ~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~ 734 (843)
..+||+.++||+++. +.|++++..|+.++++++.+|++|++.+++.+++++..++ ++.+....++....+|+.+.++.
T Consensus 775 ~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~i~~~~pl~~~~v~~~~~~~~~~~~~~~~i~~~~nv~ 854 (975)
T PRK06039 775 APESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKKAGIKVRQPLSKITVAEDEEVAEALERYEDLIKDELNVK 854 (975)
T ss_pred CCCeeEecCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceEEEecCHHHHHHHHHHHHHHHHHhCcc
Confidence 456999999999884 7789999999999999999999999999999999987655 44435566777778888887775
Q ss_pred cc--ceeecCCCCCCCCCceEEEecCCeEEEecCC
Q 003160 735 LL--NVHFTESPPGDANQSVHLVASEGLEAYLPLA 767 (843)
Q Consensus 735 ~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 767 (843)
.. ++.+... .+++.... ..+++.|+|++.
T Consensus 855 ~v~~~~~~~~~---~~~~~~~~-~~~~~~v~ld~~ 885 (975)
T PRK06039 855 EVPEEVEIEEE---APEGYAAA-EEGGGTVALDTE 885 (975)
T ss_pred cchhheEEEEe---cCCCceEE-eeCCEEEEEECC
Confidence 43 2223212 23444443 346788888754
No 10
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=2.3e-161 Score=1469.10 Aligned_cols=728 Identities=21% Similarity=0.375 Sum_probs=640.1
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI-KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~-~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||.+|||.|...+. ...++|+++|+++|++|+.++++.+++|+++||+|+||+++
T Consensus 131 i~Ry~rm~G~~V~~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~ 210 (1205)
T PTZ00427 131 VTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKND 210 (1205)
T ss_pred HHHHHHcCCCeeccCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCC
Confidence 58999999999999999999999999999998733222 33469999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccc--cccccCCeEEEEEEEecCC------------
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR------------ 145 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~------------ 145 (843)
|+||||.|.++|+|+|.+||++||||||.++|+|||+|+|+|||+|| +|++..++++||+|++.+.
T Consensus 211 y~T~d~~~~~~v~~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F~l~~~~~~~~~~~~~~~ 290 (1205)
T PTZ00427 211 YKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPSIIISFVLCSDFPKVEEECNIEE 290 (1205)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCceEEEEeecccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999 7999999999999988641
Q ss_pred -----------------------------------CeEEEEEeCCccccccCcEEEEcCCCc--hh--------------
Q 003160 146 -----------------------------------SDFLTIATTRPETLFGDVALAVNPQDE--HY-------------- 174 (843)
Q Consensus 146 -----------------------------------~~~l~v~TtrPeTl~g~~ai~v~P~~~--~y-------------- 174 (843)
+.+++||||||||||||+||||||+++ +|
T Consensus 291 ~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~ 370 (1205)
T PTZ00427 291 DKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKSNRVVIVGEC 370 (1205)
T ss_pred cccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecCCCeEEEEehH
Confidence 368999999999999999999999965 11
Q ss_pred ------------------------hhhcccEEEcCCC--------CCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHH
Q 003160 175 ------------------------SQFIGMMAIVPMT--------YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL 222 (843)
Q Consensus 175 ------------------------~~l~g~~~~~P~~--------~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~ 222 (843)
++|+|.+|.+|+. .++.+|||+|+||++++|||+||+|||||++||++
T Consensus 371 ~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v 450 (1205)
T PTZ00427 371 RLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRV 450 (1205)
T ss_pred HHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEEEccCccCCCCCceeeEecCCCChhHHHH
Confidence 2467888998872 16789999999999999999999999999999999
Q ss_pred HHHhCC--C----ceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccc
Q 003160 223 ARKLGL--P----ILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQ 296 (843)
Q Consensus 223 ~~~~~l--~----~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~Q 296 (843)
|++||| | +++++|++|+|++++|+|+|+.++|||+.|++.|+++|+|++.+++.|+||||||||+||++++++|
T Consensus 451 ~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~Q 530 (1205)
T PTZ00427 451 CKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPA 530 (1205)
T ss_pred HHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecce
Confidence 999999 2 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecchHHHHHHHHHHcCCeeEecchh-HHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHH
Q 003160 297 WFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKA 375 (843)
Q Consensus 297 WFl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~ 375 (843)
||+++++++++++++. ++++|+|+++ +++|.+||++++|||||||||||||||+|+|+. ++.+++.++.+++....
T Consensus 531 WFI~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~-~~~~~~i~s~~el~~~~ 607 (1205)
T PTZ00427 531 WFIRVSNSTNELVKNN--ETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEK-METVICVESIKHLEELS 607 (1205)
T ss_pred eEEeCcHHHHHHHHcC--CccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCC-CCeEeccCCHHHHHHHh
Confidence 9999999999999866 4799999998 689999999999999999999999999999954 55677777776654322
Q ss_pred hh------------------hcCC-CceeEecCCCceEEEecCcccccccCCCCC-ChhhhhhcCCCcEEEEeehhhhhH
Q 003160 376 HQ------------------KYGK-NVEIYQDPDVLDTWFSSALWPFSTLGWPDV-SADDFKKFYPTTMLETGHDILFFW 435 (843)
Q Consensus 376 ~~------------------~~~~-~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~-~~~~~~~~~P~d~~~~G~Di~~~W 435 (843)
.. .+|. ...++|++||||||||||+||+++++||.+ .+++|+++||+|++++|+||+|||
T Consensus 608 ~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 608 GVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred ccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 10 0111 124899999999999999999999999985 357899999999999999999999
Q ss_pred HHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc--ccccccCHHHHH-
Q 003160 436 VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSIERLT- 512 (843)
Q Consensus 436 ~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~--~~D~~f~~~~~~- 512 (843)
+++|+++|++++|++||++|++||||+|++|+|||||+||||||.++|++||||+|||||++.+. ++|++|+++.+.
T Consensus 688 f~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl~Fse~~v~e 767 (1205)
T PTZ00427 688 FYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGVNE 767 (1205)
T ss_pred HHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998644 799999999986
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc--chhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003160 513 ANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKF--DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGR 590 (843)
Q Consensus 513 ~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~ 590 (843)
..++|++++||+++|+.+++.++...+. .++ .........+.+|+||+++++++++.++++|++|+|+.|++
T Consensus 768 ~~r~~l~klwN~~rF~~~~i~~~~~~~~------~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~A~~ 841 (1205)
T PTZ00427 768 VVKSFILPFYHSFRFFSQEVTRYECLNK------KQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLP 841 (1205)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccc------ccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5899999999999999887653221000 000 00000123466899999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC-------------
Q 003160 591 ETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR------------- 657 (843)
Q Consensus 591 ~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~------------- 657 (843)
.+++|++ ++|||||+++|++++.+.+..++..++.+|+++|..+++||||||||+||+||++|+..
T Consensus 842 ~i~~Fi~-~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~~~~~ 920 (1205)
T PTZ00427 842 KLLQFIE-NLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNENNETG 920 (1205)
T ss_pred HHHHHHH-HhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhcccccccccccccc
Confidence 9999996 69999999999999876334456788999999999999999999999999999999631
Q ss_pred ------------CCceEecCCCCCCC-c-CCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe--cCHHHHHHHH
Q 003160 658 ------------KEALIVSPWPQTSL-P-RHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV--ANEEVIQYIS 721 (843)
Q Consensus 658 ------------~~si~~~~~P~~~~-~-~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~--~~~~~~~~~~ 721 (843)
.+|||++.||+++. . +|+++++.|+.++++++.+|++|++.+++.++++...++ .+......++
T Consensus 921 ~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r~pl~~~~v~~~~~~~~~~~~ 1000 (1205)
T PTZ00427 921 NTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASKKPLKSITILHPNESYFKNFD 1000 (1205)
T ss_pred ccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccceeEEecCcHHHHHHHH
Confidence 25999999999885 3 689999999999999999999999999999999985533 3444556667
Q ss_pred HHHHHHHHHcCCcccceee
Q 003160 722 KEKEVLALLSRLDLLNVHF 740 (843)
Q Consensus 722 ~~~~~i~~l~~~~~~~v~~ 740 (843)
...++|+...++. +|.+
T Consensus 1001 ~~~~~i~~e~nv~--~v~~ 1017 (1205)
T PTZ00427 1001 QISNYIKEELNVL--NVEC 1017 (1205)
T ss_pred HHHHHHHHhhCcc--eEEE
Confidence 7778888776664 4444
No 11
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.1e-158 Score=1446.59 Aligned_cols=725 Identities=24% Similarity=0.389 Sum_probs=641.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCC----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIK----RVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDW 76 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~----~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw 76 (843)
++||+||+||+|+|+|||||||||||.+|||.+ |++ ..++|+++|+++|++|+.+|.+.+++|+++||+|+||
T Consensus 67 i~Ry~rm~G~~V~~~~GwD~hGlPiE~~vek~l---gi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~ 143 (1159)
T PLN02882 67 VTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKL---GIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDF 143 (1159)
T ss_pred HHHHHHcCCCcccccCccCCCCcHHHHHHHHHc---CCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEC
Confidence 589999999999999999999999999998776 543 3359999999999999999999999999999999999
Q ss_pred cCccccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccc--cccccCCeEEEEEEEecCCC--eEEEEE
Q 003160 77 TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRS--DFLTIA 152 (843)
Q Consensus 77 ~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~~--~~l~v~ 152 (843)
+|+|+||||.|.++|+|+|.+||++||||||.++|+|||.|+|+|||+|+ +|++..++++||+|++.++. .+++||
T Consensus 144 ~~~y~T~d~~~~~~v~~~f~~l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~l~~~~~~~~l~iw 223 (1159)
T PLN02882 144 ENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFPIVGDPDNASFVAW 223 (1159)
T ss_pred CCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcEEEEEEEecCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999888 79999999999999997643 799999
Q ss_pred eCCccccccCcEEEEcCCCc------------------hhh-------------------------------hhcccEEE
Q 003160 153 TTRPETLFGDVALAVNPQDE------------------HYS-------------------------------QFIGMMAI 183 (843)
Q Consensus 153 TtrPeTl~g~~ai~v~P~~~------------------~y~-------------------------------~l~g~~~~ 183 (843)
||||||||||+||||||+++ ||+ +|+|++|.
T Consensus 224 TTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~ 303 (1159)
T PLN02882 224 TTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYE 303 (1159)
T ss_pred eCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEEecchhhcCCEEE
Confidence 99999999999999999976 221 68899998
Q ss_pred cCCC-----CCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCC-----CceeeccCCCcccccCCCCCCCcHH
Q 003160 184 VPMT-----YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRF 253 (843)
Q Consensus 184 ~P~~-----~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~g~~~G~~~~ 253 (843)
+||. .++.+|||+++||++++|||+||+|||||++||++|++||| |+++++|++|+|++.+|.|.|+.++
T Consensus 304 p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~ 383 (1159)
T PLN02882 304 PLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVK 383 (1159)
T ss_pred CCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHH
Confidence 8872 14689999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchh-HHHHHHHh
Q 003160 254 EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWL 332 (843)
Q Consensus 254 ~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l 332 (843)
|||+.|++.|+++|++++.+.+.|+||||||||+|+++++++|||++++++++++++.. .+++|+|++. ++++.+||
T Consensus 384 eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~--~~i~w~P~~~~~~r~~~wl 461 (1159)
T PLN02882 384 DADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN--KQTYWVPDYVKEKRFHNWL 461 (1159)
T ss_pred HhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh--CCcEEECCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976 4699999999 58999999
Q ss_pred hCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHh-----------------hhcCC-CceeEecCCCceE
Q 003160 333 SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH-----------------QKYGK-NVEIYQDPDVLDT 394 (843)
Q Consensus 333 ~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~dvlD~ 394 (843)
++++||||||||+||||||+|+|++ ++.+++.++.+++..... ..+|. ...++|++|||||
T Consensus 462 ~~~~DW~ISRqR~WGtPIPvw~~~~-~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~ 540 (1159)
T PLN02882 462 ENARDWAVSRSRFWGTPLPIWISDD-GEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDC 540 (1159)
T ss_pred hcCcccceeeccccCCccceEEeCC-CCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchhceEecCceeee
Confidence 9999999999999999999999964 455777778776554321 11111 1368999999999
Q ss_pred EEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCC
Q 003160 395 WFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 474 (843)
Q Consensus 395 WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~G 474 (843)
|||||+||+++++||.++.++|+++||+|++++|+||+||||++|+++|++++|+.||++|++||||+|++|+|||||+|
T Consensus 541 WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vlde~G~KMSKSlG 620 (1159)
T PLN02882 541 WFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLAEDGKKMSKSLK 620 (1159)
T ss_pred eeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEECCCCCCcccCCC
Confidence 99999999999999987667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhHHHhhChhHHHHHHHhCCc--ccccccCHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccch
Q 003160 475 NVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDE 551 (843)
Q Consensus 475 NvI~p~dii~~yGaDalR~~l~~~~~--~~D~~f~~~~~~~-~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~ 551 (843)
|+|+|.+++++||||+|||||++++. ++|++|+++.+.. .+++++++||+++|+.+++.+..... ..++..
T Consensus 621 NvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~------~~~~~p 694 (1159)
T PLN02882 621 NYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEG------GAPFVP 694 (1159)
T ss_pred CCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------ccCCCc
Confidence 99999999999999999999998764 7999999999987 47799999999999988764321000 000000
Q ss_pred h--hhh-cCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHH
Q 003160 552 E--ECL-CKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVL 628 (843)
Q Consensus 552 ~--~~~-~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l 628 (843)
. ... ...+.+|+||+++++.+++.++++|++|+|+.|++.+++|++ ++|||||+.+|||++++.+..++++++.+|
T Consensus 695 ~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~~~~~~~~al~tL 773 (1159)
T PLN02882 695 LDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRTGEEDCRTALSTL 773 (1159)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCCChHHHHHHHHHH
Confidence 0 000 123568999999999999999999999999999999999985 699999999999999865555678899999
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHhcc----CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCcc
Q 003160 629 LYIFENILKLLHPFMPFVTEELWQSLRK----RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPA 703 (843)
Q Consensus 629 ~~~l~~~l~LL~P~~P~iaEeiw~~L~~----~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~ 703 (843)
+++|..+++||+|||||+||+||++|+. ..+|||++.||+++. +.|++++..|+.++++++.+|++|++.+++.+
T Consensus 774 ~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~~~~~ 853 (1159)
T PLN02882 774 YNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERIEQSVSRMQTVIELARNIRERHNKPLK 853 (1159)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999975 346999999999874 77899999999999999999999999999999
Q ss_pred ceeeEEEe--cCHHHHHHH-HHHHHHHHHHcCCcccceee
Q 003160 704 KRISASIV--ANEEVIQYI-SKEKEVLALLSRLDLLNVHF 740 (843)
Q Consensus 704 ~~~~~~i~--~~~~~~~~~-~~~~~~i~~l~~~~~~~v~~ 740 (843)
++++..++ .+.+....+ .....+|....++. +|.+
T Consensus 854 ~pl~~~~~~~~~~~~~~~~~~~~~~~i~~e~nv~--~v~~ 891 (1159)
T PLN02882 854 TPLKEMVVVHPDAEFLDDITGKLKEYVLEELNVR--SLVP 891 (1159)
T ss_pred CccceeeEecCCHHHHHHHHHHHHHHHHHhhCcc--eEEE
Confidence 99986544 344443333 45667777666654 4444
No 12
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-156 Score=1363.53 Aligned_cols=692 Identities=32% Similarity=0.537 Sum_probs=617.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
+.||++|+||+|.++|||||||||||.+||+++...+....++|.++|+++|++++.++.+.+++||+|||++.||+++|
T Consensus 78 I~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY 157 (933)
T COG0060 78 IVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPY 157 (933)
T ss_pred hhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCe
Confidence 57999999999999999999999999999998855445667899999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecC----CCeEEEEEeCCc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG----RSDFLTIATTRP 156 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~----~~~~l~v~TtrP 156 (843)
.|||+.|.+.++|+|.+|+++||||||.+||+|||+|+||||++||+|.++.++++||+|++.+ .+.+++||||||
T Consensus 158 ~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d~~dpSIyV~F~v~~~~~~~~~~lviWTTTP 237 (933)
T COG0060 158 KTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGDVKDPSIYVKFPVKDEGLDENAYLVIWTTTP 237 (933)
T ss_pred ecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccccCCceEEEEEEeccCCCCCCcEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975 468999999999
Q ss_pred cccccCcEEEEcCCCch---------h---------------------------hhhcccEEEcCCCC---CCeeeEEeC
Q 003160 157 ETLFGDVALAVNPQDEH---------Y---------------------------SQFIGMMAIVPMTY---GRHVPIISD 197 (843)
Q Consensus 157 eTl~g~~ai~v~P~~~~---------y---------------------------~~l~g~~~~~P~~~---~~~ipii~~ 197 (843)
||||+|.||||||+-++ | ++|.|..|.|||.. .+..||+.+
T Consensus 238 WTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~g 317 (933)
T COG0060 238 WTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILG 317 (933)
T ss_pred CCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEeEEeehhhhCCCEeeCCcccccccceeeEEec
Confidence 99999999999999652 1 46889999999953 599999999
Q ss_pred CCCCccCCCCeEEecCCCCHHhHHHHHHhC-CCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeecccc
Q 003160 198 KYVDKEFGTGVLKISPGHDHNDYLLARKLG-LPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHT 276 (843)
Q Consensus 198 ~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~-l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~ 276 (843)
+||+.+-|||+||++||||++||++|+++| ||++++||++|++++..+.|.|+.++||++.|++.|+++|.|++.+.+.
T Consensus 318 d~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~ 397 (933)
T COG0060 318 DHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIE 397 (933)
T ss_pred CeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEE
Confidence 999999999999999999999999999999 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEc
Q 003160 277 LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV 356 (843)
Q Consensus 277 ~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~ 356 (843)
|+|||||||++||++|.++|||++++++++++++.++ +++|+|++.++++.+||++++||||||||+||+|||+|+|+
T Consensus 398 HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~ 475 (933)
T COG0060 398 HSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCK 475 (933)
T ss_pred eCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEEC
Confidence 9999999999999999999999999999999998886 69999999999999999999999999999999999999996
Q ss_pred CCcccEEEecChhHHHHHHh-----------------h---hc-CCCceeEecCCCceEEEecCcccccccCCCCCChhh
Q 003160 357 GKEEEYIVARNADEALEKAH-----------------Q---KY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 415 (843)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~-----------------~---~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~ 415 (843)
+ ++...+. .+|+.+... + .+ .++..++|.+||||||||||..|+++++ |.+. ..
T Consensus 476 ~-~g~~~~~--~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~-~~ 550 (933)
T COG0060 476 E-TGEILVI--TEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN-LK 550 (933)
T ss_pred C-CCCeecc--HHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc-cc
Confidence 5 4444442 222211110 0 11 2244899999999999999999999888 6654 33
Q ss_pred hhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHH
Q 003160 416 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI 495 (843)
Q Consensus 416 ~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l 495 (843)
|..++ +|++++|+||+|+||.++++.|.++.|+.||++|++|||++|++|+|||||+||+|+|.+++++||||+||||+
T Consensus 551 ~~~~~-aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv 629 (933)
T COG0060 551 FPALF-ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWV 629 (933)
T ss_pred Ccccc-CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCccccCCCcCCHHHHHHhhCchheeeee
Confidence 44444 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHH
Q 003160 496 SLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDT 575 (843)
Q Consensus 496 ~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~ 575 (843)
++++++.|+.||++.++..++.+++|||++||+++|+.++++... .....++..+|+||+++++.+++.
T Consensus 630 ~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~-----------~~~~~~~~~~Drwil~rl~~l~~~ 698 (933)
T COG0060 630 ASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKD-----------AVLPEELRELDRWILSRLNSLVKE 698 (933)
T ss_pred eecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc-----------ccchhhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988876211 112245678999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccC-CChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 003160 576 VTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRS-EYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 576 v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~-~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L 654 (843)
++++|++|+|+++++.+++|+..++++|||+++|+|+|++ .+..+|++++++|+++|..++++|+||+||+||+||+.|
T Consensus 699 v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPftaEeiw~~l 778 (933)
T COG0060 699 VREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNL 778 (933)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhC
Confidence 9999999999999999999998999999999999999998 667799999999999999999999999999999999999
Q ss_pred ccC--CCceEecCCCCCCC-cC--CHHHHHHHHHHHHHH----HHHHhhhhhcCCCccceeeEEEe
Q 003160 655 RKR--KEALIVSPWPQTSL-PR--HMSAIKRFENLQSLT----RAIRNARAEYSVEPAKRISASIV 711 (843)
Q Consensus 655 ~~~--~~si~~~~~P~~~~-~~--d~~~~~~~~~~~~vv----~~ir~~r~~~~i~~~~~~~~~i~ 711 (843)
++. .+|||+++||+... .. +.......+..+++- ..+...|.+.-|.....++..+.
T Consensus 779 ~~~~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~~~~I~~~lnak~~~~ 844 (933)
T COG0060 779 PGERKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARLEKVIGSSLNAKVVIY 844 (933)
T ss_pred ccCCCCceeEeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcceeEEEEe
Confidence 877 68999999999874 33 333444444444443 33344454445665555555555
No 13
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-155 Score=1408.13 Aligned_cols=708 Identities=30% Similarity=0.495 Sum_probs=629.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+|||.+ |+.+.++++++|+++|++|++++++.|++||++||+++||+|+|
T Consensus 78 i~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l---~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~ 154 (912)
T PRK05743 78 IVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKL---GKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPY 154 (912)
T ss_pred HHHHHHccCCcccCCCCcCCCccHhHHHHHHHc---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCc
Confidence 589999999999999999999999999998865 56678899999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCC-------CeEEEEEe
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR-------SDFLTIAT 153 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~-------~~~l~v~T 153 (843)
+||||.|.++|+|+|.+|+++||||||.+||+|||.|+|+|||+||+|++..+.++||+|++.+. +.+++|||
T Consensus 155 ~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~yv~f~l~~~~~~~~~~~~~l~i~T 234 (912)
T PRK05743 155 LTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSIYVAFPVVDGKLAAAFKDASLVIWT 234 (912)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceEEEEEEecCcchhcccCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999763 37999999
Q ss_pred CCccccccCcEEEEcCCCc---------hh---------------------------hhhcccEEEcCCCCCCeeeEEeC
Q 003160 154 TRPETLFGDVALAVNPQDE---------HY---------------------------SQFIGMMAIVPMTYGRHVPIISD 197 (843)
Q Consensus 154 trPeTl~g~~ai~v~P~~~---------~y---------------------------~~l~g~~~~~P~~~~~~ipii~~ 197 (843)
|||||||||+||||||+++ +| ++|+|++|.|||. ++.+|||++
T Consensus 235 TrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~Pl~-~~~~pvi~~ 313 (912)
T PRK05743 235 TTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFKGKELEGLVAQHPFY-DRDSPVILG 313 (912)
T ss_pred CCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEechHhhcCCEEECCCC-CCeeeEeCC
Confidence 9999999999999999984 66 4789999999995 899999999
Q ss_pred CCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccc
Q 003160 198 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTL 277 (843)
Q Consensus 198 ~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~ 277 (843)
+||++++|||+||+|||||++||++|++||||+++++|++|+|++.+|+|.|++++|||++|++.|+++|++++.+++.|
T Consensus 314 ~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h 393 (912)
T PRK05743 314 DHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITH 393 (912)
T ss_pred CccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCCCeeEEeeccceeEecch--HHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEE
Q 003160 278 RVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYI 355 (843)
Q Consensus 278 ~~p~~~r~g~~v~~~~~~QWFl~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~ 355 (843)
+||||||||+||++++++|||+++++ ++++++++++ +++|+|++.++++.+||++++||||||||+||||||+|+|
T Consensus 394 ~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~ 471 (912)
T PRK05743 394 SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYH 471 (912)
T ss_pred cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEE
Confidence 99999999999999999999999998 9999999996 4999999999999999999999999999999999999999
Q ss_pred cCCcccEEEecChhHH----HHHHhh----------hcC-CCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcC
Q 003160 356 VGKEEEYIVARNADEA----LEKAHQ----------KYG-KNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFY 420 (843)
Q Consensus 356 ~~~~~~~~~~~~~~~~----~~~~~~----------~~~-~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~ 420 (843)
++ ++..++..+.... .+.... -++ ++..+.|++||||||||||+++++.+++. . +++|
T Consensus 472 ~~-~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~~----~--~~~~ 544 (912)
T PRK05743 472 KE-TGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQR----P--ELGY 544 (912)
T ss_pred CC-CCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcCc----c--ccCC
Confidence 64 4444442221111 111000 011 13468999999999999999999888751 1 2689
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
|+|++++|+||+|||++++++.++.+.|..||++|++||||+|.+|+|||||+||||+|.+++++||||+||||++++++
T Consensus 545 P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll~~~~ 624 (912)
T PRK05743 545 PADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVASTDY 624 (912)
T ss_pred CceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998555
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
++|++|+++.+.+.++++++|||++||+++++.++.+... ..+...+...|+|++++++.++++++++|
T Consensus 625 ~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~-----------~~~~~~l~~~D~~il~~l~~~~~~v~~~~ 693 (912)
T PRK05743 625 SGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKD-----------AVPYEELLELDRWALHRLAELQEEILEAY 693 (912)
T ss_pred CCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccc-----------cCCchhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998866432000 00012356789999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhc-cCC
Q 003160 581 DKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR-KRK 658 (843)
Q Consensus 581 e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~-~~~ 658 (843)
++|+|+.|++.+++|+++++||+|++.+|||+|+.. +...+++++.+|+.+++.+++||+|||||+|||||++|+ +..
T Consensus 694 e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~l~~~~~ 773 (912)
T PRK05743 694 ENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLPGERE 773 (912)
T ss_pred HhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999998763 233567888999999999999999999999999999996 345
Q ss_pred CceEecCCCCCCC-cCCHHHHHHHHHHH----HHHHHHHhhhhhcCCCccceeeEEEecCHHHHHHHHHHHHHHHHHcCC
Q 003160 659 EALIVSPWPQTSL-PRHMSAIKRFENLQ----SLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRL 733 (843)
Q Consensus 659 ~si~~~~~P~~~~-~~d~~~~~~~~~~~----~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~ 733 (843)
+||+.+.||+.+. +.|+.++..++.++ +++.++|..|++..|+++.++.+.+..+. +.+......|..+..+
T Consensus 774 ~sv~~~~wP~~~~~~~~~~~~~~~~~~~~~r~~v~~~i~~~r~~~~i~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~v 850 (912)
T PRK05743 774 ESVFLEEWPEVPELADDEELLAKWEELLEVRDEVNKALEEARKEKVIGSSLEAEVTLYADA---ALLESLGDELRFLLIV 850 (912)
T ss_pred CceEEecCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceEEEEEcCH---HHHHHHHHHHHHHhhh
Confidence 6999999999874 67888888899887 58899999999999998888887776443 3344443455555555
Q ss_pred cc
Q 003160 734 DL 735 (843)
Q Consensus 734 ~~ 735 (843)
+.
T Consensus 851 s~ 852 (912)
T PRK05743 851 SQ 852 (912)
T ss_pred Cc
Confidence 43
No 14
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-154 Score=1404.55 Aligned_cols=711 Identities=26% Similarity=0.408 Sum_probs=626.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+|++.+..+|+.++++++++|+++|++|+.++++.|++||++||+++||+|+|
T Consensus 83 i~Ry~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y 162 (961)
T PRK13804 83 IVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPY 162 (961)
T ss_pred HHHHHHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCc
Confidence 58999999999999999999999999999998877888899999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCC------CeEEEEEeC
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGR------SDFLTIATT 154 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~------~~~l~v~Tt 154 (843)
+||||.|+++|+|+|.+|+++||||||.+||+|||.|+|||||+||+|++..+.++||+|++.++ +.+++||||
T Consensus 163 ~T~d~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~~~s~~~~v~F~~~~~~~~~~~~~~lviwTT 242 (961)
T PRK13804 163 TTMDFHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHDIESDTIWVKFPVKDGKGILDSGTYVVIWTT 242 (961)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccccccCceEEEEEEecCcccccCCCCeEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999653 479999999
Q ss_pred CccccccCcEEEEcCCCc-------------------h-------------------hh--------hhcccEEEcCCCC
Q 003160 155 RPETLFGDVALAVNPQDE-------------------H-------------------YS--------QFIGMMAIVPMTY 188 (843)
Q Consensus 155 rPeTl~g~~ai~v~P~~~-------------------~-------------------y~--------~l~g~~~~~P~~~ 188 (843)
||||||||+||||||+++ + |+ +|+|++|.|||.
T Consensus 243 tPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~- 321 (961)
T PRK13804 243 TPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLD- 321 (961)
T ss_pred CchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHHHHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCC-
Confidence 999999999999999973 3 23 689999999995
Q ss_pred CC-----eeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCC-CceeeccCCCcccccCCC--------CCCCcHHH
Q 003160 189 GR-----HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-PILNVMNKDGTLNEVAGL--------FRGLDRFE 254 (843)
Q Consensus 189 ~~-----~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-~~~~~i~~~G~~~~~~g~--------~~G~~~~~ 254 (843)
++ .+|||+++||++++|||+||+|||||++||++|++||| |+++++|++|+|++++|. |.|+.++|
T Consensus 322 ~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~e 401 (961)
T PRK13804 322 GLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGD 401 (961)
T ss_pred CcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhh
Confidence 77 89999999999999999999999999999999999999 999999999999988887 89999999
Q ss_pred HHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecch-------HHHHHHHHHHcCCeeEecchhHHH
Q 003160 255 ARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP-------LAEKALHAVEKGELTIMPERFEKI 327 (843)
Q Consensus 255 ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~-------~~~~~~~~~~~~~~~~~P~~~~~~ 327 (843)
||+.|++.|+++|++++.+++.|+||||||||+||++++++|||+++++ ++++++++++ +++|+|++.+++
T Consensus 402 a~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r 479 (961)
T PRK13804 402 ANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNR 479 (961)
T ss_pred hhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 9999999996 599999999999
Q ss_pred HHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecCh-h---HHHHH--------------HhhhcCCCceeEecC
Q 003160 328 YNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA-D---EALEK--------------AHQKYGKNVEIYQDP 389 (843)
Q Consensus 328 ~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~-~---~~~~~--------------~~~~~~~~~~~~~~~ 389 (843)
+.+||++++||||||||+||||||+|||++ +..++.... . +.... ....++++..++|++
T Consensus 480 ~~~~i~~~~DWcISRQR~WG~PIP~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~r~~ 557 (961)
T PRK13804 480 LYNMIEDRPDWVISRQRAWGVPIPIFVAED--GEILMDEEVNARIADAFEEEGADAWFAEGAKERFLGGFHPNGEFTKVT 557 (961)
T ss_pred HHHHHhcCccceeeeeccCCceeeEEEcCC--CCEeccHHHHHHHHHHHHhcCCccccccCHHHhcCcccCcccceEecC
Confidence 999999999999999999999999999952 333221111 1 11100 001111234689999
Q ss_pred CCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcc
Q 003160 390 DVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKM 469 (843)
Q Consensus 390 dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KM 469 (843)
||||||||||++++..+++ +++| .||+|++++|+||+||||+++++++..++|..||++|++||||+|.+|+||
T Consensus 558 DvlDvWFdSg~s~~~~~~~----~~~~--~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KM 631 (961)
T PRK13804 558 DILDVWFDSGSTHAFVLED----RPDL--KWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKM 631 (961)
T ss_pred cceeeeecCCCCccccccC----Cccc--CCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCc
Confidence 9999999999877554432 1334 589999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccChhhHHHhhChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 003160 470 SKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 549 (843)
Q Consensus 470 SKS~GNvI~p~dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~ 549 (843)
|||+||||+|.+++++||||+||||++++.+++|++|+++.+..+++++++|||++||+++++.++.+...
T Consensus 632 SKSlGNvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~--------- 702 (961)
T PRK13804 632 SKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGED--------- 702 (961)
T ss_pred cCCCCCcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc---------
Confidence 99999999999999999999999999986559999999999999999999999999999998876543100
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHH
Q 003160 550 DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVL 628 (843)
Q Consensus 550 ~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l 628 (843)
......+...|+|++++++.++++++++|++|+|++|++.+++|+++++||+||+.+|||+|++. +...+++++.+|
T Consensus 703 --~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL 780 (961)
T PRK13804 703 --VVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVF 780 (961)
T ss_pred --cCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHH
Confidence 00112456789999999999999999999999999999999999989999999999999999863 334567889999
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHhcc-CCCceEecCCCCCCC-cCCHHHHHHHHHHHH---H-HHHHHhhhhhcCCCc
Q 003160 629 LYIFENILKLLHPFMPFVTEELWQSLRK-RKEALIVSPWPQTSL-PRHMSAIKRFENLQS---L-TRAIRNARAEYSVEP 702 (843)
Q Consensus 629 ~~~l~~~l~LL~P~~P~iaEeiw~~L~~-~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~---v-v~~ir~~r~~~~i~~ 702 (843)
+.+++.+++||+|||||+|||||++|++ ..+||+.+.||+.+. +.|++++..++.++. + ..++|++|++..|++
T Consensus 781 ~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d~~~~~~~~~~~~~r~~v~~~le~~R~~~~i~~ 860 (961)
T PRK13804 781 YEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDVVTGALEEERAAKRIGS 860 (961)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999984 346999999999874 668888777665555 4 478999999999999
Q ss_pred cceeeEEEe-cCHHHHHHHHHHHHHHHHHcCCcc
Q 003160 703 AKRISASIV-ANEEVIQYISKEKEVLALLSRLDL 735 (843)
Q Consensus 703 ~~~~~~~i~-~~~~~~~~~~~~~~~i~~l~~~~~ 735 (843)
+..+.+.+. .+.+..+.+... .|..|..++.
T Consensus 861 ~~e~~v~l~~~~~~~~~~l~~~--~l~~~~~vs~ 892 (961)
T PRK13804 861 SLEAAPTVYIADPELLAALEGL--DFAEICITSQ 892 (961)
T ss_pred CcceeEEEEcCCHHHHHHHHHH--HHHHHhhhCc
Confidence 888888776 443444444443 2555555543
No 15
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3e-154 Score=1401.59 Aligned_cols=713 Identities=26% Similarity=0.440 Sum_probs=621.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+||+.+.+ .+++++++++|+++|++|++++++.|++||++||+++||+|+|
T Consensus 61 i~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~--~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y 138 (974)
T PLN02843 61 INRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQ--EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPY 138 (974)
T ss_pred HHHHHHhcCCccccCCccCCCCcHHHHHHHHHhch--hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCC
Confidence 58999999999999999999999999999887732 2567899999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc-cCCeEEEEEEEecCC-------------C
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGR-------------S 146 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~-~~~~~~~~~~~~~~~-------------~ 146 (843)
+||||.|.++|+|+|.+|+++||||||.+||+|||+|+|||||+||+|++ ..++++||+|++.++ +
T Consensus 139 ~T~d~~~~~~v~~~f~~l~~~GlIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~ 218 (974)
T PLN02843 139 LTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPG 218 (974)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999997 579999999999753 1
Q ss_pred eEEEEEeCCccccccCcEEEEcCCCc-------------h----------------------------------------
Q 003160 147 DFLTIATTRPETLFGDVALAVNPQDE-------------H---------------------------------------- 173 (843)
Q Consensus 147 ~~l~v~TtrPeTl~g~~ai~v~P~~~-------------~---------------------------------------- 173 (843)
.+++||||||||||||+||||||+++ |
T Consensus 219 ~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~ 298 (974)
T PLN02843 219 LSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKL 298 (974)
T ss_pred ceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCce
Confidence 48999999999999999999999954 1
Q ss_pred -------hhhhcccEEEcCCCCCCeeeEEe-CCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCC
Q 003160 174 -------YSQFIGMMAIVPMTYGRHVPIIS-DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG 245 (843)
Q Consensus 174 -------y~~l~g~~~~~P~~~~~~ipii~-~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g 245 (843)
+++|+|++|.|||. ++.+|||. ++||++++|||+||+|||||++||++|++||||+++++|++|+|++++|
T Consensus 299 ~~~~~~~g~~L~g~~~~~P~~-~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~ 377 (974)
T PLN02843 299 VVLKTFPGSDLEGCRYIHPLY-NRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAG 377 (974)
T ss_pred EEEeeechHHcCCCEEECCCC-CCceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCc
Confidence 26799999999994 78999975 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHH-HHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchh
Q 003160 246 LFRGLDRF-EARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF 324 (843)
Q Consensus 246 ~~~G~~~~-~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~ 324 (843)
.|+|+.++ |||+.|++.|+++|++++.+++.|+||||||||+||++|+++|||+++++++++++++++ +++|+|+..
T Consensus 378 ~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~ 455 (974)
T PLN02843 378 QFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQG 455 (974)
T ss_pred ccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHH
Confidence 99999998 899999999999999999999999999999999999999999999999999999999996 599999999
Q ss_pred HHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEE-ecChhHHHH---HH--------------hhhc-CCCcee
Q 003160 325 EKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIV-ARNADEALE---KA--------------HQKY-GKNVEI 385 (843)
Q Consensus 325 ~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~-~~~~~~~~~---~~--------------~~~~-~~~~~~ 385 (843)
++++.+||++++||||||||+||||||+|+|.+ ++..+. ..+..+..+ .. +..+ ++...+
T Consensus 456 ~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~-~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~ 534 (974)
T PLN02843 456 ENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVE-TKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDY 534 (974)
T ss_pred HHHHHHHHhcCcceeeeeccccccEEEEEEEcC-CCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhh
Confidence 999999999999999999999999999999954 333322 222222111 10 1111 123358
Q ss_pred EecCCCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCC
Q 003160 386 YQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ 465 (843)
Q Consensus 386 ~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~ 465 (843)
.|++||||||||||+++.+.+++. .+.+||+|++++|+||+||||++|++.++++.|++||++|++||+++|.+
T Consensus 535 ~k~~DvlDvWFdSg~~~~~~~~~~------~~~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~ 608 (974)
T PLN02843 535 EKGTDTMDVWFDSGSSWAGVLGSR------EGLSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEK 608 (974)
T ss_pred EecccccccchhcCCChHHHhccc------cccCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCC
Confidence 899999999999999776655431 23479999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCccChhhHHH---------hhChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003160 466 GRKMSKTLGNVIDPIDTIK---------EFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQN 536 (843)
Q Consensus 466 G~KMSKS~GNvI~p~dii~---------~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~ 536 (843)
|+|||||+||||+|.++++ +||+|+||||+++..+++|++|+.+.+...++++++|||++||+++|+.++.
T Consensus 609 G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~ 688 (974)
T PLN02843 609 GFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWK 688 (974)
T ss_pred CCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCC
Confidence 9999999999999999999 7999999999998777889999999999999999999999999999987654
Q ss_pred chhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC
Q 003160 537 DISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE 616 (843)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~ 616 (843)
+ .. ......++..|+|++++++.+++++.++|++|+|++|++.+++|++.++||+||+.+|||++++.
T Consensus 689 ~-~~-----------~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~ 756 (974)
T PLN02843 689 P-DN-----------AVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGG 756 (974)
T ss_pred c-cc-----------ccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccC
Confidence 2 00 00113456789999999999999999999999999999999999999999999999999999763
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC-----CCceEecCCCCCCC-cCC--HHHHHH----HHH
Q 003160 617 -YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR-----KEALIVSPWPQTSL-PRH--MSAIKR----FEN 683 (843)
Q Consensus 617 -~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~-----~~si~~~~~P~~~~-~~d--~~~~~~----~~~ 683 (843)
+...+++++.+|+.+++.+++||+|||||+|||||++|+.. .+||+++.||+.+. +.+ +..... ++.
T Consensus 757 ~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 836 (974)
T PLN02843 757 TTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEV 836 (974)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHH
Confidence 33456788899999999999999999999999999999742 36999999999873 444 333343 344
Q ss_pred HHHHHHHHHhhhhhcCCCccceeeEEEe-cCHHHHHHHHH------HHHHHHHHcCCcccc
Q 003160 684 LQSLTRAIRNARAEYSVEPAKRISASIV-ANEEVIQYISK------EKEVLALLSRLDLLN 737 (843)
Q Consensus 684 ~~~vv~~ir~~r~~~~i~~~~~~~~~i~-~~~~~~~~~~~------~~~~i~~l~~~~~~~ 737 (843)
..++++++|++|++.+|+++.++.+.+. .+.+..+.++. ....|+.|..++.+.
T Consensus 837 r~~v~~~l~~~r~~~~i~~~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~l~~l~~vs~v~ 897 (974)
T PLN02843 837 RDEVNKVLESARNGKLIGASLEAKVYLHASDASLAARLAELCGASNGADELRRIFITSQVE 897 (974)
T ss_pred HHHHHHHHHHHHhcCCCCcccceeEEEEeCCHHHHHHHHhhccccchHHHHHHHhccCceE
Confidence 5558899999999999998888888775 34434444544 235566666665433
No 16
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-152 Score=1382.15 Aligned_cols=707 Identities=32% Similarity=0.587 Sum_probs=641.0
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||+|||.+|++.+ |+++.++++++|++.|++|++++++.|++||++||+|+||+|+|
T Consensus 67 ~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~---g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~ 143 (800)
T PRK13208 67 IARYQRMRGYNVFFPQGWDDNGLPTERKVEKYY---GIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEY 143 (800)
T ss_pred HHHHHHcCCCcccCCCCcCCCcchHHHHHHHHh---CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCc
Confidence 589999999999999999999999999887644 89999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
+||||.|.++|+|+|.+||++|||||+.++|+|||.|+|+|||+||+|++..+.++||+|++.+ +.+|+|||||||||+
T Consensus 144 ~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~~~~~~~~ikf~~~~-~~~l~v~TtrPeTl~ 222 (800)
T PRK13208 144 QTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEVEYREREGKLNYIKFPVED-GEEIEIATTRPELLP 222 (800)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccchhhhccccccceEEEEEEEecC-CCEEEEEeCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999985 469999999999999
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
||+||||||++++|++|+|+++.||+. ++++|||+++||++++|||+||+||+||++||++|++||||+++++|++|++
T Consensus 223 g~~ai~v~p~~~~~~~l~g~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~ 301 (800)
T PRK13208 223 ACVAVVVHPDDERYKHLVGKTAIVPLF-GVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRM 301 (800)
T ss_pred hCeEEEECCCchHHHHhcCCEEEcCCC-CCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceE
Confidence 999999999999999999999999995 8999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
++++|.|+|++++|||++|++.|+++|++.+.+++.|++|+|||||+||++++++||||++++++++++++++ +++|+
T Consensus 302 ~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~ 379 (800)
T PRK13208 302 TEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGK--EINWY 379 (800)
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhc--CcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 48999
Q ss_pred cchhHHHHHHHhhCCC-ceeeeeecccCCCCceEEEcCCcccEEEecChhHH----HHHHh-----hhcCCCceeEecCC
Q 003160 321 PERFEKIYNHWLSNIK-DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----LEKAH-----QKYGKNVEIYQDPD 390 (843)
Q Consensus 321 P~~~~~~~~~~l~~l~-DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~d 390 (843)
|++.++++.+||++++ ||||||||+||||||+|+|++ ++...+.. .+.. ..... ..+| ...++|++|
T Consensus 380 P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~-~g~~~~~~-~~~l~~~~~~d~~~~~~~~~~g-~~~~~~~~d 456 (800)
T PRK13208 380 PEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKD-CGHPILPD-EEDLPVDPTKDEPPGYKCPQCG-SPGFEGETD 456 (800)
T ss_pred CHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCC-CCCeecCc-hhhhccCchhhccccccccccC-CcCEEecCC
Confidence 9999999999999988 999999999999999999965 44443321 1111 10111 1122 135899999
Q ss_pred CceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCccc
Q 003160 391 VLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMS 470 (843)
Q Consensus 391 vlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMS 470 (843)
||||||||++||++++|||.+. ++|++|||+|++++|+||++||+++|++++..+.+..||++|++||+|+|.+|+|||
T Consensus 457 vlD~WfdS~~~~~~~~~~~~~~-~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMS 535 (800)
T PRK13208 457 VMDTWATSSITPLIVTGWERDE-DLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMS 535 (800)
T ss_pred EEEEEEeCCchHHHHhCCCCCh-hhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCC
Confidence 9999999999999999999875 789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccChhhHHHhhChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccc
Q 003160 471 KTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFD 550 (843)
Q Consensus 471 KS~GNvI~p~dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~ 550 (843)
||+||+|+|.+++++||+|++||||+++.+++|++|+++.+..++++++++||+++|+.. +.+...
T Consensus 536 KS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~------------- 601 (800)
T PRK13208 536 KSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPE------------- 601 (800)
T ss_pred CCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-cccccc-------------
Confidence 999999999999999999999999994444999999999999999999999999999873 221100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHH
Q 003160 551 EEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLY 630 (843)
Q Consensus 551 ~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~ 630 (843)
......+...|+|++++++.+++++.++|++|+|+.|++.+++|+++++||+||+.+|||++.+...+.+..++.+++.
T Consensus 602 -~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~ 680 (800)
T PRK13208 602 -PDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYT 680 (800)
T ss_pred -cCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHH
Confidence 0001234668999999999999999999999999999999999998889999999999999875333336678899999
Q ss_pred HHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEE
Q 003160 631 IFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISAS 709 (843)
Q Consensus 631 ~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~ 709 (843)
+++.+++||||||||+|||||+.|+ .+||+.++||+.+. ..+++++..++.+++++..+|++|++++++++.++.+.
T Consensus 681 ~l~~l~~LLaPf~P~iaEelw~~L~--~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~~~i~~~~~l~~~ 758 (800)
T PRK13208 681 VLDTLLRLLAPFLPFITEEVWSWLY--GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLNAPLKKV 758 (800)
T ss_pred HHHHHHHHhcccchhhHHHHHHhCC--CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccceE
Confidence 9999999999999999999999998 35999999999873 56788999999999999999999999999999999876
Q ss_pred Ee-cCHHHHHHHHHHHHHHHHHcCCccc
Q 003160 710 IV-ANEEVIQYISKEKEVLALLSRLDLL 736 (843)
Q Consensus 710 i~-~~~~~~~~~~~~~~~i~~l~~~~~~ 736 (843)
++ .+.+ .+.++...+.|+.+.+++..
T Consensus 759 ~~~~~~~-~~~~~~~~~~l~~~~~~~~v 785 (800)
T PRK13208 759 EVYGPAD-LELLEAAEEDLKAAGNIEEL 785 (800)
T ss_pred EEecchH-HHHHHHHHHHHHHHhCcCeE
Confidence 55 4444 66777777888888877643
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.6e-149 Score=1365.91 Aligned_cols=695 Identities=31% Similarity=0.537 Sum_probs=619.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcC-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||.+|||.+...| .....+++++|+++|++|+.++++.+++||++||+|+||+|+
T Consensus 65 ~~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~ 144 (861)
T TIGR00392 65 ILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENP 144 (861)
T ss_pred HHHHHHcCCCccCCCCCcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCC
Confidence 5899999999999999999999999999998763322 223346789999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc----cCCeEEEEEEEecCCCe--------
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE----EPGTLYYIKYRVAGRSD-------- 147 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~----~~~~~~~~~~~~~~~~~-------- 147 (843)
|+||||.|+++|+|+|.+||++||||||.++|+|||.|+|+|||+||+|++ ..++++||+|++.+++.
T Consensus 145 y~T~~p~y~~~~~~~f~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~ 224 (861)
T TIGR00392 145 YKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLS 224 (861)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999887 78999999999976554
Q ss_pred EEEEEeCCccccccCcEEEEcCCCc-----------hh--------------------------hhhcccEEEcCCCCCC
Q 003160 148 FLTIATTRPETLFGDVALAVNPQDE-----------HY--------------------------SQFIGMMAIVPMTYGR 190 (843)
Q Consensus 148 ~l~v~TtrPeTl~g~~ai~v~P~~~-----------~y--------------------------~~l~g~~~~~P~~~~~ 190 (843)
+++|||||||||+||+||||||+++ +| ++|+|++|.||++ ++
T Consensus 225 ~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~-~~ 303 (861)
T TIGR00392 225 SLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLEGLEYEHPLY-DF 303 (861)
T ss_pred eEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhCCCEEECCCC-cc
Confidence 8999999999999999999999975 33 5689999999995 78
Q ss_pred ee------eE-EeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCC-------CCCCCcHHHHH
Q 003160 191 HV------PI-ISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-------LFRGLDRFEAR 256 (843)
Q Consensus 191 ~i------pi-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g-------~~~G~~~~~ar 256 (843)
.+ || ++++||++++|||+||+|||||++||++|++||||+++++|++|.+++..+ .|.|++++|||
T Consensus 304 ~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~ 383 (861)
T TIGR00392 304 VSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKAN 383 (861)
T ss_pred ccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhH
Confidence 88 85 677999999999999999999999999999999999999999999876544 58999999999
Q ss_pred HHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCC
Q 003160 257 KKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIK 336 (843)
Q Consensus 257 ~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~ 336 (843)
++|++.|+++|++++.+++.|+||||||||+||++++++||||++++++++++++++ +++|+|+..++++.+||++++
T Consensus 384 ~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~ 461 (861)
T TIGR00392 384 KIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRP 461 (861)
T ss_pred HHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999995 599999999999999999999
Q ss_pred ceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHh--------------------hhcCCCceeEecCCCceEEE
Q 003160 337 DWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH--------------------QKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 337 DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~dvlD~WF 396 (843)
||||||||+||||||+|+|++ ++..++..+.++...... ..+++...+.|++|||||||
T Consensus 462 DW~ISRqr~WG~pIP~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~dvlDvWf 540 (861)
T TIGR00392 462 DWCISRQRYWGIPIPIWYCED-TGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRRVPDVLDVWF 540 (861)
T ss_pred cceeeccccCCCeeeEEEECC-CCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEEccccccchh
Confidence 999999999999999999975 444566666665543111 01222246899999999999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 476 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNv 476 (843)
|||++|++..+||.++ .+|++|||+|++++|+||++||+++|++.++.+.+..||++|++||||+|.+|+|||||+||+
T Consensus 541 dS~~~~~~~~~~~~~~-~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNv 619 (861)
T TIGR00392 541 DSGSMPYASIHYPFEN-EKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNV 619 (861)
T ss_pred hcCcchHHhcCCCCCc-chhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCC
Confidence 9999999999999765 679999999999999999999999999999988899999999999999999999999999999
Q ss_pred cChhhHHHhhChhHHHHHHHhCCcccccccCHHHHHHHH-HHHHHHHHHHHHHH--hcCCCCCchhHHHHHHhhccchhh
Q 003160 477 IDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANK-AFTNKLWNAGKFIL--QNLPSQNDISRWEILLAYKFDEEE 553 (843)
Q Consensus 477 I~p~dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~-~~~nkl~N~~rf~~--~~~~~~~~~~~~~~~~~~~~~~~~ 553 (843)
|+|.+++++||+|++||||++.++++|++|+++.+.... ++.|++||+++|+. +++.++.+... ..
T Consensus 620 I~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~-----------~~ 688 (861)
T TIGR00392 620 VDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFN-----------SV 688 (861)
T ss_pred CCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccc-----------cc
Confidence 999999999999999999999933999999999998854 59999999999997 66654432000 00
Q ss_pred hhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHH
Q 003160 554 CLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFE 633 (843)
Q Consensus 554 ~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~ 633 (843)
....++..|+|++++++.+++++.++|++|+|+.|++.+++|+++++||+|++.+|+++|.....+.+++++.+++.+++
T Consensus 689 ~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~ 768 (861)
T TIGR00392 689 AVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALL 768 (861)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHH
Confidence 11234668999999999999999999999999999999999998889999999999988876433444478889999999
Q ss_pred HHHHHhCCCchhhHHHHHHHhccC--CCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEE
Q 003160 634 NILKLLHPFMPFVTEELWQSLRKR--KEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASI 710 (843)
Q Consensus 634 ~~l~LL~P~~P~iaEeiw~~L~~~--~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i 710 (843)
.+++||+|||||+||+||+.|+.. .+||+.++||+.+. +.|++++..++.++++++.+|++|++.+++.++++...+
T Consensus 769 ~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~~~~~ 848 (861)
T TIGR00392 769 TLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPLKELV 848 (861)
T ss_pred HHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHhhcCE
Confidence 999999999999999999999764 46999999999874 678889999999999999999999999998877776543
Q ss_pred e
Q 003160 711 V 711 (843)
Q Consensus 711 ~ 711 (843)
+
T Consensus 849 i 849 (861)
T TIGR00392 849 I 849 (861)
T ss_pred E
Confidence 3
No 18
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.2e-134 Score=1222.44 Aligned_cols=653 Identities=27% Similarity=0.445 Sum_probs=563.0
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHH----------H-cCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLA----------A-EGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKR 69 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~----------~-~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~ 69 (843)
++||+||+||+|+|++||||||+|||..+++... + .|+++.++ ++| ..|++|++++.+.+++||++
T Consensus 15 i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i--~~f-~~~~~~~~~~~~~~~~~~~~ 91 (897)
T PRK12300 15 IARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEEL--EKF-KDPEYIVEYFSEEAKEDMKR 91 (897)
T ss_pred HHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHH--HHh-cCHHHHHHHhHHHHHHHHHH
Confidence 5899999999999999999999999999876321 1 25544443 245 34799999999999999999
Q ss_pred hcccccCcCccccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCC--eEEEEEEEecCCCe
Q 003160 70 LGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPG--TLYYIKYRVAGRSD 147 (843)
Q Consensus 70 lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~--~~~~~~~~~~~~~~ 147 (843)
||+|+||+|+|+||||.|+++|+|+|.+||++||||||.++|+|||.|+|+|||+|+++++..+ ..+||+|+ .+++.
T Consensus 92 lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~~~~~~~~ikf~-~~~~~ 170 (897)
T PRK12300 92 IGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEPEIVEYTLIKFE-ESEDL 170 (897)
T ss_pred hCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCCCcceEEEEEEe-CCCce
Confidence 9999999999999999999999999999999999999999999999999999999999877664 45789998 55668
Q ss_pred EEEEEeCCccccccCcEEEEcCCCc---------------------hhh-------------hhcccEEEcCCCCCCeee
Q 003160 148 FLTIATTRPETLFGDVALAVNPQDE---------------------HYS-------------QFIGMMAIVPMTYGRHVP 193 (843)
Q Consensus 148 ~l~v~TtrPeTl~g~~ai~v~P~~~---------------------~y~-------------~l~g~~~~~P~~~~~~ip 193 (843)
+++|||||||||+||+||||||+++ +|+ +|+|++|.|||+ ++.+|
T Consensus 171 ~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~-~~~ip 249 (897)
T PRK12300 171 ILPAATLRPETIFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVT-GKEVP 249 (897)
T ss_pred EEEEEECCcchhccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEEECCCC-CCeEE
Confidence 9999999999999999999999997 354 699999999995 89999
Q ss_pred EEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhC--------CCceeec-----------------------c-------
Q 003160 194 IISDKYVDKEFGTGVLKISPGHDHNDYLLARKLG--------LPILNVM-----------------------N------- 235 (843)
Q Consensus 194 ii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~--------l~~~~~i-----------------------~------- 235 (843)
|++++||++++|||+||+|||||++||+++++++ |+++.++ |
T Consensus 250 il~~~~V~~~~GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~ 329 (897)
T PRK12300 250 ILPADFVDPDNGTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEAT 329 (897)
T ss_pred EeccCeeecCCCeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHH
Confidence 9999999999999999999999999999999998 6654443 3
Q ss_pred --------CCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEee-ccceeEecc--hH
Q 003160 236 --------KDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLV-SKQWFVTME--PL 304 (843)
Q Consensus 236 --------~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~-~~QWFl~~~--~~ 304 (843)
.+|+|++.+|+|+|++++|||++|++.|+++|++++.+.+.| +|+|||||+||++++ ++|||++++ ++
T Consensus 330 ~~~y~~~f~~G~~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~ 408 (897)
T PRK12300 330 KEVYRAEFHKGVLKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEW 408 (897)
T ss_pred HHhhhccccceEEeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHH
Confidence 489999889999999999999999999999999999988888 467779999999975 699999998 79
Q ss_pred HHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCce---EEEcCCccc--EEEecChhHHHHHHhhhc
Q 003160 305 AEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEEE--YIVARNADEALEKAHQKY 379 (843)
Q Consensus 305 ~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 379 (843)
+++++++++ +++|+|+..++++.+||+|++||||||||+||||||+ |.+++.++. |++..+..+.+.. +
T Consensus 409 k~~~~~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~----~ 482 (897)
T PRK12300 409 KELAHKALD--NMEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIRE----Y 482 (897)
T ss_pred HHHHHHHHc--cCEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHH----c
Confidence 999999995 5999999999999999999999999999999999996 777653332 3333333322221 1
Q ss_pred C-CCceeEecCCCceEEEecCccc---ccccCCCCCC----hhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCC
Q 003160 380 G-KNVEIYQDPDVLDTWFSSALWP---FSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 451 (843)
Q Consensus 380 ~-~~~~~~~~~dvlD~WFdS~l~~---~~~~g~p~~~----~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~P 451 (843)
| +...+ .++++|+||.++..+ ....|||... +++|++|||+|++++|+||++||..++++.+.++.+..|
T Consensus 483 g~~~~~l--~~~~~D~~~~~~~~~~~~~~~sg~p~~~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~ 560 (897)
T PRK12300 483 GIKPEQL--TPEFFDYVFLGKGDPEEVSKKTGIPKEILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEK 560 (897)
T ss_pred CCChHHC--ChhhCceEEeCCCccccCchhcCCCHHHHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCc
Confidence 1 00111 356778777654322 2234565542 468999999999999999999998888888888888777
Q ss_pred c-eEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 003160 452 F-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 529 (843)
Q Consensus 452 f-~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~ 529 (843)
| ++|++||||++ +|+|||||+||+|+|.+++++||||++||||+++++ ++|++|+++.+.+..++++++||+++++.
T Consensus 561 ~Pk~v~~hG~vl~-~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~ 639 (897)
T PRK12300 561 WPRGIVVNGFVLL-EGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELI 639 (897)
T ss_pred cCcEEEEcceEEE-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 89999999997 899999999999999999999999999999999777 99999999999999999999999998875
Q ss_pred hcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhh
Q 003160 530 QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASK 609 (843)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K 609 (843)
+.... ..++..|+|++++++.++++++++|++|+|+.|++.++.|+++ .+|||++.++
T Consensus 640 ~~~~~---------------------~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k 697 (897)
T PRK12300 640 EIGGE---------------------EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEAFYELLN-DLRWYLRRVG 697 (897)
T ss_pred cCCCc---------------------cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 43210 1235689999999999999999999999999999999877754 5799999876
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHH
Q 003160 610 ARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLT 688 (843)
Q Consensus 610 ~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv 688 (843)
+ .++.++++++..+++||+|||||+||+||+.|+.. +||+.+.||+++. +.|++++..++.+++++
T Consensus 698 ~------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~-~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i 764 (897)
T PRK12300 698 E------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGE-GFVSLEKWPEPDESKIDEEAELAEEYVKRLI 764 (897)
T ss_pred h------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC-CeEEeCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 5 35678999999999999999999999999999864 6999999999884 67999999999999999
Q ss_pred HHHHhhhhhcCCCcc
Q 003160 689 RAIRNARAEYSVEPA 703 (843)
Q Consensus 689 ~~ir~~r~~~~i~~~ 703 (843)
+.+|++|+..+++++
T Consensus 765 ~~ir~~~~~~~~~~~ 779 (897)
T PRK12300 765 EDIREILKVAKIKPK 779 (897)
T ss_pred HHHHHHHHHcCCCCc
Confidence 999999999999773
No 19
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-133 Score=1226.53 Aligned_cols=662 Identities=21% Similarity=0.349 Sum_probs=554.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHH---HHcCCCC----------------------cccCHHHHHHHHHHH
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML---AAEGIKR----------------------VELSRDEFTKRVWEW 55 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l---~~~g~~~----------------------~~~~~~~f~~~~~~~ 55 (843)
++||+||+||+|+|+|||||||+|||..|||.. .+.|..+ .++++++|+++|+++
T Consensus 74 i~Rykrm~G~~vlfp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~ 153 (1084)
T PLN02959 74 AAAYHRLRGANVLLPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKA 153 (1084)
T ss_pred HHHHHHcCCCccCCCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHH
Confidence 589999999999999999999999999998854 3456432 457788999999888
Q ss_pred HHH---------------------------------HHHHHHHHHHHhcccccCcCccccCc--hhHHHHHHHHHHHHHH
Q 003160 56 KEK---------------------------------YGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHE 100 (843)
Q Consensus 56 ~~~---------------------------------~~~~~~~q~~~lG~~~Dw~r~~~T~d--~~~~~~v~~~F~~L~~ 100 (843)
+.+ |.+.+++||++||+++||+|+|+||| |.|.++|+|+|.+|++
T Consensus 154 ~~k~~~~~~~~~~~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~e 233 (1084)
T PLN02959 154 VAKSGTQKYQWEIMRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKK 233 (1084)
T ss_pred HHHhCCchHHHHHHhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHH
Confidence 755 33778999999999999999999999 9999999999999999
Q ss_pred cCceeeCCcccccCCCCCcccCcccccccccCCeEEE--EEEEec-----------CCCeEEEEEeCCccccccCcEEEE
Q 003160 101 KGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAV 167 (843)
Q Consensus 101 ~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~--~~~~~~-----------~~~~~l~v~TtrPeTl~g~~ai~v 167 (843)
+|+||||.+||+|||+|+|+|||||++|++..++..| |+|++. +++.+++||||||||||||+||||
T Consensus 234 kG~I~~g~rpv~wcp~~~t~ladhe~~~~e~~~~~~y~~ikf~v~~~~~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~V 313 (1084)
T PLN02959 234 KGKIVKDKRYTIYSPLDGQPCADHDRASGEGVGPQEYVLIKMEVLPPFPGKLKALEGKKVFLAAATLRPETMYGQTNCWV 313 (1084)
T ss_pred CCCEEecCeeeeeCCCCCCCchhhHHhcCCCCCcceeEEEEEeecCcchhhhhhcCCCCeEEEEEeCccchhhhheeEEE
Confidence 9999999999999999999999999999997777666 678863 345799999999999999999999
Q ss_pred cCCCc----------------h------h------------------hhhcccEEEcCCCCCCe-eeEEeCCCCCccCCC
Q 003160 168 NPQDE----------------H------Y------------------SQFIGMMAIVPMTYGRH-VPIISDKYVDKEFGT 206 (843)
Q Consensus 168 ~P~~~----------------~------y------------------~~l~g~~~~~P~~~~~~-ipii~~~~V~~~~GT 206 (843)
||+++ + | ++|+|+.|.+|++ +++ +||+++.||++++||
T Consensus 314 nP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~-~~~~i~ilp~~~V~~~~GT 392 (1084)
T PLN02959 314 LPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLA-FNEVIYALPMLTILTDKGT 392 (1084)
T ss_pred CCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCC-CCcceeEeceEEEeCCCCe
Confidence 99976 2 4 5799999999995 666 999999999999999
Q ss_pred CeEEecCCCCHHhHHH----------HHHhCC--------CceeeccCCCc-----------------------------
Q 003160 207 GVLKISPGHDHNDYLL----------ARKLGL--------PILNVMNKDGT----------------------------- 239 (843)
Q Consensus 207 G~V~~~Pah~~~D~~~----------~~~~~l--------~~~~~i~~~G~----------------------------- 239 (843)
|+||+|||||++||.+ +++||| +++++||.+|.
T Consensus 393 GvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~ 472 (1084)
T PLN02959 393 GVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRL 472 (1084)
T ss_pred eeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhh
Confidence 9999999999999998 577887 55788887653
Q ss_pred -----cccc---CCCCCCCcHHHHHHHHHHHHHHcCCcee-eccccccCCccCCCCCeeEEeeccceeEecc--hHHHHH
Q 003160 240 -----LNEV---AGLFRGLDRFEARKKLWSDLEETGLAVK-KEPHTLRVPRSQRGGEVIEPLVSKQWFVTME--PLAEKA 308 (843)
Q Consensus 240 -----~~~~---~g~~~G~~~~~ar~~i~~~L~~~g~l~~-~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~--~~~~~~ 308 (843)
|.+. +|+|+|++|+|||++|+++|+++|+++. .+++ .|+|+|||++|++++++|||++++ ++++++
T Consensus 473 ~Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep~---~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a 549 (1084)
T PLN02959 473 TYLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEPE---KKVMSRSGDECVVALTDQWYLTYGEEEWKKKA 549 (1084)
T ss_pred hhhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEcC---CCeEECCCCEEEEeecCCeeEECCchHHHHHH
Confidence 2222 6899999999999999999999998874 5543 589999999999999999999998 699999
Q ss_pred HHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCce---EEEcCCcc--cEEEecChhHHHHHHhhhcCC--
Q 003160 309 LHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKYGK-- 381 (843)
Q Consensus 309 ~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-- 381 (843)
+++++ +++|+|+.++++|.+||+|++|||||||||||||||+ |+++++++ -|++..+..+.+.... .+|.
T Consensus 550 ~~~l~--~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~~~~~~~-~~g~~~ 626 (1084)
T PLN02959 550 EKCLS--KMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAHLLQGGD-MYGKDK 626 (1084)
T ss_pred HHHHc--ccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHHHHhhhh-ccCCcc
Confidence 99995 5999999999999999999999999999999999993 33444333 3555566655544321 1121
Q ss_pred -CceeEe-cCCCceEEEecCcccccccCCCCCC----hhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCc-eE
Q 003160 382 -NVEIYQ-DPDVLDTWFSSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPF-SH 454 (843)
Q Consensus 382 -~~~~~~-~~dvlD~WFdS~l~~~~~~g~p~~~----~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf-~~ 454 (843)
.....+ ++|||||||+||+||+++ |||... +++|++|||+|++++|+||+++|+.++++.+.+++++.|| +.
T Consensus 627 ~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~ 705 (1084)
T PLN02959 627 SSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRG 705 (1084)
T ss_pred ccCChhhcCccceeEeecCCCccccc-CCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCce
Confidence 122223 689999999999999988 998753 4789999999999999999999999999999999999999 57
Q ss_pred EEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003160 455 VYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLP 533 (843)
Q Consensus 455 v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~ 533 (843)
|++||||+ .+|+|||||+||+|+|.++|++||||++||||+++++ .+|++|+++...+ +..+++|.++|+..++.
T Consensus 706 v~v~G~V~-~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~---~~~~l~n~~~~~~~~~~ 781 (1084)
T PLN02959 706 FRCNGHLM-LNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANA---AILRLTKEIAWMEEVLA 781 (1084)
T ss_pred EEEccEEe-cCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHH---HHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999999999999999877 8999999887764 34456666666554432
Q ss_pred CCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHH-HHhhhh--
Q 003160 534 SQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWY-IEASKA-- 610 (843)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Y-le~~K~-- 610 (843)
.... +. ....++..|+||+++++.++++++++|++|+|+.|++.. || |+..++
T Consensus 782 ~~~~-----------~~---~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~y 837 (1084)
T PLN02959 782 AESS-----------LR---TGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEY 837 (1084)
T ss_pred hhcc-----------cC---CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHH
Confidence 1000 00 011246789999999999999999999999999999963 33 444554
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHH
Q 003160 611 RLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRA 690 (843)
Q Consensus 611 ~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ 690 (843)
+++++.. ..++.+|+++|+.+++||||||||+|||||+.|.+..+||+.++||+++ ..|++++..++.++++++.
T Consensus 838 r~~~~~~----~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~-~~d~~~e~~~~~l~~~i~~ 912 (1084)
T PLN02959 838 RLSCGSG----GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAG-EPDLTLKRANKYLQDSIVS 912 (1084)
T ss_pred hhccccc----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCC-ccCHHHHHHHHHHHHHHHH
Confidence 5554311 2457799999999999999999999999999995445699999999987 4578889999999999999
Q ss_pred HHhhhhhcCCCcc
Q 003160 691 IRNARAEYSVEPA 703 (843)
Q Consensus 691 ir~~r~~~~i~~~ 703 (843)
+|++++.+...++
T Consensus 913 iR~~~~~~~~~~~ 925 (1084)
T PLN02959 913 FRKLLQKQLAGSK 925 (1084)
T ss_pred HHHhHHHhchhhh
Confidence 9999987665543
No 20
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.3e-131 Score=1203.32 Aligned_cols=666 Identities=24% Similarity=0.369 Sum_probs=567.7
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcC------CCCcccCHHHHHHHH--HHHHHHHHHHHHHHHHHhcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG------IKRVELSRDEFTKRV--WEWKEKYGGTITSQIKRLGA 72 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g------~~~~~~~~~~f~~~~--~~~~~~~~~~~~~q~~~lG~ 72 (843)
++||+||+||+|+|++||||||+||+..+++...+.+ .+.+++++++|.+.| ++|++++.+.+++||++||+
T Consensus 54 ~aRy~Rm~G~~vl~p~G~d~~G~pi~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~ 133 (938)
T TIGR00395 54 SARFERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGY 133 (938)
T ss_pred HHHHHHhcCCccCCCCccCCCCCchHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCc
Confidence 5899999999999999999999999999988653322 245689999999998 99999999999999999999
Q ss_pred cccCcCccccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC--CeEEEEEEEecCCCeEEE
Q 003160 73 SCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRSDFLT 150 (843)
Q Consensus 73 ~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~--~~~~~~~~~~~~~~~~l~ 150 (843)
|+||+|+|+||||.|.++|+|+|.+|+++||||+|.++|+|||+|+|+|||||+++++.. +.+++|+|++.+.+.+|+
T Consensus 134 s~DW~r~~~T~dp~y~~~v~~~f~~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~~~~l~ 213 (938)
T TIGR00395 134 SIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDGAFYFV 213 (938)
T ss_pred eEECCCCccCCChhHHHHHHHHHHHHHHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCCceEEE
Confidence 999999999999999999999999999999999999999999999999999999987754 578999999987778999
Q ss_pred EEeCCccccccCcEEEEcCCCc---------------------hh-------------hhhcccEEEcCCCCCCeeeEEe
Q 003160 151 IATTRPETLFGDVALAVNPQDE---------------------HY-------------SQFIGMMAIVPMTYGRHVPIIS 196 (843)
Q Consensus 151 v~TtrPeTl~g~~ai~v~P~~~---------------------~y-------------~~l~g~~~~~P~~~~~~ipii~ 196 (843)
|||||||||+|+|||||||+++ +| ++|+|++|.||+ .++.+|||+
T Consensus 214 ~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~~~g~~l~G~~~~~P~-~~~~ipil~ 292 (938)
T TIGR00395 214 AATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLKYKPIEEVPGKQFIGKKVHNPV-VGPEVPILP 292 (938)
T ss_pred EeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccceeEEEEEchHhccCCEEECCC-CCCeeEEee
Confidence 9999999999999999999986 23 689999999998 489999999
Q ss_pred CCCCCccCCCCeEEecCCCCHHhHHHHHHh--------------CCCceeeccC--------------------------
Q 003160 197 DKYVDKEFGTGVLKISPGHDHNDYLLARKL--------------GLPILNVMNK-------------------------- 236 (843)
Q Consensus 197 ~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~--------------~l~~~~~i~~-------------------------- 236 (843)
++||++++|||+||+|||||++||++++++ +++++++++.
T Consensus 293 ~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l 372 (938)
T TIGR00395 293 AEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLL 372 (938)
T ss_pred cceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHH
Confidence 999999999999999999999999998874 3455555432
Q ss_pred -------------CCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEe-eccceeEecc
Q 003160 237 -------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPL-VSKQWFVTME 302 (843)
Q Consensus 237 -------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~-~~~QWFl~~~ 302 (843)
+|+|++++|+|+|++++|||++|++.|+++|++++.+.+.+ .|+|+|||++|+++ +++||||+++
T Consensus 373 ~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~ 451 (938)
T TIGR00395 373 EEATKILYKEEYHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYS 451 (938)
T ss_pred HHHHHHHhhhhccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcC
Confidence 46677778899999999999999999999999998877644 47788999999997 9999999999
Q ss_pred --hHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCce---EEEcCCcc--cEEEecChhHHHHHH
Q 003160 303 --PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKA 375 (843)
Q Consensus 303 --~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~--~~~~~~~~~~~~~~~ 375 (843)
+++++++++++ +++|+|+..++.+.+||+|++||||||||+||||||+ |++++.++ -|+...+..+.+...
T Consensus 452 ~~~~k~~~~~~l~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~~~i~~~l~~~ 529 (938)
T TIGR00395 452 DESWKELAHECLE--GMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAYYTIAHYLNKD 529 (938)
T ss_pred cHHHHHHHHHHHh--cCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhhccHHHHhhcc
Confidence 59999999997 4899999999999999999999999999999999996 66654332 233333333332211
Q ss_pred hhhcCCCceeEecCCCceEEEecCcccccccCCCCCC----hhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCC
Q 003160 376 HQKYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVP 451 (843)
Q Consensus 376 ~~~~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~----~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~P 451 (843)
.++ ...+ .++++|+||.++..+ ...|+|... +++|++|||+|+|++|+||++||..++++.+.++.+..|
T Consensus 530 --~~~-~~~l--~~ev~D~~~~~~~~~-~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~ 603 (938)
T TIGR00395 530 --YYG-NEQM--TDEFFDYIFLGKGDV-KNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIFPEKF 603 (938)
T ss_pred --CCC-hHHC--CcccCceEEECCCCh-hhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcCCccc
Confidence 011 1112 478999999875444 345776531 368999999999999999999999888888877766544
Q ss_pred c-eEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 003160 452 F-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFIL 529 (843)
Q Consensus 452 f-~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~ 529 (843)
| +.+++||||++ +|+|||||+||+|+|.+++++||||++||||+++++ ++|++|+++.+.+.+++++++||+++++.
T Consensus 604 ~Pk~i~~~G~vl~-~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~ 682 (938)
T TIGR00395 604 WPRGIVVNGYVML-EGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEIT 682 (938)
T ss_pred cCcEEEEeceEEe-CCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999995 999999999999999999999999999999999877 99999999999999999999999998876
Q ss_pred hcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHHHhhhHHHHHhh
Q 003160 530 QNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVG-RETYDFFWSDFADWYIEAS 608 (843)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~-~~i~~f~~~~~~~~Yle~~ 608 (843)
....... ....+..|+|++++++.++++++++|++|+|+.|+ ..+++|++ .||||++..
T Consensus 683 ~~~~~~~------------------~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~--~~n~Yl~~~ 742 (938)
T TIGR00395 683 KESNLET------------------GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQA--DVDWYRRRG 742 (938)
T ss_pred hhcccCC------------------CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 5321100 01235689999999999999999999999999999 67899984 489998754
Q ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHH
Q 003160 609 KARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSL 687 (843)
Q Consensus 609 K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~v 687 (843)
+++ ...+++.+++.+++||||||||+||+||+.|+. ++||+.++||+++. ++|++++..++.++++
T Consensus 743 ~~~------------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~-~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~ 809 (938)
T TIGR00395 743 GVN------------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN-EGFVSLAKFPEASEPAVDKEVEAAEEYLRNL 809 (938)
T ss_pred cch------------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC-CCeEEecCCCCCCcccCCHHHHHHHHHHHHH
Confidence 321 234788999999999999999999999999975 46999999999884 6789999999999999
Q ss_pred HHHHHhhhhhcCCCccceeeEEEecC
Q 003160 688 TRAIRNARAEYSVEPAKRISASIVAN 713 (843)
Q Consensus 688 v~~ir~~r~~~~i~~~~~~~~~i~~~ 713 (843)
++++|+. .+++++++.++.|..+
T Consensus 810 i~~iR~~---~~~~~~~p~~~~i~~~ 832 (938)
T TIGR00395 810 VRDIQEI---AKIDASKPKRVYLYTS 832 (938)
T ss_pred HHHHHHh---hccCCCCCcEEEEEEC
Confidence 9888874 5677777777766533
No 21
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-130 Score=1072.22 Aligned_cols=650 Identities=24% Similarity=0.393 Sum_probs=572.7
Q ss_pred CccccccCCCcccCCCCcCcccccch-HHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQ-LVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e-~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
+.||+.++|++|+|+|||||||||+| +++.+.+. ...+.++.-+.+++++.++.+-++++++.|++||+..||.++
T Consensus 84 inr~~laqg~~alyvpGwDchGLPiEs~kalssl~---~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~ 160 (937)
T KOG0433|consen 84 INRILLAQGKSALYVPGWDCHGLPIESTKALSSLT---ESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENP 160 (937)
T ss_pred HHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhh---hccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCc
Confidence 36999999999999999999999998 46555442 222556667889999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccccccc-CCeEEEEEEEecCC------------C
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE-PGTLYYIKYRVAGR------------S 146 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~-~~~~~~~~~~~~~~------------~ 146 (843)
|.||||.|..+..++|.+||++|||||+.+||+|+|+++||||+.|+||.+. .++++||+|+|.+. +
T Consensus 161 Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~~~~~~~~~~~ 240 (937)
T KOG0433|consen 161 YVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSSAHSEDSKIPQ 240 (937)
T ss_pred eeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccccccCCCccCc
Confidence 9999999999999999999999999999999999999999999999999875 68999999998642 2
Q ss_pred eEEEEEeCCccccccCcEEEEcCCCch-------------h--------------------------hhhcccEEEcCCC
Q 003160 147 DFLTIATTRPETLFGDVALAVNPQDEH-------------Y--------------------------SQFIGMMAIVPMT 187 (843)
Q Consensus 147 ~~l~v~TtrPeTl~g~~ai~v~P~~~~-------------y--------------------------~~l~g~~~~~P~~ 187 (843)
.|++||||+|||||+|.||+|||+..+ | ..|.|.+|.||+.
T Consensus 241 iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~~~~~k~~i~~t~~g~~L~~~~Y~~pl~ 320 (937)
T KOG0433|consen 241 IYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEKSSDRKCKIVGTVKGANLIGRRYKHPLH 320 (937)
T ss_pred EEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhhhcCcceeeeeecchhhccCceecCcCc
Confidence 789999999999999999999999642 1 2578999999997
Q ss_pred CCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCC-CCCCCcHH-HHHHHHHHHHHH
Q 003160 188 YGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAG-LFRGLDRF-EARKKLWSDLEE 265 (843)
Q Consensus 188 ~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g-~~~G~~~~-~ar~~i~~~L~~ 265 (843)
.....|++.++||+++.|||+||++||||++||.+|..+|||+.+++|++|+++.++| .+.|+.|. |..+.|+..|.
T Consensus 321 ~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~- 399 (937)
T KOG0433|consen 321 NELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN- 399 (937)
T ss_pred cccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh-
Confidence 7888999999999999999999999999999999999999999999999999999888 78999997 55777788887
Q ss_pred cCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecc
Q 003160 266 TGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLW 345 (843)
Q Consensus 266 ~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~ 345 (843)
+.+++.++|.|+||++|||++|++.|.++|||+++++++..+.+++++ ++|+|.....++..++..+.+|||||||.
T Consensus 400 -~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~--Vk~~P~~~~~rl~~~~~~R~~WCISRQR~ 476 (937)
T KOG0433|consen 400 -HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDD--VKVAPGDSDLRLKQLVTTRPSWCISRQRV 476 (937)
T ss_pred -hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhh--ceeCCcchHHHHHHHHcCCCcceeeeccc
Confidence 789999999999999999999999999999999999999999999974 99999999999999999999999999999
Q ss_pred cCCCCceEEEcCC--------------------cccEEEecChhHHHHHHhh-hc-CCCceeEecCCCceEEEecCcccc
Q 003160 346 WGHRIPVWYIVGK--------------------EEEYIVARNADEALEKAHQ-KY-GKNVEIYQDPDVLDTWFSSALWPF 403 (843)
Q Consensus 346 WG~pIP~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~dvlD~WFdS~l~~~ 403 (843)
||+|||++|..+. +.+.+...++++.++.... .. .....+.+.+|+||+|||||..+-
T Consensus 477 WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs 556 (937)
T KOG0433|consen 477 WGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWS 556 (937)
T ss_pred cCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcce
Confidence 9999999998542 1123334444444322111 11 112356788999999999997543
Q ss_pred cccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHH
Q 003160 404 STLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTI 483 (843)
Q Consensus 404 ~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii 483 (843)
+.++- +.-.++|++.+|.||+++||+++++++.+..+++||+.|++|||++|++|.|||||+||||+|..++
T Consensus 557 ~v~~~--------~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~v~ 628 (937)
T KOG0433|consen 557 AVLDN--------EREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVT 628 (937)
T ss_pred eecCC--------CCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecCCccchhhcccCcCCHHHHh
Confidence 44432 1235789999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh------hChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcC
Q 003160 484 KE------FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCK 557 (843)
Q Consensus 484 ~~------yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (843)
+. ||||+||||++.+....|+..+.+.+....+-+.|++|++||+++|+.++.... ...+..+
T Consensus 629 ~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~-----------~~~p~~d 697 (937)
T KOG0433|consen 629 DGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQ-----------VKFPLKD 697 (937)
T ss_pred CCcccCCCccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCcc-----------ccccchh
Confidence 97 999999999997777999999999999999999999999999999998876521 1223456
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHHHHHHHHHH
Q 003160 558 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENIL 636 (843)
Q Consensus 558 ~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~l 636 (843)
+.-+|++++.+|+.+++++.+.|++|+|+++++.+..|+.++++++|++++|+|||++. +...+++++++|.+++..++
T Consensus 698 l~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~ 777 (937)
T KOG0433|consen 698 LRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLA 777 (937)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999999999999999999999999999999999999999999984 34489999999999999999
Q ss_pred HHhCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHH
Q 003160 637 KLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMS 676 (843)
Q Consensus 637 ~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~ 676 (843)
+.++||+||++||+||+|+...+-++...||.... +..+.
T Consensus 778 ~~iaPIlP~LaeEvwq~lP~~~~~~f~~k~~~l~s~~~~~~ 818 (937)
T KOG0433|consen 778 HIISPILPHLAEEVWQHLPGSHEKIFRLKWEDLHSGLLTPH 818 (937)
T ss_pred HHHccccHHHHHHHHHhCCCCCCcccccCccccchhhcCch
Confidence 99999999999999999996545589999999883 44443
No 22
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1e-131 Score=1161.05 Aligned_cols=503 Identities=42% Similarity=0.774 Sum_probs=444.7
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHH-HHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKML-AAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l-~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|+|||||||||||.+|||.+ .+.+.++.++|+++|++.|++|++++.+.|++||++||+++||+|+
T Consensus 52 i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~ 131 (601)
T PF00133_consen 52 IARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDRE 131 (601)
T ss_dssp HHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCE
T ss_pred HHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCc
Confidence 489999999999999999999999999999987 3445577899999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCe-EEEEEeCCccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSD-FLTIATTRPET 158 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~-~l~v~TtrPeT 158 (843)
|+||||.|+++|+|+|.+|+++||||||.+||+|||+|+|+|||+||+|++..+.++||+|++.+++. +|+||||||||
T Consensus 132 y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~~~~~~~~~l~i~TtrPeT 211 (601)
T PF00133_consen 132 YFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSCQTALSDHEVEYKEVKSPSIYVKFPLKDGEEVYLVIWTTRPET 211 (601)
T ss_dssp EETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGEEEEEEEEEEEEEEEEESSSSEEEEEEEES-GGG
T ss_pred eEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCcccccchhhhhcccccccCceEEEEEEecCccceEEEEEechhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999988775 99999999999
Q ss_pred cccCcEEEEcCC-----------------------------CchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeE
Q 003160 159 LFGDVALAVNPQ-----------------------------DEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVL 209 (843)
Q Consensus 159 l~g~~ai~v~P~-----------------------------~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V 209 (843)
|+||+||||||+ +.++++|+|++|.||| .++.+|||+++||++++|||+|
T Consensus 212 l~~~~ai~vnP~~~Y~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~-~~~~~~vi~~~~V~~~~GTGiV 290 (601)
T PF00133_consen 212 LPGNTAIAVNPDFDYVINGERYIVAKDLVEKLSKQEKTKLEDFRGKELVGLKYIHPL-TGREVPVIPDDFVDMDKGTGIV 290 (601)
T ss_dssp GGG-BEEEE-TTSEEEETTEEEEEEHHHHHHHHTTTSSSEEEEECHHHTTSEEE-TT-SSSSEEEEEETTS-SSSTTSEE
T ss_pred HhCCeeEEECCCccceeCCeeehHHHHHHHHHHhhhhhcccccCcceecCcEecccc-ccceeEEEcccccccccchhhh
Confidence 999999999999 6778999999999999 4899999999999999999999
Q ss_pred EecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCee
Q 003160 210 KISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 289 (843)
Q Consensus 210 ~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v 289 (843)
|+|||||++||++|++|+||+++++|++|.+++.+|+|.|++++|||++|++.|+++|++++.++++|++|+|||||++|
T Consensus 291 ~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~i 370 (601)
T PF00133_consen 291 HSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPI 370 (601)
T ss_dssp EE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBE
T ss_pred hhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChh
Q 003160 290 EPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD 369 (843)
Q Consensus 290 ~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~ 369 (843)
++++++|||+++++++++++++++ +++|+|+..++++.+||++++||||||||+||||||+|+|++ ++...+..+..
T Consensus 371 i~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~-~~~~~~~~~~~ 447 (601)
T PF00133_consen 371 IPRLTDQWFIKYDDWKKKALEALE--KIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCED-CGEVLVIESTI 447 (601)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH--TSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETT-SEEEECCGGHH
T ss_pred EecccceeEEecHHhHHHHHhhcc--cceEEcccchhhhhhhccccccchhhccCCCCccceeeeccc-Ccccccccccc
Confidence 999999999999999999999998 699999999999999999999999999999999999999975 44444433322
Q ss_pred HHHHHH--------------hhh-cCCCceeEecCCCceEEEecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhh
Q 003160 370 EALEKA--------------HQK-YGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF 434 (843)
Q Consensus 370 ~~~~~~--------------~~~-~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~ 434 (843)
+..... ... ...+..+.|++||||||||||+||++.++||.+.+++|++|||+|++++|+||+++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~~~~~~~~P~D~~~~G~D~~~~ 527 (601)
T PF00133_consen 448 ELIADRVEKEGIDAWLHKPAEDKLPCCGGELRRDTDVLDTWFDSGLWPFAVLGWPENDREEFEYWYPVDLYIEGKDQIRG 527 (601)
T ss_dssp HHHHHHSTHHHHSCTSSHHHHHHHTTTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSCHHHHHHSSBSEEEEEGGGTTT
T ss_pred cccccccccccccccccccccccccccccceEEeeeeccccccccCCcccccccccccchhccccCCcccccCCccchhh
Confidence 221110 000 12345789999999999999999999999998866899999999999999999999
Q ss_pred HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccC
Q 003160 435 WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLS 507 (843)
Q Consensus 435 W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~ 507 (843)
|+++|++.+.++.++.||++|++||+|+|.+|+|||||+||||+|.++|++||||++|||+++++. ++|++||
T Consensus 528 W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 528 WFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcccCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999996555 9999997
No 23
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-126 Score=1027.96 Aligned_cols=724 Identities=25% Similarity=0.431 Sum_probs=639.6
Q ss_pred ccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCC----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Q 003160 2 VRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT 77 (843)
Q Consensus 2 ~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~----~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~ 77 (843)
.||..|+||.|-..+||||||+|+|..+.|.| |++. -.+|.+++..+|+..+-.|...++....|||-|+||+
T Consensus 68 tRya~~~G~hVeRRFGWD~HGlPVE~eIDKkL---gI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ 144 (1070)
T KOG0434|consen 68 TRYATQTGHHVERRFGWDTHGLPVEYEIDKKL---GITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFD 144 (1070)
T ss_pred HHHhhccccceeeecccccCCCccceeechhc---CCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceecc
Confidence 59999999999999999999999998888766 6543 3688999999999999999999999999999999999
Q ss_pred CccccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccc--cccccCCeEEEEEEEecCC-CeEEEEEeC
Q 003160 78 RERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGR-SDFLTIATT 154 (843)
Q Consensus 78 r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~-~~~l~v~Tt 154 (843)
+-|.||+|.|.+.|||+|++||++|++|||-+.++||..|.|+||+.|- .|+++.++.+.|.|++.+. +..+++|||
T Consensus 145 ndYkTmyp~FMESvWwvFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPav~v~F~li~~~~~slvAWTT 224 (1070)
T KOG0434|consen 145 NDYKTLYPSFMESVWWVFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPAVFVAFPLIGDPNVSLVAWTT 224 (1070)
T ss_pred CCcceecHHHHHHHHHHHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCeEEEEeeccCCcceeEEEEec
Confidence 9999999999999999999999999999999999999999999999887 6999999999999998654 578999999
Q ss_pred CccccccCcEEEEcCCCch----------------------h----------------hhhcccEEEcCCCC------CC
Q 003160 155 RPETLFGDVALAVNPQDEH----------------------Y----------------SQFIGMMAIVPMTY------GR 190 (843)
Q Consensus 155 rPeTl~g~~ai~v~P~~~~----------------------y----------------~~l~g~~~~~P~~~------~~ 190 (843)
+|||||+|.|+||||+..+ | +.|.|++|..+|.+ ..
T Consensus 225 TPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~ 304 (1070)
T KOG0434|consen 225 TPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEG 304 (1070)
T ss_pred CCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCcccCccchHHHHHhccC
Confidence 9999999999999999531 1 35889999988842 45
Q ss_pred eeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCC-----CceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHH
Q 003160 191 HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGL-----PILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEE 265 (843)
Q Consensus 191 ~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l-----~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~ 265 (843)
...|++|+||+.+.|||+||++||.|.+||.+|...|+ -+.|++|++|.++.....|+|..++||.+.|++.|++
T Consensus 305 aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~ 384 (1070)
T KOG0434|consen 305 AFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKA 384 (1070)
T ss_pred ceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHh
Confidence 78999999999999999999999999999999999886 4678999999999999999999999999999999999
Q ss_pred cCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchh-HHHHHHHhhCCCceeeeeec
Q 003160 266 TGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQL 344 (843)
Q Consensus 266 ~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRq~ 344 (843)
.|.+++...+.|+||+||||++|+++++.|.||++++++.+++++... +..|+|+.. .++|.|||+|.+||.|||+|
T Consensus 385 ~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR 462 (1070)
T KOG0434|consen 385 SGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNR 462 (1070)
T ss_pred cCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhccccccc
Confidence 999999999999999999999999999999999999999999998754 578999986 67999999999999999999
Q ss_pred ccCCCCceEEEcCCcccEEEecChhHHHHHHhhh----------------cCCCceeEecCCCceEEEecCcccccccCC
Q 003160 345 WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQK----------------YGKNVEIYQDPDVLDTWFSSALWPFSTLGW 408 (843)
Q Consensus 345 ~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~ 408 (843)
+||+|||.|..++ .++.++.+|+.++.+-...+ .++...+.|..+|+|+||+||.+||+.-.|
T Consensus 463 ~WGTPIpLWVSdD-~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~Hy 541 (1070)
T KOG0434|consen 463 YWGTPIPLWVSDD-YEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHY 541 (1070)
T ss_pred ccCCCcceEEccC-CceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcC
Confidence 9999999999754 45678888887764321110 022346888999999999999999999999
Q ss_pred CCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhCh
Q 003160 409 PDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGA 488 (843)
Q Consensus 409 p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGa 488 (843)
|.++++.|+.-+|+|++-+|-||.|+||+.++.+|.+++|++||++|+++|+|+.++|+|||||+.|.-||..++++|||
T Consensus 542 PFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGA 621 (1070)
T KOG0434|consen 542 PFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGA 621 (1070)
T ss_pred CccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcCCCHHHHHHhhcc
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCc--ccccccCHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHH
Q 003160 489 DALRFTISLGTA--GQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWV 565 (843)
Q Consensus 489 DalR~~l~~~~~--~~D~~f~~~~~~~-~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 565 (843)
||||+||++++. .+.+.|.++++.. .++.+-.+||+++|+.+|......... ..+.........+.+|+||
T Consensus 622 DalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g------~~f~~~~~~~S~NvmDrWI 695 (1070)
T KOG0434|consen 622 DALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETG------KDFVFDDSVTSSNVMDRWI 695 (1070)
T ss_pred hheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccC------CccccccccccchhHHHHH
Confidence 999999999887 8999999999988 688899999999999887432111000 0011011112346799999
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchh
Q 003160 566 VSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPF 645 (843)
Q Consensus 566 l~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~ 645 (843)
++.++.++.-+++.|+.|++..++..+..|+ +++.|||+...+.++.+++...+...++++|..+|-+++++|+||+||
T Consensus 696 ~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF 774 (1070)
T KOG0434|consen 696 LASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF 774 (1070)
T ss_pred HHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 9999999999999999999999999999998 799999999999999887556678889999999999999999999999
Q ss_pred hHHHHHHHhcc---------CCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe--cC
Q 003160 646 VTEELWQSLRK---------RKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV--AN 713 (843)
Q Consensus 646 iaEeiw~~L~~---------~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~--~~ 713 (843)
+||.|||+|.. +++|||...+|.+.. ..|+.++..++.++.+|...|.+|...+|+-+.+++-.|+ ++
T Consensus 775 ~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~siIdl~R~iRern~islKtPLK~~ivi~~d 854 (1070)
T KOG0434|consen 775 FTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSIIDLARNIRERNTISLKTPLKELIVIHSD 854 (1070)
T ss_pred HHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHHHHHHHHHHHhhccCCcccCchhheEEEcCC
Confidence 99999999963 257899999998884 7888899999999999999999999999999999986555 66
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccceee
Q 003160 714 EEVIQYISKEKEVLALLSRLDLLNVHF 740 (843)
Q Consensus 714 ~~~~~~~~~~~~~i~~l~~~~~~~v~~ 740 (843)
++..+.++.....|. ..++..++.+
T Consensus 855 ~~~ledik~l~~yI~--eElNVr~v~~ 879 (1070)
T KOG0434|consen 855 EEYLEDIKSLERYIL--EELNVREVVF 879 (1070)
T ss_pred HHHHHHHHHHHHHHH--Hhhcceeeee
Confidence 777666666555554 3334344433
No 24
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.3e-119 Score=1080.25 Aligned_cols=613 Identities=27% Similarity=0.441 Sum_probs=496.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|||.+++ +.|+++. +|++++++.|++||++||+++||+|+|
T Consensus 61 i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~----~~g~~~~------------~~~~~~~~~~~~~~~~lGi~~Dw~~~~ 124 (805)
T PRK00390 61 IARYKRMQGYNVLHPMGWDAFGLPAENAAI----KTGTHPA------------EWTYENIANMKKQLKSLGFSYDWSREI 124 (805)
T ss_pred HHHHHHhcCCcccccCccCCCCCHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCe
Confidence 589999999999999999999999877654 4576653 699999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc--c---------------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E--------------------------- 131 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~--~--------------------------- 131 (843)
.|+||+|.++|||+|.+|+++||||++.++|+|||.|+|+||++||+... .
T Consensus 125 ~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~ 204 (805)
T PRK00390 125 ATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDD 204 (805)
T ss_pred ecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999997431 1
Q ss_pred --------------------CCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhhh---------------
Q 003160 132 --------------------PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ--------------- 176 (843)
Q Consensus 132 --------------------~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~--------------- 176 (843)
.+..++++|++.+++.+++|||||||||+||+||||||+++++..
T Consensus 205 l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~ 284 (805)
T PRK00390 205 LDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEEC 284 (805)
T ss_pred HHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHH
Confidence 135688999998767899999999999999999999999987643
Q ss_pred ------------------hcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCC-
Q 003160 177 ------------------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKD- 237 (843)
Q Consensus 177 ------------------l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~- 237 (843)
|+|++|.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++||.+
T Consensus 285 ~~~~~~~~~~~~~~~~g~l~g~~~~~P~~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g 363 (805)
T PRK00390 285 KKKSDLERQTETKEKTGVFTGLYAIHPLT-GEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGD 363 (805)
T ss_pred hhhcchhhhhcccceeeeecCcEEECCCC-CCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCC
Confidence 58999999995 8999999999999999999999999999999999999999999999754
Q ss_pred -------------CcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchH
Q 003160 238 -------------GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPL 304 (843)
Q Consensus 238 -------------G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~ 304 (843)
|++++ .|.|+|+++++||++|++.|+++|++. .+
T Consensus 364 ~~~~~~~~~~~~~g~~~~-~~~~~Gl~~~~a~~~Ii~~L~~~g~~~----------------~~---------------- 410 (805)
T PRK00390 364 GDEDISEEAYTGDGVLIN-SGELDGLDSEEAKEAIIAWLEEKGLGK----------------RK---------------- 410 (805)
T ss_pred cccccccccccCCeEEEe-ccccCCCCHHHHHHHHHHHHHHcCCCC----------------Cc----------------
Confidence 44442 388999999999999999999999731 11
Q ss_pred HHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHH-------------
Q 003160 305 AEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA------------- 371 (843)
Q Consensus 305 ~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~------------- 371 (843)
+.+ +++||||||||+||+|||+|+|++ ++...+. .+++
T Consensus 411 ------------v~~--------------~l~DW~ISRQR~WG~PIPi~~~~~-~g~~~v~--~~~l~~~l~~~~~~~~~ 461 (805)
T PRK00390 411 ------------VNY--------------RLRDWGISRQRYWGEPIPIIHCED-CGIVPVP--EEDLPVVLPEDVVPDGT 461 (805)
T ss_pred ------------eEE--------------ECCCccccccccCCCceeEEEECC-CCceeCc--hHhhhhhhhhhcccCCC
Confidence 221 368999999999999999999954 3432221 1111
Q ss_pred ---HHHHh----hhc-CCCceeEecCCCceEEEecCcccccccCCCCCC-----hhhhhhcCCCcEEEEeehhh------
Q 003160 372 ---LEKAH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL------ 432 (843)
Q Consensus 372 ---~~~~~----~~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~-----~~~~~~~~P~d~~~~G~Di~------ 432 (843)
+..+. ..| ..+..++|++|||||||||+ ||++.++||..+ +++|++|||+|++++|+|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y 540 (805)
T PRK00390 462 GSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSS-WYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLY 540 (805)
T ss_pred CChhhhchhhhCCCccccCCCceeCCcccccccccc-cHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHH
Confidence 00010 011 11346899999999999998 999998898632 47899999999999999976
Q ss_pred -hhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHH
Q 003160 433 -FFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER 510 (843)
Q Consensus 433 -~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~ 510 (843)
|||.+.|..+++ ..++.||++|++|||| |||||+||+|+|.+++++||||++|||+++.++ ++|++|+++.
T Consensus 541 ~Rf~~~~l~~~~~-~~~~~Pfk~v~~~G~v------KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~ 613 (805)
T PRK00390 541 ARFFTKVLRDLGL-VSSDEPFKKLLTQGMV------KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSG 613 (805)
T ss_pred HHHHHHHHHHhhc-ccCCcchhhheecCcE------EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHH
Confidence 566655555554 3688999999999999 999999999999999999999999999998766 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHH
Q 003160 511 LTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGR 590 (843)
Q Consensus 511 ~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~ 590 (843)
+.+.+++++++||++++..++...+. ......|+|++++++.++++++++|++|+|+.|++
T Consensus 614 l~~~~~~l~kl~~~~~~~~~~~~~~~-------------------~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~ 674 (805)
T PRK00390 614 VEGAYRFLQRVWRLVVDAKGEAGALD-------------------VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIA 674 (805)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccC-------------------cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998554432211 12245899999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCC
Q 003160 591 ETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTS 670 (843)
Q Consensus 591 ~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~ 670 (843)
.+++|+ ++++.+| + ..+..+++.+++.+++||+|||||+|||||+.|+. .+||+.++||+++
T Consensus 675 ~l~~f~-n~lsk~~-~---------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~-~~sv~~~~wP~~~ 736 (805)
T PRK00390 675 ALMELV-NALYKAE-D---------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH-EGSIANAPWPTAD 736 (805)
T ss_pred HHHHHH-HHHHHHH-H---------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC-CCeeEecCCCCCC
Confidence 999998 4666655 1 23567899999999999999999999999999975 4689999999876
Q ss_pred C-cCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEecCHHHHHHHHHHHHHHHHHcCCcccceeecCCCCCCCC
Q 003160 671 L-PRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDAN 749 (843)
Q Consensus 671 ~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~ 749 (843)
+ .. .+..++ -+++...++|....++.+. +.+++.+.+.....+-+.|.+-+..+++++ |+
T Consensus 737 ~~~~---~~~~~~---~~iqingk~r~~i~v~~~~-------~~~~i~~~a~~~~~i~~~l~~k~i~k~I~v------p~ 797 (805)
T PRK00390 737 EAAL---VEDEVT---IVVQVNGKVRGKIEVPADA-------SKEEIEALALADEKVQKFLEGKTIKKVIVV------PG 797 (805)
T ss_pred HHHh---hhhccE---EEEEEccceeEEEEeCCCC-------CHHHHHHHHhcCHHHHHHhCCCCccEEEEe------CC
Confidence 2 11 111122 2233334555555554431 233445555555666777766666677664 44
Q ss_pred CceEEEe
Q 003160 750 QSVHLVA 756 (843)
Q Consensus 750 ~~~~~~~ 756 (843)
..+++|+
T Consensus 798 kiiNiv~ 804 (805)
T PRK00390 798 KLVNIVV 804 (805)
T ss_pred CEEEEEe
Confidence 4555543
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=9.4e-119 Score=1078.39 Aligned_cols=619 Identities=27% Similarity=0.445 Sum_probs=496.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|+|.+++ +.|+++. +|++++++.|++||++||+++||+|+|
T Consensus 58 i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~----~~g~~p~------------~~~~~~~~~~~~~~~~lG~~~Dw~~~~ 121 (842)
T TIGR00396 58 LSRYYRMKGYNVLHPMGWDAFGLPAENAAI----KRGIHPA------------KWTYENIANMKKQLQALGFSYDWDREI 121 (842)
T ss_pred HHHHHHhcCCceeccCCcCCCChHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCcccCCCCc
Confidence 589999999999999999999999877653 4687764 699999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc---c--------------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE---E-------------------------- 131 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~---~-------------------------- 131 (843)
.|+||+|.+++||+|.+||++|||||+.++|+|||.|+|+|||+||++.. .
T Consensus 122 ~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~ 201 (842)
T TIGR00396 122 ATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLN 201 (842)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999995311 1
Q ss_pred ---------------------CCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhhh--------------
Q 003160 132 ---------------------PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQ-------------- 176 (843)
Q Consensus 132 ---------------------~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~-------------- 176 (843)
.+..++|+|++.+++.+|+|||||||||+|++||||||+++++..
T Consensus 202 ~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~ 281 (842)
T TIGR00396 202 DLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKK 281 (842)
T ss_pred HHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHH
Confidence 134578899998766799999999999999999999999975422
Q ss_pred -------------------hcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccC-
Q 003160 177 -------------------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK- 236 (843)
Q Consensus 177 -------------------l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~- 236 (843)
++|+++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++++.
T Consensus 282 ~~~~~~~~~~~~~~~~~g~~~g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~ 360 (842)
T TIGR00396 282 ILQKTTTERTKETKLKKGVFTGIKAIHPL-TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPA 360 (842)
T ss_pred HhccCchhhhhhhcccccEecCCEEECCC-CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCc
Confidence 7899999999 4899999999999999999999999999999999999999999999983
Q ss_pred -----------CCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHH
Q 003160 237 -----------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLA 305 (843)
Q Consensus 237 -----------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~ 305 (843)
+|.+++ .|.|+|+++.||+++|++.|+++|++.+ ++.+
T Consensus 361 ~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~----------------~v~y-------------- 409 (842)
T TIGR00396 361 GKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREAIIAMLEKEGKGKR----------------KVNY-------------- 409 (842)
T ss_pred ccccccccccCCceEec-chhcCCCCHHHHHHHHHHHHHHcCCCCc----------------eEEe--------------
Confidence 677774 5899999999999999999999998532 1110
Q ss_pred HHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecCh-----hH----------
Q 003160 306 EKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA-----DE---------- 370 (843)
Q Consensus 306 ~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~-----~~---------- 370 (843)
+++||||||||+||+|||+|+|++ ++.+.+..+. .+
T Consensus 410 ----------------------------rlrDW~ISRQRyWG~PIPi~~~~~-~g~~~v~~~~lp~~l~~~~~~~~~~~~ 460 (842)
T TIGR00396 410 ----------------------------RLRDWLFSRQRYWGEPIPIIHCED-GGAVPVPEEDLPVILPELVNYDPDGNS 460 (842)
T ss_pred ----------------------------ecccceeecccccCCceEEEEECC-CCeEeCcchhcchhhhhhhhccCCCCC
Confidence 478999999999999999999964 4433322210 00
Q ss_pred HHHHHh----hhc-CCCceeEecCCCceEEEecCcccccccCCCCCC-----hhhhhhcCCCcEEEEeehhh-------h
Q 003160 371 ALEKAH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDIL-------F 433 (843)
Q Consensus 371 ~~~~~~----~~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~-----~~~~~~~~P~d~~~~G~Di~-------~ 433 (843)
++.... ..| ..+..+.|++|||||||||+ ||+..+.+|... +++|++|||+|++++|.|+. |
T Consensus 461 pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaR 539 (842)
T TIGR00396 461 PLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSS-WYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYAR 539 (842)
T ss_pred chhhhhhhhcCcCccCCCCcEeCCCCCCCcccCC-HHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHH
Confidence 000000 111 11335889999999999998 998887777642 36799999999999999964 4
Q ss_pred hHHHHHHHHHhHhhCCCCceEEEEeeeEEC----CCCC---------------------------cccccCCCccChhhH
Q 003160 434 FWVARMVMMGIEFTGSVPFSHVYLHGLIRD----SQGR---------------------------KMSKTLGNVIDPIDT 482 (843)
Q Consensus 434 ~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d----~~G~---------------------------KMSKS~GNvI~p~di 482 (843)
||...|...++ +.++.||++|++||||+| ++|+ |||||+||+|+|.++
T Consensus 540 f~~~~l~~~~~-~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~i 618 (842)
T TIGR00396 540 FWHKFLYDIGY-VSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEI 618 (842)
T ss_pred HHHHHHHhccc-cCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHH
Confidence 44433333333 467899999999999999 8999 999999999999999
Q ss_pred HHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChh
Q 003160 483 IKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLP 561 (843)
Q Consensus 483 i~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (843)
+++||||++|||+++.++ ++|++|+++.+.+.+++++++||+++++.+++.+... . ....++..
T Consensus 619 i~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~-----------~----~~~~l~~~ 683 (842)
T TIGR00396 619 VKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTY-----------L----TPTILEEA 683 (842)
T ss_pred HHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----------C----CcccCCHH
Confidence 999999999999998766 9999999999999999999999999998766533210 0 01234568
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhC
Q 003160 562 ECWVVSKLHMLIDTVTASYDKYF-FGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLH 640 (843)
Q Consensus 562 d~~il~~l~~~~~~v~~~~e~~~-f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~ 640 (843)
|+|++++++.++++++++|++|+ |+.|++++++|++ ++++ |. . ..++..+++.+++||+
T Consensus 684 d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n-~L~~-~~-----------~-------~~~l~~~l~~ll~lLa 743 (842)
T TIGR00396 684 QKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLN-ALYK-AK-----------K-------DALYLEYLKGFLTVLS 743 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHh-hh-----------h-------HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999 9999999999983 4432 10 0 1378899999999999
Q ss_pred CCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEe-----cCHH
Q 003160 641 PFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIV-----ANEE 715 (843)
Q Consensus 641 P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~-----~~~~ 715 (843)
|||||+|||||+.|+..+.||+.++||+++. .... .-..+.-+.-+.+++..|. +.++
T Consensus 744 Pf~PhiaEElW~~l~~~~~sv~~~~wP~~d~----~~l~-------------~~~~~~~vqiNGK~r~~i~v~~~~~~~~ 806 (842)
T TIGR00396 744 PFAPHLAEELWEKLGSEPFIIKQAKWPKVDE----TALV-------------EDKVTIVLQVNGKFKAKKTVPKDADEEQ 806 (842)
T ss_pred hhhhHHHHHHHHHhCCCCCeeecCCCCCCCH----HHHh-------------hcceEEEEEEcCeEEEEEEeCCCCCHHH
Confidence 9999999999999985435899999998762 2110 0011222333344444433 2234
Q ss_pred HHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEe
Q 003160 716 VIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVA 756 (843)
Q Consensus 716 ~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 756 (843)
+.+...+...+.+.|.+.++.+++++ |+..+++|+
T Consensus 807 i~~~a~~~~~v~~~l~gk~i~k~i~v------~~klvNiv~ 841 (842)
T TIGR00396 807 VEELAKQDPEVKKYLENKTIKKVIYV------PGKLVNFVI 841 (842)
T ss_pred HHHHHhcCHHHHHHhCCCCceEEEEe------CCCEEEEEe
Confidence 44555556677788888777777765 445666554
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.9e-117 Score=1064.49 Aligned_cols=616 Identities=27% Similarity=0.439 Sum_probs=492.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||||+|..+ .+.|++|. +|+.++++.|++||++||+|+||+|+|
T Consensus 140 iaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a----~~~g~~p~------------~~~~~~i~~~~~q~~~lG~s~DW~r~~ 203 (963)
T PLN02563 140 LARYKRMQGYNVLHPMGWDAFGLPAEQYA----IETGTHPK------------ITTLKNIARFRSQLKSLGFSYDWDREI 203 (963)
T ss_pred HHHHHHhcCCeecccccccccCcHHHHHH----HHcCCChH------------HhHHHHHHHHHHHHHHhCcEeeCCCCe
Confidence 58999999999999999999999976543 45677665 588999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccccc--ccCCe------------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EEPGT------------------------ 134 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~--~~~~~------------------------ 134 (843)
+|+||.|+++|||+|.+||++|||||+.++|+|||.|+|+||++||++. +..+.
T Consensus 204 ~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~ 283 (963)
T PLN02563 204 STTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLED 283 (963)
T ss_pred ecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999874 22222
Q ss_pred ----------------------EEEEEEEecC-----CCeEEEEEeCCccccccCcEEEEcCCCc---------------
Q 003160 135 ----------------------LYYIKYRVAG-----RSDFLTIATTRPETLFGDVALAVNPQDE--------------- 172 (843)
Q Consensus 135 ----------------------~~~~~~~~~~-----~~~~l~v~TtrPeTl~g~~ai~v~P~~~--------------- 172 (843)
.++|+|++.+ .+.+|+|||||||||+|++||||||+++
T Consensus 284 l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~ 363 (963)
T PLN02563 284 LDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVE 363 (963)
T ss_pred hhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHH
Confidence 4788999865 2468999999999999999999999995
Q ss_pred hhhh--------------------hcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCcee
Q 003160 173 HYSQ--------------------FIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILN 232 (843)
Q Consensus 173 ~y~~--------------------l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~ 232 (843)
+|.. +.|.++.||++ ++.+||+.++||++++|||+||+|||||++||++|++||||+++
T Consensus 364 ~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~-~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~ 442 (963)
T PLN02563 364 EYVDAASRKSDLERTELQKEKTGVFTGSYAINPAT-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKW 442 (963)
T ss_pred HHHHHHhchhHHhhhhccceecccccCcEEeccCC-CCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCcee
Confidence 3321 46899999995 89999999999999999999999999999999999999999999
Q ss_pred eccC--------------CCcccccCCC----CCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeec
Q 003160 233 VMNK--------------DGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 294 (843)
Q Consensus 233 ~i~~--------------~G~~~~~~g~----~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~ 294 (843)
+|+. +|.+. ++|. |.|+.++||+++|++.|+++|++.+
T Consensus 443 vI~~~d~~~~~~~~~y~~~G~l~-ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------------- 498 (963)
T PLN02563 443 VVKPADGNEDDAEKAYTGEGVIV-NSSSSGLDINGLSSKEAAKKVIEWLEETGNGKK----------------------- 498 (963)
T ss_pred eeccCccccccccccccCceeEe-cCCCcccccCCcCHHHHHHHHHHHHHhCCCCCC-----------------------
Confidence 9942 24333 2344 9999999999999999999998621
Q ss_pred cceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHH---
Q 003160 295 KQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA--- 371 (843)
Q Consensus 295 ~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~--- 371 (843)
++++ +++||||||||+||+|||+|+|++ |+..+... .+++
T Consensus 499 ---------------------~v~y--------------~lrDW~ISRQRyWG~PIPi~~c~~-cg~~v~v~-e~~Lpv~ 541 (963)
T PLN02563 499 ---------------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLED-SGEPVPVP-ESDLPLT 541 (963)
T ss_pred ---------------------eeEe--------------cCCCceEeeecccCCceEEEEEcC-CCcEEecc-hHhCccc
Confidence 1222 589999999999999999999964 44333221 1110
Q ss_pred HH----------------HHh----hhc-CCCceeEecCCCceEEEecCcccccccCCCCCCh-----hhhhhcCCCcEE
Q 003160 372 LE----------------KAH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----DDFKKFYPTTML 425 (843)
Q Consensus 372 ~~----------------~~~----~~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~-----~~~~~~~P~d~~ 425 (843)
++ ... ..| .++..++|++|||||||+|+ |||..+.||.++. +.+++|+|+|++
T Consensus 542 lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Ss-wy~~r~~~p~~~~~~~~~~~~~~w~PvD~y 620 (963)
T PLN02563 542 LPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSC-WYYLRFMDPKNSNALVDKEKEKYWMPVDLY 620 (963)
T ss_pred chhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhcc-HHHHHHhCCCccccccCHHHHhCcCCCcEe
Confidence 00 000 001 11346899999999999997 8888888998642 345689999999
Q ss_pred EEeehhh-------hhHHHHHHHHHhHhhCCCCceEEEEeeeEEC---------CCCC----------------------
Q 003160 426 ETGHDIL-------FFWVARMVMMGIEFTGSVPFSHVYLHGLIRD---------SQGR---------------------- 467 (843)
Q Consensus 426 ~~G~Di~-------~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d---------~~G~---------------------- 467 (843)
++|.|+. |||+.+|+.+|+ ..++.||++|++||||+| .+|+
T Consensus 621 igG~dhailHLlY~Rfw~~~l~~~g~-~~~~ePfk~ll~qGmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~ 699 (963)
T PLN02563 621 VGGAEHAVLHLLYARFWHKVLYDIGV-VSTKEPFQCLVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEK 699 (963)
T ss_pred eccHHHHhhHhHHHHHHHHHHHHhhc-cCCcccHHHHhccceeecCccccceecCCCcCccccccccccccccccccccc
Confidence 9999994 899999999998 477899999999999998 7777
Q ss_pred -----------------------cccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHH
Q 003160 468 -----------------------KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWN 523 (843)
Q Consensus 468 -----------------------KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N 523 (843)
|||||+||||+|.++|++||||+||||+++.++ .+|..|+.+.+.+.++|++++||
T Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn 779 (963)
T PLN02563 700 VIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWR 779 (963)
T ss_pred ccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 99999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHH
Q 003160 524 AGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADW 603 (843)
Q Consensus 524 ~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~ 603 (843)
++.....+...+.+ . ........|+|++++++.++++++++|++|+|++|++++++|++ .+++|
T Consensus 780 ~~~~~~~~~~~~~~--------------~-~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n-~l~~~ 843 (963)
T PLN02563 780 LVVGAPLPDGSFRD--------------G-TVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTN-AAYKW 843 (963)
T ss_pred HHHHhhhcccccCc--------------c-ccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhCc
Confidence 97643211111110 0 00111246899999999999999999999999999999999984 44321
Q ss_pred HHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHH
Q 003160 604 YIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFEN 683 (843)
Q Consensus 604 Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~ 683 (843)
+ .++.++++.+++||+|||||+|||||+.|+.. +||+.++||+++. ....
T Consensus 844 ~---------------------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~-~sv~~~~WP~~d~----~~l~---- 893 (963)
T PLN02563 844 D---------------------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS-NSLAYEPWPEANP----SYLV---- 893 (963)
T ss_pred h---------------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-CeeeeCCCCCCCH----HHhh----
Confidence 1 13457899999999999999999999999854 6999999999862 1110
Q ss_pred HHHHHHHHHhhhhhcCCCccceeeEEEe----cC-HHHHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEec
Q 003160 684 LQSLTRAIRNARAEYSVEPAKRISASIV----AN-EEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVAS 757 (843)
Q Consensus 684 ~~~vv~~ir~~r~~~~i~~~~~~~~~i~----~~-~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 757 (843)
.-.-++.|.-+.+++..|. .+ +++.+...+...+.+.|.+.++.+++++ |+..+++|+.
T Consensus 894 ---------~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i~K~I~v------p~kivNiV~~ 957 (963)
T PLN02563 894 ---------DDTVVLPVQINGKTRGTIEVEEGCSEDDAFALASQDEKLSKYLDGKEIKKRIYV------PGKILNVILK 957 (963)
T ss_pred ---------cCceEEEEEECCEEeeEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEEE------CCcEEEEEeC
Confidence 0011333444455555443 22 3344555556677788888888888775 4567776663
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-94 Score=831.37 Aligned_cols=554 Identities=29% Similarity=0.490 Sum_probs=438.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|||||||+|||++|+|+ |..+.+.|.+|. .|++++++.+++||++||+|+||+|++
T Consensus 63 ~aRykRm~GyNVL~PMGwdafGlPa----e~~A~~~~~~P~------------~wt~~ni~~~k~qlk~lG~siDW~Ref 126 (814)
T COG0495 63 IARYKRMQGYNVLHPMGWDAFGLPA----ENAAIKIGTDPA------------KWTYYNIAYMKKQLKSLGFSIDWRREF 126 (814)
T ss_pred HHHHHHhcCCeecccCcccccCchH----HHHHHHhCCChH------------HHHHHHHHHHHHHHHHhCCccccccce
Confidence 5899999999999999999999995 555667788776 699999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccccc------cc-----------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS------EE----------------------- 131 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~------~~----------------------- 131 (843)
.|+||+|++++||+|.+|+++||||+++++|||||.|+|+|+|+||... ..
T Consensus 127 ~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~ 206 (814)
T COG0495 127 ATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDD 206 (814)
T ss_pred ecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhh
Confidence 9999999999999999999999999999999999999999999999754 10
Q ss_pred ---------------------CCeEEEEEEEecCC--CeEEEEEeCCccccccCcEEEEcCCCchhh-------------
Q 003160 132 ---------------------PGTLYYIKYRVAGR--SDFLTIATTRPETLFGDVALAVNPQDEHYS------------- 175 (843)
Q Consensus 132 ---------------------~~~~~~~~~~~~~~--~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~------------- 175 (843)
.+.-+.+.|.+.+. ...+.|+||||.|++|.+.+++.|+++.-.
T Consensus 207 l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~ 286 (814)
T COG0495 207 LDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAE 286 (814)
T ss_pred hhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHH
Confidence 11223344444332 246899999999999999999999985210
Q ss_pred ----------------------hhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceee
Q 003160 176 ----------------------QFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV 233 (843)
Q Consensus 176 ----------------------~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~ 233 (843)
-..|.+++||++ +..|||+.++||.+.+|||+||.+|||+..||+.|++++||+..+
T Consensus 287 fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~-~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~v 365 (814)
T COG0495 287 FVDECKGTGVVESVPAHAEKDGVFLGGYAINPVN-GEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKV 365 (814)
T ss_pred HHHHhcCCCceeeeeccCCCcceeccccccCCCC-CCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEE
Confidence 145778899995 699999999999999999999999999999999999999999988
Q ss_pred ccCC-----------CcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecc
Q 003160 234 MNKD-----------GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME 302 (843)
Q Consensus 234 i~~~-----------G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~ 302 (843)
+... |.+. +++.++|+...+|...+... ++-+...|||++++
T Consensus 366 i~~~~~~~~~~~~~~g~li-nS~~~~gl~~e~a~~~~~~~--------------------------l~~~~~~q~~v~Y~ 418 (814)
T COG0495 366 IMPEGTVGKKVYEGEGVLI-NSGGLDGLDYEEAKVKIRCG--------------------------LVKRGLGQWFVNYR 418 (814)
T ss_pred EecCCCcccceeccCceEe-ccccccCcchhHHHHHHHHh--------------------------HHHhcCCceEEecc
Confidence 8643 3432 56678888888665555444 34455689999984
Q ss_pred hHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhh-----
Q 003160 303 PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQ----- 377 (843)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~----- 377 (843)
++||.+||||+||.|||+.+|+. ++ .+...++.+...++.
T Consensus 419 --------------------------------lrdW~~srqRywg~pipii~~e~-~~--~~~~~~d~Lpv~lp~~~~~~ 463 (814)
T COG0495 419 --------------------------------LRDWLKSRQRYWGEPIPIIHCED-CG--VVPVPEDWLPVKLPERVRGL 463 (814)
T ss_pred --------------------------------cchHHHHHHHHhCCCcceeEccc-CC--cccCchHhcCcccccccccC
Confidence 68999999999999999999864 22 111111111111110
Q ss_pred --------------hcCCCceeEecCCCceEEEecCcccccccCCCCC------ChhhhhhcCCCcEEEEeehhhhhHHH
Q 003160 378 --------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDV------SADDFKKFYPTTMLETGHDILFFWVA 437 (843)
Q Consensus 378 --------------~~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~------~~~~~~~~~P~d~~~~G~Di~~~W~~ 437 (843)
..+.+.+.+|+.||||+|++|+ ||+..+--|.. .+++|++|||+|++++|+|.+-.|..
T Consensus 464 gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ss-wy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHLl 542 (814)
T COG0495 464 GTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSS-WYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHLL 542 (814)
T ss_pred CCCCCCCCCcceEEEecCCCceeeehhhhhHhcccc-cccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHHH
Confidence 0022367899999999999998 88764422221 15789999999999999999866555
Q ss_pred HHHHHHhHhh------CCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHH
Q 003160 438 RMVMMGIEFT------GSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIER 510 (843)
Q Consensus 438 ~~~~~~~~~~------~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~ 510 (843)
+..+...++. ...||++++++|||+..+|+|||||+||+|+|++++++||||++|+|++++++ .+|++|+++.
T Consensus 543 y~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~g 622 (814)
T COG0495 543 YFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESG 622 (814)
T ss_pred HHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhh
Confidence 5544444442 35789999999999955899999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc-CChHHHH
Q 003160 511 LTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK-YFFGDVG 589 (843)
Q Consensus 511 ~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~-~~f~~a~ 589 (843)
+++.++|++++|+++.-.......... ......++|+++++.. .+++.+++ +.|+.|+
T Consensus 623 v~g~~rfL~r~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~h~~~~---~v~~~~e~~~~~nt~i 681 (814)
T COG0495 623 VEGARRFLQRVWNLVKEHLEKLVEELT------------------KEQGKEDRWLLHRTIK---KVTEDFEARQTFNTAI 681 (814)
T ss_pred hHHHHHHHHHHHHHHHHhhhccccccc------------------chhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999987654432210000 0111567887765555 45555555 8999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCC
Q 003160 590 RETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQT 669 (843)
Q Consensus 590 ~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~ 669 (843)
..+|+|+ +...+|....... ..++..+++.+++||+||+||+|||||+.|++. ++|..++||+.
T Consensus 682 ~~~m~l~--N~l~~~~~~~~~~-------------~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~-~~v~~~~wP~~ 745 (814)
T COG0495 682 AALMELL--NALRKYLRRTEGD-------------RKVLREALETWVRLLAPFAPHIAEELWEELGNE-GFVSNAPWPEP 745 (814)
T ss_pred HHHHHHH--HHHHHHHhcccch-------------HHHHHHHHHHHHHHhcccccHHHHHHHHHhcCC-CceeeCCCCCC
Confidence 9999998 4456675433211 167888999999999999999999999999864 48999999998
Q ss_pred CC
Q 003160 670 SL 671 (843)
Q Consensus 670 ~~ 671 (843)
++
T Consensus 746 de 747 (814)
T COG0495 746 DE 747 (814)
T ss_pred Ch
Confidence 83
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-86 Score=716.51 Aligned_cols=564 Identities=26% Similarity=0.414 Sum_probs=433.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|++|+|||.+||| +|+++.+.|++|. .|+.++++.|++||++||+++||+||.
T Consensus 86 laRf~rm~GynVihPMGWDaFGLP----AENAAiergv~P~------------sWT~~NI~~Mk~Ql~~lg~~FDWdrEi 149 (876)
T KOG0435|consen 86 LARFYRMKGYNVIHPMGWDAFGLP----AENAAIERGVHPA------------SWTINNIAKMKQQLKSLGISFDWDREI 149 (876)
T ss_pred HHHHHHhcCceeecCCcccccCCc----hhhHHHhcCCCch------------hhhHHHHHHHHHHHHHcCccccccccc
Confidence 489999999999999999999999 6788889999998 599999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc------------------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE------------------------------ 130 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~------------------------------ 130 (843)
.|++|+|++++||+|.+||++||.||.+.+|||||.++|+||+++|+-..
T Consensus 150 STC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d 229 (876)
T KOG0435|consen 150 STCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLD 229 (876)
T ss_pred ccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994221
Q ss_pred -------------------cCCeEEEEEEEecCCC---eEEEEEeCCccccccCcEEEEcCCCch------hhh------
Q 003160 131 -------------------EPGTLYYIKYRVAGRS---DFLTIATTRPETLFGDVALAVNPQDEH------YSQ------ 176 (843)
Q Consensus 131 -------------------~~~~~~~~~~~~~~~~---~~l~v~TtrPeTl~g~~ai~v~P~~~~------y~~------ 176 (843)
..+.-..+.|++.++. +.|.|+|||||||+|.+.+++.|++.. +++
T Consensus 230 ~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~~lkefl~~~~ 309 (876)
T KOG0435|consen 230 GLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDSSLKEFLSKSD 309 (876)
T ss_pred HHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhchHHHhhhhhh
Confidence 1223356788886543 899999999999999999999999853 222
Q ss_pred hc------ccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceee----ccCCCcccccCCC
Q 003160 177 FI------GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNV----MNKDGTLNEVAGL 246 (843)
Q Consensus 177 l~------g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~----i~~~G~~~~~~g~ 246 (843)
|- +-.+.+|++ |+.|||+.++||..-.|||+|+.+|+|+..|++++++-++..+.+ ++.+|+.++ .+.
T Consensus 310 l~~Kg~~lp~~A~Np~t-g~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~~-~~~ 387 (876)
T KOG0435|consen 310 LPQKGVQLPCQAKNPVT-GRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKNE-QKA 387 (876)
T ss_pred ccccCcccceeeccCCC-CceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeeeecchhhhhc-ccc
Confidence 22 335888994 999999999999999999999999999999999999966654333 455666653 345
Q ss_pred CCC-CcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhH
Q 003160 247 FRG-LDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFE 325 (843)
Q Consensus 247 ~~G-~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~ 325 (843)
+.| +.+.+|+.+|++.++..|+.-....+
T Consensus 388 ~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~-------------------------------------------------- 417 (876)
T KOG0435|consen 388 FTNLDIRQNAALKLFQFAERKGVGGYVVSY-------------------------------------------------- 417 (876)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCCcceecc--------------------------------------------------
Confidence 688 66678899999998887743211100
Q ss_pred HHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHH----------------HHHHhh----hc-CCCce
Q 003160 326 KIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEA----------------LEKAHQ----KY-GKNVE 384 (843)
Q Consensus 326 ~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~-~~~~~ 384 (843)
.|+||.|||||+||+|||+.+|+. |+. ++-.++++ +..+.. .| ..+..
T Consensus 418 --------kLkDWLiSRQRyWGTPIPivhc~~-cG~--vpVpes~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~p 486 (876)
T KOG0435|consen 418 --------KLKDWLISRQRYWGTPIPIVHCDD-CGA--VPVPESELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEP 486 (876)
T ss_pred --------hhhhhhhhhhhccCCCcceEEcCC-CCc--ccCcHHHCCcccccccccCCCCCcccchhhheeccCccCCCc
Confidence 478999999999999999999954 442 22222221 111111 01 11236
Q ss_pred eEecCCCceEEEecCcccccccCCCCCC-----hhhhhhcCCCcEEEEee--hhhhhHHHHHHHHHhHh----hCCCCce
Q 003160 385 IYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGH--DILFFWVARMVMMGIEF----TGSVPFS 453 (843)
Q Consensus 385 ~~~~~dvlD~WFdS~l~~~~~~g~p~~~-----~~~~~~~~P~d~~~~G~--Di~~~W~~~~~~~~~~~----~~~~Pf~ 453 (843)
.+||+|+||||+||+ |||..+--|.+. ++.-++|.|+|+|+.|+ .+++..++|++.--+.- ....||+
T Consensus 487 AkRETDTMDTFvDSs-WYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~ 565 (876)
T KOG0435|consen 487 AKRETDTMDTFVDSS-WYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFT 565 (876)
T ss_pred ccccccccchhhccc-eeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHH
Confidence 889999999999998 887766556554 23356899999999994 56666666665433322 3468999
Q ss_pred EEEEeeeEECC------CC-------------------------------CcccccCCCccChhhHHHhhChhHHHHHHH
Q 003160 454 HVYLHGLIRDS------QG-------------------------------RKMSKTLGNVIDPIDTIKEFGADALRFTIS 496 (843)
Q Consensus 454 ~v~~hg~v~d~------~G-------------------------------~KMSKS~GNvI~p~dii~~yGaDalR~~l~ 496 (843)
.++.+|+|+.. .| +|||||++|+|||.+++++||+|++|++++
T Consensus 566 ~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~il 645 (876)
T KOG0435|consen 566 KLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYIL 645 (876)
T ss_pred HHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHH
Confidence 99999999742 11 799999999999999999999999999999
Q ss_pred hCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHH
Q 003160 497 LGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDT 575 (843)
Q Consensus 497 ~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~ 575 (843)
.+++ ..+++|+++.+.+..+++.++|++...+...-++-...+ . ..........++-+.+..|..++.
T Consensus 646 f~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d---------~--~~~td~~dae~~kl~~~~n~fi~~ 714 (876)
T KOG0435|consen 646 FAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKD---------L--KKLTDGFDAETRKLKETYNFFIKQ 714 (876)
T ss_pred hhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCccc---------c--cccccccchhHHHHHHHHHHHHHH
Confidence 9888 999999999999999999999999866654321111100 0 000111133567899999999999
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 003160 576 VTASYDK-YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 576 v~~~~e~-~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L 654 (843)
|+++|+. +.++.|+..++.|. |.+...+ |.-+.- .......|+.+.++|+|++||+|+|+|+.|
T Consensus 715 vt~~~e~~~slNtaIS~~m~lt-N~l~~a~----k~~~~h----------~~~~~~al~~lv~mlaP~aPh~asE~Ws~l 779 (876)
T KOG0435|consen 715 VTEHYEVLFSLNTAISDMMGLT-NALKKAL----KIVLVH----------SPEFERALEALVIMLAPFAPHVASELWSAL 779 (876)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHhh----hhhhhc----------ChHHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 9999985 66999999999997 4444433 111111 112334577888999999999999999999
Q ss_pred ccCCCceEecCCCCCC
Q 003160 655 RKRKEALIVSPWPQTS 670 (843)
Q Consensus 655 ~~~~~si~~~~~P~~~ 670 (843)
+....-.....||+++
T Consensus 780 ~~~~~~~~~~~WP~vd 795 (876)
T KOG0435|consen 780 ANDLSWVSDVKWPEVD 795 (876)
T ss_pred hccccchhccCCccCC
Confidence 8653211223599886
No 29
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-81 Score=734.15 Aligned_cols=476 Identities=22% Similarity=0.344 Sum_probs=390.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|+|++|||+||+||+.+++ ++|+++. +|++++.+.+.+++++||+++|+ .+
T Consensus 33 ~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~----~~g~~~~------------~~~~~~~~~~~~~~~~l~i~~d~--~~ 94 (556)
T PRK12268 33 FARYQRLKGNEVLFVSGSDEHGTPIELAAK----KEGVTPQ------------ELADKYHEEHKEDFKKLGISYDL--FT 94 (556)
T ss_pred HHHHHHhcCCceEecCcCCCcccHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHcCCcCCC--Cc
Confidence 589999999999999999999999877664 4688765 58899999999999999998774 56
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+||+|.+.++++|.+|+++|+||++.++|+|||.|+|+|++..|.
T Consensus 95 ~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~--------------------------------- 141 (556)
T PRK12268 95 RTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE--------------------------------- 141 (556)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---------------------------------
Confidence 79999999999999999999999999999999999999999875431
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
|+ ||.|+.. +.+|.+
T Consensus 142 --------------------------------------------g~-----cp~c~~~----------------~~~G~~ 156 (556)
T PRK12268 142 --------------------------------------------GT-----CPYCGYE----------------GARGDQ 156 (556)
T ss_pred --------------------------------------------cc-----CCCCCCc----------------ccCCch
Confidence 21 6655543 368999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
||.||.. .++.+...|+|+|||+++|++.++||||++++++++++++++ ++.++
T Consensus 157 ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~--~~~~~ 210 (556)
T PRK12268 157 CDNCGAL------------------------LDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIE--SSGDW 210 (556)
T ss_pred hhhcccc------------------------CChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHh--hccCC
Confidence 9999863 123345569999999999999999999999999999999997 36789
Q ss_pred cchhHHHHHHHhh-CCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160 321 PERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 399 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~ 399 (843)
|+..++++.+||+ +++|||||||++||+||| |.+. +..++|||||+.
T Consensus 211 p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP-~~~~-------------------------------~~~~iyvW~da~ 258 (556)
T PRK12268 211 PPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP-WPGF-------------------------------EGKVFYVWFDAV 258 (556)
T ss_pred CHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC-CCCC-------------------------------CCcEEEEeehHh
Confidence 9999999999999 999999999999999999 6531 236899999998
Q ss_pred cccccccC-CCCC--ChhhhhhcC----CCcEEEEeehhhhhHHHHHHH--HHhHhhCCCCceEEEEeeeEECCCCCccc
Q 003160 400 LWPFSTLG-WPDV--SADDFKKFY----PTTMLETGHDILFFWVARMVM--MGIEFTGSVPFSHVYLHGLIRDSQGRKMS 470 (843)
Q Consensus 400 l~~~~~~g-~p~~--~~~~~~~~~----P~d~~~~G~Di~~~W~~~~~~--~~~~~~~~~Pf~~v~~hg~v~d~~G~KMS 470 (843)
+.|++.++ +... ...+|..|| |.+++++|+||++||....-+ ++.....++| +++++||||+ .+|+|||
T Consensus 259 ~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P-~~v~~~G~v~-~~G~KMS 336 (556)
T PRK12268 259 IGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLP-DEIVSSEYLT-LEGGKFS 336 (556)
T ss_pred hHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCC-CEeeccCCEE-ECCeeec
Confidence 88876543 2221 125688888 778999999999987643322 2222124567 6999999998 5899999
Q ss_pred ccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 003160 471 KTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAY 547 (843)
Q Consensus 471 KS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~ 547 (843)
||+||+|+|.+++++||+|++|||+++.++ ++|++|+++.+.. ++++++++||.++++...+.....
T Consensus 337 KS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~---------- 406 (556)
T PRK12268 337 KSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFG---------- 406 (556)
T ss_pred cCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcC----------
Confidence 999999999999999999999999999887 9999999999865 778999999987665432211000
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHH
Q 003160 548 KFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAV 627 (843)
Q Consensus 548 ~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~ 627 (843)
+ ......++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...+++......+..+
T Consensus 407 ~---~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~--~~~n~yi~~~kpw~~~~~~~~~~~~~l~~ 481 (556)
T PRK12268 407 G---IVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELA--REANKYLDEKAPWKLAKTDRERAATVLYT 481 (556)
T ss_pred C---cCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHcCCChhhhcCCHHHHHHHHHH
Confidence 0 000123466899999999999999999999999999999999998 69999999999997654333344556667
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCC
Q 003160 628 LLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQT 669 (843)
Q Consensus 628 l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~ 669 (843)
+..+++.+++||+|||||+|||||++|+. +++..+.||..
T Consensus 482 ~~~~l~~~~~lL~P~~P~~aeei~~~Lg~--~~~~~~~w~~~ 521 (556)
T PRK12268 482 ALNLVRLLAVLLYPFLPFSAQKIWEMLGG--ENIEKLTWESL 521 (556)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHhCC--CCCcccchhhh
Confidence 77888999999999999999999999985 25666788754
No 30
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.6e-80 Score=722.32 Aligned_cols=460 Identities=27% Similarity=0.392 Sum_probs=393.1
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|+|++|||+||+||+.++ +++|+++. ++++.+.+.+++++++||+++|+ ..
T Consensus 28 l~R~~r~~G~~V~~v~g~D~~g~~i~~~a----~~~g~~~~------------e~~~~~~~~~~~~l~~LgI~~D~--~~ 89 (530)
T TIGR00398 28 YARYKRLRGYEVLFVCGTDEHGTKIELKA----EQEGLTPK------------ELVDKYHEEFKDDWKWLNISFDR--FI 89 (530)
T ss_pred HHHHHHhcCCeEEEecccCCCCcHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCCCCC--Cc
Confidence 58999999999999999999999986665 45687765 57789999999999999999984 23
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 90 ~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~--------------------------------- 136 (530)
T TIGR00398 90 RTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE--------------------------------- 136 (530)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc---------------------------------
Confidence 49999999999999999999999999999999999999999887542
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
| .||.|+..| .+|.+
T Consensus 137 --------------------------------------------g-----~cp~c~~~~----------------~~g~~ 151 (530)
T TIGR00398 137 --------------------------------------------G-----TCPKCGSED----------------ARGDH 151 (530)
T ss_pred --------------------------------------------C-----CCCCCCCcc----------------cccch
Confidence 2 267777753 68999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCC-eeE
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGE-LTI 319 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~-~~~ 319 (843)
|++||.+ .++.++.+|+|+|||+++|++.++||||+++++++++++++++++ ..+
T Consensus 152 ce~cg~~------------------------~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 207 (530)
T TIGR00398 152 CEVCGRH------------------------LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGS 207 (530)
T ss_pred hhhcccc------------------------CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCC
Confidence 9999863 467778899999999999999999999999999999999998643 445
Q ss_pred ecchhHHHHHHHhhC-CCceeeeeecc-cCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 320 MPERFEKIYNHWLSN-IKDWCISRQLW-WGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~-l~DW~ISRq~~-WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
.|+..++.+.+||++ ++|||||||++ ||||||.| +.+|+|||||
T Consensus 208 ~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~----------------------------------~~~~~yvW~d 253 (530)
T TIGR00398 208 PASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPND----------------------------------PNKVVYVWFD 253 (530)
T ss_pred CcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCC----------------------------------CCcEEEEeec
Confidence 688888999999987 99999999999 99999953 1369999999
Q ss_pred cCcccccccCCCCCChhhhhhcCCCc-----EEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCc
Q 003160 398 SALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRK 468 (843)
Q Consensus 398 S~l~~~~~~g~p~~~~~~~~~~~P~d-----~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~K 468 (843)
|+++|++.++++.....+|++|||++ ++++|+||++| |++++++ + +..||+++++||||++. |+|
T Consensus 254 a~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~--~---~~~~~~~~~~~g~v~~~-g~K 327 (530)
T TIGR00398 254 ALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMG--L---GLPLPTQVFSHGYLTVE-GGK 327 (530)
T ss_pred chHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHh--C---CCCCCCEEEeeccEEEC-Cce
Confidence 99999998888754436799999999 99999999996 4554433 2 23567999999999965 999
Q ss_pred ccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCC-CCchhHHHHH
Q 003160 469 MSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPS-QNDISRWEIL 544 (843)
Q Consensus 469 MSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~~~ 544 (843)
||||+||+|+|.|++++||+|++|||+++.++ ++|++|+++.+.. ++++++++||+++++...+.. +...
T Consensus 328 mSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~------ 401 (530)
T TIGR00398 328 MSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGV------ 401 (530)
T ss_pred ecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------
Confidence 99999999999999999999999999999877 9999999999987 478999999998766543211 1000
Q ss_pred HhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHH
Q 003160 545 LAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIA 624 (843)
Q Consensus 545 ~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~ 624 (843)
. + ........|+|++++++.+++.+.++|++|+|+.|++.+++|+ +++|+|++.+|||.+.+++ ..++.+
T Consensus 402 ----~--~-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~~~~~~-~~~~~~ 471 (530)
T TIGR00398 402 ----L--P-SEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA--DRGNKYIDENKPWELFKQS-PRLKEL 471 (530)
T ss_pred ----C--C-CCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHhcCCChhhcCCh-HHHHHH
Confidence 0 0 0012346799999999999999999999999999999999998 7999999999999877533 356788
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHhcc
Q 003160 625 QAVLLYIFENILKLLHPFMPFVTEELWQSLRK 656 (843)
Q Consensus 625 ~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~ 656 (843)
+.+++.+++.++++|+|||||+||+||+.|+.
T Consensus 472 ~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 472 LAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 31
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=3.8e-80 Score=687.65 Aligned_cols=348 Identities=62% Similarity=1.152 Sum_probs=319.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|+|++|||+||+|||.++++++...+++++++++++|++.|++|++++++.++++|++||+++||++.|
T Consensus 30 ~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~ 109 (382)
T cd00817 30 IARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREY 109 (382)
T ss_pred HHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCc
Confidence 58999999999999999999999999999988866666777899999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+||.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|||+||
T Consensus 110 ~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---------------------------------- 155 (382)
T cd00817 110 FTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---------------------------------- 155 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----------------------------------
Confidence 9999999999999999999999999999999999999999977532
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 156 -------------------------------------------------------------------------------- 155 (382)
T cd00817 156 -------------------------------------------------------------------------------- 155 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
|+|||++++++.++||||++++++++++++++++++.|+
T Consensus 156 -----------------------------------------c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~ 194 (382)
T cd00817 156 -----------------------------------------CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFV 194 (382)
T ss_pred -----------------------------------------cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEE
Confidence 889999999999999999999999999999998889999
Q ss_pred cchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHh----hhcCCCceeEecCCCceEEE
Q 003160 321 PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAH----QKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 321 P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~dvlD~WF 396 (843)
|+..++.+.+||++++|||||||+.||+|||+|+|++ ++.+++....+++...+. ..+ .+..+++++|||||||
T Consensus 195 P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~dvWf 272 (382)
T cd00817 195 PERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKD-GGHWVVAREEDEAIDKAAPEACVPC-GGEELKQDEDVLDTWF 272 (382)
T ss_pred ChHHHHHHHHHHhhCccceeeeccccCCccceEEeCC-CCcEEecchhHHHHHHhccccccCC-CccCeeECCceeeeee
Confidence 9999999999999999999999999999999999964 455665555544433321 122 2447899999999999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 476 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNv 476 (843)
||+++|+++++||.+. ++|+++||+|++++|+||++||+.++++++..+.+..||+++++||+|+|.+|+|||||+||+
T Consensus 273 ds~~~~~~~~~~~~~~-~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~ 351 (382)
T cd00817 273 SSSLWPFSTLGWPEET-KDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNV 351 (382)
T ss_pred cCCCcHHHHhCCCCcc-hhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCC
Confidence 9999999999999775 779999999999999999999999999999988898999999999999999999999999999
Q ss_pred cChhhHHHhhChhHHHHHHHhCCc-cccccc
Q 003160 477 IDPIDTIKEFGADALRFTISLGTA-GQDLSL 506 (843)
Q Consensus 477 I~p~dii~~yGaDalR~~l~~~~~-~~D~~f 506 (843)
|+|.|++++||+|++|||+++.++ ++|.+|
T Consensus 352 v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 352 IDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred CCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999999887 999886
No 32
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.5e-78 Score=720.50 Aligned_cols=461 Identities=19% Similarity=0.279 Sum_probs=386.4
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+|++|+|++|||+||+|||..+ .+.|++|+ +|++++++.++++|++|||++| |.|
T Consensus 47 ~aRy~r~~G~~v~f~~GtDehG~~i~~~A----~~~g~~p~------------e~~d~~~~~~~~~~~~l~i~~D~f~r- 109 (801)
T PLN02610 47 FARYCRLRGYNAIYICGTDEYGTATETKA----LEENCTPK------------EICDKYHAIHKEVYDWFDISFDKFGR- 109 (801)
T ss_pred HHHHHHhCCCceEecccccCCcHHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHcCCccccCcc-
Confidence 58999999999999999999999987655 45788876 5789999999999999999998 555
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+||.|.++||++|.+|+++|+||++.++++|||+|+|+|+|..|+
T Consensus 110 --T~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~-------------------------------- 155 (801)
T PLN02610 110 --TSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVE-------------------------------- 155 (801)
T ss_pred --CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhc--------------------------------
Confidence 9999999999999999999999999999999999999999887552
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCC--CCHHhHHHHHHhCCCceeeccCC
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPG--HDHNDYLLARKLGLPILNVMNKD 237 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pa--h~~~D~~~~~~~~l~~~~~i~~~ 237 (843)
|| ||. |+.+| .+
T Consensus 156 ---------------------------------------------G~-----CP~~~C~~~~----------------a~ 169 (801)
T PLN02610 156 ---------------------------------------------GT-----CPTEGCNYDS----------------AR 169 (801)
T ss_pred ---------------------------------------------Cc-----CCccccCccc----------------cc
Confidence 33 776 76664 78
Q ss_pred CcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 238 GTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 238 G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
|..|+.||.+ .++.++..|+|.+||.+++.+.++||||++++++++++++++++.
T Consensus 170 Gd~Ce~Cg~~------------------------~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~- 224 (801)
T PLN02610 170 GDQCEKCGKL------------------------LNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS- 224 (801)
T ss_pred cchhhhcccc------------------------CChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC-
Confidence 9999999874 567788899999999999999999999999999999999998654
Q ss_pred eEecchhH---HHHHHHhh-CCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCce
Q 003160 318 TIMPERFE---KIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLD 393 (843)
Q Consensus 318 ~~~P~~~~---~~~~~~l~-~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD 393 (843)
+.|+... +...+||+ +|+||||||+..||+|+|. ++ -+..|+|
T Consensus 225 -~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~------~~--------------------------~~~~v~Y 271 (801)
T PLN02610 225 -VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPL------EK--------------------------YKDKVFY 271 (801)
T ss_pred -CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCC------CC--------------------------CCCcEEE
Confidence 3455443 35568996 6999999999999999993 10 0347999
Q ss_pred EEEecCccccccc-CCCCCChhhhhhcCCC--c---EEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEEC
Q 003160 394 TWFSSALWPFSTL-GWPDVSADDFKKFYPT--T---MLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRD 463 (843)
Q Consensus 394 ~WFdS~l~~~~~~-g~p~~~~~~~~~~~P~--d---~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d 463 (843)
||||+.+.|++.+ +|. ++|+.|||. + +|++|+||++| |++++++.+..+ .+| ++|++|||++
T Consensus 272 VWfDAl~~Yis~~~~~~----~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~--~~p-~~i~~~g~l~- 343 (801)
T PLN02610 272 VWFDAPIGYVSITACYT----PEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENW--TMM-KTISVTEYLN- 343 (801)
T ss_pred EehhhHHHHHHHHhhhh----hHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCc--CCC-CEEEeccCEe-
Confidence 9999999999876 774 358899976 6 89999999985 787766544321 245 8999999997
Q ss_pred CCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCC-----
Q 003160 464 SQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPS----- 534 (843)
Q Consensus 464 ~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~----- 534 (843)
.+|+|||||+||+|+|.++++. ||+|++||||++..+ ++|.+||++.+.. |.+++|+++|++.++...+..
T Consensus 344 ~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~ 423 (801)
T PLN02610 344 YEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAG 423 (801)
T ss_pred cCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999996 999999999999988 9999999999987 778999999987766543321
Q ss_pred CCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhcc
Q 003160 535 QNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYR 614 (843)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~ 614 (843)
++.. .. ..........|+|++++++++++++.++|++|+|+.|++.+++|. ++||+||+..+||...
T Consensus 424 ~~g~----------vp-~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~--~~~NkYIe~~kPW~L~ 490 (801)
T PLN02610 424 YGSV----------IP-DAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSIS--SEGNAYLQESQFWKLY 490 (801)
T ss_pred cCCc----------CC-CccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhhh
Confidence 1110 00 000012345689999999999999999999999999999999986 8999999999999655
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 615 SEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 615 ~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
+++.........++.+++..+++||+||||++|++||++|+..
T Consensus 491 k~d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 491 KEDKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCCC
Confidence 4344445566777788999999999999999999999999853
No 33
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.4e-78 Score=718.58 Aligned_cols=455 Identities=23% Similarity=0.368 Sum_probs=386.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|+|++|||+||+||+.+++ ++|++|. +|++++++.++++|++||+++|+ .+
T Consensus 31 ~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~----~~g~~p~------------e~~~~~~~~~~~~~~~l~i~~d~--f~ 92 (673)
T PRK00133 31 WVRYQRMRGHEVLFVCADDAHGTPIMLKAE----KEGITPE------------ELIARYHAEHKRDFAGFGISFDN--YG 92 (673)
T ss_pred HHHHHHhcCCeeEEeCccCCCChHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCCCCC--Cc
Confidence 589999999999999999999999877664 4688876 57899999999999999999983 34
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|.+.|+++|.+|+++|+||++.++|+|||.|+++|+|.+|+
T Consensus 93 rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~--------------------------------- 139 (673)
T PRK00133 93 STHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK--------------------------------- 139 (673)
T ss_pred cCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---------------------------------
Confidence 49999999999999999999999999999999999999999876432
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
|| ||.|+..| .+|..
T Consensus 140 --------------------------------------------g~-----cp~C~~~d----------------~~g~~ 154 (673)
T PRK00133 140 --------------------------------------------GT-----CPKCGAED----------------QYGDN 154 (673)
T ss_pred --------------------------------------------cc-----cCCCCCcc----------------cCCch
Confidence 33 77766653 67999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
|+.||.+ .++.+...|+|.+||++++++.++||||++++++++++++++++ ..|
T Consensus 155 ce~cg~~------------------------~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~-~~~- 208 (673)
T PRK00133 155 CEVCGAT------------------------YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRS-GEL- 208 (673)
T ss_pred hhhcccc------------------------CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcC-CCC-
Confidence 9999863 23344566999999999999999999999999999999999753 345
Q ss_pred cchhHHHHHHHhh-CCCceeeeeeccc-CCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 321 PERFEKIYNHWLS-NIKDWCISRQLWW-GHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISRq~~W-G~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
|+..++.+.+||+ +++|||||||++| |+|+| + .+..|+|||||+
T Consensus 209 ~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP-----~-----------------------------~~~~~iyVW~da 254 (673)
T PRK00133 209 QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIP-----G-----------------------------APGKVFYVWLDA 254 (673)
T ss_pred CHHHHHHHHHHHhCCCcccceeeeCCccceECC-----C-----------------------------CCCeEEEEcccc
Confidence 8899999999996 6999999999999 99999 2 024799999999
Q ss_pred Cccccccc-CCCCC-ChhhhhhcCC-Cc----EEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCC
Q 003160 399 ALWPFSTL-GWPDV-SADDFKKFYP-TT----MLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 467 (843)
Q Consensus 399 ~l~~~~~~-g~p~~-~~~~~~~~~P-~d----~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~ 467 (843)
.++|++.. +|+.. ..++|+.||| .+ +|++|+||++ ||++++++.++ .+| ++|++||||++ +|+
T Consensus 255 l~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~----~lP-~~v~~hg~v~~-~G~ 328 (673)
T PRK00133 255 PIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGY----RLP-TNVFAHGFLTV-EGA 328 (673)
T ss_pred hhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCC----CCC-CEEeeeccEEe-cCC
Confidence 99999876 68654 2357999994 42 9999999998 58887766443 345 99999999996 999
Q ss_pred cccccCCCccChhhHHHhhChhHHHHHHHhCCc-c-cccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCC-CCchhHHH
Q 003160 468 KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPS-QNDISRWE 542 (843)
Q Consensus 468 KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~-~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~-~~~~~~~~ 542 (843)
|||||+||+|+|.+++++||+|++||||++.++ + +|.+|+++.+.. ++++++++||+++++...+.. +..
T Consensus 329 KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~----- 403 (673)
T PRK00133 329 KMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDG----- 403 (673)
T ss_pred cccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 999999999999999999999999999999888 8 999999999865 788999999988776543211 110
Q ss_pred HHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHH
Q 003160 543 ILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAI 622 (843)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~ 622 (843)
. ......|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++.+|||...+++.+...
T Consensus 404 ---------~---~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~--~~~N~yi~~~kpw~~~~~~~~~~~ 469 (673)
T PRK00133 404 ---------K---LPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALA--DFANKYVDDNEPWKLAKQDGERLQ 469 (673)
T ss_pred ---------C---CCCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCCHHHHH
Confidence 0 01235699999999999999999999999999999999997 799999999999965543444556
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcc
Q 003160 623 IAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 656 (843)
Q Consensus 623 ~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~ 656 (843)
.+..+++.+++.+++||+|||||+||+||+.|+.
T Consensus 470 ~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 470 AVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 6777888889999999999999999999999985
No 34
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-78 Score=661.92 Aligned_cols=648 Identities=23% Similarity=0.354 Sum_probs=499.9
Q ss_pred cccccCCCcccCCCCcCcccccchHHHHHHHHH---cCCCC---------------------------------------
Q 003160 3 RYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAA---EGIKR--------------------------------------- 40 (843)
Q Consensus 3 Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~---~g~~~--------------------------------------- 40 (843)
-|+||+|++||||+|+.|.|+||-..+.|..++ -|.+|
T Consensus 75 ~y~rL~Gk~vLfPfgFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~ 154 (1080)
T KOG0437|consen 75 GYERLQGKNVLFPFGFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQ 154 (1080)
T ss_pred HHHHhcCceEEeecccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhccc
Confidence 489999999999999999999998766543221 12111
Q ss_pred ---------cccCHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcCccccCc--hhHHHHHHHHHHHHHHcCceeeC
Q 003160 41 ---------VELSRDEFTK--RVWEWKEKYGGTITSQIKRLGASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 41 ---------~~~~~~~f~~--~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
-.+++++..+ .+.+|..++...-.+++++||..+||+|+|.|+| |.|..+|+|+|.+|.+.|.|..|
T Consensus 155 kYQw~IM~slGl~deEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fg 234 (1080)
T KOG0437|consen 155 KYQWEIMESLGLPDEEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFG 234 (1080)
T ss_pred chhHHHHHHcCCCHHHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccC
Confidence 0223333221 4679999999999999999999999999999988 77999999999999999999999
Q ss_pred CcccccCCCCCcccCcccccccccCCeEEE--EEEEec-----------CCCeEEEEEeCCccccccCcEEEEcCCCch-
Q 003160 108 SYMVNWSPNLQTAVSDLEVEYSEEPGTLYY--IKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDEH- 173 (843)
Q Consensus 108 ~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~--~~~~~~-----------~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~- 173 (843)
+|...|||++++++.||+...+|..++.=| +|.++. +.+.|+++||.|||||+|+|+++|+|+.++
T Consensus 235 kRyTIyspkDgQpCmDHDR~sGEgV~PqeytliKle~le~~p~~l~~~~~~~v~lvAaTLRpetmyGQTnc~V~p~~~y~ 314 (1080)
T KOG0437|consen 235 KRYTIYSPKDGQPCMDHDRASGEGVGPQEYTLIKLEVLEPFPKALSSLKDLRVYLVAATLRPETMYGQTNCYVGPDIKYG 314 (1080)
T ss_pred cceeeecCCCCCcccccccccCCCCCcceEEEEEEEecccchhhccccccceeeeeehhcCCccccCccceEEcCCccEE
Confidence 999999999999999999999888776444 333332 234789999999999999999999999641
Q ss_pred ----------------------h------------------hhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecC
Q 003160 174 ----------------------Y------------------SQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISP 213 (843)
Q Consensus 174 ----------------------y------------------~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~P 213 (843)
| .+++|..+..|++....|.++++..|..++|||+|.++|
T Consensus 315 ~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~KGTGvVtsVp 394 (1080)
T KOG0437|consen 315 GFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILATKGTGVVTSVP 394 (1080)
T ss_pred eEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeeccCCceeEEeCC
Confidence 1 358899999999878899999999999999999999999
Q ss_pred CCCHHhHHHHHHh-------C----------CCceeecc------------------------------------CCCcc
Q 003160 214 GHDHNDYLLARKL-------G----------LPILNVMN------------------------------------KDGTL 240 (843)
Q Consensus 214 ah~~~D~~~~~~~-------~----------l~~~~~i~------------------------------------~~G~~ 240 (843)
+.+|+||...+.. | +|||.+.. .+|.|
T Consensus 395 sdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~y~e~fy~g~m 474 (1080)
T KOG0437|consen 395 SDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLAYLEGFYEGTM 474 (1080)
T ss_pred CCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHHHHHhhhcceE
Confidence 9999999988542 2 35555432 02332
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecch--HHHHHHHHHHcCCee
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP--LAEKALHAVEKGELT 318 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~--~~~~~~~~~~~~~~~ 318 (843)
-.|+|.|.++.+++..|-.+|.+.|.+++...-+. ++-+|||+.++..+++|||+++.+ +++.+.+++++ ++
T Consensus 475 --lig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEk--qVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe~--l~ 548 (1080)
T KOG0437|consen 475 --LIGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEK--QVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLEN--LN 548 (1080)
T ss_pred --EEeccccccHHhhhhHHHHHHHhcccceeecCcch--hhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHhh--hh
Confidence 25889999999999999999999999886543332 345799999999999999999986 99999999975 55
Q ss_pred EecchhHHHHHHHhhCCCceeeeeecccCCCCce---EEEcCCcc--cEEEecChhHHHHHHhhhcCC-----CceeEec
Q 003160 319 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE--EYIVARNADEALEKAHQKYGK-----NVEIYQD 388 (843)
Q Consensus 319 ~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 388 (843)
.+-+..++.+..-|+||+.|.|||..+.|++||+ |.+++++| -|++..+..+++... -+|. ++...|.
T Consensus 549 ~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d--~~g~~~~plgi~~~QM 626 (1080)
T KOG0437|consen 549 TFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRD--LYGKVEGPLGIKPDQM 626 (1080)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHh--hccCCcccCCCChhhc
Confidence 5666678889999999999999999999999997 55555544 266667777776652 2222 2233342
Q ss_pred -CCCceEEEecCcccccccCCCCCC----hhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHh--hCCCCceEEEEeeeE
Q 003160 389 -PDVLDTWFSSALWPFSTLGWPDVS----ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF--TGSVPFSHVYLHGLI 461 (843)
Q Consensus 389 -~dvlD~WFdS~l~~~~~~g~p~~~----~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~--~~~~Pf~~v~~hg~v 461 (843)
++|+|.-|--... ...+..|.+. +++|++|||.|++++|+|++..|..+++....++ ..++| +.+..+||+
T Consensus 627 tdeVwdYvF~~~~~-~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WP-kgiraNGHL 704 (1080)
T KOG0437|consen 627 TDEVWDYVFLNEPY-PKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWP-KGIRANGHL 704 (1080)
T ss_pred CHHHHHHhhccCCC-CcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCc-cceeeCceE
Confidence 3466655543321 1222222221 5799999999999999999987776666555544 46799 999999999
Q ss_pred ECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 003160 462 RDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISR 540 (843)
Q Consensus 462 ~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~ 540 (843)
+ .+++|||||.||+.+..+.|++||||+.|+.|+.++. .+|.||.+.... ..+-+|++...++...+.+.+
T Consensus 705 m-LNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~An---AaILRLyt~~ew~eEm~~~~s---- 776 (1080)
T KOG0437|consen 705 M-LNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANAN---AAILRLYTYVEWIEEMCENRS---- 776 (1080)
T ss_pred E-ecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhccc---HHHHHHHHHHHHHHHHHhhHH----
Confidence 8 9999999999999999999999999999999999888 899999876443 355667776666655433211
Q ss_pred HHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHhhhHHHHHhhhhhhccCCChH
Q 003160 541 WEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRE-TYDFFWSDFADWYIEASKARLYRSEYDS 619 (843)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~-i~~f~~~~~~~~Yle~~K~~l~~~~~~~ 619 (843)
.+. .++ ...+.|+.+.+.+|.++...+++|+...|.+|++. .++|. ...|+|-+++-
T Consensus 777 --~Lr-tGp-------~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~q--aArD~Yrel~g---------- 834 (1080)
T KOG0437|consen 777 --SLR-TGP-------ASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQ--AARDMYRELCG---------- 834 (1080)
T ss_pred --hhc-cCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH--HHHHHHHHHhc----------
Confidence 111 111 11378999999999999999999999999999987 67775 67899977653
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHh
Q 003160 620 DAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRN 693 (843)
Q Consensus 620 ~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~ 693 (843)
..+...++...+++...||+||+||+||.||+.+..++.|+ ...||.++.. ++.+...-..+++.++.+|.
T Consensus 835 -~~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~~~~~v-~~~wP~~s~~-~e~~~~~~~yl~~~l~r~~~ 905 (1080)
T KOG0437|consen 835 -EGMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLKKNFSV-NVGWPFVSPP-DEKLGSSALYLKRTLKRLRA 905 (1080)
T ss_pred -ccccHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCCcee-ecCCCCCCCH-HHHhhhhHHHHHHHHHHHHH
Confidence 12456788889999999999999999999999998766555 4599998742 23333333344454444443
No 35
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-77 Score=712.59 Aligned_cols=433 Identities=24% Similarity=0.374 Sum_probs=371.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+|++|+|++|||+||+||+. .++++|++++ ++++++.+.|+++|++||+++| |.|
T Consensus 33 ~~R~~r~~G~~v~~~~g~D~~g~~i~~----~A~~~g~~~~------------e~~d~~~~~fk~~l~~lgI~~D~f~r- 95 (648)
T PRK12267 33 LARYKRLQGYDVFFLTGTDEHGQKIQQ----AAEKAGKTPQ------------EYVDEISAGFKELWKKLDISYDKFIR- 95 (648)
T ss_pred HHHHHHhcCCceEeecCCCCcchHHHH----HHHHcCCCHH------------HHHHHHHHHHHHHHHHcCCCCCCCee-
Confidence 589999999999999999999999754 4467798876 5789999999999999999999 555
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+|+.|.+.|+++|.+|+++|+||++.+.++|||.|+++|+|.++.
T Consensus 96 --Tt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~-------------------------------- 141 (648)
T PRK12267 96 --TTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV-------------------------------- 141 (648)
T ss_pred --CCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc--------------------------------
Confidence 9999999999999999999999999999999999999998665321
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
+
T Consensus 142 -----------------------------------------------------------------------------~-- 142 (648)
T PRK12267 142 -----------------------------------------------------------------------------D-- 142 (648)
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
.|+|++||++++++.++||||+++++++++++++++++..+
T Consensus 143 ---------------------------------------~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~ 183 (648)
T PRK12267 143 ---------------------------------------GGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFI 183 (648)
T ss_pred ---------------------------------------CCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCccc
Confidence 16799999999999999999999999999999998766567
Q ss_pred ecchhHHHHH-HHhhC-CCceeeeeec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEE
Q 003160 320 MPERFEKIYN-HWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 320 ~P~~~~~~~~-~~l~~-l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WF 396 (843)
.|+..++.+. +||++ ++|||||||+ .||+|||.+ +.+|+||||
T Consensus 184 ~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~----------------------------------~~~v~yVWf 229 (648)
T PRK12267 184 QPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFD----------------------------------PKHVVYVWI 229 (648)
T ss_pred CCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCC----------------------------------CCCEEEEcc
Confidence 8999999888 99986 9999999996 799999930 247999999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCccccc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 472 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS 472 (843)
||+++|++.+|||....++|++|||+|+|++|+||++| |++++++. +..||++|++|||++ .+|+|||||
T Consensus 230 DA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~-----~~~~p~~v~~hg~l~-~eg~KMSKS 303 (648)
T PRK12267 230 DALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMAL-----GLPLPKKVFAHGWWL-MKDGKMSKS 303 (648)
T ss_pred cchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhC-----CCCCCcEEEecceEE-ECCceeccc
Confidence 99999999999986544679999999999999999985 55544433 345779999999999 579999999
Q ss_pred CCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHhhc
Q 003160 473 LGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQ-NDISRWEILLAYK 548 (843)
Q Consensus 473 ~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~-~~~~~~~~~~~~~ 548 (843)
+||+|+|.+++++||+|++||||++..+ ++|.+|+++.+.. +++|++++||++.++...+... .. .
T Consensus 304 ~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~----------~ 373 (648)
T PRK12267 304 KGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDG----------E 373 (648)
T ss_pred CCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC----------c
Confidence 9999999999999999999999998877 9999999999976 7889999999987665433211 11 0
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC--ChHHHHHHHH
Q 003160 549 FDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE--YDSDAIIAQA 626 (843)
Q Consensus 549 ~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~--~~~~~~~~~~ 626 (843)
. + ....++..|+|++++++.+++++.++|++|+|++|++.+++|+ ..+|+|++..|||...++ +......+..
T Consensus 374 ~--p-~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~--~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~ 448 (648)
T PRK12267 374 I--P-APGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLI--SRANKYIDETAPWVLAKDEGKKERLATVMY 448 (648)
T ss_pred C--C-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHhCCChhhhcCcccHHHHHHHHH
Confidence 0 0 0123456799999999999999999999999999999999998 589999999999965542 2234556677
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 627 VLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 627 ~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
+++.++..+++||+|||||+||+||++|+..
T Consensus 449 ~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 449 HLAESLRKVAVLLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHcCCC
Confidence 8888999999999999999999999999853
No 36
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-76 Score=667.25 Aligned_cols=459 Identities=27% Similarity=0.421 Sum_probs=402.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+|++|+|++|+|+||+|||.++ .++|++|+ ++++++++.+++.++.|+|++| |.|
T Consensus 34 ~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A----~~~g~tP~------------el~d~~~~~~~~~~~~l~IsfD~F~r- 96 (558)
T COG0143 34 YARYLRLRGYEVFFLTGTDEHGTKIELKA----EKEGITPQ------------ELVDKNHEEFKELFKALNISFDNFIR- 96 (558)
T ss_pred HHHHHHhcCCeEEEEeccCCCCCHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCccccccc-
Confidence 58999999999999999999999976654 57899998 4678999999999999999999 888
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+|+.|.+.||++|.+|+++|+||.+..++.|||+|++.|.|.+|+
T Consensus 97 --Tt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-------------------------------- 142 (558)
T COG0143 97 --TTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-------------------------------- 142 (558)
T ss_pred --CCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee--------------------------------
Confidence 9999999999999999999999999999999999999999887664
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
|| ||.|+.++ ..|.
T Consensus 143 ---------------------------------------------g~-----cp~cg~~~----------------arGD 156 (558)
T COG0143 143 ---------------------------------------------GT-----CPKCGGED----------------ARGD 156 (558)
T ss_pred ---------------------------------------------cc-----CCCcCccc----------------cCcc
Confidence 33 77777663 7899
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
.|++||.. ..|.....|+|+.||..+|.+.+++|||+++++++++++++++++..+
T Consensus 157 ~Ce~Cg~~------------------------~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~ 212 (558)
T COG0143 157 QCENCGRT------------------------LDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFI 212 (558)
T ss_pred hhhhccCc------------------------CCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCcccc
Confidence 99999963 456666789999999999999999999999999999999999888788
Q ss_pred ecchhHHHHHHHhh-CCCceeeee-ecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 320 MPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 320 ~P~~~~~~~~~~l~-~l~DW~ISR-q~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
.|++.++.+.+||+ +|+|||||| ...||+|+| + . ...|+|||||
T Consensus 213 ~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-----~--~---------------------------p~kv~YVWfD 258 (558)
T COG0143 213 WPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVP-----G--D---------------------------PGKVIYVWFD 258 (558)
T ss_pred CChHHHHHHHHHHHccCcccceecCCCCCCccCC-----C--C---------------------------CCCEEEEeec
Confidence 99999999999996 599999999 899999999 2 0 2479999999
Q ss_pred cCcccccccCCCC--CChhhhhhcCCCc----EEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCC
Q 003160 398 SALWPFSTLGWPD--VSADDFKKFYPTT----MLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR 467 (843)
Q Consensus 398 S~l~~~~~~g~p~--~~~~~~~~~~P~d----~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~ 467 (843)
+.+.|++.++... ....+|++|||.| +|++||||++ ||++++++.+.. +| ++|++||+++ .+|+
T Consensus 259 AligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~----lP-~~i~ahg~l~-~~G~ 332 (558)
T COG0143 259 ALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLP----LP-TRIFAHGFLT-LEGQ 332 (558)
T ss_pred cHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCC----CC-CEEEeeeeEE-ECCc
Confidence 9999999998764 2347899999998 9999999998 599987766554 57 8999999998 8999
Q ss_pred cccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhc----CCCCCchhH
Q 003160 468 KMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQN----LPSQNDISR 540 (843)
Q Consensus 468 KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~----~~~~~~~~~ 540 (843)
|||||+||||+|.+++++||+|++||||+...+ ++|.+||++.+.. |..+.|+++|++++.++. +.+..+
T Consensus 333 KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp--- 409 (558)
T COG0143 333 KMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVP--- 409 (558)
T ss_pred cccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCC---
Confidence 999999999999999999999999999999999 9999999999988 889999999998776653 222221
Q ss_pred HHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCC-hH
Q 003160 541 WEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY-DS 619 (843)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~-~~ 619 (843)
......+ ..|+.++..+..+...+.++|++++|++|+..+++++ ..+|.||+..+||...+++ .+
T Consensus 410 -----------~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~--~~~N~Yi~~~~PW~l~k~~~~~ 475 (558)
T COG0143 410 -----------AAGAPDL-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALA--SRANKYIDEQAPWKLAKEDKRE 475 (558)
T ss_pred -----------ccccccc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHhhcCCCchhhccCcHH
Confidence 0000122 5789999999999999999999999999999999998 7899999999999766533 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 620 DAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 620 ~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
+..+...++.+++..++.||+||||..|++||++|+..
T Consensus 476 ~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 476 RLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 55566777778888999999999999999999999864
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-73 Score=664.40 Aligned_cols=434 Identities=26% Similarity=0.381 Sum_probs=374.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+|++|.|++|+|+||.|++ +.+++.|+++. ++++++++.++++|++||+.+| |.+
T Consensus 30 ~~R~~r~~G~~v~~v~g~dd~g~~i~----~~a~~~g~~~~------------~~~~~~~~~~~~~l~~l~I~~D~~~~- 92 (511)
T PRK11893 30 LARFKRLRGYDVFFLTGTDEHGQKIQ----RKAEEAGISPQ------------ELADRNSAAFKRLWEALNISYDDFIR- 92 (511)
T ss_pred HHHHHHhcCCcEEecCCCCCCChHHH----HHHHHcCCCHH------------HHHHHHHHHHHHHHHHhCCCcCCcee-
Confidence 57999999999999999999999965 34567788875 5778999999999999999988 444
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+++.|.+.|+++|.+|+++|+||++.++|+|||.|+|+|++.|+.
T Consensus 93 --t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~-------------------------------- 138 (511)
T PRK11893 93 --TTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI-------------------------------- 138 (511)
T ss_pred --CCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc--------------------------------
Confidence 9999999999999999999999999999999999999999776421
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
T Consensus 139 -------------------------------------------------------------------------------- 138 (511)
T PRK11893 139 -------------------------------------------------------------------------------- 138 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
++ .|+|+|||++++++.++|||++++.+++++.++++++...+
T Consensus 139 ---------------------------------~~----~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~ 181 (511)
T PRK11893 139 ---------------------------------ED----GYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFI 181 (511)
T ss_pred ---------------------------------CC----CCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCcc
Confidence 00 17899999999999999999999999999999998654456
Q ss_pred ecchhHHHHHHHhh-CCCceeeee-ecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 320 MPERFEKIYNHWLS-NIKDWCISR-QLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 320 ~P~~~~~~~~~~l~-~l~DW~ISR-q~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
.|+..++.+.+|++ +++|||||| |++||+|||.+ +.+|+|||||
T Consensus 182 ~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~----------------------------------~~~~~~vWfd 227 (511)
T PRK11893 182 QPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGD----------------------------------PKHVIYVWFD 227 (511)
T ss_pred CCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCC----------------------------------CCceEEEEec
Confidence 79999999999998 599999999 99999999931 2479999999
Q ss_pred cCcccccccCCCCCCh---hhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCC
Q 003160 398 SALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 474 (843)
Q Consensus 398 S~l~~~~~~g~p~~~~---~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~G 474 (843)
|+++|++..|||.+.. ++|.+|||.|++++|+||++||.....++..++..++| +.+++|||++ .+|+|||||+|
T Consensus 228 a~~~y~s~~~~p~~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~-~~G~KMSKS~G 305 (511)
T PRK11893 228 ALTNYLTALGYPDDEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLT-LDGEKMSKSLG 305 (511)
T ss_pred CcHHHHhHhccccccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEE-ECCeeecccCC
Confidence 9999999999987542 46999999999999999999988877666666655788 9999999999 59999999999
Q ss_pred CccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcC----CCCCchhHHHHHHhh
Q 003160 475 NVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNL----PSQNDISRWEILLAY 547 (843)
Q Consensus 475 NvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~----~~~~~~~~~~~~~~~ 547 (843)
|+|+|.|++++||+|++||||++.++ ++|++|+++.+.. +.+++++++|+..++...+ .+..+
T Consensus 306 N~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~---------- 375 (511)
T PRK11893 306 NVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVP---------- 375 (511)
T ss_pred cEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----------
Confidence 99999999999999999999999877 9999999999966 5678999999876543322 11111
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHH
Q 003160 548 KFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAV 627 (843)
Q Consensus 548 ~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~ 627 (843)
....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ +.+|+|++..+||...+++......+..+
T Consensus 376 ------~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~~pw~~~~~~~~~~~~~l~~ 447 (511)
T PRK11893 376 ------EPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV--RAANKYIDEQAPWSLAKTDPERLATVLYT 447 (511)
T ss_pred ------CCcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHhhCCChhhhcCCHHHHHHHHHH
Confidence 0112456799999999999999999999999999999999998 57999999999996654344456778889
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHhcc
Q 003160 628 LLYIFENILKLLHPFMPFVTEELWQSLRK 656 (843)
Q Consensus 628 l~~~l~~~l~LL~P~~P~iaEeiw~~L~~ 656 (843)
++.+++.+++||+|||||+||+||+.|+.
T Consensus 448 ~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 448 LLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 99999999999999999999999999985
No 38
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9.1e-73 Score=652.52 Aligned_cols=435 Identities=20% Similarity=0.327 Sum_probs=360.7
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|+|++|||+||+||+.. ++++|+++. ++++++++.+++++++||+++| +.+
T Consensus 98 iaR~~r~~G~~V~fv~G~DehG~kI~~~----A~~~g~~p~------------e~~~~~~~~~~~~~~~l~I~~D--~f~ 159 (616)
T PLN02224 98 IARFQRLLGKKVIFITGTDEHGEKIATS----AAANGRNPP------------EHCDIISQSYRTLWKDLDIAYD--KFI 159 (616)
T ss_pred HHHHHHhcCCceEEecCcCCcchHHHHH----HHHcCCChH------------HHHHHHHHHHHHHHHHcCCCCC--cCe
Confidence 5899999999999999999999997654 456788765 4667788889999999999666 556
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+||.|.+.||++|.+|+++|+||++.++++|||+|++.+.+.|+.
T Consensus 160 rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~--------------------------------- 206 (616)
T PLN02224 160 RTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELL--------------------------------- 206 (616)
T ss_pred eCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHc---------------------------------
Confidence 69999999999999999999999999999999999998776433220
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 207 -------------------------------------------------------------------------------- 206 (616)
T PLN02224 207 -------------------------------------------------------------------------------- 206 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
+ .+.|..||.|++++.+++|||+++++++.+.++++++.-.+.
T Consensus 207 --------------------------------~-----~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~ 249 (616)
T PLN02224 207 --------------------------------E-----NNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQ 249 (616)
T ss_pred --------------------------------C-----CCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccC
Confidence 0 034777899999999999999999999999999987665567
Q ss_pred cchhHHHHHHHhh-CCCceeeeeec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 321 PERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
|+..++.+.+||+ +|+||||||++ .||+|+|. + +.+|+|||||+
T Consensus 250 p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~-------~---------------------------~~~viYVWfDA 295 (616)
T PLN02224 250 PSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPD-------D---------------------------DKQTIYVWFDA 295 (616)
T ss_pred CHHHHHHHHHHHhcCCCCccccCCCCCCceECCC-------C---------------------------CCcEEEEehhh
Confidence 9988899999997 59999999986 79999992 0 34899999999
Q ss_pred CcccccccCCCCCC---hhhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccc
Q 003160 399 ALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 471 (843)
Q Consensus 399 ~l~~~~~~g~p~~~---~~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSK 471 (843)
.++|++.++++... ...|..|||.++|++|+||++| |++++++.++ .+| +++++|||+. .+|+||||
T Consensus 296 l~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~----~~P-~~i~~~g~l~-~eG~KMSK 369 (616)
T PLN02224 296 LLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGL----ELP-KMVFGHGFLT-KDGMKMGK 369 (616)
T ss_pred HHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCC----CCC-cEEEecccEe-cCCccccc
Confidence 99999988876432 0125668999999999999996 8887554432 456 9999999985 99999999
Q ss_pred cCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 003160 472 TLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYK 548 (843)
Q Consensus 472 S~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~ 548 (843)
|+||+|+|.+++++||+|++||||++.++ ++|.+|+++.+.. +++++|.++|++.+++........ ..
T Consensus 370 S~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~---------~~ 440 (616)
T PLN02224 370 SLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCE---------ST 440 (616)
T ss_pred cCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------Cc
Confidence 99999999999999999999999999888 9999999999865 778999999998776543211100 00
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCC---hHHHHHHH
Q 003160 549 FDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY---DSDAIIAQ 625 (843)
Q Consensus 549 ~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~---~~~~~~~~ 625 (843)
. + ........|+|++++++.+++++.++|++|+|++|++.+++|+ +.+|+|++..+||....++ ........
T Consensus 441 ~--~-~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~--~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l 515 (616)
T PLN02224 441 L--V-EDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIG--NAGNTYMDQRAPWFLFKQGGVSAEEAAKDL 515 (616)
T ss_pred C--C-CccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHHHHHhCCchhhhccccccHHHHHHHH
Confidence 0 0 0011234589999999999999999999999999999999997 8999999999999543322 12334566
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 626 AVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 626 ~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
.+++.++..+++||+|||||+||+||+.|+..
T Consensus 516 ~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~ 547 (616)
T PLN02224 516 VIILEVMRVIAVALSPIAPCLSLRIYSQLGYS 547 (616)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHhCCC
Confidence 78899999999999999999999999999853
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.4e-69 Score=588.57 Aligned_cols=307 Identities=35% Similarity=0.692 Sum_probs=282.0
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcC-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEG-IKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~ 79 (843)
++||+||+||+|+|++||||||+|||.++++.+...+ ..+.++++++|.+.|++|++++++.+.++|++||++.||++.
T Consensus 30 l~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~ 109 (338)
T cd00818 30 INRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENP 109 (338)
T ss_pred HHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCC
Confidence 4799999999999999999999999999887653222 345789999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
+.|+|++|.+.|+++|.+|+++|+||++.++|+|
T Consensus 110 ~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------------------------------------- 143 (338)
T cd00818 110 YKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------------------------------------- 143 (338)
T ss_pred eECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------------------------------------
Confidence 9999999999999999999999999999988866
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
T Consensus 144 -------------------------------------------------------------------------------- 143 (338)
T cd00818 144 -------------------------------------------------------------------------------- 143 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
|+++++++||||+++++++++++++++ ++|
T Consensus 144 ------------------------------------------------~v~~~~~~qwf~~l~~~~~~l~~~~~~--~~~ 173 (338)
T cd00818 144 ------------------------------------------------PLIYRATPQWFIRVTKIKDRLLEANDK--VNW 173 (338)
T ss_pred ------------------------------------------------EEEEEecCeEEEEcHHHHHHHHHHHhc--CcE
Confidence 567888999999999999999999975 678
Q ss_pred ecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160 320 MPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 399 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~ 399 (843)
+|+..++.+.+||++++|||||||++||+|||+|+|++ ++.+. +.++++|+||||||+
T Consensus 174 ~P~~~~~~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~-~~~~~---------------------~~~~~~v~~vWfda~ 231 (338)
T cd00818 174 IPEWVKNRFGNWLENRRDWCISRQRYWGTPIPVWYCED-CGEVL---------------------VRRVPDVLDVWFDSG 231 (338)
T ss_pred ECHHHHHHHHHHHhcchhcceeeecccCceeeEEEecC-CCeEE---------------------EecCCceEEEEEeCC
Confidence 99999999999999999999999999999999999864 22222 246789999999999
Q ss_pred cccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccCh
Q 003160 400 LWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDP 479 (843)
Q Consensus 400 l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p 479 (843)
++|++.++||.++ ++|++|||+|++++|+||+++|+.++++.++.+.+..||+++++||++++.+|+|||||+||+|+|
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn~i~~ 310 (338)
T cd00818 232 SMPYAQLHYPFEN-EDFEELFPADFILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNYVDP 310 (338)
T ss_pred CCHHHHcCCCCcc-hhhhccCCCeEEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCCCCCCCCCCCcCCH
Confidence 9999999999766 689999999999999999999999999999888889999999999999989999999999999999
Q ss_pred hhHHHhhChhHHHHHHHhCCc-cccccc
Q 003160 480 IDTIKEFGADALRFTISLGTA-GQDLSL 506 (843)
Q Consensus 480 ~dii~~yGaDalR~~l~~~~~-~~D~~f 506 (843)
.+++++||+|++||||++.++ ++|++|
T Consensus 311 ~~~~~~~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 311 QEVVDKYGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHHcCcHHHHHHHHhCCCccCCCCC
Confidence 999999999999999999887 999876
No 40
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-64 Score=523.76 Aligned_cols=440 Identities=23% Similarity=0.384 Sum_probs=369.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
|+||+|++|..|.|.+|||+||+.||.++ ...|.+|.+ .++...+.+.+.++..||+++ |-|
T Consensus 68 i~R~q~lkg~~v~fsTGTDEHGlKIqtaa----atnG~~P~e------------~cDr~s~~f~qL~k~~gi~yt~FIR- 130 (578)
T KOG0436|consen 68 IARFQRLKGKKVIFSTGTDEHGLKIQTAA----ATNGRNPPE------------LCDRISQSFRQLWKDAGIAYTKFIR- 130 (578)
T ss_pred HHHHHhhcCCceEeecCCCccchhhhhhH----hhcCCChHH------------HHhhhhHHHHHHHHHhCcchhheee-
Confidence 58999999999999999999999988765 457888874 557788888999999999998 888
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+||.|...||+++..+..+|+||+|.+...||.+|+|...+.+|...
T Consensus 131 --TTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~------------------------------ 178 (578)
T KOG0436|consen 131 --TTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKN------------------------------ 178 (578)
T ss_pred --cCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcC------------------------------
Confidence 999999999999999999999999999999999999999876655210
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
|- ..|
T Consensus 179 -------------------------p~-------------------------------------------------~~g- 183 (578)
T KOG0436|consen 179 -------------------------PC-------------------------------------------------PPG- 183 (578)
T ss_pred -------------------------CC-------------------------------------------------CCC-
Confidence 00 011
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
+ +++-.||+||.++.+++|||+++++++++.++++.|+-.+
T Consensus 184 ------k---------------------------------~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fv 224 (578)
T KOG0436|consen 184 ------K---------------------------------VVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFV 224 (578)
T ss_pred ------c---------------------------------eeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCcc
Confidence 1 2233589999999999999999999999999999999899
Q ss_pred ecchhHHHHHHHhh-CCCceeeee--e-cccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEE
Q 003160 320 MPERFEKIYNHWLS-NIKDWCISR--Q-LWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTW 395 (843)
Q Consensus 320 ~P~~~~~~~~~~l~-~l~DW~ISR--q-~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~W 395 (843)
.|+...+....||+ +++|.+||| + +.||+|+| + + +.+++|||
T Consensus 225 qPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP-----~--d---------------------------dsQtIYVW 270 (578)
T KOG0436|consen 225 QPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVP-----G--D---------------------------DSQTIYVW 270 (578)
T ss_pred CchHHHHHHHHHHHcCCCcccccChhhhcccCCCCC-----C--C---------------------------CcceEEEe
Confidence 99999999999996 799999999 3 79999999 2 1 45799999
Q ss_pred EecCcccccccCCCCCC---hhhhhhcCCCcEEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCc
Q 003160 396 FSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRK 468 (843)
Q Consensus 396 FdS~l~~~~~~g~p~~~---~~~~~~~~P~d~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~K 468 (843)
||+.+.|++.+|+|.+. +..+.-+||+.+|++|+||++ ||++++|+.|+. +| +.|++|||++ .+|.|
T Consensus 271 fDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlp----lP-~~I~vHghwt-~ngmK 344 (578)
T KOG0436|consen 271 FDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLP----LP-KMIFVHGHWT-KNGMK 344 (578)
T ss_pred HHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCC----Cc-cEEEEeeeee-eccee
Confidence 99999999999999632 457888999999999999998 599999988875 36 9999999998 99999
Q ss_pred ccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhc---CCCCCchhHHH
Q 003160 469 MSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQN---LPSQNDISRWE 542 (843)
Q Consensus 469 MSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~---~~~~~~~~~~~ 542 (843)
||||+||||||.+++++||+|++||||+..+. +.|.+|+++++.. +..+.++++|+++++.+. +.+... .
T Consensus 345 MsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~--~-- 420 (578)
T KOG0436|consen 345 MSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCES--T-- 420 (578)
T ss_pred cchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhcccc--c--
Confidence 99999999999999999999999999999888 9999999999987 678999999999888762 111000 0
Q ss_pred HHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---
Q 003160 543 ILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS--- 619 (843)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~--- 619 (843)
+. .+.......+.-+.+.++.+.+.+.+.|++|.+..|++++.+.+ ...|.|++..+||....+...
T Consensus 421 -l~-------~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~--n~~ntlvq~~aPWkl~~dsq~~~~ 490 (578)
T KOG0436|consen 421 -LV-------VDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIG--NAGNTLVQQRAPWKLFKDSQVSAE 490 (578)
T ss_pred -cc-------cCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHH--HhhhhhhhhcCCceeccccCccHH
Confidence 00 00001123455688899999999999999999999999999987 578999999999965542222
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 620 DAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 620 ~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
........++.||+.+.+||+|+||-++.+++++|+-.
T Consensus 491 ~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 491 ELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 33334455667888899999999999999999999865
No 41
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2e-58 Score=502.56 Aligned_cols=283 Identities=39% Similarity=0.729 Sum_probs=259.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|||.++++.+ +.......+++|.+.|++|++++.+.|+++|++||+++||++.|
T Consensus 29 i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~ 105 (312)
T cd00668 29 IARYKRMRGYEVPFLPGWDTHGLPIELKAERKG---GRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEY 105 (312)
T ss_pred HHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhc---CcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCe
Confidence 579999999999999999999999988887654 33444455899999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|.+.|+++|.+|+++|+||++.++|
T Consensus 106 ~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------------------------------- 136 (312)
T cd00668 106 ITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------------------------------- 136 (312)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCEEeeccee-------------------------------------------------
Confidence 9999999999999999999999999987543
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 137 -------------------------------------------------------------------------------- 136 (312)
T cd00668 137 -------------------------------------------------------------------------------- 136 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
+.++|||++++++++++++++++++ +.
T Consensus 137 ---------------------------------------------------~~~~~~f~~~~~l~~~~~~~~~~~~--~~ 163 (312)
T cd00668 137 ---------------------------------------------------RITEQWFFDMPKFKEKLLKALRRGK--IV 163 (312)
T ss_pred ---------------------------------------------------EeeeeEEEEcHHHHHHHHHHHhcCC--cC
Confidence 4567999999999999999998654 89
Q ss_pred cchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecCc
Q 003160 321 PERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSAL 400 (843)
Q Consensus 321 P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~l 400 (843)
|+..++.+.+||++..|||||||++||+|+| ++|+||||||++
T Consensus 164 p~~~~~~~~~~l~~~~d~~isR~~~WG~~~P-------------------------------------~~~i~~Wfds~~ 206 (312)
T cd00668 164 PEHVKNRMEAWLESLLDWAISRQRYWGTPLP-------------------------------------EDVFDVWFDSGI 206 (312)
T ss_pred ChHHHHHHHHHHhCCCCeEEeccCCCCCcCC-------------------------------------cccccchhhccH
Confidence 9999999999999988999999999999999 279999999999
Q ss_pred ccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChh
Q 003160 401 WPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI 480 (843)
Q Consensus 401 ~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~ 480 (843)
+|+++++|+... ++|+++||.|++++|+||+++|+..+++++.++.+..||+++++||++++.+|+|||||+||+|+|.
T Consensus 207 ~~~~~~~~~~~~-~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~ 285 (312)
T cd00668 207 GPLGSLGYPEEK-EWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPS 285 (312)
T ss_pred HHHHHcCCCccc-hhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHH
Confidence 999999998765 6799999999999999999999999999998887777889999999999888899999999999999
Q ss_pred hHHHhhChhHHHHHHHhCCc-cccccc
Q 003160 481 DTIKEFGADALRFTISLGTA-GQDLSL 506 (843)
Q Consensus 481 dii~~yGaDalR~~l~~~~~-~~D~~f 506 (843)
+++++||+|++||||++.++ ++|.+|
T Consensus 286 d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 286 DVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 99999999999999999887 999876
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.3e-59 Score=518.26 Aligned_cols=346 Identities=30% Similarity=0.513 Sum_probs=279.0
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+|++|+|++|+|+||++++.+ +.+.|++|+ ++++++++.+++.|+++||++| |.|
T Consensus 28 ~aR~~r~~G~~v~~~tGtDehG~~i~~~----A~~~g~~p~------------~~~~~~~~~~~~~~~~~~I~~D~F~r- 90 (391)
T PF09334_consen 28 LARYLRLRGHDVLFVTGTDEHGSKIETA----AEKQGIDPE------------EFCDKYSAKFKELLEALNISYDRFIR- 90 (391)
T ss_dssp HHHHHHHTT-EEEEEEEEE-SSHHHHHH----HHHTTS-HH------------HHHHHHHHHHHHHHHHTT---SEEEE-
T ss_pred HHHHHhhcccceeeEEecchhhHHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHcCCCCcceeC-
Confidence 4899999999999999999999996554 457799887 5789999999999999999999 887
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+|+.|.++|+++|.+|+++|+||+++..+.||+.|++.|+|.+|+
T Consensus 91 --Tt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~-------------------------------- 136 (391)
T PF09334_consen 91 --TTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE-------------------------------- 136 (391)
T ss_dssp --TTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET--------------------------------
T ss_pred --CCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee--------------------------------
Confidence 9999999999999999999999999999999999999999888764
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
| .||.|+.. ...|.
T Consensus 137 ---------------------------------------------g-----~CP~C~~~----------------~a~g~ 150 (391)
T PF09334_consen 137 ---------------------------------------------G-----TCPYCGSD----------------KARGD 150 (391)
T ss_dssp ---------------------------------------------C-----EETTT--S----------------SCTTT
T ss_pred ---------------------------------------------c-----cccCcCcc----------------ccCCC
Confidence 2 26766644 37899
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
.|++||.. .++.+...|+|..||++++.+.++||||+++++++.+.+++++++..
T Consensus 151 ~Ce~cG~~------------------------~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~- 205 (391)
T PF09334_consen 151 QCENCGRP------------------------LEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDF- 205 (391)
T ss_dssp EETTTSSB------------------------EECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTS-
T ss_pred cccCCCCC------------------------cccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCC-
Confidence 99999863 56677888999999999999999999999999999999999876533
Q ss_pred ecchhHHHHHHHhhC-CCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 320 MPERFEKIYNHWLSN-IKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 320 ~P~~~~~~~~~~l~~-l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
.|+..++...+||++ ++||||||...||+|+| + .+..|++||||+
T Consensus 206 ~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP-----~-----------------------------~~~~~iyVWfda 251 (391)
T PF09334_consen 206 PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP-----G-----------------------------DPGQVIYVWFDA 251 (391)
T ss_dssp SHHHHHHHHHHHHHT----EE-ECTTSSSEEET-----T-----------------------------EEEEEE-HHHHH
T ss_pred CChhHHHHHHHHhhcccCceeeecCCCCcceee-----c-----------------------------cCCceEEEcchH
Confidence 677788888999975 99999999999999999 1 134799999999
Q ss_pred CcccccccCCCC---CChhhhhhcCC-----CcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCC
Q 003160 399 ALWPFSTLGWPD---VSADDFKKFYP-----TTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG 466 (843)
Q Consensus 399 ~l~~~~~~g~p~---~~~~~~~~~~P-----~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G 466 (843)
.+.|++.++++. ...++|++||+ ..+++.|+||++| |++++++.++ .+| +++++|||++ .+|
T Consensus 252 l~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~----~lP-~~i~~~~~~~-~~g 325 (391)
T PF09334_consen 252 LIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGL----PLP-RRIVVHGFLT-LDG 325 (391)
T ss_dssp HTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB--------SEEEEE--EE-ETT
T ss_pred HHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccC----CCC-CEEEeeeeEE-ECC
Confidence 999999988765 22378899993 2399999999986 6766555333 356 8999999998 899
Q ss_pred CcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHH
Q 003160 467 RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFI 528 (843)
Q Consensus 467 ~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~ 528 (843)
+|||||+||+|+|.+++++||+|++||||++.++ ++|.+|+++.+.. +..++|+++|+++++
T Consensus 326 ~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 326 EKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp CCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred eeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 9999999999999999999999999999999888 9999999999977 677999999988765
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1e-52 Score=458.10 Aligned_cols=281 Identities=29% Similarity=0.470 Sum_probs=245.4
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|++++|||+||+||+.++ +++|++++ ++++.+.+.+++++++||+++| ..+
T Consensus 29 ~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a----~~~g~~~~------------e~~~~~~~~~~~~l~~LgI~~D--~~~ 90 (319)
T cd00814 29 FARYQRLRGYDVLFVTGTDEHGTKIEQKA----EEEGVTPQ------------ELCDKYHEIFKDLFKWLNISFD--YFI 90 (319)
T ss_pred HHHHHHhCCCcccccCccCCCCcHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHcCCcCC--CCe
Confidence 57999999999999999999999986655 45688775 5778999999999999999888 233
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|...|+++|.+|+++|+||++...+.|||.|+++|+
T Consensus 91 ~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~-------------------------------------- 132 (319)
T cd00814 91 RTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP-------------------------------------- 132 (319)
T ss_pred eCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee--------------------------------------
Confidence 489999999999999999999999999999999999987761
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 133 -------------------------------------------------------------------------------- 132 (319)
T cd00814 133 -------------------------------------------------------------------------------- 132 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
+++.++||||+++++++.++++++++...+.
T Consensus 133 -------------------------------------------------e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~ 163 (319)
T cd00814 133 -------------------------------------------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFIW 163 (319)
T ss_pred -------------------------------------------------EEEeeeeEEEEhHHHHHHHHHHHHhCCccCC
Confidence 4677899999999999999999988776689
Q ss_pred cchhHHHHHHHhhC-CCceeeeeec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 321 PERFEKIYNHWLSN-IKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 321 P~~~~~~~~~~l~~-l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
|+..++.+.+||++ ++|||||||. +||+|+|. -+.+|+||||||
T Consensus 164 p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~----------------------------------~~~~~~yvWfda 209 (319)
T cd00814 164 PENARNEVLSWLKEGLKDLSITRDLFDWGIPVPL----------------------------------DPGKVIYVWFDA 209 (319)
T ss_pred CHHHHHHHHHHHhCCCcccCCCccCcccCeeCCC----------------------------------CCCcEEEEehhh
Confidence 99999999999986 9999999999 99999993 024799999999
Q ss_pred CcccccccCCCCCCh---hhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccc
Q 003160 399 ALWPFSTLGWPDVSA---DDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSK 471 (843)
Q Consensus 399 ~l~~~~~~g~p~~~~---~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSK 471 (843)
.++|++..+++.... ..|...+|.+++++|+||++| |++.++++ +..|++.+++|||++ .+|+||||
T Consensus 210 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~-----~~~~~~~~~~~~~~~-~~g~kmSk 283 (319)
T cd00814 210 LIGYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGA-----GLPLPTRIVAHGYLT-VEGKKMSK 283 (319)
T ss_pred HHHHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhC-----CCCCCcEeeeeeeEE-ECCeeecc
Confidence 999999888875431 246678899999999999996 56543332 245569999999998 67999999
Q ss_pred cCCCccChhhHHHhhChhHHHHHHHhCCc-cccccc
Q 003160 472 TLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSL 506 (843)
Q Consensus 472 S~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f 506 (843)
|+||+|+|.+++++||+|++||||++.++ ++|.+|
T Consensus 284 S~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 284 SRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred cCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999999999988 999987
No 44
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-51 Score=423.82 Aligned_cols=461 Identities=19% Similarity=0.277 Sum_probs=367.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
+|||.+.+|++.++++|||+.|.+||.++ .++|.+|++| +++++...+.-+..++|++| +.|
T Consensus 44 ~Aryc~~r~~~~~yicGTDEYgtatetka----leeg~tP~el------------cdKyh~ihk~vy~Wf~IdfD~fgr- 106 (567)
T KOG1247|consen 44 FARYCPLRGPNTLYICGTDEYGTATETKA----LEEGLTPQEL------------CDKYHGIHKVVYDWFKIDFDEFGR- 106 (567)
T ss_pred hcccccCCCCceEEeccccccchhhHHHH----HHccCCHHHH------------HHhcchhHHHHHHhhcccccccCc-
Confidence 58999999999999999999999986653 4789999964 47899999999999999999 777
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+.+...+.+|.+|.+||++|+.-...-.+.+|+.|++.|+|..|+
T Consensus 107 --tTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve-------------------------------- 152 (567)
T KOG1247|consen 107 --TTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE-------------------------------- 152 (567)
T ss_pred --ccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh--------------------------------
Confidence 9999999999999999999999999999999999999999887664
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
|+ ||.|+.+| ..|.
T Consensus 153 ---------------------------------------------g~-----cp~C~yd~----------------ARGD 166 (567)
T KOG1247|consen 153 ---------------------------------------------GK-----CPFCGYDD----------------ARGD 166 (567)
T ss_pred ---------------------------------------------cc-----CCCCCCcc----------------ccch
Confidence 22 88888885 8899
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCee-
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT- 318 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~- 318 (843)
+|++||.. ....+...|.|..|....+++.+.+.||.++++++++.++++...+.
T Consensus 167 qcd~cG~l------------------------~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~ 222 (567)
T KOG1247|consen 167 QCDKCGKL------------------------VNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEG 222 (567)
T ss_pred hhhhhhhh------------------------cCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccC
Confidence 99999974 23345677999999999999999999999999999999999753311
Q ss_pred EecchhHHHHHHHhh-CCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEe
Q 003160 319 IMPERFEKIYNHWLS-NIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFS 397 (843)
Q Consensus 319 ~~P~~~~~~~~~~l~-~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFd 397 (843)
-+..+..+..++||. ++++.||||++-||+|+|. ++| ...|+|||||
T Consensus 223 ~WS~Na~~it~sWlk~gl~pRCiTRDLkWGtpVPl-------e~f-------------------------k~KVfYVWFD 270 (567)
T KOG1247|consen 223 DWSQNAQNITRSWLKDGLKPRCITRDLKWGTPVPL-------EKF-------------------------KDKVFYVWFD 270 (567)
T ss_pred CCccchHHHHHHHHHccccccccccccccCCCcCh-------hhh-------------------------cccEEEEEEc
Confidence 134456788899995 7999999999999999993 111 3479999999
Q ss_pred cCcccccccCCCCCChhhhhhcCCCc-----EEEEeehhhhhHHHHHHHHHhHhhCCCCc-eEEEEeeeEECCCCCcccc
Q 003160 398 SALWPFSTLGWPDVSADDFKKFYPTT-----MLETGHDILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSK 471 (843)
Q Consensus 398 S~l~~~~~~g~p~~~~~~~~~~~P~d-----~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSK 471 (843)
+.+.|++.+.- - .++|++||... +++.|+|++.||-..+-.+.+....+.+. +++-...++ ..+..|+||
T Consensus 271 A~IGYlsit~~--y-t~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~v~~l~aTeYL-nyE~gKFSK 346 (567)
T KOG1247|consen 271 APIGYLSITKN--Y-TDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTVVHHLSATEYL-NYEDGKFSK 346 (567)
T ss_pred CcceEEEeehh--h-hHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchhheeechhhhh-ccccCcccc
Confidence 99999885431 1 27899999543 56789999998755443333333334442 233344444 367779999
Q ss_pred cCCCccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcC----CCCCchhHHHH
Q 003160 472 TLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNL----PSQNDISRWEI 543 (843)
Q Consensus 472 S~GNvI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~----~~~~~~~~~~~ 543 (843)
|+|.+|...++.+. .++|..||||++..| ++|..|||+.+.. +++++|.|+|++++++... .+..+
T Consensus 347 SrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~Vp------ 420 (567)
T KOG1247|consen 347 SRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVVP------ 420 (567)
T ss_pred cccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCccc------
Confidence 99999999998874 899999999999999 9999999999986 8899999999887665533 22221
Q ss_pred HHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHH
Q 003160 544 LLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAII 623 (843)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~ 623 (843)
.-.+..-|+-+++.++.+..++.++||.-++++|++.+++.. ...|.||+..+.+.....+.+....
T Consensus 421 -----------~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is--~~GNqylQ~~~~~k~~~~~r~r~~~ 487 (567)
T KOG1247|consen 421 -----------EMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS--RRGNQYLQENTDNKLYEESRQRAGT 487 (567)
T ss_pred -----------ceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHhcccccchhhhcccccce
Confidence 112334488999999999999999999999999999999986 7899999988754222212222233
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 624 AQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 624 ~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
...+...++..+..||+||||-++.+|..+|+..
T Consensus 488 vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnlp 521 (567)
T KOG1247|consen 488 VIGLAANIIYLVSVLLYPYMPTTSAEILKQLNLP 521 (567)
T ss_pred eeehhhHHHHHHHHHhccccccchHHHHHHhCCc
Confidence 3445556666778999999999999999999754
No 45
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-48 Score=424.18 Aligned_cols=269 Identities=29% Similarity=0.482 Sum_probs=227.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+|++|++++|+|+||+|++..+ ++.|.+ |.+|++++.+.+++++++||+++||.+.+
T Consensus 29 ~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a----~~~g~~------------~~e~~~~~~~~~~~~~~~lgi~~d~~~~~ 92 (314)
T cd00812 29 IARYKRMQGYNVLFPMGFDAFGLPAENAA----IKIGRD------------PEDWTEYNIKKMKEQLKRMGFSYDWRREF 92 (314)
T ss_pred HHHHHHHcCCCcCCCCCcCCCCCHHHHHH----HHcCCC------------HHHHHHHHHHHHHHHHHHhccceeccccc
Confidence 57999999999999999999999976554 445764 44799999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+||.|.++|+++|.+|+++|+||++.++|+||
T Consensus 93 ~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~---------------------------------------------- 126 (314)
T cd00812 93 TTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC---------------------------------------------- 126 (314)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee----------------------------------------------
Confidence 9999999999999999999999999999999886
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 127 -------------------------------------------------------------------------------- 126 (314)
T cd00812 127 -------------------------------------------------------------------------------- 126 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEec--chHHHHHHHHHHcCCee
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTM--EPLAEKALHAVEKGELT 318 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~--~~~~~~~~~~~~~~~~~ 318 (843)
+.++||||++ +++++++.++++++ .
T Consensus 127 ---------------------------------------------------~~~~~~f~~l~~~~~~~~l~~~l~~~--~ 153 (314)
T cd00812 127 ---------------------------------------------------KLLDQWFLKYSETEWKEKLLKDLEKL--D 153 (314)
T ss_pred ---------------------------------------------------CccceEEEEcCcHHHHHHHHHHHHhc--C
Confidence 2357999999 99999999999864 4
Q ss_pred EecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 319 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 319 ~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
+.|+..++.+.+|++ ||||+.||+|+|+ .+|+|+||||
T Consensus 154 ~~p~~~~~~~~~~l~------isR~~~wGipvP~------------------------------------~~~i~~w~ds 191 (314)
T cd00812 154 GWPEEVRAMQENWIG------CSRQRYWGTPIPW------------------------------------TDTMESLSDS 191 (314)
T ss_pred cCCHHHHHHHHHHhe------eeeecCCcCCcCc------------------------------------cccccccccc
Confidence 699999999999997 9999999999993 2699999999
Q ss_pred Cc---ccccccCCCCC-------ChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHh--hC---CCCceEEEEeeeEEC
Q 003160 399 AL---WPFSTLGWPDV-------SADDFKKFYPTTMLETGHDILFFWVARMVMMGIEF--TG---SVPFSHVYLHGLIRD 463 (843)
Q Consensus 399 ~l---~~~~~~g~p~~-------~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~--~~---~~Pf~~v~~hg~v~d 463 (843)
.+ +|.+....... .+++|++|||.|++++|+||++||....++....+ .| ..|++++.+||+|+
T Consensus 192 ~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~- 270 (314)
T cd00812 192 TWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL- 270 (314)
T ss_pred HHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-
Confidence 86 33333322111 23579999999999999999988854333333332 22 13558999999998
Q ss_pred CCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCcccccccCH
Q 003160 464 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSI 508 (843)
Q Consensus 464 ~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~~~D~~f~~ 508 (843)
.+|+|||||+||+|+|.|++++||+|++||||++.++ .|.+|++
T Consensus 271 ~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~~~f~~ 314 (314)
T cd00812 271 LEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PDADFDW 314 (314)
T ss_pred cCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cCCCCCC
Confidence 7999999999999999999999999999999999888 7777764
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.8e-33 Score=316.55 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=141.5
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
|.|+|.+|.|++|.|+.++++.+.+++| .||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++||+++++.+
T Consensus 220 ~~Dih~gG~DlifpHh~neiaqs~a~~g-~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~ 298 (463)
T PRK00260 220 TFDIHGGGADLIFPHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHY 298 (463)
T ss_pred CcceecCccccCCCchHhHHHHHHHhcC-CCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCC
Confidence 6799999999999999999999999888 799999999888889999999999999999999999999999999998767
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++|+++.+...+++++++||+++++.. ...|+|+.++++.++.++.++|
T Consensus 299 ~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~----------------------------~~~d~~~~~~l~~~~~~~~~al 350 (463)
T PRK00260 299 RSPLNFSEEALEQAKKALERLYNALAETAL----------------------------GEDDEALLAELEEFKERFIEAM 350 (463)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHhhh----------------------------ccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987641 1146788999999999999999
Q ss_pred h-cCChHHHHHHHHHHHHHhhhHHHHHh
Q 003160 581 D-KYFFGDVGRETYDFFWSDFADWYIEA 607 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~~~~~~~~Yle~ 607 (843)
+ +|+++.|+..+++|+ ...|.|++.
T Consensus 351 ~ddln~~~Al~~l~~lv--~~~n~~~~~ 376 (463)
T PRK00260 351 DDDFNTPEALAVLFELA--REINRALET 376 (463)
T ss_pred HhcccHHHHHHHHHHHH--HHHHHHhhc
Confidence 5 999999999999997 456778753
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.97 E-value=1.8e-30 Score=303.20 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=155.0
Q ss_pred EEecCcccccccCCCCCC---hhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe-eeEECCCCCccc
Q 003160 395 WFSSALWPFSTLGWPDVS---ADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMS 470 (843)
Q Consensus 395 WFdS~l~~~~~~g~p~~~---~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMS 470 (843)
|+ |. |-...-||+-+. ..+.-. .|.|+|..|.|++|.+.-..++.+.+++|+.||.++++| |||. .+|+|||
T Consensus 242 W~-Sp-wG~GrPGWHiECsam~~~~lg-~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~-i~G~KMS 317 (651)
T PTZ00399 242 WD-SP-WGKGRPGWHIECSAMASNILG-DPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLH-IKGLKMS 317 (651)
T ss_pred CC-CC-CCCCCCCchHHHHHHHHHHcC-CcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEE-eccchhh
Confidence 65 33 333455676543 112111 389999999999999999999999999999899999999 9976 9999999
Q ss_pred ccCCCccChhhHHHhhChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccc
Q 003160 471 KTLGNVIDPIDTIKEFGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFD 550 (843)
Q Consensus 471 KS~GNvI~p~dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~ 550 (843)
||+||+|+|.+++++||+|++||||++..+++|++||++.+....+..++++|.+..+...+.....
T Consensus 318 KSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~------------- 384 (651)
T PTZ00399 318 KSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESEL------------- 384 (651)
T ss_pred hcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------
Confidence 9999999999999999999999999988669999999999999888888888887666543321110
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHhhhHHHHH
Q 003160 551 EEECLCKAPLPECWVVSKLHMLIDTVTASY-DKYFFGDVGRETYDFFWSDFADWYIE 606 (843)
Q Consensus 551 ~~~~~~~~~~~d~~il~~l~~~~~~v~~~~-e~~~f~~a~~~i~~f~~~~~~~~Yle 606 (843)
. ....+...|+|++..++.+...+.++| ++|+++.|+..+++|+ ..+|.|++
T Consensus 385 -~-~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv--~~~N~yi~ 437 (651)
T PTZ00399 385 -T-SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLN 437 (651)
T ss_pred -c-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HHHHHHHh
Confidence 0 001234578999999999999999999 7899999999999998 57899996
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.96 E-value=9.3e-29 Score=280.62 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=123.4
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
|.|+|..|.|++|.|....++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++..+
T Consensus 219 ~~Dih~gG~Dl~fpHhene~aqs~a~~g~-~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~ 297 (465)
T TIGR00435 219 QIDIHGGGVDLIFPHHENEIAQSEAAFGK-QLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHY 297 (465)
T ss_pred CceeeccccccccchHHHHHHHHHHhcCC-CCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCC
Confidence 57899999999999999999999998885 66788888766679999999999999999999999999999999998777
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++|+++.+...++.+++|||+++++......... ..... ......+...+.++|
T Consensus 298 ~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~----------------~~~~~-------~~~~~~~~~~f~~al 354 (465)
T TIGR00435 298 RSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGN----------------QSLNK-------FPDEKEFEARFVEAM 354 (465)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc----------------ccccc-------chhHHHHHHHHHHHH
Confidence 9999999999999999999999999887543211000 00000 011223456666677
Q ss_pred h-cCChHHHHHHHHHHH
Q 003160 581 D-KYFFGDVGRETYDFF 596 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~ 596 (843)
+ ++++..|+..+++++
T Consensus 355 ~dDlnt~~a~~~l~~~~ 371 (465)
T TIGR00435 355 DDDLNTANALAVLFELA 371 (465)
T ss_pred hhccCHHHHHHHHHHHH
Confidence 4 799999999999998
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.95 E-value=2e-27 Score=259.56 Aligned_cols=147 Identities=19% Similarity=0.127 Sum_probs=123.5
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChh--HHHHHHHhC
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGAD--ALRFTISLG 498 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaD--alR~~l~~~ 498 (843)
|.|+|..|.|++|.|....++.+.+++|+.||.++++||.+++.+|+|||||+||+|+|.+++ ++|+| ++|||++++
T Consensus 214 ~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell-~~G~d~~~lR~~lls~ 292 (384)
T PRK12418 214 GFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLR-AAGVDPAAIRLALLAG 292 (384)
T ss_pred CcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHH-hccCChhheeEEEecc
Confidence 468999999999999999999999999998999999999999999999999999999999976 45555 999999977
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHH
Q 003160 499 TAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTA 578 (843)
Q Consensus 499 ~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~ 578 (843)
.+.++++|+++.+...++.+++++|++... . . . .+..+.+.+.+
T Consensus 293 ~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~----~---~---------------------~--------~~~~~~~~f~~ 336 (384)
T PRK12418 293 HYRADREWTDAVLAEAEARLARWRAAAALP----A---G---------------------P--------DAADVVARVRA 336 (384)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHhcc----c---c---------------------c--------hHHHHHHHHHH
Confidence 779999999999999999999998876321 0 0 0 12234567777
Q ss_pred Hhh-cCChHHHHHHHHHHHHHhhhHHHHH
Q 003160 579 SYD-KYFFGDVGRETYDFFWSDFADWYIE 606 (843)
Q Consensus 579 ~~e-~~~f~~a~~~i~~f~~~~~~~~Yle 606 (843)
+|+ ++++..|+..+++++ ...|.|+.
T Consensus 337 al~dDlnt~~a~~~l~~~~--~~~n~~~~ 363 (384)
T PRK12418 337 ALADDLDTPGALAAVDGWA--TDALEGGG 363 (384)
T ss_pred HHHhcCChHHHHHHHHHHH--HHHHhccC
Confidence 775 699999999999998 45777753
No 50
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=4.7e-26 Score=255.89 Aligned_cols=164 Identities=16% Similarity=0.106 Sum_probs=123.9
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
.|+|..|.|++|+|.-..++++.+++|+ ||.++++|+.++..+|+|||||+||+|++.+++++ |+++++||++++..+
T Consensus 234 ~DIH~GG~DliFPHHeneiAqs~a~~g~-~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~y 312 (490)
T PRK14536 234 CDIHIGGVDHIRVHHTNEIAQCEAATGK-PWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHY 312 (490)
T ss_pred eeEEeccccCCCcchhhHHHHHHHhcCC-CcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCC
Confidence 4899999999999999999999888886 88899999988889999999999999999999998 999999999999888
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++|+++.+....+-+.+|.|++..+........... .+. ...... ...+.-....+..+...+.++|
T Consensus 313 r~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~-~~~~~~~~~~~~~~~~~f~~al 382 (490)
T PRK14536 313 RSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSV-------RGT--LAECAA-ERVAESRASESELLLTDFRAAL 382 (490)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------ccc--cccccc-ccccchhhhhHHHHHHHHHHHH
Confidence 999999999999988888888887655432111000000 000 000000 0000001123455667788888
Q ss_pred h-cCChHHHHHHHHHHH
Q 003160 581 D-KYFFGDVGRETYDFF 596 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~ 596 (843)
+ ++++..|+..+++++
T Consensus 383 ~dDlntp~Al~~l~~~~ 399 (490)
T PRK14536 383 EDDFSTPKALSELQKLV 399 (490)
T ss_pred HhcCChHHHHHHHHHHH
Confidence 5 799999999999997
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=1.7e-26 Score=253.06 Aligned_cols=139 Identities=19% Similarity=0.146 Sum_probs=119.2
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
.|+|..|.|++|.|....++.+.+++++.||.++++|+..++.+|+|||||+||+|+|.++++. |++|++|||++++.+
T Consensus 242 ~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Y 321 (411)
T TIGR03447 242 FDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHY 321 (411)
T ss_pred eecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCC
Confidence 5899999999999999999999999998899999999988899999999999999999999886 889999999997777
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++|+++.++..++.++++++++... . . . .+..+...+.++|
T Consensus 322 r~pl~fs~e~l~~a~~~l~rl~~~~~~~----~---~---------------------~--------~~~~~~~~~~~al 365 (411)
T TIGR03447 322 RQDRDWTDAVLAEAEARLARWRAALAAT----D---A---------------------P--------DATDLIARLRQHL 365 (411)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHhhc----c---c---------------------c--------hHHHHHHHHHHHH
Confidence 9999999999999999999988876321 0 0 0 1123345566677
Q ss_pred h-cCChHHHHHHHHHHH
Q 003160 581 D-KYFFGDVGRETYDFF 596 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~ 596 (843)
+ ++++..|+..+++++
T Consensus 366 ~dDln~p~a~~~l~~~~ 382 (411)
T TIGR03447 366 ANDLDTPAALAAVDNWA 382 (411)
T ss_pred HhcCChHHHHHHHHHHH
Confidence 4 799999999999887
No 52
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94 E-value=5.3e-26 Score=228.57 Aligned_cols=175 Identities=25% Similarity=0.476 Sum_probs=145.4
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHh--cCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhc
Q 003160 506 LSIERLTANKA-FTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDK 582 (843)
Q Consensus 506 f~~~~~~~~~~-~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~ 582 (843)
||++++++.++ |++||||++||+++ +..++.+.. .......++..|+|++++++.++++++++|++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~-----------~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~ 69 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGK-----------DDDAVASLNVLDRWILSRLNSLIKEVTEEMEA 69 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------cccccccCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999777 99999999999976 433322100 00011235778999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC----C
Q 003160 583 YFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR----K 658 (843)
Q Consensus 583 ~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~----~ 658 (843)
|+|+.|++.+++|++ .+++||++.+|++++++.+...+..++.++..+++.++++|||||||+|||||+++++. .
T Consensus 70 ~~f~~a~~~l~~f~~-~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~ 148 (183)
T cd07961 70 YDLYTAVRALLEFID-ELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAP 148 (183)
T ss_pred ccHHHHHHHHHHHHH-HhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCC
Confidence 999999999999997 56699999999999876323345678889999999999999999999999999999853 3
Q ss_pred CceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHH
Q 003160 659 EALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIR 692 (843)
Q Consensus 659 ~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir 692 (843)
+||+.++||+++. +.|+.++..++.++++++.+|
T Consensus 149 ~si~~~~wP~~~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 149 ESVHLLDWPEVDESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred CceeeecCCCCcccccCHHHHHHHHHHHHHHHhhC
Confidence 5899999999874 678889999999999999886
No 53
>PLN02946 cysteine-tRNA ligase
Probab=99.93 E-value=2.5e-25 Score=252.21 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=126.1
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe-eeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCC
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 499 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~ 499 (843)
+.|+|..|.|++|.|.-..++.+.+..|. ||-+.++| |||. .+|+|||||+||+|++.|++++||+|++|||+++..
T Consensus 277 ~~DIH~GG~DL~FPHHENEiAQsea~~g~-~~a~yW~H~G~v~-~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~h 354 (557)
T PLN02946 277 SFDIHGGGMDLVFPHHENEIAQSCAACCD-SNISYWIHNGFVT-VDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTH 354 (557)
T ss_pred CeeEeccccccCCCcccchHHHHHHHhCC-CCCceeeEeeEEE-eCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccC
Confidence 35899999999999999999988887775 55555555 8887 999999999999999999999999999999999987
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 003160 500 AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTAS 579 (843)
Q Consensus 500 ~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~ 579 (843)
+.++++|+++.+....+-+.++.++++.+...+..... . ....+ .+.-+...+..+...+.++
T Consensus 355 yr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~--------------~--~~~~~-~~~~~~~~~~~~~~~f~~A 417 (557)
T PLN02946 355 YRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDS--------------T--FEKDS-VPPDTLNCINKFHDEFVTS 417 (557)
T ss_pred CCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------------c--ccccc-cchhhHHHHHHHHHHHHHH
Confidence 79999999999999888888888887665432211000 0 00000 1111223455666788888
Q ss_pred hh-cCChHHHHHHHHHHHHHhhhHHHHH
Q 003160 580 YD-KYFFGDVGRETYDFFWSDFADWYIE 606 (843)
Q Consensus 580 ~e-~~~f~~a~~~i~~f~~~~~~~~Yle 606 (843)
|+ ++++..|+..+++++ ...|.++.
T Consensus 418 l~DDlntp~Al~~l~~~v--k~~N~~~~ 443 (557)
T PLN02946 418 MSDDLHTPVALAALSEPL--KTINDLLH 443 (557)
T ss_pred HHhccChHHHHHHHHHHH--HHHHHHhh
Confidence 85 799999999999998 45677764
No 54
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.93 E-value=1.4e-24 Score=217.64 Aligned_cols=175 Identities=26% Similarity=0.421 Sum_probs=144.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCh
Q 003160 506 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 585 (843)
Q Consensus 506 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f 585 (843)
++.+.+.+.+++++|+||++||+.+++.++.+.. . .......+..|+|++++++.++++++++|++|+|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~---------~--~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f 69 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAK---------D--AVPYEELLELDRYALHRLNELIKEVREAYENYEF 69 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCccc---------c--cCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 4678889999999999999999998776543200 0 0001245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC--CCceE
Q 003160 586 GDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR--KEALI 662 (843)
Q Consensus 586 ~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~--~~si~ 662 (843)
+.|++.+++|+++++||+|++.+|||++++. ++..+..+..+++.+++.++++|+|||||+||+||+.|++. .++++
T Consensus 70 ~~a~~~i~~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~ 149 (180)
T cd07960 70 HKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVF 149 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCee
Confidence 9999999999998999999999999998642 22344567889999999999999999999999999999864 46899
Q ss_pred ecCCCCCCC-cCCHHHHHHHHHHHHHHHHH
Q 003160 663 VSPWPQTSL-PRHMSAIKRFENLQSLTRAI 691 (843)
Q Consensus 663 ~~~~P~~~~-~~d~~~~~~~~~~~~vv~~i 691 (843)
.++||+.+. +.|++++..|+.++++-..+
T Consensus 150 ~~~wP~~~~~~~~~~~~~~~~~~~~i~~~~ 179 (180)
T cd07960 150 LEDWPELPEEWKDEELEEKWEKLLALRDEV 179 (180)
T ss_pred ccCCCCCcccccCHHHHHHHHHHHHHHHhh
Confidence 999999874 67888888888777665443
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=2.9e-24 Score=240.05 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=118.7
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
.|+|..|.|++|+|.-..++++.+.+|+ ||-+.++|+-++..+|+|||||+||+|++.+++++ |+++++||++++..+
T Consensus 234 ~DIH~GG~DliFPHHene~Aqs~a~~g~-~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~y 312 (481)
T PRK14534 234 LDIHLGGVDHIGVHHINEIAIAECYLNK-KWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHY 312 (481)
T ss_pred ceEEecccccCCCcchhHHHHHhhhcCC-CcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCC
Confidence 5899999999999999999998887775 66777777644458999999999999999999997 999999999999988
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++||++.+...++-++++++.++.+...+..... .. . . ....+ ........+...+.++|
T Consensus 313 r~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~--------~--~--~~~~~----~~~~~~~~~~~~f~~Al 375 (481)
T PRK14534 313 RTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDL-NL--------L--N--KDLEN----IEFSLEKEYYDSFLEKI 375 (481)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cc--------c--c--ccccc----chhhhHHHHHHHHHHHH
Confidence 9999999999999999999999887654332211000 00 0 0 00000 00001223445677777
Q ss_pred h-cCChHHHHHHHHHHH
Q 003160 581 D-KYFFGDVGRETYDFF 596 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~ 596 (843)
+ ++++..|+..+++++
T Consensus 376 ~DDlNtp~Al~~l~~~~ 392 (481)
T PRK14534 376 AFDLNIPQGLALLWDII 392 (481)
T ss_pred hhcCChHHHHHHHHHHH
Confidence 5 799999999999997
No 56
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.92 E-value=1e-24 Score=247.83 Aligned_cols=144 Identities=20% Similarity=0.269 Sum_probs=118.3
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCC---------------CceEEEEe-eeEECCCCCcccccCCCccChhhHHHh
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSV---------------PFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE 485 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~---------------Pf~~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~ 485 (843)
.|+|..|.|++|.|.-.-++.+.+.+|+. ||-+.++| |||+ .+|+|||||+||+|+|.+++++
T Consensus 447 ~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-vdGeKMSKSLGN~it~~dlLe~ 525 (699)
T PRK14535 447 FDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-VDGEKMSKSLGNFFTIREVLKQ 525 (699)
T ss_pred ceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-eCCCccCCCCCCcCCHHHHHHh
Confidence 58999999999999999999988877762 57888886 5665 9999999999999999999999
Q ss_pred hChhHHHHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHH
Q 003160 486 FGADALRFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWV 565 (843)
Q Consensus 486 yGaDalR~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 565 (843)
||+|++|||++++.+.++++|+++.+...++.+++++++++-+.. ... . .
T Consensus 526 ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~----~~~-------------------~-------~ 575 (699)
T PRK14535 526 YDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPA----AEF-------------------M-------L 575 (699)
T ss_pred CCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhh----ccc-------------------h-------h
Confidence 999999999999777999999999999999999999887653210 000 0 0
Q ss_pred HHHHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Q 003160 566 VSKLHMLIDTVTASYD-KYFFGDVGRETYDFF 596 (843)
Q Consensus 566 l~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~ 596 (843)
...+..+...+.++|+ ++++..|+..+++++
T Consensus 576 ~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv 607 (699)
T PRK14535 576 SENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607 (699)
T ss_pred hhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 1123445567777775 799999999999998
No 57
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.91 E-value=2.5e-24 Score=211.41 Aligned_cols=128 Identities=38% Similarity=0.662 Sum_probs=99.4
Q ss_pred EEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhh---------------------------------hhcccE
Q 003160 135 LYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYS---------------------------------QFIGMM 181 (843)
Q Consensus 135 ~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~---------------------------------~l~g~~ 181 (843)
-+.|+|++.+.+..|.|+||||+||+|.++||++|+++..+ -+.|.+
T Consensus 9 G~~i~F~i~~~~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv~tg~~ 88 (185)
T PF13603_consen 9 GAEIDFKIKGSNEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKNSERNKDFKEKEGVFTGLY 88 (185)
T ss_dssp EEEEEEEBTTSSCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EEEEEEE
T ss_pred cEEEEEEecCCCCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCHhHhhhhccccccCcCCCE
Confidence 46789999888889999999999999999999999986210 146889
Q ss_pred EEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccC----------------CCcccccCC
Q 003160 182 AIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK----------------DGTLNEVAG 245 (843)
Q Consensus 182 ~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~----------------~G~~~~~~g 245 (843)
+.||++ ++.+||+.++||.+++|||+||.|||||..||++|++||||+..++.. +|.++ ++|
T Consensus 89 aihP~t-~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~ 166 (185)
T PF13603_consen 89 AIHPLT-GKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSG 166 (185)
T ss_dssp EE-TTT-S-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSG
T ss_pred EECCCC-CCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCC
Confidence 999995 999999999999999999999999999999999999999998877653 36665 789
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 003160 246 LFRGLDRFEARKKLWSDLE 264 (843)
Q Consensus 246 ~~~G~~~~~ar~~i~~~L~ 264 (843)
+|.||+..+|+++|++.|+
T Consensus 167 ~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 167 EFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp GGTTSBHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999986
No 58
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.90 E-value=3.9e-23 Score=201.75 Aligned_cols=147 Identities=35% Similarity=0.690 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCC
Q 003160 562 ECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHP 641 (843)
Q Consensus 562 d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P 641 (843)
|+||+++++.++++++++|++|+|+.|++.+++|+++++||+|++.+|||++++.+...++ ++.++..+++.++++|+|
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll~P 79 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILLSP 79 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhccCC
Confidence 8999999999999999999999999999999999889999999999999999875544555 889999999999999999
Q ss_pred CchhhHHHHHHHhc----cCCCceEecCCCCCCC-cCCHHH-HHHHHHHHHHHHHHHhhhhhcCCCccceeeEEE
Q 003160 642 FMPFVTEELWQSLR----KRKEALIVSPWPQTSL-PRHMSA-IKRFENLQSLTRAIRNARAEYSVEPAKRISASI 710 (843)
Q Consensus 642 ~~P~iaEeiw~~L~----~~~~si~~~~~P~~~~-~~d~~~-~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i 710 (843)
||||+||++|++|+ +.++|++.+.||. .. ..+... +..++.++++++.+|++|++.+++++.+++++|
T Consensus 80 ~~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~~i~~~~~~~v~i 153 (153)
T PF08264_consen 80 FMPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEKNIKPKEPLKVVI 153 (153)
T ss_dssp TSHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCCEESTTCGEEEEE
T ss_pred CCcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCccC
Confidence 99999999997653 2346899999998 42 334445 788999999999999999999999999988765
No 59
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.89 E-value=1.5e-23 Score=213.39 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=81.1
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
|.|++.+|.|++|+|..++++.+.++.|+ ||.++++|+.+++.+|+|||||+||+|+|.|++++||+|++|||+++..+
T Consensus 128 ~~dih~~G~Dl~fpH~~~~~a~~~a~~g~-~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~ 206 (213)
T cd00672 128 TFDIHGGGVDLIFPHHENEIAQSEAATGK-PFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHY 206 (213)
T ss_pred CccEEeecCCCCcChHHHHHHHHHHHhCC-CCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCc
Confidence 46899999999999999999999999898 89999999888889999999999999999999999999999999999888
Q ss_pred ccccccC
Q 003160 501 GQDLSLS 507 (843)
Q Consensus 501 ~~D~~f~ 507 (843)
.++++|+
T Consensus 207 ~~~l~f~ 213 (213)
T cd00672 207 RSPLDFS 213 (213)
T ss_pred CCCCCCC
Confidence 8888886
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=5e-20 Score=213.12 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=132.9
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCCCCce-EEEEe---eeEECCCCCcccccCCCccChhhHHHh-hCh----------
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLH---GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGA---------- 488 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~-~v~~h---g~v~d~~G~KMSKS~GNvI~p~dii~~-yGa---------- 488 (843)
+++.|.|+... +.++. ..+...|..|.. +++.| |+|++.+|+|||||+||+|+|.|++++ +|+
T Consensus 276 i~V~g~~q~~h-f~~~~-~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~ 353 (507)
T PRK01611 276 IYVVGADHHGH-FKRLK-AALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEI 353 (507)
T ss_pred EEEECCChHHH-HHHHH-HHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhh
Confidence 45566666432 33332 333445555543 56676 899999999999999999999999999 999
Q ss_pred ------hHHHHHHHhCCcccccccCHHHHHHHHH--HHHHHHHHHHHH--HhcCCCCCchhHHHHHHhhccchhhhhcCC
Q 003160 489 ------DALRFTISLGTAGQDLSLSIERLTANKA--FTNKLWNAGKFI--LQNLPSQNDISRWEILLAYKFDEEECLCKA 558 (843)
Q Consensus 489 ------DalR~~l~~~~~~~D~~f~~~~~~~~~~--~~nkl~N~~rf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (843)
||+||++++..+++|+.|+++.+..... ..-..++.+|.. +........ ..... ...
T Consensus 354 a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~~~~yvqYa~aR~~sil~k~~~~~~------------~~~~~-~l~ 420 (507)
T PRK01611 354 AEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSILRKAAEAGI------------DLLLA-LLT 420 (507)
T ss_pred hhhhccceeEehhhhcCCCCCCccCHHHHHhhcCCCcHHHHHHHHHHHHHHHhhhccCc------------ccccc-ccC
Confidence 9999999988779999999999765321 111222222211 111000000 00000 111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCh---HHHHHHHHHHHHHHHHH
Q 003160 559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD---SDAIIAQAVLLYIFENI 635 (843)
Q Consensus 559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~---~~~~~~~~~l~~~l~~~ 635 (843)
++.|+|++.+|..+...+.+++++|+++.+++.+++|+ +.|++|| +.+ + +..+ .+ ..|.........+|...
T Consensus 421 ~~~e~~Ll~~L~~~~~~v~~a~~~~~p~~l~~yl~~la-~~f~~fY-~~~-~-l~~~-~~~~~~~Rl~L~~a~~~vl~~~ 495 (507)
T PRK01611 421 EEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELA-GAFHSFY-NRV-L-LKDE-EEELRNARLALVKATAQVLKNG 495 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHH-HHC-C-CCCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999998 7999999 323 2 3222 12 13334444455677777
Q ss_pred HHHhCCCc
Q 003160 636 LKLLHPFM 643 (843)
Q Consensus 636 l~LL~P~~ 643 (843)
+.||.-=.
T Consensus 496 l~lLgi~~ 503 (507)
T PRK01611 496 LDLLGISA 503 (507)
T ss_pred HHhcCCCc
Confidence 77775333
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.84 E-value=2.2e-20 Score=202.47 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=83.5
Q ss_pred CCcEEEEeehhh--hhHHHHHHHHHh-HhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHh
Q 003160 421 PTTMLETGHDIL--FFWVARMVMMGI-EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 421 P~d~~~~G~Di~--~~W~~~~~~~~~-~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
.+|+-+.|+|+. -+|+......+- .+.+..|+ .++||+|++.+|+|||||+||+|+|.++++.+|+|++||++++
T Consensus 227 ~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~--~~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~ 304 (353)
T cd00674 227 GVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPV--PVMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304 (353)
T ss_pred CCCEEeeCccccccccHHHHHHHHHHHHhCCCCCe--EEEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHh
Confidence 467778899997 468887777776 55556673 3889999987778999999999999999999999999999998
Q ss_pred CCc-ccccccCHH---HHHHHHHHHHHHHH
Q 003160 498 GTA-GQDLSLSIE---RLTANKAFTNKLWN 523 (843)
Q Consensus 498 ~~~-~~D~~f~~~---~~~~~~~~~nkl~N 523 (843)
... ..|++|+.+ .+..+.+|.+++|+
T Consensus 305 ~~~~~~~i~Fd~~~~~~~dey~r~~~~y~~ 334 (353)
T cd00674 305 RKNPEKHIGFDLDILRLYDEYDRLERKYYG 334 (353)
T ss_pred CCCCCCCCCcChhHHHHHHHHHHHHHHHcC
Confidence 874 999999986 44457788888865
No 62
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.3e-18 Score=186.28 Aligned_cols=147 Identities=21% Similarity=0.272 Sum_probs=126.1
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCcc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAG 501 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~~ 501 (843)
.|+|..|.|++|.|.-.-++.+.+.+|..||-++++|.-.+..+|+|||||+||+|+..|++++|++.+|||+|+++.+.
T Consensus 222 ~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR 301 (464)
T COG0215 222 FDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYR 301 (464)
T ss_pred cceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhC
Confidence 48999999999999999999999999988999999986666699999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhh
Q 003160 502 QDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYD 581 (843)
Q Consensus 502 ~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e 581 (843)
+.++||++.++.+++.+.+|.|+++.+.....+.. .. .+.....++.++|+
T Consensus 302 ~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~---------------------~~--------~~~~~~~~f~~al~ 352 (464)
T COG0215 302 SPLDFSEELLEEAKKALERLYNALRRLRDLAGDAE---------------------LA--------DLKEFEARFREALD 352 (464)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------------cc--------hhHHHHHHHHHHHH
Confidence 99999999999999999999999876653221110 00 34455566777774
Q ss_pred -cCChHHHHHHHHHHHH
Q 003160 582 -KYFFGDVGRETYDFFW 597 (843)
Q Consensus 582 -~~~f~~a~~~i~~f~~ 597 (843)
+|++..|+..+++++.
T Consensus 353 DDfnt~~al~~l~~l~~ 369 (464)
T COG0215 353 DDFNTPKALAVLFELAK 369 (464)
T ss_pred hccCcHHHHHHHHHHHH
Confidence 8999999999999973
No 63
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.71 E-value=2.8e-16 Score=149.74 Aligned_cols=135 Identities=43% Similarity=0.895 Sum_probs=109.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCh
Q 003160 506 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 585 (843)
Q Consensus 506 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f 585 (843)
||++.+.+.++|++|+||+++|+.++...... . .. +.......|+++++.++.+++++.++|++|+|
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~-~-----------~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~ 67 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDE-P-----------EE-DPESLSLADRWILSRLNKTVEEVTEALENYRF 67 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCc-c-----------cc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 68899999999999999999998654222111 0 00 01233567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 003160 586 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 586 ~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L 654 (843)
++|++.+++++.++++|+|++..+||...+ +.........++..++..++++|+|||||+|+++|+.|
T Consensus 68 ~~al~~i~~~~~~~~~N~Yi~~~~pW~~~~-~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 68 SEAATALYEFFWNDFCDWYLELVKPRLYGE-DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 999999999985569999999999997643 33345567788899999999999999999999999875
No 64
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.69 E-value=2e-16 Score=181.68 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=73.2
Q ss_pred CCcEEEEeehhhh-hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCC
Q 003160 421 PTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 499 (843)
Q Consensus 421 P~d~~~~G~Di~~-~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~ 499 (843)
.+|+-+.|+|+.. .|..........+.+..|+. ++||++++.+|+|||||+||+|+|.|+++.||+|++|||++...
T Consensus 234 ~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~ 311 (510)
T PRK00750 234 GVDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARP 311 (510)
T ss_pred CCCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCC
Confidence 4788889999999 88776655554555677854 78999998789999999999999999999999999999888665
Q ss_pred c-ccccccCH
Q 003160 500 A-GQDLSLSI 508 (843)
Q Consensus 500 ~-~~D~~f~~ 508 (843)
. .+|++|+.
T Consensus 312 ~~~~~~~f~~ 321 (510)
T PRK00750 312 KPAKRLDFDV 321 (510)
T ss_pred CCCCCCcccH
Confidence 5 99999998
No 65
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.65 E-value=2.3e-15 Score=139.77 Aligned_cols=116 Identities=24% Similarity=0.493 Sum_probs=95.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCh
Q 003160 506 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 585 (843)
Q Consensus 506 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f 585 (843)
|+.+.+.+..++++++|+.+....+.. .+ ...++..|+|++++++.++++++++|++|+|
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~-----------------~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f 60 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GE-----------------LEELTFIDRWLLSRLNRLIKETTEAYENMQF 60 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CC-----------------ccccchhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 677888899999999999876422211 11 0124568999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 003160 586 GDVGRET-YDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 586 ~~a~~~i-~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L 654 (843)
+.|++.+ ++|. +.+|+|++..+|| ....++..++..++++|+|||||+|||+|+.|
T Consensus 61 ~~a~~~~~~~~~--~~~~~Y~~~~~~~-----------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 61 REALKEGLYELQ--NDLDWYRERGGAG-----------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhCcc-----------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 9999997 7775 5899999998886 13468899999999999999999999999875
No 66
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.64 E-value=6.9e-16 Score=161.28 Aligned_cols=95 Identities=29% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
+.|+|..|.|++|.|.-.-++.+.+.+| .||.+.++|.-.+..+|+|||||+||+|+..|++++|+++++||+|++..+
T Consensus 206 ~~DIH~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hY 284 (300)
T PF01406_consen 206 TFDIHGGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHY 284 (300)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-T
T ss_pred CceEEccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCC
Confidence 4689999999999999999999999988 688999999554459999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHH
Q 003160 501 GQDLSLSIERLTANKA 516 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~ 516 (843)
.++++|+++.++.++|
T Consensus 285 r~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 285 RKPLNFSEENLEEAKN 300 (300)
T ss_dssp TS-EEE-HHHHHHHH-
T ss_pred CCccccCHHHHHHhcC
Confidence 9999999999987653
No 67
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.60 E-value=1.1e-14 Score=137.61 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=83.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHHHHHHHHHH
Q 003160 558 APLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENIL 636 (843)
Q Consensus 558 ~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~l 636 (843)
++..|+|++++++.++++++++|++|+|+.|++.+++|+ ++||+|++..|||...++ +....+....++..+++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELA--RAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH--HHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999999999998 799999999999987653 23344556677888889999
Q ss_pred HHhCCCchhhHHHHHHHh
Q 003160 637 KLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 637 ~LL~P~~P~iaEeiw~~L 654 (843)
++|+|||||+||+||+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999875
No 68
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.58 E-value=2.1e-14 Score=133.16 Aligned_cols=117 Identities=23% Similarity=0.335 Sum_probs=94.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCCh
Q 003160 506 LSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFF 585 (843)
Q Consensus 506 f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f 585 (843)
|+++.+.+.++|++++||++++..+.. .+ ....+.....|+|++++++.+++++.++|++|+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~--------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 63 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AA--------------PAAAAELSEEDKELRRKLHKTIKKVTEDIERLRF 63 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cc--------------cccccccchhhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 678899999999999999986543211 11 0000123557999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHh
Q 003160 586 GDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSL 654 (843)
Q Consensus 586 ~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L 654 (843)
++|++.+++|+ ..+|.|++..+| ...++..+++.++++|+|||||+||+||+.|
T Consensus 64 ~~a~~~i~~~~--~~~n~~~~~~~p-------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 64 NTAIAALMELV--NALYKYKKKDAQ-------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred hHHHHHHHHHH--HHHHHhhccccc-------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 99999999998 468888764333 4578889999999999999999999999875
No 69
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.3e-14 Score=153.28 Aligned_cols=169 Identities=18% Similarity=0.147 Sum_probs=142.8
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCcc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAG 501 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~~ 501 (843)
.|+|-.|.|+-|.|.-.-++.+.+.....++-+.++|.--+..+|+|||||++|+|+..+++++|.+++||++++...+.
T Consensus 259 lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr 338 (586)
T KOG2007|consen 259 LDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWR 338 (586)
T ss_pred cceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhc
Confidence 48999999999999999999999988888888999974444599999999999999999999999999999999999899
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh-
Q 003160 502 QDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY- 580 (843)
Q Consensus 502 ~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~- 580 (843)
++++|+.+.+.....+...+.|++.-+........ .++.++..+..+...+..+..+|..++
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~-----------------~~~~~~~~e~~l~~~~~~t~~~vh~al~ 401 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK-----------------PFEKLSEKEAELLEDFGKTQTAVHAALC 401 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------hhhccChHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999888888888776644332221111 123556778889999999999998877
Q ss_pred hcCChHHHHHHHHHHHHHhhhHHHHHhhh
Q 003160 581 DKYFFGDVGRETYDFFWSDFADWYIEASK 609 (843)
Q Consensus 581 e~~~f~~a~~~i~~f~~~~~~~~Yle~~K 609 (843)
++++...++..+.+++ ..+|-||....
T Consensus 402 d~~dT~~v~~~~~~lv--s~~N~~i~~~~ 428 (586)
T KOG2007|consen 402 DNFDTPRVMEAIRELV--SQGNAYIRESG 428 (586)
T ss_pred hccccHHHHHHHHHHH--hhhhHHHHHhc
Confidence 7899999999999998 78999998766
No 70
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=99.52 E-value=2.7e-14 Score=116.94 Aligned_cols=66 Identities=42% Similarity=0.636 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
|+++|++||+|+++++++++++++++|+|++|++|||++||+++++|+++++++++.+++.|+.|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999999999999999874
No 71
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.44 E-value=1.3e-12 Score=153.25 Aligned_cols=202 Identities=13% Similarity=0.048 Sum_probs=140.7
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhC-CCCceEEEEeeeEECCCCCcccccCCCccChh----------------------
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPI---------------------- 480 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~---------------------- 480 (843)
++|.|.|+.. ++.++...... .| ..| +++..|+|.+ .+|.|||||+||+|+|.
T Consensus 331 I~V~g~~q~~-h~~~v~~~l~~-lG~~~~-~~l~h~~~~~-V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~ 406 (566)
T TIGR00456 331 IYVWGSDHHL-HIAQFFAILEK-LGFYKK-KELIHLNFGM-VPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEE 406 (566)
T ss_pred EEEecCcHHH-HHHHHHHHHHH-cCCCCC-CceEEEEEEE-EECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccH
Confidence 7889999864 44444333222 34 334 7898999887 67899999999999998
Q ss_pred -hHHHhhChhHHHHHHHhCCcccccccCHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCC
Q 003160 481 -DTIKEFGADALRFTISLGTAGQDLSLSIERLTA-NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKA 558 (843)
Q Consensus 481 -dii~~yGaDalR~~l~~~~~~~D~~f~~~~~~~-~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (843)
++++.+|+|++||++++..+++|++||++.+.. +.+..+.+.|+..++.+.+..... .. ......+....
T Consensus 407 ~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~-~~-------~~~~~~~~~~~ 478 (566)
T TIGR00456 407 EDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHARICSILRKADI-DG-------EKLIADDFSLL 478 (566)
T ss_pred HHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHHHHHHHHhccc-cc-------ccccccccCCC
Confidence 788889999999999998889999999998655 445666677776655443221110 00 00000001122
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---HHHHHHHHHHHHHHHH
Q 003160 559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENI 635 (843)
Q Consensus 559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~---~~~~~~~~l~~~l~~~ 635 (843)
+..++.++..+..+...+..++++++++.++..+++++ ...|.|++.+ +....++++ .|.........+|...
T Consensus 479 ~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La--~~~N~yy~~~--~Vl~~~~~~~~~~RL~L~~a~~~vl~~g 554 (566)
T TIGR00456 479 EEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELA--SLFSSFYKAC--PVLDAENENLAAARLALLKATRQTLKNG 554 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH--HHHHHHHhcC--ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999998 6788888866 333332222 3444444556677777
Q ss_pred HHHhCC
Q 003160 636 LKLLHP 641 (843)
Q Consensus 636 l~LL~P 641 (843)
+.||.-
T Consensus 555 L~lLGI 560 (566)
T TIGR00456 555 LQLLGI 560 (566)
T ss_pred HHhcCC
Confidence 777753
No 72
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.33 E-value=5.5e-12 Score=143.93 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=67.2
Q ss_pred Eeehhhh---hHHHHHHHHHhHhhCCCCceEEEEeeeE-ECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCccc
Q 003160 427 TGHDILF---FWVARMVMMGIEFTGSVPFSHVYLHGLI-RDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTAGQ 502 (843)
Q Consensus 427 ~G~Di~~---~W~~~~~~~~~~~~~~~Pf~~v~~hg~v-~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~~~ 502 (843)
-|+|.+- .|..++-+.--.+.+..| .. +..+++ ++.+|+|||||+||+|++.++++.+|+|++||++++..+.+
T Consensus 231 ~GkDH~~~ggsy~~~~~ia~~~l~~~~P-~~-~~ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~ 308 (515)
T TIGR00467 231 AGKDHAAAGGSYDTGVNIAKEIFQYSPP-VT-VQYEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEF 308 (515)
T ss_pred CCCCccCccCCchhHHHHHHHHhCCCCC-cC-cEEEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCC
Confidence 3666653 255554433334446666 22 334444 66789999999999999999999999999999988888899
Q ss_pred ccccCHHHHHHHHHHHHHHHH
Q 003160 503 DLSLSIERLTANKAFTNKLWN 523 (843)
Q Consensus 503 D~~f~~~~~~~~~~~~nkl~N 523 (843)
+++|+.+.+ ...+-..++-.
T Consensus 309 ~ldFd~~~l-~~~dey~r~~~ 328 (515)
T TIGR00467 309 HISFDLDVI-KLYEDYDKFER 328 (515)
T ss_pred CCcCCHHHH-HHHHHHHHHHH
Confidence 999999977 54444444433
No 73
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.27 E-value=6.3e-11 Score=109.45 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHH
Q 003160 509 ERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDV 588 (843)
Q Consensus 509 ~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a 588 (843)
+.+.+..+++|++||+++++..+..+..+ . .........|+|++++++.++++++++|++|+|+.|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~-~-------------~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a 67 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQP-K-------------WDNELLEEADRELLARLQEFIKRTTNALEALDPTTA 67 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCC-C-------------cChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 56778889999999999987655433211 0 000122456999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCc
Q 003160 589 GRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFM 643 (843)
Q Consensus 589 ~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~ 643 (843)
++.+++|++ . .|+|++..|||.+.+ ........++..++..++++|+|||
T Consensus 68 ~~~i~~~~~-~-~n~y~~~~~pw~~~~---~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 68 VQELFKFTN-E-LNWYLDELKPALQTE---ELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHHHHHH-h-ccHHHHHhhHHHcCc---hhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999984 3 399999999998765 2344566788999999999999997
No 74
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=98.84 E-value=8.2e-08 Score=112.58 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=126.2
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCCCCce--EEEEeeeEECCCCCcccccCCCccChhhHHHh----------------
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGSVPFS--HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE---------------- 485 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~--~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~---------------- 485 (843)
++|.|.|+.. ++.++... +...|..+-. .++..|+|. .+|+||||.+||+|+.+|++++
T Consensus 328 IyV~g~dq~~-h~~~l~~~-~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l 404 (562)
T PRK12451 328 LYVVGPEQSL-HFNQFFTV-LKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNL 404 (562)
T ss_pred EEEeCCcHHH-HHHHHHHH-HHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhcccc
Confidence 7889999865 34444332 2233432212 457889997 7899999999999999999996
Q ss_pred ---------hChhHHHHHHHhCCcccccccCHHHHHH---HHHH-H----HHHHHHHHHHHhcCCCCCchhHHHHHHhhc
Q 003160 486 ---------FGADALRFTISLGTAGQDLSLSIERLTA---NKAF-T----NKLWNAGKFILQNLPSQNDISRWEILLAYK 548 (843)
Q Consensus 486 ---------yGaDalR~~l~~~~~~~D~~f~~~~~~~---~~~~-~----nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~ 548 (843)
-|.||+||++++..+.+++.||++.+.+ +.+- + -++..++|-.. . ....
T Consensus 405 ~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~--~-~~~~----------- 470 (562)
T PRK12451 405 KQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKES--V-EFET----------- 470 (562)
T ss_pred ccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcC--C-Cccc-----------
Confidence 7799999999999999999999999643 1111 0 01111111110 0 0000
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCC-hHHHHHHHHH
Q 003160 549 FDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY-DSDAIIAQAV 627 (843)
Q Consensus 549 ~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~-~~~~~~~~~~ 627 (843)
....-..+.+.-++..+..+...+.+++++++++.+++.+++++ ...|.|++.++ .+ .++. ...|......
T Consensus 471 ----~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA--~~fN~fy~~~~-Vl-~~~~~~~~RL~L~~a 542 (562)
T PRK12451 471 ----CTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVA--QSFNKYYGNVR-IL-EESAEKDSRLALVYA 542 (562)
T ss_pred ----cccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhCC-CC-CCHHHHHHHHHHHHH
Confidence 00111144567788999999999999999999999999999998 56777776543 23 2211 1133344445
Q ss_pred HHHHHHHHHHHhC
Q 003160 628 LLYIFENILKLLH 640 (843)
Q Consensus 628 l~~~l~~~l~LL~ 640 (843)
...+|...+.||.
T Consensus 543 ~~~vL~~gL~LLG 555 (562)
T PRK12451 543 VTVVLKEGLRLLG 555 (562)
T ss_pred HHHHHHHHHHhcC
Confidence 5567777777775
No 75
>PLN02286 arginine-tRNA ligase
Probab=98.75 E-value=5.7e-07 Score=105.62 Aligned_cols=204 Identities=13% Similarity=0.131 Sum_probs=130.9
Q ss_pred cEEEEeehhhhhHHHHHHHHHhHhhCCC-C----ceEEEEeeeEECCCCCcccccCCCccChhhHHHh------------
Q 003160 423 TMLETGHDILFFWVARMVMMGIEFTGSV-P----FSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE------------ 485 (843)
Q Consensus 423 d~~~~G~Di~~~W~~~~~~~~~~~~~~~-P----f~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~------------ 485 (843)
-++|.|.||.. ++.++.... ...|.. + --.++..|+|+..+|+||||.+||+|+.+|++++
T Consensus 330 ~IyVvg~~q~~-hf~~v~~~l-~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~ 407 (576)
T PLN02286 330 IIYVTDVGQQQ-HFDMVFKAA-KRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIER 407 (576)
T ss_pred EEEEEeCcHHH-HHHHHHHHH-HHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhc
Confidence 48899999864 444443332 223422 2 1256889999778999999999999999999994
Q ss_pred -----------------hChhHHHHHHHhCCcccccccCHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 003160 486 -----------------FGADALRFTISLGTAGQDLSLSIERLTAN---KAFTNKLWNAGKFILQNLPSQNDISRWEILL 545 (843)
Q Consensus 486 -----------------yGaDalR~~l~~~~~~~D~~f~~~~~~~~---~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~ 545 (843)
.|.||+||++++..+.++++||++.+.+. ... -+--+.-++.+-+..... .. .
T Consensus 408 ~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~p--YlQYahAR~~SIlrKa~~-~~----~ 480 (576)
T PLN02286 408 GKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAV--YLLYAHARICSIIRKSGK-DI----D 480 (576)
T ss_pred cCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChH--HHHHHHHHHHHHHHhccC-cc----c
Confidence 57999999999999999999999996531 111 000111111111100000 00 0
Q ss_pred hhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHH
Q 003160 546 AYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQ 625 (843)
Q Consensus 546 ~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~ 625 (843)
.........-..+.++-++..|..+...+..+.++++.+..+..++++. ..|..+|=+ + +.+ ..++...|....
T Consensus 481 --~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~LA-~~F~~fY~~-~-~Vl-~~~~~~aRL~L~ 554 (576)
T PLN02286 481 --ELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLS-EKFTKFYSN-C-KVN-GSEEETSRLLLC 554 (576)
T ss_pred --cccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHhc-C-ccC-CCCchhHHHHHH
Confidence 0000000111245677889999999999999999999999999999998 689899942 2 333 322223455555
Q ss_pred HHHHHHHHHHHHHhCC
Q 003160 626 AVLLYIFENILKLLHP 641 (843)
Q Consensus 626 ~~l~~~l~~~l~LL~P 641 (843)
.....+|...+.||.-
T Consensus 555 ~a~~~vL~~gL~LLGI 570 (576)
T PLN02286 555 EATAIVMRKCFHLLGI 570 (576)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 5666778888888753
No 76
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=8.4e-07 Score=102.93 Aligned_cols=205 Identities=20% Similarity=0.217 Sum_probs=132.1
Q ss_pred CCCc--EEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEE---eeeEECCCCCcccccCCCccChhhHHHhhC-------
Q 003160 420 YPTT--MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYL---HGLIRDSQGRKMSKTLGNVIDPIDTIKEFG------- 487 (843)
Q Consensus 420 ~P~d--~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~---hg~v~d~~G~KMSKS~GNvI~p~dii~~yG------- 487 (843)
+..| ++|.|.|+..+ +.++.+. +...|..|-+.+++ .|++++.+|.||||..|++|+.+|++++-|
T Consensus 332 ~~~d~~IyV~gadq~~~-~~ql~~~-l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~ 409 (577)
T COG0018 332 RGFDKLIYVLGADQHGH-FKQLKAV-LELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEM 409 (577)
T ss_pred cCCCEEEEEeCCcchhH-HHHHHHH-HHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHh
Confidence 4455 78899998653 3333221 12223333233444 466777899999999999999999999888
Q ss_pred ---------------hhHHHHHHHhCCcccccccCHHHHHHHHH--------HHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 003160 488 ---------------ADALRFTISLGTAGQDLSLSIERLTANKA--------FTNKLWNAGKFILQNLPSQNDISRWEIL 544 (843)
Q Consensus 488 ---------------aDalR~~l~~~~~~~D~~f~~~~~~~~~~--------~~nkl~N~~rf~~~~~~~~~~~~~~~~~ 544 (843)
.||+||++++..+.+++.|+++.+.+... -.-++..++|-.... ....
T Consensus 410 ~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~e~--~~~~------- 480 (577)
T COG0018 410 EEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAGED--ELDL------- 480 (577)
T ss_pred hhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcccc--cccc-------
Confidence 99999999999999999999998875221 001111221111100 0000
Q ss_pred HhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---HH
Q 003160 545 LAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DA 621 (843)
Q Consensus 545 ~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~---~~ 621 (843)
............++.++.+|..+..-+..+.++++.+..+..++++. ..|..||= +.++...++.. .|
T Consensus 481 -----~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA-~~Fn~fY~---~~~Vl~~~~~~~~~aR 551 (577)
T COG0018 481 -----STEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLA-GSFNSFYN---ACPVLGAENEELRAAR 551 (577)
T ss_pred -----ccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHh---hCCcCCCCcHHHHHHH
Confidence 00000001122367899999999999999999999999999999998 68999993 33444443331 33
Q ss_pred HHHHHHHHHHHHHHHHHhCCCch
Q 003160 622 IIAQAVLLYIFENILKLLHPFMP 644 (843)
Q Consensus 622 ~~~~~~l~~~l~~~l~LL~P~~P 644 (843)
.........+|...+.||--=+|
T Consensus 552 L~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 552 LALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc
Confidence 34444555677777777764333
No 77
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.54 E-value=1.2e-07 Score=97.61 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=79.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||.|+.||+|.+..|+|.+|.+++..+++.- .++++++.+.+.+.+.+++||+++| |.+
T Consensus 29 l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-----------------~~~~~~~~~~~~~~~~~~~L~i~~d~~~~- 90 (212)
T cd00671 29 LARILEFLGYDVTREYYINDWGRQIGLLILSLE-----------------KWRKLVEESIKADLETYGRLDVRFDVWFG- 90 (212)
T ss_pred HHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhCCcCceecc-
Confidence 579999999999999999999999876654321 1567889999999999999999999 877
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCC
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNL 117 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~ 117 (843)
|.+. ...++.++.+|.++|++|.....+..|+.+
T Consensus 91 --es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~ 124 (212)
T cd00671 91 --ESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTE 124 (212)
T ss_pred --hhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence 5554 888999999999999999988777666543
No 78
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.96 E-value=1.9e-05 Score=85.55 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=42.4
Q ss_pred CCcEEEEeehhhh---hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHh
Q 003160 421 PTTMLETGHDILF---FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 421 P~d~~~~G~Di~~---~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
.+|+--.|+|..- -|-..-- ++-...|..|. .-+.-.|+++..|.|||||+||+++|.|.++-+.+++|||+++.
T Consensus 234 gVdfEp~GKDH~~~GGS~d~~~~-I~~~i~g~~pP-~~~~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~ 311 (360)
T PF01921_consen 234 GVDFEPFGKDHASPGGSYDTSKR-IAREILGYEPP-VPFPYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMAR 311 (360)
T ss_dssp T-SEEEEEHHHHCTTSHHHHHHH-HHHHCC------EEEEE--EEES--------------HHHHHTTS-HHHHHHHHHC
T ss_pred CceeccCCCccCCCCCChhhHHH-HHHHHhCCCCC-CCCCeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcc
Confidence 5667778999986 3443322 22223344342 45678999988888999999999999999999999999999999
Q ss_pred CCcccccccCHH
Q 003160 498 GTAGQDLSLSIE 509 (843)
Q Consensus 498 ~~~~~D~~f~~~ 509 (843)
..|.+..+|+.+
T Consensus 312 ~~P~~~~~~~~~ 323 (360)
T PF01921_consen 312 TKPNKAKDFSFD 323 (360)
T ss_dssp S-TTS-EEE--S
T ss_pred cCCCcceEeccC
Confidence 777444444443
No 79
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=97.30 E-value=0.00031 Score=78.00 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred CCCc--EEEEeehhhhhHHHHHHHHHhHhhCC----CCceEEEEeeeEECCCCC-cccccCCCccChhhHHH--------
Q 003160 420 YPTT--MLETGHDILFFWVARMVMMGIEFTGS----VPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPIDTIK-------- 484 (843)
Q Consensus 420 ~P~d--~~~~G~Di~~~W~~~~~~~~~~~~~~----~Pf~~v~~hg~v~d~~G~-KMSKS~GNvI~p~dii~-------- 484 (843)
+..| +++.|.||.. |+.++..+.-. .|. .. -..+.+|+++..+|+ |||+.+||+|..+|+++
T Consensus 236 ~~~d~~iyV~~~~q~~-hf~~l~~~l~~-lg~~~~~~~-~~H~~~g~vl~~~gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 236 YGFDKIIYVVGADQKG-HFKQLFAILEA-LGYDPEAVK-LQHVSFGVVLLKDGKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp SS-SEEEEEEEGGGHH-HHHHHHHHHHH-TT-HHHHCT-EEEEEE-EEEETTBEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred hccccEEEEecCchhh-HHHHHHHHHHH-hCCCCCCCE-EEEEEEEEEEcCCCCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 4555 7889999864 34443322222 222 22 123568999889997 99999999999999999
Q ss_pred ------------------hhChhHHHHHHHhCCcccccccCH
Q 003160 485 ------------------EFGADALRFTISLGTAGQDLSLSI 508 (843)
Q Consensus 485 ------------------~yGaDalR~~l~~~~~~~D~~f~~ 508 (843)
..|.+|+||++++..+.+|+.|+|
T Consensus 313 ~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 313 IMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp HHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred HHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 567888888888887788888874
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00033 Score=78.23 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=48.7
Q ss_pred hhC-CCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc--ccccccCH
Q 003160 446 FTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA--GQDLSLSI 508 (843)
Q Consensus 446 ~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~--~~D~~f~~ 508 (843)
+.| .+| .. ++-.++.+..|.|||||+||+|++.|.++-+-++.|||+++...| ..|++|+.
T Consensus 256 i~g~~pP-~~-~~YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~ 319 (521)
T COG1384 256 IFGYEPP-VP-FVYEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDL 319 (521)
T ss_pred hcCCCCC-CC-CceEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCcceecCCCC
Confidence 345 444 33 466777767789999999999999999999999999999999877 55666655
No 81
>PLN02563 aminoacyl-tRNA ligase
Probab=96.35 E-value=0.007 Score=75.17 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHcCCceeeccc--------------cccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 252 RFEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 252 ~~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
.....+.+...|-++|++++.+.. +..+++|+|||.+++.+..+||||+++++++++++.++. .
T Consensus 210 y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~--~ 287 (963)
T PLN02563 210 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDD--L 287 (963)
T ss_pred HHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhh--c
Confidence 356778899999999999875422 234578999999999999999999999999999999975 3
Q ss_pred eEecchhHHHHHHHhh
Q 003160 318 TIMPERFEKIYNHWLS 333 (843)
Q Consensus 318 ~~~P~~~~~~~~~~l~ 333 (843)
. +|+..++.-++||-
T Consensus 288 ~-wp~~v~~~q~nwiG 302 (963)
T PLN02563 288 D-WPESIKEMQRNWIG 302 (963)
T ss_pred C-CCHHHHHHHHHhcc
Confidence 4 69999999999984
No 82
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=95.82 E-value=0.0089 Score=67.42 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=40.0
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHH--hHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhh
Q 003160 420 YPTTMLETGHDILFFWVARMVMMG--IEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~--~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~d 481 (843)
+.+++.+.|.||... .++..- -.+....| ..+++.++.+.+|.|||||.||.|+..+
T Consensus 185 ~~~~iq~gG~DQ~~n---i~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d 243 (410)
T PRK13354 185 EDVDLQIGGTDQWGN---ILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP 243 (410)
T ss_pred CCCCEEEecHHHHHH---HHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC
Confidence 468899999999543 222222 22233445 4557888888999999999999998766
No 83
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.014 Score=70.24 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCceeecc--------------ccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCee-Ee
Q 003160 256 RKKLWSDLEETGLAVKKEP--------------HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT-IM 320 (843)
Q Consensus 256 r~~i~~~L~~~g~l~~~~~--------------~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~-~~ 320 (843)
.+-+...|.++|++++.+. +.-..+.|||||.+|+.+.-.||||++.+++++|++.+.. .. ..
T Consensus 137 ~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~--l~~~w 214 (814)
T COG0495 137 IQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDK--LATLW 214 (814)
T ss_pred HHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhh--hccCC
Confidence 4667788999999987542 2234467999999999999999999999999999988763 44 58
Q ss_pred cchhHHHHHHHhhC
Q 003160 321 PERFEKIYNHWLSN 334 (843)
Q Consensus 321 P~~~~~~~~~~l~~ 334 (843)
|++.+..-.+||..
T Consensus 215 PE~Vk~mq~nWIg~ 228 (814)
T COG0495 215 PETVKGMQRNWIGP 228 (814)
T ss_pred chhHHHHHHcCcCC
Confidence 99999999999954
No 84
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=95.75 E-value=0.015 Score=71.95 Aligned_cols=80 Identities=31% Similarity=0.520 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCceeeccc--------------c-ccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 253 FEARKKLWSDLEETGLAVKKEPH--------------T-LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 253 ~~ar~~i~~~L~~~g~l~~~~~~--------------~-~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
.++.+.+...|-++|++++.+.. + ...++|||||.+++.+..+||||+++++++++++.++. .
T Consensus 129 ~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~--~ 206 (842)
T TIGR00396 129 YKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEE--L 206 (842)
T ss_pred HHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhh--h
Confidence 46677888999999998864321 1 12378999999999999999999999999999999975 3
Q ss_pred eEecchhHHHHHHHhhC
Q 003160 318 TIMPERFEKIYNHWLSN 334 (843)
Q Consensus 318 ~~~P~~~~~~~~~~l~~ 334 (843)
..+|++.++...+||-.
T Consensus 207 ~~wp~~v~~~q~~wig~ 223 (842)
T TIGR00396 207 DHWPESVKEMQRNWIGK 223 (842)
T ss_pred ccccHHHHHHHHhcccc
Confidence 46999999999999853
No 85
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.72 E-value=0.024 Score=60.57 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=36.3
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhhC-CCCceEEEEeeeEECCCCCcccccCCCccC
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFTG-SVPFSHVYLHGLIRDSQGRKMSKTLGNVID 478 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~-~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~ 478 (843)
+..++...|.||.... .++-++- .+.+ ..| ..+++.++.+.+|.|||||.||.++
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~--r~n~~~~p--~~l~~p~l~~l~G~KMSKS~~~~i~ 208 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELAR--RFNGFTIA--EGLTIPLVTKLDGPKFGKSESGPKW 208 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHH--HhCCCCCC--eEEeeccccCCCCCcCCCCCCCCcc
Confidence 3458999999995422 2222222 2222 245 3456689999999999999999974
No 86
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.48 E-value=0.14 Score=49.78 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=81.6
Q ss_pred hhChhHHHHHHHhCCcccccccCHHHHHHH-H-------HHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhc
Q 003160 485 EFGADALRFTISLGTAGQDLSLSIERLTAN-K-------AFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLC 556 (843)
Q Consensus 485 ~yGaDalR~~l~~~~~~~D~~f~~~~~~~~-~-------~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (843)
+.|.|++||++++..+..++.||++.+... . .-..++.|+++-... .... ....+..
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~------------~~~~~~~ 66 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEA------------EADADLS 66 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCcc------------ccccchh
Confidence 468999999999999999999999986531 1 112223333221110 0000 0000001
Q ss_pred CC-ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---HHHHHHHHHHHHH
Q 003160 557 KA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIF 632 (843)
Q Consensus 557 ~~-~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~---~~~~~~~~l~~~l 632 (843)
.+ ...++-++..+..+.+.+..++.+.+++.++..+.++. ..+.++| +.+ ++..+ +.+ .|......+..++
T Consensus 67 ll~~~~E~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~ff-d~v--~V~~~-~~~i~~nRL~Ll~~v~~vl 141 (156)
T cd07956 67 LLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLA-HAFSKFY-NAC--PVLGA-EEELRNARLALVAAARQVL 141 (156)
T ss_pred hcCCHHHHHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHH-HHHHHHH-hcC--cccCC-CHHHHHHHHHHHHHHHHHH
Confidence 11 33567778888888888899999999999999999987 3455555 433 22332 322 3334444555566
Q ss_pred HHHHHHhC
Q 003160 633 ENILKLLH 640 (843)
Q Consensus 633 ~~~l~LL~ 640 (843)
...+.+|.
T Consensus 142 ~~~l~llg 149 (156)
T cd07956 142 ANGLDLLG 149 (156)
T ss_pred HHHHHhcC
Confidence 66777764
No 87
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.38 E-value=0.023 Score=60.71 Aligned_cols=53 Identities=23% Similarity=0.096 Sum_probs=36.6
Q ss_pred CcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccC
Q 003160 422 TTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVID 478 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~ 478 (843)
.++...|.||....- ++-++-- +....| -.+.|.++.+.+|+|||||.||.++
T Consensus 152 ~~l~~~G~DQ~~~i~~~rd~a~r--~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~ 205 (269)
T cd00805 152 VDLQLGGSDQRGNITLGRDLIRK--LGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW 205 (269)
T ss_pred CCeeEecHHHHHHHHHHHHHHHH--hCCCCc--EEEeeccccCCCCCcccCCCCCccc
Confidence 489999999964322 2222222 222334 4568899999999999999999984
No 88
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=95.20 E-value=0.096 Score=54.12 Aligned_cols=74 Identities=20% Similarity=0.149 Sum_probs=48.0
Q ss_pred CcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCC
Q 003160 422 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGT 499 (843)
Q Consensus 422 ~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~ 499 (843)
.+..+=|.|.+.-= .+..+.-.+.+ ..| ...-++++++.+|+|||||.|+ .+..++.++ |.+++++-|++..+
T Consensus 110 IThViRG~D~l~st~~q~~l~~~Lg~--~~P--~~~H~pll~~~~g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 110 ITHVLRGEDHLDNTPIQDWLYEALGW--EPP--RFYHFPRLLLEDGTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CCEEEECHhhhhchHHHHHHHHHcCC--CCC--eEEEeeeeeCCCCCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 34555677776421 11222222221 334 6677888999999999999998 456665543 88999999988654
Q ss_pred c
Q 003160 500 A 500 (843)
Q Consensus 500 ~ 500 (843)
.
T Consensus 185 ~ 185 (230)
T cd00418 185 W 185 (230)
T ss_pred C
Confidence 4
No 89
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.89 E-value=0.016 Score=55.67 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=40.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIK 68 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~ 68 (843)
++||.|++|++|.++.|+|.+|.++...+ .+.|.+++ +|++.+.+.++++++
T Consensus 26 ~~r~lr~~G~~v~~~~~~dd~~~~~~~~a----~~~~~~~~------------~~~~~~~~~~~~~~~ 77 (143)
T cd00802 26 LAQAYRKLGYKVRCIALIDDAGGLIGDPA----NKKGENAK------------AFVERWIERIKEDVE 77 (143)
T ss_pred HHHHHHHcCCCeEEEeeeCCCchHHHHHH----HhcCCCHH------------HHHHHHHHHHHHHHH
Confidence 47999999999999999999999965443 34455554 466777777777777
No 90
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.84 E-value=0.044 Score=52.53 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=33.6
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccC
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTL 473 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~ 473 (843)
.++++.|.|+.. ++.....+.-.+.+..+ ...+.+|++...+|+|||||+
T Consensus 94 ~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~-p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 94 CDIHLGGSDQLG-HIELGLELLKKAGGPAR-PFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred cEEEEechhHHH-HHHHHHHHHHHhCCCCC-ceEEEeCCeECCCCCcCCCCC
Confidence 589999999987 33333333333323322 356778999988889999995
No 91
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=94.81 E-value=0.029 Score=63.44 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=46.8
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHh
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
+.+++.+.|.||..... .+-++- .+..+.+| .+...++.+.+|+|||||.||.|+..| ++..++.++=++.+
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~--r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQR--RYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHH--HhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 57899999999965322 122222 22223343 356777888999999999999998776 23445555555554
No 92
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=94.70 E-value=0.056 Score=66.67 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHcCCceeeccc--------------cccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 252 RFEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 252 ~~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
..++-..+...|-++|++++.+.. +...++|+|||.+++.+..+||||+++++++++++.++...
T Consensus 131 ~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~- 209 (805)
T PRK00390 131 YYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLE- 209 (805)
T ss_pred HHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhc-
Confidence 456778899999999999875321 22347899999999999999999999999999999997633
Q ss_pred eEecchhHHHHHHHhhCCCceeeeeec-ccCCCCceEEE
Q 003160 318 TIMPERFEKIYNHWLSNIKDWCISRQL-WWGHRIPVWYI 355 (843)
Q Consensus 318 ~~~P~~~~~~~~~~l~~l~DW~ISRq~-~WG~pIP~~~~ 355 (843)
. +|++.+..-.+||..-.-+.|.=.. .-+..+++|..
T Consensus 210 ~-w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TT 247 (805)
T PRK00390 210 D-WPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTT 247 (805)
T ss_pred c-CcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeC
Confidence 3 5999988889998644444332111 11245677654
No 93
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=94.57 E-value=0.12 Score=59.57 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=42.9
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHH
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTIS 496 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~ 496 (843)
.+..+-|.|.+..-+. .+.+.-++ |..+ ..+.-++++++.+|.||||..| .++..+++++ |-+.+++-+++
T Consensus 198 ithvIrG~d~~~~t~~-~~~l~~aL-g~~~-p~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~ 269 (470)
T TIGR00464 198 ITHVIRGEDHISNTPK-QILIYQAL-GWKI-PVFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLA 269 (470)
T ss_pred CCEEEECchhhcCHHH-HHHHHHHc-CCCC-CeEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHH
Confidence 3455578887753221 21111122 3222 3666677788899999999999 8888888886 23444444443
No 94
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=94.46 E-value=0.049 Score=59.04 Aligned_cols=62 Identities=23% Similarity=0.168 Sum_probs=39.8
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCCC-cccccCCC-ccChhh
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGN-VIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~GN-vI~p~d 481 (843)
+-+++...|.||.... .++-++-.+......|-...+++.++...+|. |||||.+| .|+..|
T Consensus 148 l~~~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 148 LKADLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp TTHSEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred eccccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEec
Confidence 3456899999997632 33333333322211122367778899899999 99999999 777666
No 95
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=94.14 E-value=0.077 Score=58.23 Aligned_cols=60 Identities=30% Similarity=0.440 Sum_probs=38.6
Q ss_pred cCCCcEEEEeehhhhh-HHHHHHHHHhHh-hC---CCCceEEE--EeeeEECCCCCcccccCCCccCh
Q 003160 419 FYPTTMLETGHDILFF-WVARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDP 479 (843)
Q Consensus 419 ~~P~d~~~~G~Di~~~-W~~~~~~~~~~~-~~---~~Pf~~v~--~hg~v~d~~G~KMSKS~GNvI~p 479 (843)
.|.+|+...|.||... =++|-++..+.. .| ..| ..++ .|.++...+|+|||||.+|.|..
T Consensus 147 ~~~~d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P-~~~~~~~~~~l~gLdg~KMSKS~~n~I~L 213 (332)
T PRK12556 147 LFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLP-EYVIQEEGAILPGLDGRKMSKSYGNVIPL 213 (332)
T ss_pred hccCCEEEeccccHHHHHHHHHHHHHHHHhccccCCCc-eeccccccccccCCCCCCCCCCCCCcccc
Confidence 3567888899999853 345555443321 11 235 3333 36667778999999999999843
No 96
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=93.95 E-value=0.061 Score=68.12 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=57.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh-HhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVA-RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~-kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
-.+++|++||+|+++++++++++.+- +++++.|++++|+.+ +++++++++++++++.++.
T Consensus 845 ~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl-~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 845 ARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARA-EELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999998 899999999999999 9999999999999999886
No 97
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.064 Score=61.66 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCceeeccc---------------cccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeE
Q 003160 255 ARKKLWSDLEETGLAVKKEPH---------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTI 319 (843)
Q Consensus 255 ar~~i~~~L~~~g~l~~~~~~---------------~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~ 319 (843)
=-+-|.-.|-+.|+.+..|.. .-..+.+||||.+||...-.||||+++++++++++.++. ..=
T Consensus 159 WTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~--L~~ 236 (876)
T KOG0435|consen 159 WTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLET--LPE 236 (876)
T ss_pred HHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHh--hhh
Confidence 346677888899998765422 124577999999999999999999999999999999974 333
Q ss_pred ecchhHHHHHHHhh
Q 003160 320 MPERFEKIYNHWLS 333 (843)
Q Consensus 320 ~P~~~~~~~~~~l~ 333 (843)
+|+ .++.-.+||-
T Consensus 237 W~~-vk~mQrnWIG 249 (876)
T KOG0435|consen 237 WPE-VKDMQRNWIG 249 (876)
T ss_pred hhh-HHHHHHhhcc
Confidence 566 6778889983
No 98
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.62 E-value=0.098 Score=58.62 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=39.1
Q ss_pred CCCcEEEEeehhhh-hHHHHHHHHHhHh-hC----CCCceEEEE--eeeEECCCCCcccccCCCccChhh
Q 003160 420 YPTTMLETGHDILF-FWVARMVMMGIEF-TG----SVPFSHVYL--HGLIRDSQGRKMSKTLGNVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~----~~Pf~~v~~--hg~v~d~~G~KMSKS~GNvI~p~d 481 (843)
|.+|+...|.||.. .=++|-++..+.. .| ..| ..++. +..+.+.+|+|||||.||.|...|
T Consensus 147 y~ad~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~P-e~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLP-EAVIEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCC-ccccccccccccCCCCccccCCCCCEeeecC
Confidence 45788888999975 3445555443321 11 134 33332 456778899999999999995544
No 99
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=93.26 E-value=0.14 Score=59.62 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=52.5
Q ss_pred EEEEeeeEECCCCCcccccC-------C--------CccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTL-------G--------NVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~-------G--------NvI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
..+-+|++. .+|.|||||+ | +..+...+.+. |.++|+|.|++..+. ..|..|+++.+.+ |+
T Consensus 325 ~~~H~~~L~-~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 325 ETIHYGRLK-IEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINR 403 (567)
T ss_pred eEEEcceec-CCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 556677775 7999999999 4 22444555555 999999999998888 7999999999987 77
Q ss_pred HHHHHH
Q 003160 516 AFTNKL 521 (843)
Q Consensus 516 ~~~nkl 521 (843)
+.++..
T Consensus 404 ~~ld~~ 409 (567)
T PRK04156 404 KLIDPI 409 (567)
T ss_pred HHHhcc
Confidence 776654
No 100
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=93.06 E-value=0.11 Score=57.14 Aligned_cols=58 Identities=26% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCcEEEEeehhhhh-HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCC--cccccC-CCccChhh
Q 003160 420 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTL-GNVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~-W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~-GNvI~p~d 481 (843)
|.+|+...|.||... =++|-++-. +....| ..+.|.++.+.+|. |||||. ||.|...|
T Consensus 167 ~~ad~vpvG~DQ~~h~~l~Rdia~~--~n~~~p--~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D 228 (329)
T PRK08560 167 LDVDIAVGGMDQRKIHMLAREVLPK--LGYKKP--VCIHTPLLTGLDGGGIKMSKSKPGSAIFVHD 228 (329)
T ss_pred hCCCEEEechhHHHHHHHHHHhhHh--cCCCCc--eEEEcCccCCCCCCCCCCcCCCCCCeecccC
Confidence 568899999999753 333433322 222345 45668899999998 999999 99998765
No 101
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=92.52 E-value=0.082 Score=58.01 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=50.3
Q ss_pred CCCcEEEEeehhhh-hHHHHHHHHHhHh-hC---CCCceEEEEeee---EECCCCCcccccCCC-ccChhhHHHhhChhH
Q 003160 420 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVYLHGL---IRDSQGRKMSKTLGN-VIDPIDTIKEFGADA 490 (843)
Q Consensus 420 ~P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~---~~Pf~~v~~hg~---v~d~~G~KMSKS~GN-vI~p~dii~~yGaDa 490 (843)
|-+|+...|.||.. +=++|-++--+.- .+ ..| ..+.|.+ +.+.+|+|||||.+| .|...| ..|.
T Consensus 138 ~~~d~vpvG~DQ~~h~elaRdia~r~n~~~~~~f~~P--~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D-----~~e~ 210 (328)
T TIGR00233 138 YQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKP--ESLISKFFPRLMGLSGKKMSKSDPNSAIFLTD-----TPKQ 210 (328)
T ss_pred cCCCeeecccccHHHHHHHHHHHHHhhhhcCcccCCC--hhhhccccCCCCCCCCCcCCCCCCCCeEeecC-----CHHH
Confidence 45788889999975 3445555443321 01 345 3445554 445567899999997 887665 5555
Q ss_pred HHHHHHhC-Cc-ccccccCHHHH
Q 003160 491 LRFTISLG-TA-GQDLSLSIERL 511 (843)
Q Consensus 491 lR~~l~~~-~~-~~D~~f~~~~~ 511 (843)
++=-+.++ .+ +..+.++...-
T Consensus 211 I~~KI~~a~td~~~~~~~~~~~~ 233 (328)
T TIGR00233 211 IKKKIRKAATDGGRVTLFEHREK 233 (328)
T ss_pred HHHHHHhcCCCCCCCcccCcCCC
Confidence 55555553 22 44555554333
No 102
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.77 E-value=0.69 Score=48.21 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=49.1
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHH-hhChhHHHHHHHhCC
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGT 499 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~-~yGaDalR~~l~~~~ 499 (843)
-.+..+-|.|.+.. ..++..+.-++.-..| .+.-++.+++.+|+||||+.|+ .+...+.+ .+-+.+++-|++..+
T Consensus 118 ~ithViRG~D~~~~-t~~q~~l~~aLg~~~p--~~~h~pll~~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 118 GITHVIRGEEHLSS-TPKQILLYEALGWEPP--KFAHLPLILNPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CCCEEEEChhhhhC-hHHHHHHHHHcCCCCC--ceEeeccccCCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 35566779988753 2222222222211233 5667788889999999999999 45555544 377899999998654
Q ss_pred c
Q 003160 500 A 500 (843)
Q Consensus 500 ~ 500 (843)
.
T Consensus 194 ~ 194 (239)
T cd00808 194 W 194 (239)
T ss_pred C
Confidence 4
No 103
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=91.58 E-value=0.65 Score=53.69 Aligned_cols=72 Identities=22% Similarity=0.157 Sum_probs=45.6
Q ss_pred cEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhC
Q 003160 423 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLG 498 (843)
Q Consensus 423 d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~ 498 (843)
+..+-|.|.+..-+.. +.+--++.-..| .+.-++++++.+|.||||..| .++..++.+. |-+.|++-|++..
T Consensus 209 thvIrG~d~~~~t~~q-~~l~~alG~~~p--~~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~l 281 (476)
T PRK01406 209 THVIRGEDHLSNTPKQ-ILLYEALGWEVP--VFAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALL 281 (476)
T ss_pred CEEEECchhhcCHHHH-HHHHHHhCCCCC--eEEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHh
Confidence 4445788876533221 111112211233 555567788999999999999 7888888886 4667777776653
No 104
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.17 E-value=0.19 Score=56.07 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=36.6
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHh-hCCCCceEEEEeeeEECCCCCcccccCCCcc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 477 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~-~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI 477 (843)
-.|+.+.|.|| |...+++.-+.- .|..+ ...+++.++.+.+|.|||||.||.+
T Consensus 180 ~~dlq~GG~DQ---~~ni~~grdl~rr~g~~~-~~~lt~PLL~~ldG~KmgKs~~~a~ 233 (401)
T COG0162 180 NKDLQLGGSDQ---WGNILAGRDLIRRLGQKK-VVGLTTPLLTGLDGKKMGKSEGGAV 233 (401)
T ss_pred ccchhcCChHH---HHHHHHHHHHHHHhCCCC-eEEEEeccccCCCCCcccccCCCce
Confidence 36799999999 554444332221 23333 4567788899999999999999943
No 105
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.95 E-value=0.18 Score=54.17 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCcEEEEeehhhhh-HHHHHHHHHhHhh----CCCCceEEEEee--eEECCCC-CcccccCCC-ccChhh
Q 003160 421 PTTMLETGHDILFF-WVARMVMMGIEFT----GSVPFSHVYLHG--LIRDSQG-RKMSKTLGN-VIDPID 481 (843)
Q Consensus 421 P~d~~~~G~Di~~~-W~~~~~~~~~~~~----~~~Pf~~v~~hg--~v~d~~G-~KMSKS~GN-vI~p~d 481 (843)
-+++.-.|.||-.. =.+|-++..+... -..| ..+.|. .+.+.+| .|||||.+| +|...|
T Consensus 145 ~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P--~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 145 QATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLP--EALISKVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred cCCeeccCCCchHHHHHHHHHHHHHHhhcCCccCCc--cccccCCCcccCCCCCCcccccCCCCeeeccC
Confidence 34566679999753 3445554433210 1234 666777 8888999 899999999 775433
No 106
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=90.67 E-value=0.3 Score=54.60 Aligned_cols=70 Identities=20% Similarity=0.102 Sum_probs=43.2
Q ss_pred CCCcEEEEeehhhh-hHHHHHHHHHhHhhCCCCceEEEEeeeEECC-CC-CcccccCCC-ccChhhHHHhhChhHHHHHH
Q 003160 420 YPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTLGN-VIDPIDTIKEFGADALRFTI 495 (843)
Q Consensus 420 ~P~d~~~~G~Di~~-~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~GN-vI~p~dii~~yGaDalR~~l 495 (843)
+.+|+...|.||.. +=++|-++-.+ +..|-.-+..|.++... +| .|||||.+| .|...| .++.+|=-+
T Consensus 209 l~adivpvG~DQ~~~~~LaRdia~~~---~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----spe~I~kKI 280 (383)
T PTZ00126 209 LKADICQLGMDQRKVNMLAREYCDKK---KIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SEEDVNRKI 280 (383)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHHh---CCCCCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CHHHHHHHH
Confidence 56888889999954 34445444332 22121134467888877 45 799999988 587665 445555444
Q ss_pred Hh
Q 003160 496 SL 497 (843)
Q Consensus 496 ~~ 497 (843)
.+
T Consensus 281 ~k 282 (383)
T PTZ00126 281 KK 282 (383)
T ss_pred Hh
Confidence 44
No 107
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.35 E-value=0.21 Score=55.56 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=44.4
Q ss_pred CCcEEEEeehhhh-hHHHHHHHHHhHh-hC-CCCceEEEEeeeEECCCCCcccccC-CCccChhhHHHhhChhHHHHHHH
Q 003160 421 PTTMLETGHDILF-FWVARMVMMGIEF-TG-SVPFSHVYLHGLIRDSQGRKMSKTL-GNVIDPIDTIKEFGADALRFTIS 496 (843)
Q Consensus 421 P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~-~~Pf~~v~~hg~v~d~~G~KMSKS~-GNvI~p~dii~~yGaDalR~~l~ 496 (843)
-.++...|.||.. +=++|-++-.+.- .| ..| ..+.|.++...+|.|||||. +|.|...| .++.++=-+.
T Consensus 203 ~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P--~~l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kKI~ 275 (368)
T PRK12285 203 KPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKP--SSTYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKKIM 275 (368)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhhhcCCCCc--hhHhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHHHH
Confidence 4567888999975 3345555443310 11 234 34557788889999999998 67887666 4444444444
Q ss_pred h
Q 003160 497 L 497 (843)
Q Consensus 497 ~ 497 (843)
+
T Consensus 276 k 276 (368)
T PRK12285 276 K 276 (368)
T ss_pred h
Confidence 4
No 108
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=90.23 E-value=0.28 Score=52.65 Aligned_cols=71 Identities=23% Similarity=0.209 Sum_probs=43.3
Q ss_pred CCCcEEEEeehhhhh-HHHHHHHHHhHhh----CCCCceEEEEe--eeEECCCC--CcccccCC-CccChhhHHHhhChh
Q 003160 420 YPTTMLETGHDILFF-WVARMVMMGIEFT----GSVPFSHVYLH--GLIRDSQG--RKMSKTLG-NVIDPIDTIKEFGAD 489 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~-W~~~~~~~~~~~~----~~~Pf~~v~~h--g~v~d~~G--~KMSKS~G-NvI~p~dii~~yGaD 489 (843)
|.+++...|.||... =.+|-++-.+... -..| ..+.| .++...+| .|||||.| |.|...| .+|
T Consensus 136 ~~~~~vpvG~DQ~~h~~l~Rdia~r~n~~~~~~~~~P--~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d-----~~~ 208 (280)
T cd00806 136 YKACLVPVGIDQDPHLELTRDIARRFNKLYGEIFPKP--AALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTD-----SPK 208 (280)
T ss_pred ccCCEEeeccccHHHHHHHHHHHHHhccccccccCCC--eeeccCCCccccCCCCCCcccCCCCCCeEEeeC-----CHH
Confidence 345777789999653 2334333322200 1244 55667 78877777 49999999 9997765 444
Q ss_pred HHHHHHHh
Q 003160 490 ALRFTISL 497 (843)
Q Consensus 490 alR~~l~~ 497 (843)
.+|=-+..
T Consensus 209 ~i~~KI~~ 216 (280)
T cd00806 209 EIKKKIMK 216 (280)
T ss_pred HHHHHHHh
Confidence 45444443
No 109
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=90.16 E-value=0.28 Score=53.91 Aligned_cols=62 Identities=29% Similarity=0.382 Sum_probs=39.7
Q ss_pred cCCCcEEEEeehhhh-hHHHHHHHHHhHh-hCC----CCceEEEE-eeeEECCCC-CcccccCCCccChhh
Q 003160 419 FYPTTMLETGHDILF-FWVARMVMMGIEF-TGS----VPFSHVYL-HGLIRDSQG-RKMSKTLGNVIDPID 481 (843)
Q Consensus 419 ~~P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~~----~Pf~~v~~-hg~v~d~~G-~KMSKS~GNvI~p~d 481 (843)
+|.+|+...|.||.. +=++|-++-.+.. .++ .| +.++. |.++.+.+| .|||||.+|.|...|
T Consensus 140 ~~~~d~vpvG~DQ~~h~~laRdiA~~~n~~~~~~~~~~p-~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 140 AFKATLVPVGDDQLPMIEQTREIVRRFNSLYGTDVLVEP-EALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred hhCCCEEEeccccHHHHHHHHHHHHHHhhhcCCccccCc-hhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 467899999999975 3455665543331 121 12 22222 456777777 899999999997655
No 110
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=89.86 E-value=2.2 Score=36.53 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+..||.++++++......++.++.+|..+ .-|++-.+.-.+.+..+.+.+...++.|+.|+.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~----eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRR----ELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHccc----CCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56899999999999999999999999984 446666666667777777777777777777765
No 111
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=89.70 E-value=0.43 Score=53.45 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=38.3
Q ss_pred hhhhhcCCCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhh
Q 003160 414 DDFKKFYPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 481 (843)
Q Consensus 414 ~~~~~~~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~d 481 (843)
-||-.. -+|+.+.|.||...- ..+.++ -.+.+..+| .+.+.++...+|.|||||.||.|+..+
T Consensus 171 ~D~~~l-~~di~~gG~DQ~~ni~~g~dLa--r~~~~~~~~--~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 171 YDFVYL-NVDLQIGGSDQWGNIRKGRDLI--RRNLPSLGF--GLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred HHHHHH-cCCeeEecchhHHHHHHHHHHH--HHhcCCCce--eeceeeecCCCCCCccCCCCCcccCCc
Confidence 344333 367999999996432 122222 222233343 355566667889999999999886543
No 112
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=87.68 E-value=0.42 Score=52.66 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=45.1
Q ss_pred CCCcEEEEeehhhh-hHHHHHHHHHhHh-hC---CCCceEEEE-e-eeEECCCCC--cccccCC---CccChhhHHHhhC
Q 003160 420 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---SVPFSHVYL-H-GLIRDSQGR--KMSKTLG---NVIDPIDTIKEFG 487 (843)
Q Consensus 420 ~P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~---~~Pf~~v~~-h-g~v~d~~G~--KMSKS~G---NvI~p~dii~~yG 487 (843)
|.+|+...|.||.. +=++|-++-.+.. .+ ..| ..++. | .++...+|. |||||.+ |.|...| .
T Consensus 137 ~~~divpvG~DQ~~h~elaRdia~~~n~~~~~~f~~P-~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D-----~ 210 (333)
T PRK00927 137 YKADLVPVGEDQKQHLELTRDIARRFNNLYGEVFPVP-EPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD-----D 210 (333)
T ss_pred cCCCEEeeccchHHHHHHHHHHHHHhhhhccccCCCC-hhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----C
Confidence 46789999999975 3445555433221 11 245 33432 2 567778887 9999999 8997665 4
Q ss_pred hhHHHHHHHh
Q 003160 488 ADALRFTISL 497 (843)
Q Consensus 488 aDalR~~l~~ 497 (843)
+|.++=-+.+
T Consensus 211 ~~~I~~KI~~ 220 (333)
T PRK00927 211 PKTIAKKIKK 220 (333)
T ss_pred HHHHHHHHHh
Confidence 4555544544
No 113
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=86.74 E-value=2.9 Score=43.45 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=45.2
Q ss_pred EEEEeeeEECCCCCcccccCCC------cc----Chh----hHHH--hhChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGN------VI----DPI----DTIK--EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GN------vI----~p~----dii~--~yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
.++..+++ +.+|+||||+.|- .+ +|. ..+. .|-++|++=|++..+. ..|..|+++.+.. |+
T Consensus 151 ~~~~~~hl-n~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 151 HQWEFSRL-NLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred ceeEEEEE-CCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 33344555 7999999999962 22 121 2222 3778999999998888 8999999999986 55
Q ss_pred HHH
Q 003160 516 AFT 518 (843)
Q Consensus 516 ~~~ 518 (843)
+.+
T Consensus 230 ~~i 232 (238)
T cd00807 230 KDL 232 (238)
T ss_pred HHh
Confidence 443
No 114
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=85.48 E-value=2 Score=48.78 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=50.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+|..+-++.++++++++++++++++.+|+... +.+.|+.+++.+++++++.++++++++
T Consensus 238 l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-----------k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 238 LNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-----------KKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999986532 677888888888888888888888764
No 115
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.84 E-value=0.36 Score=53.74 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=27.2
Q ss_pred eeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 458 HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 458 hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
|..|.+.+|+|||||.+|.|...| .+|.+|=-+..+
T Consensus 254 ~~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~a 289 (398)
T PRK12283 254 ASKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRTM 289 (398)
T ss_pred CCcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 678888999999999999997666 455555555543
No 116
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=82.21 E-value=2.7 Score=43.18 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=30.7
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCC--CCceEEEEeeeEECCCCCcccccCC
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGS--VPFSHVYLHGLIRDSQGRKMSKTLG 474 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~--~Pf~~v~~hg~v~d~~G~KMSKS~G 474 (843)
+++.|.|+..... ++..+. ...|. .|--..+.+|+|+..+|.||||..|
T Consensus 162 i~v~g~~~~~~~~-~~~~~~-~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 162 IYVVGADHHGHFK-RLFAAL-ELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEECCCHHHHHH-HHHHHH-HHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 5689999975332 222222 22232 2323556679999877999999987
No 117
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=82.08 E-value=6.7 Score=45.48 Aligned_cols=87 Identities=20% Similarity=0.138 Sum_probs=55.3
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHH-hhChhHHHHHHHhCCc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK-EFGADALRFTISLGTA 500 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~-~yGaDalR~~l~~~~~ 500 (843)
.+-.+-|.|++..-+. .+.+--++ |..+ ..+.-+++|++.+|.||||+.|.. ...++.+ .|-+.|++=||+..+.
T Consensus 197 ithVIRG~d~~~~t~~-q~~l~~aL-G~~~-p~~~H~plv~~~~g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG~ 272 (513)
T PRK14895 197 ITHIIRGDDHLTNAAR-QLAIYQAF-GYAV-PSMTHIPLIHGADGAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLGW 272 (513)
T ss_pred CCEEEECchHhhhHHH-HHHHHHHc-CCCC-CeEEEEEeEEcCCCCccccccCch-hHHHHHHCCCCHHHHHHHHHHhCC
Confidence 4455578888753322 22222222 3222 377778999999999999999975 4555555 3888999999985444
Q ss_pred --ccccccCHHHHH
Q 003160 501 --GQDLSLSIERLT 512 (843)
Q Consensus 501 --~~D~~f~~~~~~ 512 (843)
+.+-.|+.+.+.
T Consensus 273 s~~~~e~~~~~el~ 286 (513)
T PRK14895 273 SHGDDEIISMTQAI 286 (513)
T ss_pred CCCCcCCCCHHHHH
Confidence 333346666554
No 118
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=81.70 E-value=5.3 Score=45.43 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=41.9
Q ss_pred EEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLT 512 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~ 512 (843)
...-++++++.+|+||||+.|.+ +..++.+. |-++|++=||+..+. ..+--|+.+.+.
T Consensus 221 ~f~Hlpli~~~~g~KLSKR~~~~-~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli 280 (433)
T PRK12410 221 TYAHLPIILNEEGKKMSKRDNAS-SVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAI 280 (433)
T ss_pred eEEEeeeeeCCCCCeeecccChh-hHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHH
Confidence 45556889999999999999854 56666554 889999999987655 334445555443
No 119
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=79.45 E-value=6 Score=41.27 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=45.6
Q ss_pred EEEEeeeEECCCCCcccccCCC------cc----C-----hhhHHH-hhChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGN------VI----D-----PIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GN------vI----~-----p~dii~-~yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
...-++.+. .+|+||||+.+. .+ | ...+.+ .|-+++++-|++..+. ..+..++++.+.. ++
T Consensus 153 ~~~H~pll~-~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 153 ETIHWGRLK-IEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred cEEeeeeec-CCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 455667776 568999999852 11 2 222222 3778999999988777 8889999998876 56
Q ss_pred HHHH
Q 003160 516 AFTN 519 (843)
Q Consensus 516 ~~~n 519 (843)
+.++
T Consensus 232 ~~l~ 235 (240)
T cd09287 232 KLID 235 (240)
T ss_pred HHhc
Confidence 5544
No 120
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=79.32 E-value=4.2 Score=47.18 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=50.6
Q ss_pred EeeeEECCCCCcccccC------CCccC---------hhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-HHHHH
Q 003160 457 LHGLIRDSQGRKMSKTL------GNVID---------PIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFT 518 (843)
Q Consensus 457 ~hg~v~d~~G~KMSKS~------GNvI~---------p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~~~~ 518 (843)
.|-..++..|.||||++ .+.++ ...+... |-++|+|=|++..+. ..|..++++.+.+ +++.+
T Consensus 235 ~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR~~l 314 (523)
T PLN03233 235 HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEI 314 (523)
T ss_pred eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHHHHh
Confidence 56666789999999997 34443 4444443 889999999999888 8899999999987 77776
Q ss_pred HHH
Q 003160 519 NKL 521 (843)
Q Consensus 519 nkl 521 (843)
+..
T Consensus 315 d~~ 317 (523)
T PLN03233 315 DKR 317 (523)
T ss_pred ccc
Confidence 664
No 121
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=79.31 E-value=7.6 Score=47.00 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.++++++++++++++++++.++..|+++.+-+..+.....+..+.+++++++++.+.+.-.+|.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999999998765554433344444455555555555544444443
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.17 E-value=16 Score=35.95 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+++.++..|+.++..+++++..++..|++ +.+.|.. ++-+..+++++++++.++..|+.|++
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~---L~~~~t~--~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELAS---LSSEPTN--EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888888888888888888888877 4566643 33556777888888888888887775
No 123
>PLN02486 aminoacyl-tRNA ligase
Probab=78.34 E-value=2.1 Score=47.95 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=39.9
Q ss_pred EEEEeehhhh-hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhhHHHhhChhHHHHHHHh
Q 003160 424 MLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 424 ~~~~G~Di~~-~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~dii~~yGaDalR~~l~~ 497 (843)
+.-.|.||-. +=++|-++-- +....| .++.|.++....| .|||||.+| .|...| .++.++=.+..
T Consensus 222 lVPvG~DQd~~~~ltRdia~r--~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 222 LIPCAIDQDPYFRMTRDVAPR--LGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred eeecccchHHHHHHHHHHHHH--hCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 4556999875 3344444332 223355 3344566766776 799999988 687766 55555555554
No 124
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=78.33 E-value=9.8 Score=40.40 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=54.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
-|+..+..-++.+++-++++.+++++.|...+ +-+-+-+.+.+|.+.+.+++.++..++.|.+.+..
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 47888888888899999999999998887533 33445566788999999999999999999986643
No 125
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.13 E-value=9.7 Score=38.25 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=57.2
Q ss_pred CeEEEecCCC--ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 759 GLEAYLPLAD--MVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 759 ~~~~~~~l~~--~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+..+|=.+.+ .......+.+|+++++.++++++.++.++.... ..+.+.+-+.+.-+++++++++++++++.|+.+.
T Consensus 52 ssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 52 SSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred CeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456643433 245666788899999999999999999888863 3566666677777888888888888888887654
Q ss_pred h
Q 003160 837 S 837 (843)
Q Consensus 837 ~ 837 (843)
.
T Consensus 131 ~ 131 (188)
T PF03962_consen 131 E 131 (188)
T ss_pred h
Confidence 3
No 126
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=76.55 E-value=7.6 Score=44.35 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred EEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc--ccccccCHHHHHH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA--GQDLSLSIERLTA 513 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~--~~D~~f~~~~~~~ 513 (843)
...-++++++.+|+|+||+.|. ++..++.+. |-++|++=||+..+. +.+--|+.+.+..
T Consensus 226 ~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~ 287 (445)
T PRK12558 226 VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAE 287 (445)
T ss_pred eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 6667789999999999999886 466666664 899999999987554 4344467766543
No 127
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=76.54 E-value=22 Score=30.52 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+.++++.|+++..+++++++.+...| ...|+.+++.--++|.+|.+--.--+..+..+..+
T Consensus 5 l~~~~~~L~~~~~~l~~~i~~~~~~l------~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA~~ 65 (83)
T PF07061_consen 5 LEAEIQELKEQIEQLEKEISELEAEL------IEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIADQ 65 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------ccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888877 57899999999999998886555545444444443
No 128
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=73.35 E-value=3.6 Score=49.43 Aligned_cols=58 Identities=22% Similarity=0.118 Sum_probs=35.2
Q ss_pred CCCcEEEEeehhhhh-HHHHHHHHHhHhhCCCCceEE-EEeeeEECCCC--CcccccC-CCccChhh
Q 003160 420 YPTTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHV-YLHGLIRDSQG--RKMSKTL-GNVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~-W~~~~~~~~~~~~~~~Pf~~v-~~hg~v~d~~G--~KMSKS~-GNvI~p~d 481 (843)
|.+|+...|.||..+ =++|-++-. .|..| +.+ ..|.++.+.+| .|||||. +|.|...|
T Consensus 174 l~adivpvG~DQ~qh~eLaRdia~~---~g~~~-kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 174 LKADICQLGLDQRKVNMLAREYCDL---IGRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred cCCCEEEeCccHHHHHHHHHHHHHH---hCCCC-CceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 457888889999653 334433322 23222 223 34666666653 6999999 68996544
No 129
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=72.24 E-value=13 Score=41.26 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc--------------cCC---------HHHHHHHHHHHHHHHHHHHHHH
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE--------------KAP---------EDVVRGVQEKAAEAEEKINLTK 829 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~--------------kap---------~~vv~~~~~kl~~~~~~l~~~~ 829 (843)
..+++.|++|+..||+++..++++|....=.. -|| ++-+.+++++++..+-+.+.|+
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~aa~~gA~~~~~~~a~~~aP~~~a~~~~T~d~~~~~~qqiAn~~lKv~~l~ 103 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPAAAPGGAAIGPAATAAAAAPSSDAQAGLTNDDATEMRQQIANAQLKVESLE 103 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccCCCcccccccChHHHHHHHHHHHhhhhhHHHHh
Confidence 45788899999999999999999987633211 235 6778888999999999998888
Q ss_pred HHHHH
Q 003160 830 NRLAF 834 (843)
Q Consensus 830 ~~l~~ 834 (843)
++.+.
T Consensus 104 da~~t 108 (514)
T PF11336_consen 104 DAAET 108 (514)
T ss_pred hHHhc
Confidence 87653
No 130
>PF14282 FlxA: FlxA-like protein
Probab=71.95 E-value=23 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.+..+++|++++..|+++|..+... ...+++ ..+++...++.+|..|+..|..+..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~-------~~~~~e---~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD-------SDLDAE---QKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc-------cCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999887663 122332 2245666677777777777766654
No 131
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=71.89 E-value=8.3 Score=45.04 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=50.4
Q ss_pred CCceEEEEeeeEECCCCCcccccCCCc------c---------ChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHH
Q 003160 450 VPFSHVYLHGLIRDSQGRKMSKTLGNV------I---------DPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLT 512 (843)
Q Consensus 450 ~Pf~~v~~hg~v~d~~G~KMSKS~GNv------I---------~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~ 512 (843)
.|. ++--|++ +.+|.||||+++.. + +...+.++ |-++|+|=|++..+. ..|..++++.+.
T Consensus 255 ~P~--~~~F~rl-n~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~ 331 (554)
T PRK05347 255 HPR--QYEFSRL-NLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLE 331 (554)
T ss_pred CCc--eEEEEEE-CCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHH
Confidence 463 3333444 68999999999651 2 34555554 889999999999888 889999999998
Q ss_pred H-HHHHHHHH
Q 003160 513 A-NKAFTNKL 521 (843)
Q Consensus 513 ~-~~~~~nkl 521 (843)
+ +++.++..
T Consensus 332 ~~nRk~ld~~ 341 (554)
T PRK05347 332 SCIREDLNEN 341 (554)
T ss_pred HHHHHHhccC
Confidence 7 66666554
No 132
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=71.44 E-value=11 Score=43.03 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=51.2
Q ss_pred CCCcCcccccchHHHHHHH--HHcCC----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCccccCchhH
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEGI----KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQL 87 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g~----~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~ 87 (843)
|+|.=|-|-+-- ..-..+ ++.|- ..+|..++. -.+.+.+.|.+.|++||+.+| | | ...+.
T Consensus 11 PTG~lHiG~art-AL~n~l~Ar~~gG~fiLRIEDTD~~R-------s~~~~~~~I~e~L~wLGI~~De~---y--~QSer 77 (445)
T PRK12558 11 PTGYLHVGNART-ALLNWLYARKHGGKFILRIDDTDLER-------SKQEYADAIAEDLKWLGINWDRT---F--RQSDR 77 (445)
T ss_pred CCCcccHHHHHH-HHHHHHHHHHhCCEEEEEeccCCccc-------chHHHHHHHHHHHHHcCCCCCcc---c--cHHHH
Confidence 679999987632 222333 34432 223333221 235677899999999998877 4 2 22333
Q ss_pred HHHHHHHHHHHHHcCceeeC
Q 003160 88 SRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 88 ~~~v~~~F~~L~~~GlIyr~ 107 (843)
...++.+..+|.++|++|+-
T Consensus 78 ~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 78 FDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred HHHHHHHHHHHHHCCCEEEe
Confidence 45788999999999999864
No 133
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=71.11 E-value=8.4 Score=44.80 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=42.9
Q ss_pred ECCCCCcccccCCCc---------------cChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-HHHHHHH
Q 003160 462 RDSQGRKMSKTLGNV---------------IDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTNK 520 (843)
Q Consensus 462 ~d~~G~KMSKS~GNv---------------I~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~~~~nk 520 (843)
++.+|.||||+++.. .+...+.+. |-++|+|=|++..+. ..|...++..+.+ ++.|...
T Consensus 235 ln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~ 311 (522)
T TIGR00440 235 LNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNE 311 (522)
T ss_pred ECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhh
Confidence 468999999999875 245566554 889999999998777 5555566666665 5555443
No 134
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=71.08 E-value=28 Score=31.66 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=54.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCh---HHHHHHHHHHHHHHHHH
Q 003160 559 PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD---SDAIIAQAVLLYIFENI 635 (843)
Q Consensus 559 ~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~---~~~~~~~~~l~~~l~~~ 635 (843)
...++-++..+..+...+..+++.++++.+++.++++. ..+..+| +.. ++..++++ ..|-........++..+
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La-~~f~~fy-~~~--~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELA-QAFNSFY-DNV--RILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHH-HHHHHHH-HHS---STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHH-hhc--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999999998 4677777 322 34444333 22344444555666667
Q ss_pred HHHhC
Q 003160 636 LKLLH 640 (843)
Q Consensus 636 l~LL~ 640 (843)
+.||.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 77765
No 135
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=67.54 E-value=44 Score=28.04 Aligned_cols=58 Identities=12% Similarity=0.311 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
+...++.+..|...+|+.++.++..+.+ +.+-.+|+..+.+++..++.+...+.++++
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~-----------v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPD-----------VTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456788899999999999999887754 566678888888999999998888888765
No 136
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=66.60 E-value=13 Score=43.57 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=51.3
Q ss_pred EEEEeeeEECCCCCcccccCCC------cc----Chh-----hHHH-hhChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGN------VI----DPI-----DTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GN------vI----~p~-----dii~-~yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
.+.-++++++..|.|+||++.- .+ ||. .+.. .|-++|+|=|++..+. ..|..++++.+.+ ++
T Consensus 315 ~~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nr 394 (560)
T TIGR00463 315 EFIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSWKNIYAFNK 394 (560)
T ss_pred eEEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeHHHHHHHHH
Confidence 7888999999999999998731 11 222 2222 3789999999999887 8899999999987 66
Q ss_pred HHHHHH
Q 003160 516 AFTNKL 521 (843)
Q Consensus 516 ~~~nkl 521 (843)
+.++..
T Consensus 395 ~~id~~ 400 (560)
T TIGR00463 395 KIIDPI 400 (560)
T ss_pred HHhCcC
Confidence 665543
No 137
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=65.93 E-value=50 Score=27.77 Aligned_cols=58 Identities=10% Similarity=0.136 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
+....+.+++..++.+..-|..++--+.+ +|......-..++.+|+.++.++++.|+.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~------~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRS------LPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT------S-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566788888888888888888877765 48899999999999999999999988753
No 138
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=63.99 E-value=27 Score=42.23 Aligned_cols=63 Identities=22% Similarity=0.437 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++++++++++++++++++.++..|+++.+.+. ++....+..+++++++++++.+.+.-.++..
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 630 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVADADFFSQ-PHEQTQKVLADLADAEQELEVAFERWEELEA 630 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33889999999999999999999999877543 3335566667777777777777776666653
No 139
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.92 E-value=43 Score=37.44 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=52.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
.|+..-.++|.++++.|++++++...++. .++..-|..+...-.++..-+++.+++.-..+.++..++
T Consensus 236 ~~L~~~~~~L~kqie~L~qeie~~~~~~r--~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl 303 (439)
T KOG2911|consen 236 ADLIQARAKLAKQIEFLEQEIEKSKEKLR--QALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVL 303 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 47778899999999999999999999998 666777887776666666666666666666666665543
No 140
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.26 E-value=95 Score=35.64 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=72.7
Q ss_pred CcccccCCCccChhhHHH----------------------------hhChhHHHHHHHhCCcccccccCHHHHHHHH-HH
Q 003160 467 RKMSKTLGNVIDPIDTIK----------------------------EFGADALRFTISLGTAGQDLSLSIERLTANK-AF 517 (843)
Q Consensus 467 ~KMSKS~GNvI~p~dii~----------------------------~yGaDalR~~l~~~~~~~D~~f~~~~~~~~~-~~ 517 (843)
+-||.-+|+++-..|+++ ..|+-|+..=.+.....++..|+|+++-... +-
T Consensus 366 ~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdt 445 (567)
T KOG1195|consen 366 QGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDT 445 (567)
T ss_pred ccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCc
Confidence 368888888888777776 4566677666655555777888887765311 00
Q ss_pred -HHHHHHHH--HHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChh-HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 003160 518 -TNKLWNAG--KFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLP-ECWVVSKLHMLIDTVTASYDKYFFGDVGRETY 593 (843)
Q Consensus 518 -~nkl~N~~--rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~ 593 (843)
.--.++-+ +-+..+..+... +. +. ......+... -.-++..|..+.+-+..+++.++.+..+..++
T Consensus 446 g~yLQY~HsRL~Slerk~~~~~~-~~---l~------~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~ 515 (567)
T KOG1195|consen 446 GPYLQYTHSRLRSLERKFSDVTL-DD---LD------EIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLF 515 (567)
T ss_pred hHHHHHHHHHHHHHHHhccccCc-hh---hh------ccchhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHH
Confidence 00001111 111222221111 00 00 0111112221 23467888899999999999999999999998
Q ss_pred HHHHHhhhHHH
Q 003160 594 DFFWSDFADWY 604 (843)
Q Consensus 594 ~f~~~~~~~~Y 604 (843)
++. ..++..|
T Consensus 516 ~La-~a~s~~y 525 (567)
T KOG1195|consen 516 KLA-HAVSSAY 525 (567)
T ss_pred HHH-HHHHhHH
Confidence 887 4566666
No 141
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.79 E-value=25 Score=36.50 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=38.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNR 831 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~ 831 (843)
.++.+|+.+++|+..+|+.|++.++++++... ..+.+..+.++.+++++...
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~----------~~~~t~~~~ie~~l~~l~~~ 104 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSVR----------RSVLTDDAALEDRLEKLRML 104 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHHhHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999887732 34445555555555555443
No 142
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.79 E-value=37 Score=28.37 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
-++||+.+.+.+..++..+=+-+..-+|-.||-..++...+.--++.+++-+-+.-.+..|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er~EedAildlY~~aL 82 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAERQEEDAILDLYMDAL 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999998776655555555544444444443
No 143
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=61.48 E-value=19 Score=42.52 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=48.6
Q ss_pred EEEEeeeEECCCCCcccccCCCcc----------Chh-----hHH-HhhChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVI----------DPI-----DTI-KEFGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI----------~p~-----dii-~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
..+-.+ .++.+|.||||+++.-. ||. -+. .-|.++++|=|+...+. ..+..|+++.+.. ++
T Consensus 275 ~~~h~~-rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~nr 353 (601)
T PTZ00402 275 IVEDFS-RLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNT 353 (601)
T ss_pred eEEEEe-eEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 444445 46899999999998521 111 111 24889999999998877 8899999999987 66
Q ss_pred HHHHHH
Q 003160 516 AFTNKL 521 (843)
Q Consensus 516 ~~~nkl 521 (843)
+.++..
T Consensus 354 ~~l~~~ 359 (601)
T PTZ00402 354 QILDPS 359 (601)
T ss_pred HHHhhc
Confidence 666654
No 144
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=60.69 E-value=9.6 Score=44.57 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=48.9
Q ss_pred ECCCCCcccccCCCc---------------cChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-HHHHHHHHHH
Q 003160 462 RDSQGRKMSKTLGNV---------------IDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NKAFTNKLWN 523 (843)
Q Consensus 462 ~d~~G~KMSKS~GNv---------------I~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~~~~nkl~N 523 (843)
++.+|.||||+++.. .+...+..+ |-++|+|=|++..+. ..|..++++.+.+ +++.+++..+
T Consensus 280 ln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~ 359 (574)
T PTZ00437 280 LNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDERCE 359 (574)
T ss_pred ecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHHHHhcccCc
Confidence 468999999999884 233444443 889999999999888 8899999999987 7777776533
No 145
>PRK11020 hypothetical protein; Provisional
Probab=60.60 E-value=59 Score=29.31 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
+..+|+++|..+|++++-.++..+. ....+++.+-....+.+.+++++++.
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~---------rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASL---------RGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887777755 34445555555555555555555443
No 146
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=59.37 E-value=21 Score=23.17 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003160 815 QEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 815 ~~kl~~~~~~l~~~~~~l~~l 835 (843)
+.||++|+++|+++++..++.
T Consensus 4 qakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 567888888888888776653
No 147
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.06 E-value=1.6e+02 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=31.8
Q ss_pred eEEEecCCeEEEecCCCcc----ChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 752 VHLVASEGLEAYLPLADMV----DISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 752 ~~~~~~~~~~~~~~l~~~i----d~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
+...+.+.-.+.+++...+ +++.-+.-|+++++.+++.++++++.+
T Consensus 68 v~~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l 117 (140)
T PRK03947 68 VKAKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEAL 117 (140)
T ss_pred EEEEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666665543 777778889999999999888887743
No 148
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.32 E-value=40 Score=34.64 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAP----EDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap----~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
-+..|+++|+|.|..--+.|-.-.++++| =||. .++-..-+++.++++.+.+.+-++++.|++
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisn----LKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~ 295 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISN----LKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRN 295 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhc----cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667888888888777777777777777 2443 334455677788888888888888888875
No 149
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=58.25 E-value=50 Score=36.45 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=43.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++.+.|+.|++.++.|+++-++| ++-...++++-+++|++.+.+|+.+.+..+.|++-
T Consensus 416 v~~edeirrlkrdm~klkq~l~R-----------N~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~e 473 (486)
T KOG2185|consen 416 VEYEDEIRRLKRDMLKLKQMLNR-----------NKGDLVVSEALQERLKEVRKALASLLAQEAALSNE 473 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56666666666666666666555 34456688889999999999999999998888763
No 150
>PLN02886 aminoacyl-tRNA ligase
Probab=58.09 E-value=12 Score=41.83 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCcEEEEeehhhh-hHHHHHHHHHhHh-hC---------------CCCceEEEE--eeeEECC-CC-CcccccCC---C
Q 003160 420 YPTTMLETGHDILF-FWVARMVMMGIEF-TG---------------SVPFSHVYL--HGLIRDS-QG-RKMSKTLG---N 475 (843)
Q Consensus 420 ~P~d~~~~G~Di~~-~W~~~~~~~~~~~-~~---------------~~Pf~~v~~--hg~v~d~-~G-~KMSKS~G---N 475 (843)
|-+|+...|.||.. .=++|-++-.+.. .+ ..| ..++. +..+... +| .|||||.. |
T Consensus 183 ~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P-~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s 261 (389)
T PLN02886 183 YQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVP-EALIPPAGARVMSLTDGTSKMSKSAPSDQS 261 (389)
T ss_pred cCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCC-eeccCcccceeeeCCCCCCcCCCCCCCCCC
Confidence 45677888999975 3344444433211 11 123 22321 2234444 34 69999995 5
Q ss_pred ccChhh
Q 003160 476 VIDPID 481 (843)
Q Consensus 476 vI~p~d 481 (843)
.|...|
T Consensus 262 ~I~L~D 267 (389)
T PLN02886 262 RINLLD 267 (389)
T ss_pred eEEecC
Confidence 776544
No 151
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.00 E-value=33 Score=29.45 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
-|+..+...|..++.++...+..+.. +++.+ ++-.+++++++++++..++.|+.|+++++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg-------i~~s~----eeq~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG-------IDRSV----EEQEEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-------ccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 36667777777777777776666544 44444 44556788999999999999999998764
No 152
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=57.23 E-value=30 Score=38.95 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=54.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
-|..+..+|+..++.+++..+.+.+.|++.=.-.-|--...+..+-+.-..++.++++++.++..++.|+.
T Consensus 38 ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 38 EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 46777778888888888888888888888744433445566777777778889999999999999888764
No 153
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=56.33 E-value=78 Score=26.18 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
.+..++.|++++.+-.+-.++.++.+. -|-++-..........+|.+...+++.+...|+.+..+
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~--~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLR--LYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888888888877763 22222111455666778899999999999998887654
No 154
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.29 E-value=34 Score=39.05 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 813 GVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 813 ~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..++|+++++++++.|+++++.++.
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3467777888888888887765543
No 155
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.72 E-value=47 Score=35.03 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
+-+.++..++++...++++|+++.+++..=.=--+--.+-+++.++++..++.+++.+++.|.+-
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444444444444443332111001112234444555555555555555554443
No 156
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.53 E-value=27 Score=41.43 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhccccc-CcCccccCchh-HHHHHHHHHHHHHHcCceee--CCcccccCC
Q 003160 55 WKEKYGGTITSQIKRLGASCD-WTRERFTLDEQ-LSRAVVEAFIRLHEKGLIYQ--GSYMVNWSP 115 (843)
Q Consensus 55 ~~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~-~~~~v~~~F~~L~~~GlIyr--~~~~v~w~p 115 (843)
.++.....|++.+.+||+.+| |. ...+. ++..+..+...|-++|++|. |...|.|.-
T Consensus 237 ~v~~~l~~~k~~l~~l~V~fD~~~----~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~ 297 (577)
T COG0018 237 FVDLSLEGIKETLDRLGVKFDVYD----SEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLK 297 (577)
T ss_pred HHHHHHHHHHHHHHHhCcccceee----ccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhh
Confidence 456778889999999999999 53 22222 33368899999999999999 666777753
No 157
>PLN02627 glutamyl-tRNA synthetase
Probab=55.20 E-value=38 Score=39.63 Aligned_cols=58 Identities=19% Similarity=0.120 Sum_probs=42.7
Q ss_pred EEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc---ccccccCHHHHH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA---GQDLSLSIERLT 512 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~---~~D~~f~~~~~~ 512 (843)
...-++++++.+|+||||..|. +...++.+. |-++|++=||+..+. +.+--|+.+.+.
T Consensus 279 ~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli 340 (535)
T PLN02627 279 RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELV 340 (535)
T ss_pred eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHH
Confidence 6677889999999999999865 466666664 889999999987554 223346665554
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.88 E-value=51 Score=34.76 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL-AFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l-~~l~~~ 838 (843)
+.++...++++++.+..+++.+.++..+-.=...=-..-+++-+.+++++++.+..-++.| +++|+|
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444222222233456677777888888887777766 344443
No 159
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=54.85 E-value=57 Score=26.90 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.+.-+..|+-+++..+..|+.++. +|-+-..++..++.++..+.+.|+.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND--------------VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678888888888888888877 777778888888888888888887776
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.51 E-value=58 Score=32.71 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++.++-.+++.++++++.+++.|. .|. +..|+.+++.++....+.+.+.+....+-.|..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~--~~~-~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE--KYS-ENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5777888888888888888888888 564 566778888889999999999998888877765
No 161
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=54.43 E-value=40 Score=41.39 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=50.0
Q ss_pred EEEEeeeEECCCCCcccccC-------CCcc--------ChhhHHH-hhChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTL-------GNVI--------DPIDTIK-EFGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~-------GNvI--------~p~dii~-~yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
.++--|++- ..|.||||++ |-+- +...+.+ -|-++|+|-|++..+. ..|..++++.+.+ ++
T Consensus 260 ~~~~f~rl~-l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 260 RQYEFARLA-LGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred ceeEEEEec-cCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCccCceecHHHHHHHHH
Confidence 455566664 6899999999 4332 2333433 3889999999999888 8899999999987 77
Q ss_pred HHHHHH
Q 003160 516 AFTNKL 521 (843)
Q Consensus 516 ~~~nkl 521 (843)
+.++..
T Consensus 339 ~~ld~~ 344 (771)
T PRK14703 339 DDLNRR 344 (771)
T ss_pred HHhccC
Confidence 777654
No 162
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=54.20 E-value=85 Score=25.81 Aligned_cols=63 Identities=19% Similarity=0.334 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
.++.|++++++=.+-+++.++.+.- | ++-++.+......++.+...+++.++..|..+.....
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~--~-~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQA--Y-STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H-CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--H-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3566777777777777777776651 1 1222237888999999999999999999999887554
No 163
>PRK11637 AmiB activator; Provisional
Probab=54.18 E-value=31 Score=39.50 Aligned_cols=23 Identities=0% Similarity=0.102 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
.++++.++++++.++++++.+++
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~ 68 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQ 68 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 164
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.65 E-value=37 Score=36.27 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 766 LADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 766 l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
+...+++..|-.+|.||.++|..+++++++-.--++- . ++.+..+++.+++-+.+..+++.++
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V--------~----E~vet~dv~~d~i~Kimnk~Re~vl 93 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHV--------C----EDVETNDVIYDKIVKIMNKMRELVL 93 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh--------h----hHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455788999999999999999999999764332222 2 1222234455566666666655444
No 165
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=52.93 E-value=52 Score=36.08 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++|+++++..+.....++....+++++.+-.--|-+++|.+-.++|..++.+...++..-+.|..
T Consensus 215 r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 215 RTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999888888887777654
No 166
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=52.78 E-value=2.2e+02 Score=27.33 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=32.2
Q ss_pred CceEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 750 QSVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 750 ~~~~~~~~~~~~~~~~l~~~----id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
..+...+.+.-.+-+++... .+.+.-++.|.|+++++.+.++++++.|
T Consensus 66 ~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l 117 (145)
T COG1730 66 LFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQAL 117 (145)
T ss_pred ceEEEEeccCceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443343334455555444 3777888999999999999998887754
No 167
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=52.70 E-value=28 Score=39.68 Aligned_cols=33 Identities=12% Similarity=0.368 Sum_probs=25.8
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
...+..+++..++..+++.++.+.+.+.+.+..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888888888887755
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.67 E-value=46 Score=31.99 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
..++.+|+..+++++.+++.++..++.-....++-..-+.....++...++++.++...+...+
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443333344444455555556666666666655554443
No 169
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=52.65 E-value=13 Score=41.30 Aligned_cols=51 Identities=31% Similarity=0.481 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhccccc-CcCccccCchhHHHHHHHHHHHHHHcCceeeCC
Q 003160 55 WKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGS 108 (843)
Q Consensus 55 ~~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~ 108 (843)
|.....+.++++++++|+.+| |..+ .+-.+...+..++.+|.++|++|+..
T Consensus 143 ~~~~~~~~~k~~l~~l~i~fDv~~~E---~Es~~~~~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 143 WQKYILEWSKETLQRLYIRFDVWFDE---SESFYSGKVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp HHHHHHHHHHHHHHHTT---SEEEEH---CHHHHTTHHHHHHHHHHCTTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCccc---chhhhhhHHHHHHHHHHhCCcEEecC
Confidence 444477788999999999999 7654 33346777899999999999999854
No 170
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=52.41 E-value=32 Score=38.79 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=52.6
Q ss_pred EEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 762 AYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 833 (843)
Q Consensus 762 ~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 833 (843)
.+++|+- +|+.+.+.+|+.+++++..++.+.+..|.- .|. .++.+.++.+++.+++..+..++
T Consensus 235 a~~~la~-l~~~e~~~~l~~~l~~~~~~~~r~~~~l~~------~~~--~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 235 AELPLAY-LDLDEYLKKLNQELAKLAAEIERVQEALKE------SPK--SEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred hhhhhhh-cCHHHHHHHHHHHHHHHHhHHHHHHHHhcc------Ccc--hhhhhhhHHHHHHHHHhhHHHHh
Confidence 3444544 799999999999999999999999998854 444 67888999999999999888877
No 171
>PRK11637 AmiB activator; Provisional
Probab=52.40 E-value=34 Score=39.21 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhHhcC
Q 003160 781 KRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 781 k~~~~~~~~~~~~~~kl~n 799 (843)
+++..++++++.++++|++
T Consensus 68 ~~~~~~~~~l~~l~~qi~~ 86 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQ 86 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 172
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.07 E-value=18 Score=32.54 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=39.8
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
...++.+.+...+..+++.++.+.+.+.+.+....=.....++++ ...++++.++++++..+++.+..+
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888888888887776654221111222222 233455555555555555555443
No 173
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.78 E-value=24 Score=40.31 Aligned_cols=68 Identities=16% Similarity=0.329 Sum_probs=38.7
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
...+.++++..++..+++.++++.+.+.+.+..-.-.....++++ .+.++++.++++++..+++.+..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888888888887754111000111222 22344555555555555554443
No 174
>PRK00736 hypothetical protein; Provisional
Probab=51.73 E-value=1.2e+02 Score=25.02 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.+.-+..|+-+++..+.-|+.++. +|-+-...+..++.++..+.+.|+.+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~--------------~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSD--------------QLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455678888888888888888877 666677777888888888877777654
No 175
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.31 E-value=85 Score=32.02 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
-....+.++++++++++.+++.+.+..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444567777777777777766665533
No 176
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.30 E-value=70 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
..++++++-.++.+++.++..+++.+.+..++
T Consensus 4 ~~~~kkkl~~RlrRi~GQv~gI~rMlEe~~~C 35 (89)
T COG1937 4 SIEEKKKLLNRLRRIEGQVRGIERMLEEDRDC 35 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 35789999999999999999999999999997
No 177
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=51.24 E-value=63 Score=31.28 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc-cCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPE----------------DVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~-kap~----------------~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
.++++.||+.+.+.|+...+-.+.+|+|..-.. .++. .+-.++..+|..++.+-++++-.++.
T Consensus 73 ~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKerL~y~ver 152 (153)
T PF08287_consen 73 AEKHLEKLQRREETLKAKCELQQGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKERLKYSVER 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888843332 3322 23355566777777777777776665
Q ss_pred H
Q 003160 835 L 835 (843)
Q Consensus 835 l 835 (843)
|
T Consensus 153 L 153 (153)
T PF08287_consen 153 L 153 (153)
T ss_pred C
Confidence 3
No 178
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.00 E-value=84 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
+..|..+|+.++++++++++.+++. .+.-.+++..+++..+.+-..|..-+.|+.+
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e--------------~~~L~~~~~~~~eDY~~L~~Im~RARkl~~~ 157 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKE--------------LEKLRQRLSTIEEDYQTLIDIMDRARKLAVV 157 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777777777764 3455566677777777777777777776643
No 179
>PLN02859 glutamine-tRNA ligase
Probab=50.87 E-value=21 Score=43.45 Aligned_cols=60 Identities=17% Similarity=0.015 Sum_probs=44.1
Q ss_pred EECCCCCcccccCCCcc---------------ChhhHHH-hhChhHHHHHHHhCCc-cccc-ccCHHHHHH-HHHHHHH
Q 003160 461 IRDSQGRKMSKTLGNVI---------------DPIDTIK-EFGADALRFTISLGTA-GQDL-SLSIERLTA-NKAFTNK 520 (843)
Q Consensus 461 v~d~~G~KMSKS~GNvI---------------~p~dii~-~yGaDalR~~l~~~~~-~~D~-~f~~~~~~~-~~~~~nk 520 (843)
.++.+|.||||+++... +...+.+ -|-++|+|=|++..+. ..|. .|+++.++. +++.+++
T Consensus 492 rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~~~e~i~~~~Le~~~r~~l~~ 570 (788)
T PLN02859 492 RLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRSDNSLIRMDRLEHHIREELNK 570 (788)
T ss_pred eECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCceecHHHHHhhCHHhhCC
Confidence 66899999999998752 3344444 3889999999998877 6666 799998855 4444443
No 180
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=50.80 E-value=30 Score=28.23 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+++++++++++++++++.+..-.=.=..|.=+-.+=.+-.+.-+++++.++..++.|..-
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~ 61 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888887766433333444444444445566677778888777777654
No 181
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=50.45 E-value=72 Score=27.90 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
.++.+++-++|.+++.++..+++.+.++.++
T Consensus 5 ~~~k~~ll~RL~RIeGQv~gI~~Miee~~~C 35 (90)
T PRK15039 5 IRDKQKLKARASKIQGQVVALKKMLDEPHEC 35 (90)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 4568889999999999999999999997765
No 182
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.38 E-value=1.1e+02 Score=25.42 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++-+.+|+-+++..+.-|+.++. +|-+-+..+..++.++..+...|+.++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~--------------~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNV--------------TVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556688899999999988888877 7777778888888888888888877654
No 183
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=50.26 E-value=44 Score=38.60 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCc---chhccCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSS---KFVEKAPED---VVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~---~f~~kap~~---vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.+++++|++++..++.+++++++.|..- .-..+.|++ ..++.++.+.++.++++++++.++.|++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777776664331 112222332 3344444555555666666665555554
No 184
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.16 E-value=1.1e+02 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
|+.+.+.+++.+++..++.+..++.. .+....+..++..++++++..+.=+-
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~--------------~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKR--------------DAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777663 22333445666666666666554443
No 185
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=49.71 E-value=2.1e+02 Score=26.27 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=30.7
Q ss_pred eEEEecCCeEEEecCC-Cc---cChHHHHHHHHHHHHHHHHHHHHHHhH
Q 003160 752 VHLVASEGLEAYLPLA-DM---VDISAEVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 752 ~~~~~~~~~~~~~~l~-~~---id~~~e~~rl~k~~~~~~~~~~~~~~k 796 (843)
+...+.++..++++++ |. .+.+.-+..++++++.++++++.+++.
T Consensus 61 ~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~ 109 (129)
T cd00890 61 VKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQ 109 (129)
T ss_pred EEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666777776 32 366666788888888888888888763
No 186
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=49.07 E-value=75 Score=27.38 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
++..++-++|.+++.++..+++.+.++.++
T Consensus 2 ~~k~~ll~RL~rIeGQv~gI~~Miee~~~C 31 (85)
T PF02583_consen 2 EDKKDLLNRLKRIEGQVRGIERMIEEDRDC 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTE-H
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 467889999999999999999999997776
No 187
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.98 E-value=95 Score=28.01 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+++.++.++......++.++.++.+ |+- +-+.+-+-.+++.+.++..+.+.+..+..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~------~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTR------DDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456788888888889999999998887 443 35666667777777777777777666654
No 188
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=48.96 E-value=59 Score=33.03 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=38.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
-++..|..+|..-|.+++.+++.+++.|.+ | ++++..|..+++++..+++.|..|+
T Consensus 51 ~ei~~eN~~L~epL~~a~~e~~eL~k~L~~--y---------~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 51 AEISQENKRLSEPLKKAEEEVEELRKQLKN--Y---------EKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--H---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999998886 3 3444555555555555555555443
No 189
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=48.65 E-value=87 Score=31.05 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
...-++-|+.+++.+..+++.++..|+-.+. +.-.--.-+-|..+.+..++|.+++..++.+...
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad--~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKAD--DVVSYQLLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666667777777666666655332 2222233677888999999999999999987764
No 190
>PRK00295 hypothetical protein; Provisional
Probab=48.40 E-value=1.5e+02 Score=24.45 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.+.-+.+|+-+++..+.-|+.++. +|-+-.+.+..++.++..+...|+.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~--------------~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALND--------------VLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345678888899988888888877 677777778888888888888877765
No 191
>PRK11352 regulator protein FrmR; Provisional
Probab=48.25 E-value=79 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
.+..++-++|.+++.++..+++.+.++.++
T Consensus 6 ~~k~~ll~RL~Ri~GQv~gi~~Mie~~~~C 35 (91)
T PRK11352 6 EEKKKVLTRVRRIRGQIDALERSLEGDAEC 35 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 467889999999999999999999998876
No 192
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=47.50 E-value=44 Score=39.75 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceeeCCcc
Q 003160 56 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYM 110 (843)
Q Consensus 56 ~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~ 110 (843)
++...+.+++.+.+||+.+||.. -...|...+..+..+|.++|++|+...-
T Consensus 233 ~~~~l~~~~~~~~~l~V~fD~~~----~es~~~~~~~~v~~~L~~~g~~~e~dGa 283 (562)
T PRK12451 233 RHESLKEFSRIYELLGVEFTNFQ----GEAFYNDLMEDFIGILEEHDLLEESEGA 283 (562)
T ss_pred HHHHHHHHHHHHHHcCCCceeec----chHhhhhhHHHHHHHHHHCCCEEecCCe
Confidence 46667788999999999999432 2234666678999999999999976543
No 193
>PLN02320 seryl-tRNA synthetase
Probab=47.36 E-value=35 Score=39.63 Aligned_cols=33 Identities=9% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
...+..+++..++..+++.++.+.+.+.+.+..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677888888999999999999998888865
No 194
>PLN02907 glutamate-tRNA ligase
Probab=47.05 E-value=63 Score=39.55 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=48.7
Q ss_pred EEEEeeeEECCCCCcccccC-------CCc--c-Ch-----hhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-HH
Q 003160 454 HVYLHGLIRDSQGRKMSKTL-------GNV--I-DP-----IDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-NK 515 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~-------GNv--I-~p-----~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~~ 515 (843)
.++-.|++ +.+|.||||++ |-+ - || ..+... |-++++|=|+...+. ..+..|+++.+.. |+
T Consensus 435 ~~~~f~~l-~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~~~l~~~nr 513 (722)
T PLN02907 435 HIWEFSRL-NFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEWDKLWTINK 513 (722)
T ss_pred eeEEEEEE-cCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccHHHHHHHHH
Confidence 45555555 69999999999 322 1 23 233332 889999999998887 8899999999987 66
Q ss_pred HHHHHH
Q 003160 516 AFTNKL 521 (843)
Q Consensus 516 ~~~nkl 521 (843)
+.++..
T Consensus 514 ~~id~~ 519 (722)
T PLN02907 514 KIIDPV 519 (722)
T ss_pred HHhccC
Confidence 666654
No 195
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=47.03 E-value=41 Score=39.09 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=68.9
Q ss_pred CCCcCcccccchHHHHHHH--HHcC-C---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc--------c
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEG-I---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE--------R 80 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g-~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~--------~ 80 (843)
|+|.=|-|-+-.. .-..+ ++.| . ..+|..++ .-...+.+.|.++|+.||+. |+.. |
T Consensus 13 PtG~lHiG~~rta-l~n~l~Ar~~~G~fiLRieDtD~~-------R~~~~~~~~i~~~L~wlGl~--~De~p~~~~~gpy 82 (476)
T PRK01406 13 PTGYLHIGGARTA-LFNWLFARHHGGKFILRIEDTDQE-------RSTEEAEEAILEGLKWLGLD--WDEGPDGGPYGPY 82 (476)
T ss_pred CCCcccHHHHHHH-HHHHHHHHHcCCEEEEEeCcCCCC-------CCChHHHHHHHHHHHHCCCC--CCCCCccCCCCce
Confidence 6799999976322 22222 4443 2 12222221 12356788999999999965 5432 5
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeC-----------------CcccccCCCCCcccCcccccccccCCeEEEEEEEec
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQG-----------------SYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVA 143 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~-----------------~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~ 143 (843)
+.++ +...-+....+|.++|+.|+- ..+..|+..|. -++..|+.-....|..+.++|++.
T Consensus 83 ~QS~--r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr-~~~~~~~~~~~~~g~~~~iR~k~p 159 (476)
T PRK01406 83 RQSE--RLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCR-DLTKEEVAARLAAGEPPVIRFKVP 159 (476)
T ss_pred ehhc--CHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCcccc-CCCHHHHHHHHhCCCCeeEEEEcC
Confidence 5433 334556777899999999962 12234555665 356666654444566667777764
Q ss_pred C
Q 003160 144 G 144 (843)
Q Consensus 144 ~ 144 (843)
+
T Consensus 160 ~ 160 (476)
T PRK01406 160 D 160 (476)
T ss_pred C
Confidence 3
No 196
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=46.93 E-value=56 Score=35.95 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVR----GVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv~----~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+++|++++...++++.-.++||.+ +.=.++-|.+|-. +.+.-.+.++.++.+++..|+++
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777776 3334677776643 33444455555555555555543
No 197
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.44 E-value=1.8e+02 Score=25.25 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE-----KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~-----kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++.|+.+|+++|.+=+.--.-+++-|..+...- .-|+. +.+.-+.++-+++++..++..+..|..
T Consensus 12 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~-~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 12 ALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKK-AKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888877777777888887754432 22332 334445567777777777777776654
No 198
>PRK04325 hypothetical protein; Provisional
Probab=46.19 E-value=1.4e+02 Score=25.01 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.+.-+..||-+++..+.-|+.++. +|-+-+..+..++.++..+.+.|+.+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~--------------vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNA--------------TVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445578889999999888888877 666777778888888888888777765
No 199
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=45.70 E-value=1.2e+02 Score=26.30 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA--PEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~ka--p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+..+..+...-..+...++++..+|.+-.-+... |-+... -..||...+.++..+.+.+..++.
T Consensus 18 ~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~ 85 (92)
T PF14712_consen 18 RLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888888888888765553333 323444 788888888888888888877764
No 200
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.66 E-value=64 Score=36.84 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcch-hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKF-VEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f-~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
...++++.|.++-+.+.+|-++++++.+|-+. ++.|=.....+..+..++++.++.+++..|.+|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888777333 2222222222333334444444444544444443
No 201
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=45.27 E-value=39 Score=38.99 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=51.1
Q ss_pred CcccC---CCCcCcccccchHHHHHHH--HHcC-C---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC-c
Q 003160 10 RPTLW---LPGTDHAGIATQLVVEKML--AAEG-I---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR-E 79 (843)
Q Consensus 10 ~~v~~---~~G~D~~Gl~~e~~vek~l--~~~g-~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r-~ 79 (843)
..+.| |+|.=|.|-+--. .-..+ ++.| . ..+|..++ .-..++.+.|.++|+.|| ++|+. .
T Consensus 10 v~tRFAPsPtG~LHiG~artA-l~N~~~Ar~~~G~fiLRiEDTD~~-------R~~~e~~~~I~~~L~WLG--l~wde~~ 79 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTA-LLNYLYARKYGGKFILRIEDTDPE-------RETPEAEDAILEDLEWLG--LDWDEGP 79 (472)
T ss_pred eEEEECcCCCCccchHHHHHH-HHHHHHHHHhCCEEEEEecCCCCC-------CCCHHHHHHHHHHHHhcC--CCCCCce
Confidence 44555 5799999987322 33322 4443 2 11222111 112467789999999999 56666 3
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
|+.+ ++-..-...-.+|.++|+.|.-
T Consensus 80 ~~QS--~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 80 YYQS--ERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred eehh--hhHHHHHHHHHHHHHCCCeEEe
Confidence 5443 3444445566788899998864
No 202
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=45.23 E-value=40 Score=35.64 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchh----------ccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV----------EKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~----------~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
++..+++.|+++++.-+.+++++.+...+..-. .-..++.+++|++...+|+.++.++
T Consensus 191 ~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 191 QLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777777777777776666664432 1144566677777777777666554
No 203
>PLN02678 seryl-tRNA synthetase
Probab=44.82 E-value=35 Score=39.20 Aligned_cols=68 Identities=13% Similarity=0.321 Sum_probs=38.6
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
...+.++++..++..+++.++.+.+.+.+.+..-.-.....++++ .+-++++.++++++..+++.|.+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677788888888888888888888887754111111112222 22344555555555555555443
No 204
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=44.51 E-value=1e+02 Score=33.94 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003160 779 LSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~ 795 (843)
+..+.+.++.++..+++
T Consensus 182 l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 182 LRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 205
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.15 E-value=92 Score=31.78 Aligned_cols=21 Identities=19% Similarity=0.615 Sum_probs=10.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYD 791 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~ 791 (843)
.+++|++.++.+++.+.++.+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344555555555555544433
No 206
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.08 E-value=61 Score=37.88 Aligned_cols=69 Identities=16% Similarity=0.334 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE---KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~---kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+++.++.++++++++|+.+++++...+..+--.+ .+-.+-++.-+.+|.+-..+.+.++..|+.++.|-
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777766665332222 23344556667778888888888888888888543
No 207
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=44.06 E-value=1.5e+02 Score=25.02 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC--cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS--SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n--~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+.+..+.+|.|+---|.=.|--++.+|.+ |.+...+..+-++ -+-....++.++...+..|.+..
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIE-LKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999983 3333333333332 23334445555555555554443
No 208
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.92 E-value=24 Score=38.92 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHHhHhh----C--CCCceEEEEeeeEECCCCCcccccCCCccChhh
Q 003160 420 YPTTMLETGHDILFFWVARMVMMGIEFT----G--SVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~~~~~----~--~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~d 481 (843)
|...+++.|.||.-. ++.|..+- . ..+| =++-.++++..|.|+-||-||.||.+-
T Consensus 226 ~g~~~QlGGsDQwGN-----itaG~dlI~ki~~~~~~vf--GlT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGN-----ITAGTDLIRKIMPIQAFVF--GLTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccc-----cchHHHHHHHhccccccee--eeeeeeEecCcchhhccCCCceEEecC
Confidence 457799999999642 12222221 1 2233 346678889999999999999998653
No 209
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=42.67 E-value=51 Score=30.36 Aligned_cols=29 Identities=38% Similarity=0.554 Sum_probs=25.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
-|++.|++|+.+-+++..++++.+..++.
T Consensus 31 ~~~~~E~~rl~~Al~~~~~eL~~l~~~~~ 59 (123)
T PF05524_consen 31 DDIEAEIERLEQALEKAREELEQLAERAE 59 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999988843
No 210
>PRK02119 hypothetical protein; Provisional
Probab=42.33 E-value=1.7e+02 Score=24.43 Aligned_cols=52 Identities=10% Similarity=0.156 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+.+.-+.+|+-+++..+.-|+.++. +|-+-++.+..++.++..+...|+.++
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~--------------~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQ--------------ALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555677888888888888888876 677777778888888888888877765
No 211
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.07 E-value=1.1e+02 Score=29.75 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhHhcC----cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 779 LSKRLSKMQSEYDGLVARLSS----SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n----~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
..++..++++|+.++.+.+++ +.|. .-.+.++|++.+++|++++++.+..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFA------kwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFA------KWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444 4553 2245677888888888887776654
No 212
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.88 E-value=74 Score=33.52 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.+.++..+...+..++..+++.+.+=..-.+-=+..++..++++++++.+++.++.....+.-
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444544444444433333444456677777777777777777766555544
No 213
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=41.61 E-value=1.1e+02 Score=31.97 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+..++++..+.+++..+++.++.++... .+. +++.-+++.+..++.++++++.++..|+.++.
T Consensus 20 ~~~a~l~~a~~~l~~a~~~~~r~~~L~~-~~~---~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (265)
T TIGR00999 20 KMAAELKVAQKRVELARKTYEREKKLFE-QGV---IPRQEFESAEYALEEAQAEVQAAKSELRSARE 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3446677788888888888888866444 333 56677788888999999999999988887654
No 214
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=41.38 E-value=2.9e+02 Score=25.45 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=31.3
Q ss_pred ceEEEecCCeEEEecCCCcc----ChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 751 SVHLVASEGLEAYLPLADMV----DISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 751 ~~~~~~~~~~~~~~~l~~~i----d~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
++...+.+.-.|.++++..+ +.++-++-++++++.+.+.++++++.+
T Consensus 59 ~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l 109 (126)
T TIGR00293 59 FVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEAL 109 (126)
T ss_pred EEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666543 666677888888888888888877643
No 215
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.38 E-value=61 Score=29.37 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=19.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
-|++.-+..|+++++.++..++++++
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek 88 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQR 88 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666778888888888777777765
No 216
>PRK04406 hypothetical protein; Provisional
Probab=41.04 E-value=1.8e+02 Score=24.48 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.+.-+..|+-+++..+.-|+.+++ +|-+-+..+..++.++..+...|+.+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~--------------~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELND--------------ALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455677788888888888888776 666777777888888888877777665
No 217
>PRK13694 hypothetical protein; Provisional
Probab=40.90 E-value=73 Score=27.12 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
-++||+.+.+.+...+.-+-......+|-.||=..||..-+..-.+.+++-.-++-.+..|
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~~er~E~EaiLe~Y~~AL 80 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDDDERAEEEAILDLYMDAL 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHh
Confidence 4688889999999999988889999999999999999876665555555544444444444
No 218
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.85 E-value=1.1e+02 Score=32.03 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE---KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~---kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
|++.+..+++.++.++...+++.+.+|++- +-. +|=..=+...+++...++.++..+...++.++.
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~ 124 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAV-KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK 124 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777431 111 111222334445555555555555555555544
No 219
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=40.40 E-value=45 Score=34.84 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=50.0
Q ss_pred ccCCCCcCcccccchHHHHHHH-HHcCC----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCccccCchh
Q 003160 12 TLWLPGTDHAGIATQLVVEKML-AAEGI----KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQ 86 (843)
Q Consensus 12 v~~~~G~D~~Gl~~e~~vek~l-~~~g~----~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~ 86 (843)
..=|.|.=|.|=.-...+--.+ +..|. ..+|...+.. .....+.+.|.++|+.||+ +|+..++.+ +
T Consensus 7 aPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD~~r~-----~~~~~~~~~i~~dL~wLGl--~~d~~~~qS--~ 77 (240)
T cd09287 7 APNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTK-----RPDPEAYDMIPEDLEWLGV--KWDEVVIAS--D 77 (240)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCCCCcc-----cchHHHHHHHHHHHHHcCC--CCCCccchh--c
Confidence 3346788888876444333222 22221 1222222110 1223455569999999998 776655543 3
Q ss_pred HHHHHHHHHHHHHHcCceee
Q 003160 87 LSRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 87 ~~~~v~~~F~~L~~~GlIyr 106 (843)
+...-+....+|.++|+.|.
T Consensus 78 r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 78 RIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred cHHHHHHHHHHHHHcCCccc
Confidence 44445566788999999997
No 220
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=40.25 E-value=48 Score=39.54 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhccccc-CcCccccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 56 KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 56 ~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
++...+.+++.+++||+.+| |..+- +-.+...+..++.+|.++|++|.+
T Consensus 234 ~~~~l~~~~~~~~~l~V~fD~~~~E~---e~~~~~~~~~v~~~L~~~g~~~~~ 283 (566)
T TIGR00456 234 VEYSLEGIKETLARLNIHFDSFVWEG---ESVKNGMVPKVLEDLKEKGLVVED 283 (566)
T ss_pred HHHHHHHHHHHHHHcCCceeeeeccc---cccccccHHHHHHHHHHCCCEEEc
Confidence 46677889999999999999 65221 111344578888999999999976
No 221
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=39.99 E-value=2.9e+02 Score=25.05 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=25.4
Q ss_pred CCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 758 EGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 758 ~~~~~~~~l~~~----id~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
+.-.+++++... .+.+.-++.++++++.+++.++++++
T Consensus 57 ~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~ 98 (120)
T PF02996_consen 57 DTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEK 98 (120)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444433 36677788888888888888887766
No 222
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=39.59 E-value=1.1e+02 Score=23.05 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=20.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHH
Q 003160 804 EKAPEDVVRGVQEKAAEAEEKI 825 (843)
Q Consensus 804 ~kap~~vv~~~~~kl~~~~~~l 825 (843)
+||++++++.+=.+|-++++++
T Consensus 20 ~KA~k~~i~~eV~~LL~LKaql 41 (45)
T cd00938 20 EKASKEQIAEEVAKLLELKAQL 41 (45)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999998876
No 223
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=39.58 E-value=1.7e+02 Score=28.06 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
++++.+..++++...+++++++.+++.... ...+++..++....+.+...++...
T Consensus 41 l~~~~~~~~~~l~~~~~el~~~~~~l~~~~--~~ls~~~~~~~~~~l~~~~~~l~~~ 95 (158)
T PF03938_consen 41 LQEKFKALQKELQAKQKELQKLQQKLQSQK--ATLSEEERQKRQQELQQKEQELQQF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777766642 2444444444444444444444433
No 224
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.57 E-value=1.1e+02 Score=37.12 Aligned_cols=59 Identities=17% Similarity=0.300 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPE-DVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~-~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
..+++..+.+++.+++.+++.++++|+. ||. +.+++-.+++.+++.++.+++..+..+.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~------~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKIST------IPSEEQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999875 332 4555555666666665555555554443
No 225
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=39.53 E-value=1.8e+02 Score=26.33 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEK------AAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~k------l~~~~~~l~~~~~~l~~l~ 836 (843)
.-+.+|..+++.+.+++......+.+.+....-+.+.-..+.++ +...+.+|..|..+|..+.
T Consensus 8 ~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~ 76 (110)
T TIGR02420 8 HFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIE 76 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888888888888888777766433222222222222221 1233566778888888775
No 226
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=39.40 E-value=52 Score=35.64 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=53.6
Q ss_pred cCCCcccC---CCCcCcccccchHHHHH-HHHHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-
Q 003160 7 MKGRPTLW---LPGTDHAGIATQLVVEK-MLAAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT- 77 (843)
Q Consensus 7 m~G~~v~~---~~G~D~~Gl~~e~~vek-~l~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~- 77 (843)
|..+.+.| |+|.=|.|-..-...-- .++.. |. -.+|.... .-..++.+.|.++|+.||+ +|+
T Consensus 3 ~~~v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~~-------R~~~~~~~~I~~dL~wlGl--~wDe 73 (299)
T PRK05710 3 MTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPP-------REVPGAADAILADLEWLGL--HWDG 73 (299)
T ss_pred CCceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCCC-------ccchHHHHHHHHHHHHCCC--CCCC
Confidence 33344445 67999999874332222 12333 32 12222211 1224677899999999996 555
Q ss_pred CccccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 78 RERFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 78 r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
..|+.++ +...-+.+..+|.++|++|.-
T Consensus 74 ~~~~QS~--r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 74 PVLYQSQ--RHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred CceEeec--cHHHHHHHHHHHHHCCCceec
Confidence 3555443 445567778899999999863
No 227
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.39 E-value=80 Score=31.68 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEAE 822 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~~ 822 (843)
+-+-|..||+++|+.|+.++.+.++...+ .+... .-..+|..+=+.|-+|+
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~-~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAESRRSDTD-SKPALVKREFEQLLDYK 144 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCc-chHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998887 33322 22345555545554443
No 228
>PRK09343 prefoldin subunit beta; Provisional
Probab=39.26 E-value=72 Score=29.54 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=32.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 829 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 829 (843)
.|.+.-++.++++++.++.+|++++++ .+.-++++.+++.++.++-
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq--------------~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQ--------------EKKLREKLKELQAKINEML 112 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 377878899999999999888888773 3344555566655555443
No 229
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=39.24 E-value=64 Score=37.43 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred cCCCCcCcccccchHHHH-HHHHHcC-C---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-CccccCchh
Q 003160 13 LWLPGTDHAGIATQLVVE-KMLAAEG-I---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWT-RERFTLDEQ 86 (843)
Q Consensus 13 ~~~~G~D~~Gl~~e~~ve-k~l~~~g-~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~-r~~~T~d~~ 86 (843)
.=|+|.=|-|-+--.-.- -.+++.| . ..+|..++. -...+.+.|.++|+.||+ +|+ .+|+.++.
T Consensus 8 PsPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDtD~~R-------~~~~~~~~i~~~L~wlGl--~~de~~~~QS~r- 77 (470)
T TIGR00464 8 PSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLER-------NIEEAEEAILEGLKWLGI--SWDEGPYYQSQR- 77 (470)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCcc-------CChHHHHHHHHHHHHCCC--CCCCCeeehhCC-
Confidence 336799998876322221 1224443 2 122222221 235677889999999996 555 45665442
Q ss_pred HHHHHHHHHHHHHHcCceeeC------------------CcccccCCCCCcccCcccccccccCCeEEEEEEEec
Q 003160 87 LSRAVVEAFIRLHEKGLIYQG------------------SYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVA 143 (843)
Q Consensus 87 ~~~~v~~~F~~L~~~GlIyr~------------------~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~ 143 (843)
...-+.+..+|.++|+.|+- ..| .|...|.. ++..|+.-....|..+.++|++.
T Consensus 78 -~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~-~y~~~cr~-l~~~~~~~~~~~g~~~~iR~k~~ 149 (470)
T TIGR00464 78 -LDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETP-RYDGRCRN-LHEEEIENKLAKGIPPVVRFKIP 149 (470)
T ss_pred -HHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCC-CCCCCccc-CCHHHHHhHHhcCCCceEEEEcC
Confidence 23335667889999999942 222 35555543 55555533333344556666664
No 230
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.03 E-value=82 Score=29.38 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 778 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 778 rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.|+.-..+|.+.|+++..||..-.=++++=.+-|.+.++.+++...+++.++.....|..
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666665544444444444455555555555555555555544443
No 231
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=38.95 E-value=98 Score=30.71 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCc
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSS 800 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~ 800 (843)
.+.+.+..+.++++.++++++.+|+.+
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~e 99 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREE 99 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666664
No 232
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.67 E-value=1.5e+02 Score=28.74 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
-++|.+.|+.+|.|++.||..+++-|.
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~ 53 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLA 53 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988443
No 233
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=38.49 E-value=89 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
+|.+.|+++-+++|..-..+.+|++.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKlee 29 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEE 29 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 234
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=38.21 E-value=1.3e+02 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 804 EKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 804 ~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
++|++++++.+=.+|-++.+++..+
T Consensus 18 ~ka~k~~i~~eV~~LL~LK~~~k~~ 42 (45)
T cd00939 18 SKADKSVWQPEVNKLLDLKKQLALA 42 (45)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999998765
No 235
>PLN02286 arginine-tRNA ligase
Probab=37.88 E-value=74 Score=37.99 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhccccc-CcCccccCchhHHHHHHHHHHHHHHcCceeeCCc
Q 003160 56 KEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY 109 (843)
Q Consensus 56 ~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~ 109 (843)
.+.....+++.+.+||+.+| |.. ..|...+..+...|.++|++|+...
T Consensus 238 ~~~~~~~~~~~y~~l~V~fd~~ge------s~y~~~~~~vi~~L~~~g~~~e~dG 286 (576)
T PLN02286 238 CEISRREFEKVYQRLRVELEEKGE------SFYNPYIPGVIEELESKGLVVESDG 286 (576)
T ss_pred HHHHHHHHHHHHHHhCCeeeecCc------hhhhhhHHHHHHHHHHCCCEEeeCC
Confidence 45566778889999999999 332 2355667899999999999997654
No 236
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.87 E-value=1.4e+02 Score=32.40 Aligned_cols=62 Identities=16% Similarity=0.312 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV------RGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv------~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
...+.++.++++++.++.+++.++..+.+++... ...++ ....++++++..+|+..+..|++
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~--~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE--NGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888878765432 12222 23444555544444444444433
No 237
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.52 E-value=59 Score=27.14 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=23.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
.....+++.+++++++++++.+.++..++.
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888776654
No 238
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=37.25 E-value=92 Score=35.89 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..|+..|+.+..+|+.+|++++.|+.. =+..+.+++..|.+++.+++..+.+++++.+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEe-------lk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEE-------LKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345666777777777777777665532 2235666777788888888888888888765
No 239
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.14 E-value=1.6e+02 Score=26.00 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=24.6
Q ss_pred chhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 801 KFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 801 ~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
-|+....+++.+.-+++.+.+++++.++++.++.+..
T Consensus 54 ~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 54 MFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666667777777777777777766666665554
No 240
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=36.99 E-value=1.4e+02 Score=28.90 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.....+|++++.+++++++++..++ ..++.+-........-+++..++..+.++...+..|..
T Consensus 6 Lk~~~~~L~~~~~~le~~i~~~~~~~--k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~ 69 (171)
T PF03357_consen 6 LKKTIRRLEKQIKRLEKKIKKLEKKA--KKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLES 69 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHH--HHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777777777766655 33444444333333333444444444444444444443
No 241
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.81 E-value=3.4e+02 Score=25.04 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=25.9
Q ss_pred EecCCeEEEecCCCcc----ChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 755 VASEGLEAYLPLADMV----DISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 755 ~~~~~~~~~~~l~~~i----d~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
.+.+.-.+.+++.+.+ +++.-+.-++++++.+++.++.+++
T Consensus 64 ~i~~~~~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~ 108 (129)
T cd00584 64 KVKDTDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQK 108 (129)
T ss_pred EeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666665543 5555667777777777777777665
No 242
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=36.80 E-value=1.3e+02 Score=33.54 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
++++|.+++++++++.+++.+ -+++.++.|+.+..+|+.+.++.+-++.++.+
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~--------------~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~ 154 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQ--------------ENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGL 154 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCC
Confidence 455666666666666666655 46677788889999999999988888886643
No 243
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=36.45 E-value=1.8e+02 Score=27.33 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+.+.+.+++.++..|+-+..++.+..+--+- ...+.+...-..+.++..++...+...++.+..|
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~~~~~~--~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEIKKQNA--QQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455667777777777777777665542111 3455666666666677777777777777777664
No 244
>PRK00846 hypothetical protein; Provisional
Probab=36.42 E-value=2.7e+02 Score=23.66 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.+.-+..|+-+++..+.-|+.++. +|-+-...+..++.++..+...|++++.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~--------------~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSE--------------ALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556678888888888888888876 6666677777888888888887777653
No 245
>PRK06798 fliD flagellar capping protein; Validated
Probab=36.00 E-value=92 Score=35.82 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
.....|++++..+++++++++.+|.. ..+.-+++...++..+.+++.+...|.+|.-
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~----------~e~~l~~qf~ale~~ms~lnsQ~s~l~~~~~ 435 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQ----------KQDNIVDKYQKLESTLAALDSQLKTIKAMTK 435 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566777777777777777777653 5566778889999999999998888888753
No 246
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.89 E-value=1e+02 Score=29.43 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC-------cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS-------SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n-------~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.++.++..|++++..++.++++++..|.. ..-... -.+.-..++..++.+|+.....|...
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae~~L~e~ 99 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAEKKLKET 99 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555543 222111 12244555566666666555555443
No 247
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=35.65 E-value=66 Score=35.18 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 57 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 57 ~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
.++.+.|.++|+.||+..| ..+|+. .++...-+.+..+|.++|++|.-
T Consensus 50 ~~~~~~i~~~L~wlGl~~D-~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 50 PEFYDAILEDLRWLGLEWD-YGPYYQ--SDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp HHHHHHHHHHHHHHT---S-TCEEEG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHhheeEEEEecC-CeEEeH--HHHHHHHHHHHHHHhhcCCCccc
Confidence 4567889999999997777 244444 34445556677789999999863
No 248
>PHA00728 hypothetical protein
Probab=35.52 E-value=56 Score=29.57 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcc
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSK 801 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~ 801 (843)
..|++.|.|+-+.+.+.++.++..++|+.
T Consensus 4 ~teveql~keneelkkkla~leal~nn~~ 32 (151)
T PHA00728 4 LTEVEQLKKENEELKKKLAELEALMNNES 32 (151)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHcCCC
Confidence 35788999999999999999999999964
No 249
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=34.91 E-value=1.4e+02 Score=27.33 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 827 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~ 827 (843)
+...+++..+.++...+.++...+.+ -.++.|.+.+.||++.+.+|..
T Consensus 67 e~q~ki~~~~~kV~ere~eL~eA~~~---------G~~~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKEAQAK---------GDSDKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHHhh
Confidence 56677777888888888888887763 5568899999999999998864
No 250
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.77 E-value=90 Score=30.62 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
++..++..|+++...++.++..+.+.+.++.-. ..+++.+++.++++++|+.++.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~-----~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELR-----EEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666666665542 3444445555555555555543
No 251
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.76 E-value=1.7e+02 Score=34.16 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+..|+++-+.++++++++.+.|.+++.+.+|- +++ |++......+++.++.+++..+..|.+
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS---~~d-ve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQIELQGIS---GED-VERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888887662 333 333333344455555555555554443
No 252
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=34.60 E-value=18 Score=38.19 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=34.5
Q ss_pred cCCCcEEEEeehhhh-hHHHHHHHHHhHhhCCCCceEEEEeeeEECCC-CCcccccCCC
Q 003160 419 FYPTTMLETGHDILF-FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGN 475 (843)
Q Consensus 419 ~~P~d~~~~G~Di~~-~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-G~KMSKS~GN 475 (843)
+.-+|..+.|-||-. |-+++-..-.+.. +. +-.+.|.||-... |.|||+|--|
T Consensus 175 ~L~vD~qfgGvDQRKIf~~A~eylp~l~y--kK--rihLmnpMvPGL~q~~KMSsSd~~ 229 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFVLAEEYLPDLGY--KK--RIHLMNPMVPGLAQGEKMSSSDPL 229 (360)
T ss_pred HHhhhHHhcCccHHHHHHHHHHhhhhhCc--cc--ceeecCCCCccccccCccccCCcc
Confidence 346899999999964 3344433322222 11 3567888887666 9999999544
No 253
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=34.27 E-value=1.9e+02 Score=31.13 Aligned_cols=58 Identities=10% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+..++.+++.+++++++.++...+ ..+++.-.+..+.+++.++++++..+..|+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~r~~~L~~~----~~~s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 130 (322)
T TIGR01730 73 LAAAEAQLELAQRSFERAERLVKR----NAVSQADLDDAKAAVEAAQADLEAAKASLASAQL 130 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666665544433 2355666777777788888888877777777665
No 254
>PLN02627 glutamyl-tRNA synthetase
Probab=33.95 E-value=91 Score=36.57 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCcCcccccchHHHHHHH--HHcCC----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC---------c
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEGI----KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR---------E 79 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g~----~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r---------~ 79 (843)
|+|.=|-|-+-. ..-..+ ++.|- ..+|..++. -...+.+.|.++|+.||+ ||+. +
T Consensus 54 PTG~LHiG~aRt-AL~n~l~Ar~~gG~fiLRIEDTD~~R-------~~~e~~~~I~~~L~WLGl--~wDegp~~gg~~gp 123 (535)
T PLN02627 54 PTGNLHVGGART-ALFNYLFARSKGGKFVLRIEDTDLAR-------STKESEEAVLRDLKWLGL--DWDEGPDVGGEYGP 123 (535)
T ss_pred CCCCccHHHHHH-HHHHHHHHHHhCCEEEEEeCcCCCCC-------CChHHHHHHHHHHHHcCC--CCCcCcccCCCCCC
Confidence 679999887622 222222 34432 122222221 235678899999999996 5553 2
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeC-----------------CcccccCCCCCcccCcccccccccCCeEEEEEEEe
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQG-----------------SYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRV 142 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~-----------------~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~ 142 (843)
|+-++ +...-..+..+|.++|+.|+- ..+-.|+-.|. -++..|+......+.-..++|++
T Consensus 124 y~QSe--R~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr-~l~~ee~~~~~~~g~~~~iR~k~ 200 (535)
T PLN02627 124 YRQSE--RNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWA-TASDEEVQAELAKGTPYTYRFRV 200 (535)
T ss_pred eeeec--cHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccc-cCCHHHHHHHHhCCCCceEEEEc
Confidence 44333 234456677899999999951 12234555564 35555554333345555677766
Q ss_pred c
Q 003160 143 A 143 (843)
Q Consensus 143 ~ 143 (843)
.
T Consensus 201 p 201 (535)
T PLN02627 201 P 201 (535)
T ss_pred C
Confidence 4
No 255
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.65 E-value=1.1e+02 Score=25.65 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 833 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 833 (843)
-++||+.+++.+...+..+-+-....||-.|+=..||..-+..-++.+++-.-+.-.+.
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~~~r~E~eail~~Y~~ 70 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDPDEREEEEAILDLYMS 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCHhHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999997766555554444333333333
No 256
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=33.46 E-value=1.2e+02 Score=32.75 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..|++++.+++.+...+++.|..+... +|..-+.++..++.+....+..|..|+.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~------~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEY------LVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 568888999999999999888876643 6677777777776666666666665554
No 257
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.19 E-value=2e+02 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=28.4
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 802 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 802 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
|+.+-.++.++--++++..+++.++++++.|+.+++-
T Consensus 87 ~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 123 (140)
T PRK03947 87 SAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASR 123 (140)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888888888888888777653
No 258
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.11 E-value=2.9e+02 Score=23.11 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003160 774 AEVQRLSKRLSKMQSE 789 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~ 789 (843)
..|+.|.++-++|.+.
T Consensus 12 e~Ia~L~eEGekLSk~ 27 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKK 27 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 259
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.65 E-value=1.9e+02 Score=22.79 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003160 814 VQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 814 ~~~kl~~~~~~l~~~~~~l~~l 835 (843)
-|+..+++.+.++++++.+++|
T Consensus 19 vk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555443
No 260
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.52 E-value=2e+02 Score=30.48 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
..|++.+..++++.++++..++.++ .+.+.+|.+++.+..++.+.+..++..
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i--------------~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERI--------------TEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666555543 677888888888888888887777653
No 261
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.36 E-value=2.2e+02 Score=25.10 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
|.+.-+..|+++++.++++++++++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~ 83 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEK 83 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777887777777777766
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=32.13 E-value=68 Score=34.87 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 780 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 780 ~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
+.++..+|.|+++.++ +||-++.+-.-+.||++++.|+++=
T Consensus 5 eEkIk~iEeeia~tpk--------nKaTe~hig~lKaklA~Lr~El~~~ 45 (365)
T COG1163 5 EEKIKAIEEEIARTPK--------NKATEHHIGLLKAKLAELREELEKR 45 (365)
T ss_pred HHHHHHHHHHHHhccc--------chhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4556666666666666 7999999999999999999999873
No 263
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=31.98 E-value=1.1e+02 Score=35.46 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=45.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSS-------KFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~-------~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
-++.+++++++++++++++.+.++++.-... .-.. .=.+-..+..++++++++++..+++.++..
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLK-KLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999999999999999888732110 1111 112233556677888888888999888887
No 264
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=31.58 E-value=2.2e+02 Score=31.82 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+++|++++...++..++-.+-+++.+.+-.=..+.-.+-..+.+..+..|+..|..+...|..|..++
T Consensus 205 l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L 272 (379)
T PF04518_consen 205 LEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLL 272 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666655555555555555554444577778888888999999999999999998888754
No 265
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=31.47 E-value=2.4e+02 Score=22.32 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 780 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 780 ~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
+.++...-..+-.+.. ++|+.+.+..+=++|-+++++++.+
T Consensus 2 ~~~I~~QG~~VR~LKa--------~ka~k~~i~~aV~~Ll~LK~~~~~~ 42 (56)
T PF00458_consen 2 EAQIAAQGDKVRKLKA--------EKADKEEIDAAVAKLLELKAELKEL 42 (56)
T ss_dssp HHHHHHHHHHHHHHHH--------TT--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555554 5899999999999999999988765
No 266
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.43 E-value=1.4e+02 Score=27.08 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 780 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 780 ~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
-+.+..+.-.++.+...|+...--....++..+.-++++++++.+++.++..++.|..++.
T Consensus 50 I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (113)
T cd01109 50 IKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDYKID 110 (113)
T ss_pred HHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555432212234677888889999999999999999998887664
No 267
>PHA02629 A-type inclusion body protein; Provisional
Probab=31.43 E-value=2e+02 Score=21.95 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=36.9
Q ss_pred HHHHHhHhcCcch--hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 790 YDGLVARLSSSKF--VEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 790 ~~~~~~kl~n~~f--~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
|+.+++||.+-+- -.+.-..+-+=||+.++-++++|.+-.+.++.|...+.
T Consensus 5 iadle~klrd~gng~~gngc~s~c~ferk~iavleaelr~~metik~lekf~e 57 (61)
T PHA02629 5 IADLEKKLRDGGNGNGGNGCTSSCEFERKIIAVLEAELRKSMETIKALEKFME 57 (61)
T ss_pred HHHHHHHHHccCCCCCCCCccchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666655322 12334567888999999999999999999888887653
No 268
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=31.39 E-value=2.5e+02 Score=24.53 Aligned_cols=63 Identities=22% Similarity=0.148 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKIN----LTKNRLAFLRST 838 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~----~~~~~l~~l~~~ 838 (843)
-+.||.|+..-+++|+..-++++..=.-- .+.+..+.+.++-|.+.+.-+- +|..++..|+.+
T Consensus 8 ~vkRL~KE~~~Y~kE~~~q~~rle~~k~~-~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~ 74 (90)
T PF02970_consen 8 VVKRLLKEEASYEKEVEEQEARLEKMKAE-GEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEF 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46789999999998888888877654432 3477777777777777765543 344444555544
No 269
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=31.06 E-value=2.5e+02 Score=30.73 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 781 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 781 k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
++..+++.+++..+..|+++ -.++..+..++.+.++++++..+++.|+.|
T Consensus 53 ~~~~~~~~~l~~a~~~l~~~-----~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 53 REYKKAQEDLEDAKEMLAEE-----KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777764 467889999999999999999999988765
No 270
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.87 E-value=1.9e+02 Score=31.44 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~k 796 (843)
+.++-+.|.+++++.++++++.+++.
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt 240 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRT 240 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888999999998888888653
No 271
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.66 E-value=2.1e+02 Score=28.73 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
.++.+++++++..+++.+...+.-.. ..=..+.-++-+++-++++++.+++++.++++.+.+.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554433221111 0001233344555556666666666666666666654
No 272
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=30.57 E-value=89 Score=34.19 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=31.7
Q ss_pred CcEEEEeehhhhh-HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCcc
Q 003160 422 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVI 477 (843)
Q Consensus 422 ~d~~~~G~Di~~~-W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI 477 (843)
.+..+=|.|.+.. ..+..+.-.+.+ ..| ...-|.++++.+|+|+||+.|-..
T Consensus 200 ITHViRG~D~l~~t~~Q~~L~~~Lg~--~~P--~~~H~pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 200 ITHVIRGEDLLSSTPRQILLYEALGW--PPP--PYAHLPLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp -SEEEEEGGGTTCHHHHHHHHHHCTS--SS---EEEEEEEEEETTSSBSSTTCSHHB
T ss_pred cCeEEEccccccccHHHHHHHHHhCC--CCc--ceEeeeeeecCCCcEechhhcccc
Confidence 3455568888753 333333333322 223 455568889999999999988764
No 273
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=30.05 E-value=94 Score=36.63 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 57 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 57 ~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
.++.+.|.++|+.||+. |+..+++ ..|.........+|.++|+.|.-
T Consensus 100 ~e~~~~I~~dL~wLGi~--~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 100 QVYIDAIMEMVKWMGWK--PDWVTFS--SDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred hHHHHHHHHHHHHcCCC--CCCCCcC--chhHHHHHHHHHHHHHcCCEEEc
Confidence 56788999999999965 5444433 44444555666789999999975
No 274
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.89 E-value=92 Score=37.76 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..++++++++++++|+++++++.. +.-. ..|+-..+.+.++++++.++++++++.|+.+-.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKL-GDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888899999999998866 3322 234333333455788888888888888776643
No 275
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.87 E-value=2.8e+02 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
.++++|+++.+.+..||-++..
T Consensus 37 ~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 37 EELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 276
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.79 E-value=79 Score=33.00 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=51.7
Q ss_pred ccCCCCcCcccccchHHHHH-HHHH-cCC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCccccCchh
Q 003160 12 TLWLPGTDHAGIATQLVVEK-MLAA-EGI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQ 86 (843)
Q Consensus 12 v~~~~G~D~~Gl~~e~~vek-~l~~-~g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~ 86 (843)
..=|+|.=|.|-..-...-- .++. .|. ..+|..++. -...+.+.|.++|+.||+..| ..++. .+
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDtD~~R-------~~~~~~~~I~~dL~wlGl~wD--~~~~Q--S~ 75 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEK-------EEEEYVDSIKEDVKWLGIKPY--KVTYA--SD 75 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCCCCcc-------cchHHHHHHHHHHHHcCCCCC--Cceec--cc
Confidence 33467999999864332221 1233 332 223332221 234677889999999997555 55443 34
Q ss_pred HHHHHHHHHHHHHHcCceee
Q 003160 87 LSRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 87 ~~~~v~~~F~~L~~~GlIyr 106 (843)
+...-+....+|.++|++|.
T Consensus 76 r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 76 YFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CHHHHHHHHHHHHHcCCeec
Confidence 45566778889999999999
No 277
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.76 E-value=1.3e+02 Score=26.79 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+...++++.++++++|++.|...|=.+... -|..++..-..++.+...+++.|+.-
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~------MVa~ar~e~~~~e~k~~~le~~l~e~ 63 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANK------MVADARRERAALEEKNEQLEKQLKEK 63 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999988554443 44555544444444444444444433
No 278
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.61 E-value=1e+02 Score=27.58 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhh
Q 003160 810 VVRGVQEKAAEAEEKINL----TKNRLAFLRST 838 (843)
Q Consensus 810 vv~~~~~kl~~~~~~l~~----~~~~l~~l~~~ 838 (843)
+.+.++++|..+++++++ -++.|++|++-
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666 56666666543
No 279
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=29.36 E-value=84 Score=34.05 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=28.6
Q ss_pred EEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCC
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 499 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~ 499 (843)
...-++++++.+|+||||+.|..- ..+ +.+-+. +..+++..+
T Consensus 222 ~y~H~pll~~~~g~kLSKr~~~~~-i~~--~g~~p~-l~~~l~~lG 263 (299)
T PRK05710 222 RYLHLPLVLNADGQKLSKQNGAPA-LDA--AGPLPV-LAAALRFLG 263 (299)
T ss_pred eEEEeecccCCCCCcccccCCccc-hhh--cCcCHH-HHHHHHHcC
Confidence 555668999999999999987652 222 455555 566665543
No 280
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=29.14 E-value=1.8e+02 Score=26.67 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 786 MQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 786 ~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
+.++|-.++.-|+.+ .-|++|..+.+..|+.++.+++.-+.
T Consensus 2 lK~riRdieRLL~r~----~Lp~~vR~~~Er~L~~L~~~l~~~~~ 42 (114)
T PF10153_consen 2 LKKRIRDIERLLKRK----DLPADVRVEKERELEALKRELEEAER 42 (114)
T ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776 77888888888888888888776544
No 281
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.11 E-value=1.5e+02 Score=30.99 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
|+--+..++.+++++..+|+|-.--..+=.+.++..+..|+..+++++.+
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666676655544555555555555555555555444
No 282
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.00 E-value=35 Score=39.22 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=18.8
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhH
Q 003160 768 DMVDISAEVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 768 ~~id~~~e~~rl~k~~~~~~~~~~~~~~k 796 (843)
..+|..++++.|+||+++|+++++.++++
T Consensus 25 ~~~~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 25 DDIDLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34566667777777777777776644443
No 283
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.95 E-value=2.1e+02 Score=28.27 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
-+..--++.|+++++...+....+.....|..=-..--++..++-..++.-++++++.++..|+.++
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555556677777777777777776665554333333334444444555555555555555555554
No 284
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=28.79 E-value=88 Score=36.58 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCcCcccccchHHHHH-HHHHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCccccCchhHHH
Q 003160 15 LPGTDHAGIATQLVVEK-MLAAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLSR 89 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek-~l~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~ 89 (843)
|.|.=|.|=+--+..-- .+++. |. ..+|..++. -..++.+.|.++|+.||+. |+..|++. +|-.
T Consensus 20 PtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDTDp~R-------~~~e~~~~I~~dL~WLGl~--wD~~~~qS--dr~~ 88 (523)
T PLN03233 20 PSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSK-------EKAEFEESIIEDLGKIEIK--PDSVSFTS--DYFE 88 (523)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCCc-------cchHHHHHHHHHHHHhCCC--CCCCcccc--ccHH
Confidence 56999999873322211 12333 32 122222221 2356788999999999975 55655553 4456
Q ss_pred HHHHHHHHHHHcCceeeC
Q 003160 90 AVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 90 ~v~~~F~~L~~~GlIyr~ 107 (843)
.-+....+|.++|+.|.-
T Consensus 89 ~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 89 PIRCYAIILIEEGLAYMD 106 (523)
T ss_pred HHHHHHHHHHHcCCeEec
Confidence 667788999999999975
No 285
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=28.74 E-value=83 Score=35.97 Aligned_cols=80 Identities=10% Similarity=0.150 Sum_probs=49.4
Q ss_pred CCCcCcccccchHHHHHHH--HHcCC----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCccccCchhHH
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEGI----KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFTLDEQLS 88 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g~----~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~ 88 (843)
|+|.=|-|-+-.. .-..+ +..|- ..+|..++. -..++.+.|.+.|+.||+ ||+..|+.++. -
T Consensus 8 PTG~LHiG~artA-L~n~l~Ar~~gG~fiLRiEDTD~~R-------~~~e~~~~I~~~L~WlGl--~wDe~y~QSeR--~ 75 (433)
T PRK12410 8 PTGDMHIGNLRAA-IFNYIVAKQQNEDFLIRIEDTDKER-------NIEGKDKEILEILNLFGI--SWDKLVYQSEN--L 75 (433)
T ss_pred CCCcccHHHHHHH-HHHHHHHHHcCCEEEEEeCcCCCCc-------CChHHHHHHHHHHHHcCC--CCCCCeehhcc--H
Confidence 6788888876322 22222 34442 122222221 235677899999999996 55566665442 2
Q ss_pred HHHHHHHHHHHHcCceee
Q 003160 89 RAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 89 ~~v~~~F~~L~~~GlIyr 106 (843)
..-..+..+|.++|..|+
T Consensus 76 ~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 76 KFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHHHHHcCCeee
Confidence 444567889999999995
No 286
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=28.27 E-value=1.5e+02 Score=32.87 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
+.++++.++++++.+++.++.|+|-
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w 28 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVI 28 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4555666666677777777777664
No 287
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=28.13 E-value=73 Score=40.80 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+-.+++++++|+|+++++++.++.-.=.-..|.=+-.+-.+..+.-+++++.+++.++.|++.+
T Consensus 924 ~id~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l 987 (995)
T PTZ00419 924 FIDLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAI 987 (995)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448889999999999998887663333344444445555666666777777777777777644
No 288
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=27.98 E-value=56 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.9
Q ss_pred HHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHH
Q 003160 793 LVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKIN 826 (843)
Q Consensus 793 ~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~ 826 (843)
..+.++||.|..|.| +++.-=+|+++|-++|.
T Consensus 22 rtkmianpaf~qkip--lietgcekm~dyieelk 53 (62)
T PF10653_consen 22 RTKMIANPAFQQKIP--LIETGCEKMTDYIEELK 53 (62)
T ss_pred hHHHhcCHHHHhccc--hhhhhhHHHHHHHHHHh
Confidence 446889999999998 56777788888888763
No 289
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=27.95 E-value=91 Score=37.05 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=49.5
Q ss_pred CCCcCcccccchHHHHH-HHHHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC-ccccCchhHH
Q 003160 15 LPGTDHAGIATQLVVEK-MLAAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQLS 88 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek-~l~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r-~~~T~d~~~~ 88 (843)
|.|.=|-|=+--...-- .+++. |. ..+|..++. -..++.+.|.++|+.||+ +|+. .+++. +|-
T Consensus 61 PtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDTDp~R-------~~~e~~d~IleDL~WLGl--~wDe~~~~QS--dr~ 129 (601)
T PTZ00402 61 ASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSK-------EKEHFEQAILDDLATLGV--SWDVGPTYSS--DYM 129 (601)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCcc-------cCHHHHHHHHHHHHHCCC--CCCCceeecc--ccH
Confidence 46888888763322211 12333 32 122322221 125678899999999997 6654 45554 455
Q ss_pred HHHHHHHHHHHHcCcee
Q 003160 89 RAVVEAFIRLHEKGLIY 105 (843)
Q Consensus 89 ~~v~~~F~~L~~~GlIy 105 (843)
..-.....+|.++|+.|
T Consensus 130 d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 130 DLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 66677888999999999
No 290
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.93 E-value=1.4e+02 Score=35.04 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
+..+++++++.++.+++-+++.+++++..
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~ 131 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEK 131 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45667888888888888888888887765
No 291
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=27.89 E-value=49 Score=35.31 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=49.0
Q ss_pred CCCCcCcccccchHHHHH-HHHHcC-C---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC-ccccCchhH
Q 003160 14 WLPGTDHAGIATQLVVEK-MLAAEG-I---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQL 87 (843)
Q Consensus 14 ~~~G~D~~Gl~~e~~vek-~l~~~g-~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r-~~~T~d~~~ 87 (843)
=|+|.=|-|-+--...-- .+++.| . -.++..++. -..++.+.|.++|+.||+. |+. .|+.. ++
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~~R-------~~~~~~~~I~~dL~wLGl~--wDe~~~~QS--~r 76 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPR-------EVPGAADDILRTLEAYGLH--WDGEVVYQS--QR 76 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCCC-------CChHHHHHHHHHHHHcCCC--CCCCeeeee--CC
Confidence 367888988763222211 123333 2 122222211 2245778899999999965 543 34443 33
Q ss_pred HHHHHHHHHHHHHcCceeeC
Q 003160 88 SRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 88 ~~~v~~~F~~L~~~GlIyr~ 107 (843)
.+.-+.+..+|.++|++|.-
T Consensus 77 ~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 77 HALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred HHHHHHHHHHHHHcCCEEec
Confidence 45566778899999999964
No 292
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=27.83 E-value=82 Score=37.31 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 57 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 57 ~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
..+.+.|.++|+.||+ +|+..++++ ++...-.....+|.++|+.|.-
T Consensus 152 ~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 152 PEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred HHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCccC
Confidence 4566899999999998 676665554 4555667778899999999973
No 293
>PHA02109 hypothetical protein
Probab=27.79 E-value=1e+02 Score=29.83 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 766 LADMVDISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 766 l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
|.|+-|.-+|+..|+-+++-|..|+.+++.||.|
T Consensus 185 L~~~~~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N 218 (233)
T PHA02109 185 LEGLTDKLKQISELTIKLEALSDEACQVKHKILN 218 (233)
T ss_pred hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788899999999999999999999998887
No 294
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=27.68 E-value=3e+02 Score=27.75 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++...+..|+|+..++++.|++...+. ..++.+--..--..--++..-++.++.++...+-+|..+
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~A--k~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~ 96 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEA--KQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDN 96 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555554433 122211111111111122234555555555555555543
No 295
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=27.62 E-value=84 Score=33.56 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=18.8
Q ss_pred EEEEeeeEECCCCCcccccCCCc
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNV 476 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNv 476 (843)
...-|+++++.+|+|+||+.|-.
T Consensus 215 ~y~H~pll~~~~g~kLSKR~~~~ 237 (272)
T TIGR03838 215 RYLHLPLVVNADGEKLSKQNGAP 237 (272)
T ss_pred eEEechhhhCCCCCeeeccCCcc
Confidence 55556888899999999998754
No 296
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.62 E-value=2.7e+02 Score=34.44 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=37.0
Q ss_pred eehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhC----Cc-cc
Q 003160 428 GHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG----TA-GQ 502 (843)
Q Consensus 428 G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~----~~-~~ 502 (843)
--|.+--||++-+ +||.. -|+- + + .|... ...|..+++ -|-|.|=||+++. .. +.
T Consensus 514 DpDVLDTWFSS~L---------~PfS~---lGWP-~-~----t~d~~-~fyP~sllE-TG~DILfFWVaRMvmLg~kLtG 573 (995)
T KOG0432|consen 514 DPDVLDTWFSSGL---------WPFST---LGWP-E-E----TKDFK-NFYPLSLLE-TGHDILFFWVARMVMLGLKLTG 573 (995)
T ss_pred CccHHHhhhhccc---------ccchh---cCCc-c-c----cccHH-hcCCchhhh-cCchHHHHHHHHHHHhhhhhcC
Confidence 4678888887532 46632 3442 1 1 12222 235666664 4999999998753 23 56
Q ss_pred ccccCHHHH
Q 003160 503 DLSLSIERL 511 (843)
Q Consensus 503 D~~f~~~~~ 511 (843)
.+.|+.--+
T Consensus 574 ~lPF~~V~L 582 (995)
T KOG0432|consen 574 ELPFKEVLL 582 (995)
T ss_pred CCCchheee
Confidence 777776443
No 297
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.60 E-value=1.8e+02 Score=33.36 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003160 816 EKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 816 ~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++++++++|++++..++.|++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666654
No 298
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=27.54 E-value=28 Score=34.12 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=9.2
Q ss_pred CCCeeEEeeccceeEecc
Q 003160 285 GGEVIEPLVSKQWFVTME 302 (843)
Q Consensus 285 ~g~~v~~~~~~QWFl~~~ 302 (843)
.|..+++.++||||.+-+
T Consensus 23 k~KK~V~iiSPQWF~k~G 40 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG 40 (163)
T ss_dssp TT-EEEEE--GGG--TT-
T ss_pred cCCcEEEEECCcccCCCC
Confidence 467788888888888744
No 299
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=27.37 E-value=2.1e+02 Score=34.83 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhh
Q 003160 781 KRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRS 837 (843)
Q Consensus 781 k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~ 837 (843)
..+..++..+-+++++|+.+.|....+++-.++-+++++++++=| +.+++++++|+.
T Consensus 539 eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~ 603 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVES 603 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 344557777788889998666888889888888888887776544 444555555554
No 300
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.34 E-value=54 Score=26.60 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGL 793 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~ 793 (843)
-...++.+++|+++++++|++++
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777654
No 301
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=27.10 E-value=1.9e+02 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
...+.++..+++.++..+++++.+++.
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544443
No 302
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.93 E-value=6.6e+02 Score=28.52 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCceEEEEeeeEECCCCCcccccCCCccChhhHHH
Q 003160 450 VPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIK 484 (843)
Q Consensus 450 ~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~ 484 (843)
.|--.-.--|+|+..+|+|+-...|.+|-..|+++
T Consensus 429 ~~RV~HvgFGlVLGeD~KkFkTRsgetVrL~DLLd 463 (656)
T KOG4426|consen 429 YPRVEHVGFGLVLGEDKKKFKTRSGETVRLLDLLD 463 (656)
T ss_pred ccceeeeeeeeEEccCcccccccccceeeHHHHHH
Confidence 34334456788999999999999999999999887
No 303
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.90 E-value=1.5e+02 Score=32.66 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003160 810 VVRGVQEKAAEAEEKINLTKNRL 832 (843)
Q Consensus 810 vv~~~~~kl~~~~~~l~~~~~~l 832 (843)
.+++..++.++++++++.+++.+
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556665555555443
No 304
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.89 E-value=2.1e+02 Score=27.37 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
++.++.+++.++..+...++...+...
T Consensus 47 lE~eld~~~~~l~~~k~~lee~~~~~~ 73 (143)
T PF12718_consen 47 LEEELDKLEEQLKEAKEKLEESEKRKS 73 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444444444444433
No 305
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=1.3e+02 Score=27.76 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred ecCCeEEEecCCCc---cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHH
Q 003160 756 ASEGLEAYLPLADM---VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLT 828 (843)
Q Consensus 756 ~~~~~~~~~~l~~~---id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~ 828 (843)
+.++..+|-.+++. ++.+.-...|+++++.++..++.+++ -.+..++++.+++++|.+.
T Consensus 49 l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLek--------------Qe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 49 LDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEK--------------QEEKLQERLEELQSEIQKA 110 (119)
T ss_pred CCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
No 306
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.49 E-value=1.9e+02 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003160 815 QEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 815 ~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+|+++|.++-..+++..+++
T Consensus 277 ~ek~~qy~~Ee~~~reen~rl 297 (552)
T KOG2129|consen 277 QEKLMQYRAEEVDHREENERL 297 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344444444433333333333
No 307
>PHA03395 p10 fibrous body protein; Provisional
Probab=26.49 E-value=4.3e+02 Score=22.92 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
+..-++.+..|..-+|.+++.++..|.+ +.+-.+||..+-++|..+..++..+..+++
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nlpd-----------v~~l~~kLdaq~~~Ltti~tkv~~I~diLn 66 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANLPD-----------VTEINEKLDAQSASLDTISSAVDNITDILN 66 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHccC
Confidence 3456777888999999999999876654 556667788888888888888888777654
No 308
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.47 E-value=1.5e+02 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 810 VVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 810 vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
.+++..++.+++++++.+++..++.
T Consensus 240 ~I~~~~~~k~e~~~~I~~ae~~~~~ 264 (312)
T smart00787 240 KIEDLTNKKSELNTEIAEAEKKLEQ 264 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666665443
No 309
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.41 E-value=2.8e+02 Score=30.90 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
++++.+++++++..+.++...+++-..- .|+.-....-+.++++++++..++..|+.++
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~~~~~~-----d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQIKNKVF-----DPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554444432221 1332233333444444444444444444443
No 310
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.37 E-value=3.9e+02 Score=24.67 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=32.2
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 802 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 802 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
|+++..++.++--++++..+++.++++++.+..+++-+
T Consensus 80 ~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 80 YVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888899999999999999999999888887643
No 311
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=26.26 E-value=2.2e+02 Score=26.72 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+.-++-+.+..+.-.++.+..-+....--....+++.+.-+++++++++++++++..++.|..++
T Consensus 45 ~~l~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 45 SRLRFILSARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666543322222345667778888888888888888877776644
No 312
>PRK11020 hypothetical protein; Provisional
Probab=26.03 E-value=1.6e+02 Score=26.61 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+..++.+|...+++++.|| +......+.+.++++..+++.+.+.|+.++.
T Consensus 3 ~K~Eiq~L~drLD~~~~Kl---------aaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKL---------AAASLRGDAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654 4466677788899999999999999988875
No 313
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=26.00 E-value=1.8e+02 Score=23.06 Aligned_cols=54 Identities=19% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 784 SKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 784 ~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+.-.++.++..+.-..--+.+.+++.+.-++|+++.+++++.+++..+.|..
T Consensus 11 r~lGfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~~ 64 (65)
T PF09278_consen 11 RELGFSLEEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAELQALRAQLEH 64 (65)
T ss_dssp HHTT--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444545452222245566777778888888888888888877777664
No 314
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=25.84 E-value=2.2e+02 Score=26.71 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+.-++-+.+..+.-.++.+...|.... ....++++.+.-++|+++.+++++++++....|..++
T Consensus 45 ~~l~~I~~lr~~GfsL~eI~~ll~~~~-~~~~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i 108 (131)
T cd04786 45 WVLEIISSAQQAGFSLDEIRQLLPADA-SNWQHDELLAALERKVADIEALEARLAQNKAQLLVLI 108 (131)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667667777777776432 2345677778788888888888888877777776654
No 315
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.82 E-value=4.1e+02 Score=22.47 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
..+.....+.+..=+...+..|+.... ..-+ +.++...+++..++.++...+..+..+.
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~-~~~~-~~~~~~~~~~~~~~~ei~~~~~~l~~l~ 61 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEP-GSDL-EELEEQLKKHKELQEEIESRQERLESLN 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTH-SSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCH-HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 455666666666677777777755555 3333 3344445566666666666666555554
No 316
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.82 E-value=2.7e+02 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 782 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 782 ~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
.+..+.--++.+++.+.... ++..+.-+++.++++++++.+++.+..|..++
T Consensus 52 ~lr~~g~~l~~i~~~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 103 (103)
T cd01106 52 FLKELGFSLKEIKELLKDPS------EDLLEALREQKELLEEKKERLDKLIKTIDRTL 103 (103)
T ss_pred HHHHcCCCHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445556666666666543 77888899999999999999999999888753
No 317
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.65 E-value=1.9e+02 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 811 VRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 811 v~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
.+...+.+.+.+.++...+..+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 114 VESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 318
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=25.45 E-value=99 Score=39.02 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+.-+++++++++|+++++++.++.-.=.-..|.=+..+-.+..+.-+++++.+++.++.+++.+
T Consensus 806 ~id~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l 869 (874)
T PRK05729 806 LIDVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERL 869 (874)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999874333344555556666777777788888888888888754
No 319
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.34 E-value=3e+02 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 812 RGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 812 ~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.+++.+++.++.....+.|+.|++
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665
No 320
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=25.13 E-value=2.6e+02 Score=24.94 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
|.+.-+..|+++++.++++++++++ -.+...+++.+++.++.++.+
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~--------------~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLER--------------QEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhC
No 321
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=24.94 E-value=4.1e+02 Score=22.21 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNR 831 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~ 831 (843)
+..|-++|.++--+....|.+++.+...- +.-+..-+.++++.+.++..++..
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~e~-------e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIKEL-------EKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777666666666666644331 123333444444444444444443
No 322
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.90 E-value=63 Score=26.97 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=12.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGL 793 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~ 793 (843)
++++++++++++.+.++.+++++
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555544
No 323
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=24.77 E-value=4.7e+02 Score=23.59 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---HHHHHHHHHHHHHHHHH
Q 003160 560 LPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIAQAVLLYIFENIL 636 (843)
Q Consensus 560 ~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~---~~~~~~~~l~~~l~~~l 636 (843)
..++-++..+..+.+.+..++.+.+++.++..++++. ..+.++| +.. .+.++++.+ .|......+..++..++
T Consensus 36 ~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~-~~~~~fy-~~v--~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~ 111 (122)
T smart00836 36 PEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLA-SAFHSFY-NKC--RVLGEENPELRAARLALLKAVRQVLANGL 111 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHH-ccC--cccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888999999999999999987 3455544 433 233332222 23333444445566666
Q ss_pred HHhCC
Q 003160 637 KLLHP 641 (843)
Q Consensus 637 ~LL~P 641 (843)
.+|..
T Consensus 112 ~llgi 116 (122)
T smart00836 112 RLLGI 116 (122)
T ss_pred HHcCC
Confidence 66653
No 324
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=24.72 E-value=87 Score=31.58 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhHhcC
Q 003160 779 LSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n 799 (843)
.+.++..++.++..++.++.+
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 325
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.71 E-value=3e+02 Score=27.12 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=30.7
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcch
Q 003160 768 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKF 802 (843)
Q Consensus 768 ~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f 802 (843)
+..+++.+.++-.+++.+++++++.+.++|...+.
T Consensus 45 ~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~ 79 (170)
T COG2825 45 VSADLESEFKKRQKELQKMQKELKAKEAKLQDDGK 79 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34688999999999999999999999999998764
No 326
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.67 E-value=3.5e+02 Score=24.07 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPE--DVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~--~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.-.++..|..+...++.+++.++.+-+. .+=+.++.. +-.++..++..++.+++..++..+..+.+
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888888888888877654 111222222 34556666777777777777777776655
No 327
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.57 E-value=2.3e+02 Score=28.21 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
....+.++++++..+++.+......+....=......+..+..++++..++...+.+.+.+.++.
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554444444431111111113344444555555555554444444444
No 328
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.52 E-value=2.3e+02 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 786 MQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 786 ~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++..+.+++.+++| =++-+..-+...+..+.++..+.+.|+++.+.
T Consensus 4 i~e~l~~ie~~l~~-------~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 4 IKEKLNRIETKLDN-------HEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555 11233334455666667777777777777653
No 329
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.43 E-value=2.1e+02 Score=32.71 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcC--cchhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSS--SKFVE-KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n--~~f~~-kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++..|.++..+++.+++.++++.+. ..+-. +...+-.++.+++..++.++++.+++.++.+.+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777666554 22221 111112334555556666666666666655554
No 330
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.39 E-value=1.9e+02 Score=32.66 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
..++++++++++...+++.+++++.|
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~l 68 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQL 68 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 331
>PLN02943 aminoacyl-tRNA ligase
Probab=24.38 E-value=85 Score=39.96 Aligned_cols=65 Identities=8% Similarity=0.188 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
.+--+++++++|+|+++++++.++.-.=.-.-|.=+..+-.+..+.-+++++.+++.|+.+++.+
T Consensus 883 ~~iD~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l 947 (958)
T PLN02943 883 DMVDISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRL 947 (958)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34448899999999999999988874444445555555566666777778888888888777654
No 332
>PRK09039 hypothetical protein; Validated
Probab=24.20 E-value=2.9e+02 Score=30.62 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNR-LAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~-l~~l~~~ 838 (843)
+..+++.|+++++.++.+|+..+.+. ..-+.++++++.+|+...+. ..+|...
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~--------------~~~~~~i~~L~~~L~~a~~~~~~~l~~~ 195 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRD--------------RESQAKIADLGRRLNVALAQRVQELNRY 195 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 333
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.90 E-value=2.6e+02 Score=32.98 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLV 794 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~ 794 (843)
+++.|++++.+++.++++++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 334
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=23.85 E-value=2.7e+02 Score=31.17 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
+..++|+.++..++.++.+++..|
T Consensus 277 ~~m~k~~~ki~~~~~~~~~~~~~~ 300 (391)
T smart00435 277 KSMEKLQEKIKALKYQLKRLKKMI 300 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555444444
No 335
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.80 E-value=4.7e+02 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=30.7
Q ss_pred cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 800 SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 800 ~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.-|+.+..++..+--++++..++++++++++.+..+.+
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~ 115 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQD 115 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888888888877765
No 336
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=23.58 E-value=3.9e+02 Score=25.00 Aligned_cols=62 Identities=6% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+.+.+..+.++..++++..- ++-.|-.+-=.+++.+-..=+.++.+++.+-++.+..|..+.
T Consensus 62 ~~~~~~~~~i~e~~~kl~~~-~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~ 123 (126)
T PF09403_consen 62 AELKELYAEIEEKIEKLKQD-SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQ 123 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444332 344443333344455555555555555555556665555543
No 337
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=23.46 E-value=1.5e+02 Score=32.99 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 003160 819 AEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 819 ~~~~~~l~~~~~~l~~l~~ 837 (843)
+.++.+|..++++|+.|.+
T Consensus 447 ~~lqe~L~ev~~~Lasl~a 465 (486)
T KOG2185|consen 447 EALQERLKEVRKALASLLA 465 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666654
No 338
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.45 E-value=1.8e+02 Score=33.59 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV-------RGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv-------~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+...++.+++.++..++.++..+++...+ +..+.+-..+. ....+++.+.++++..++..++..+.
T Consensus 240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQVQKAGLTKSTAS-NYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777766544443 22222222222 23344445555555555555544433
No 339
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=23.43 E-value=2.7e+02 Score=26.35 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 810 VVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 810 vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
||++-++..++.+++.++-++.|+++++||
T Consensus 36 vv~er~ee~~~~~~~~~er~~kl~~~r~~m 65 (135)
T PRK10947 36 VVNERREEESAAAAEVEERTRKLQQYREML 65 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555666665544
No 340
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.36 E-value=3e+02 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003160 773 SAEVQRLSKRLSKMQSEYDGL 793 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~ 793 (843)
+.+++.|+.+++.+..+++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~ 24 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVH 24 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554444444433
No 341
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.35 E-value=2.1e+02 Score=33.98 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=40.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+.++++..+.++...++.++++++..+.|-+=--...++.+.+-+.+++.++.+++.++..++.+
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888888888888877431112223344444444455555555554444433
No 342
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=23.25 E-value=3.7e+02 Score=30.06 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV----------RGVQEKAAEAEEKINLTKNRLA 833 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv----------~~~~~kl~~~~~~l~~~~~~l~ 833 (843)
+-..+|=|+++||+.+..-+++||..|--.-..|.+|- +.++.-..-++++++++...|.
T Consensus 201 alvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 201 ALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33578999999999999999999988776666666665 2333334455666666665553
No 343
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.22 E-value=2.2e+02 Score=29.65 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
++.++++.+.+.+.++..+..++..|..-+-.-|..+.-.++.-++...++.++..+...|+..
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555444444555555555555555555555555555443
No 344
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.14 E-value=2.6e+02 Score=25.93 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGL 793 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~ 793 (843)
.+.+++-++..++.+++++
T Consensus 24 ~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARL 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 345
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=23.04 E-value=2.6e+02 Score=24.97 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCH
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPE 808 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~ 808 (843)
...+-++..++|+++++++++|.+..|...+..
T Consensus 7 ~~~m~kqaq~mQ~k~~~~q~eL~~~~v~g~sgg 39 (102)
T TIGR00103 7 LGELMKQAQQMQEKMKKLQEEIAQFEVTGKSGA 39 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEECC
Confidence 567778888889999999999999888877643
No 346
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=22.80 E-value=3.7e+02 Score=23.14 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhc
Q 003160 782 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN--RLAFLRSTVM 840 (843)
Q Consensus 782 ~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~--~l~~l~~~~~ 840 (843)
+++|+.++|++.+. .+.+-++||.+++++....++ .+.-.++|-+
T Consensus 2 KleKi~~eieK~k~--------------Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~m 48 (83)
T PF14193_consen 2 KLEKIRAEIEKTKE--------------KIAELQARLKELEAQKTEAENLEIVQMVRSMKM 48 (83)
T ss_pred hHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
No 347
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=22.56 E-value=40 Score=31.15 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccc
Q 003160 198 KYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNE 242 (843)
Q Consensus 198 ~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~ 242 (843)
+--+++.|||+|. +||||-- ..|. --+|++|.+.+
T Consensus 47 dK~dpnVGtGlVG-APACGDV-------MkLq--Ikvd~~g~I~d 81 (157)
T KOG3361|consen 47 DKNDPNVGTGLVG-APACGDV-------MKLQ--IKVDDSGVIED 81 (157)
T ss_pred CCCCCCccccccc-Cccccce-------eeEE--EEECCCCcEEE
Confidence 3456788999997 8999864 1111 12577887754
No 348
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=22.18 E-value=2.9e+02 Score=29.91 Aligned_cols=58 Identities=12% Similarity=0.291 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
-+.-+.+...-|+.|++-.+.+-.++++ -|+.+++|++.++.+++..+++++.|+...
T Consensus 16 ~eEti~qi~~aL~~L~~v~~diF~rI~~----------Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~ 73 (297)
T PF11945_consen 16 REETILQIADALEYLDKVSNDIFSRISA----------RVERNRERLQAIQQRIEVAQAKIEKLQGSK 73 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444788888899999999998888887 789999999999999999999999998753
No 349
>PF15456 Uds1: Up-regulated During Septation
Probab=21.96 E-value=3.6e+02 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 003160 815 QEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 815 ~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..|..++..++.++++.+..+++
T Consensus 87 ~rk~ee~~~eL~~le~R~~~~~~ 109 (124)
T PF15456_consen 87 DRKCEELAQELWKLENRLAEVRQ 109 (124)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555
No 350
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.93 E-value=2.6e+02 Score=32.47 Aligned_cols=53 Identities=9% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
..|.+++..+++++++++.+|.. ..+.-+++...++.-+.+++....-|.+++
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~----------~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDA----------TIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666554 344455677777777777777666666554
No 351
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.78 E-value=1.8e+02 Score=33.03 Aligned_cols=65 Identities=14% Similarity=0.243 Sum_probs=45.5
Q ss_pred EecCCCc-cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 763 YLPLADM-VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 763 ~~~l~~~-id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++++... -+++++++++++++++++..+++.. |..+ .+...+++++.++.+++++++.++.-.+-
T Consensus 237 ~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~----------k~~~~~~q~~~~~k~~~~~~~~~~~~~~~ 302 (406)
T PF02388_consen 237 ELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKN----------KLKELEEQLASLEKRIEEAEELIAEYGDE 302 (406)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH-SE
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhh----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3444443 3677889999999999999887665 3333 45567788888888888888877765553
No 352
>PLN02907 glutamate-tRNA ligase
Probab=21.67 E-value=1.3e+02 Score=36.96 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceee
Q 003160 57 EKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 57 ~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 106 (843)
.++.+.|.++|+.||+. |+..++++| |-..-.....+|.++|+.|.
T Consensus 262 ~e~~~~I~~dl~wLG~~--~d~~~~qS~--r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 262 DEFVENILKDIETLGIK--YDAVTYTSD--YFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred hHHHHHHHHHHHHcCCC--CCCcccccc--cHHHHHHHHHHHHHcCCeee
Confidence 56788999999999964 556665544 44556778889999999996
No 353
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=2.1e+02 Score=32.38 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCCcCcccccchHHHHHHH--HHcC-C---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcccc--Cch-
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEG-I---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRERFT--LDE- 85 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g-~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~~T--~d~- 85 (843)
|+|+=|-|=. .++.=+.| ++.| + ..+|-..+.++ ....++|.+.|+..|+..|=. +.+- .-|
T Consensus 42 PTGfLHlGgL-RTALfNYLfArk~gGkFiLRiEDTDq~R~v-------~gs~e~i~~~L~w~nl~~DEg-P~~gG~~GPY 112 (524)
T KOG1149|consen 42 PTGFLHLGGL-RTALFNYLFARKKGGKFILRIEDTDQKRLI-------RGSEEAIYEDLKWANLDWDEG-PGVGGPFGPY 112 (524)
T ss_pred CCcceehhhH-HHHHHHHHHHHhcCCeEEEEeccccccccc-------cchHHHHHHHHHhcCCCcccC-CCcCCCCCch
Confidence 6788887753 22333444 3333 2 12332222232 345678889999999777622 2111 111
Q ss_pred ---hHHHHHHHHHHHHHHcCceee----------------CCcccc-cCCCCCcccCcccccccccCCeEEEEEEEecC
Q 003160 86 ---QLSRAVVEAFIRLHEKGLIYQ----------------GSYMVN-WSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG 144 (843)
Q Consensus 86 ---~~~~~v~~~F~~L~~~GlIyr----------------~~~~v~-w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~ 144 (843)
+..+.-+..-.+|.+.|..|| ..+.+. |+-+|. -+||+|++.....|+-+-|+|++.+
T Consensus 113 ~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kca-~ls~~ei~~~lakg~pf~iRFrl~~ 190 (524)
T KOG1149|consen 113 EQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKCA-NLSDAEIKQKLAKGTPFTIRFRLPK 190 (524)
T ss_pred hhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchhc-ccCHHHHHHHHhcCCCeeEEEecCC
Confidence 122233344457888999997 334444 666554 5789999988888988899999865
No 354
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.55 E-value=2.9e+02 Score=27.64 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcc-hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSK-FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~-f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
-.-.+-+++.+++++++..++...+.. -..+.-++..++..++++++++++++.+..++.|+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677777888877777777655431 111122233345556666666666666666665553
No 355
>PRK10132 hypothetical protein; Provisional
Probab=21.47 E-value=4.5e+02 Score=23.86 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=38.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
-|+++.+++|..++..|-..++.+-+-..+..- .++ .++.++-...|.+.++.+...+.
T Consensus 8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~-~~~-~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 8 NDVDDGVQDIQNDVNQLADSLESVLKSWGSDAK-GEA-EAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHH-HHHHHHHHHHHHHHHHHHhhhHH
Confidence 467888899999999998888887665554332 122 45555555566666655554444
No 356
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.45 E-value=2.5e+02 Score=32.06 Aligned_cols=58 Identities=10% Similarity=0.230 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDV---VRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~v---v~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
....++..|+.+..++.+++....+.-. .+.+++ ..+.++++.++++++..+++.+..
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKK------DKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888888888876433211 101222 234455666666666666665544
No 357
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=2e+02 Score=34.70 Aligned_cols=69 Identities=19% Similarity=0.131 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
..+....+.+.++.|+.++++.+++|..-.+.-.+-..-++.++.|...++++++.+...|..++..-+
T Consensus 557 ~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 557 LKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344555566666666666666666666666666666778889999999999999999999998887654
No 358
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.23 E-value=1.9e+02 Score=29.03 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
+...+++.|++++..|++++..++.+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666655543
No 359
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.17 E-value=2.7e+02 Score=27.71 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
.+|+..+++++..+++++..+++
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~ 116 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKE 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 360
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=21.10 E-value=2.3e+02 Score=31.51 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
+..+++.++++++.++++++.|+|-
T Consensus 5 ~~~~~~~~~~~~~~le~~~~~p~~w 29 (360)
T TIGR00019 5 LLEKLESLLERYEELEALLSDPEVI 29 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4455666666666666666666664
No 361
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=21.09 E-value=3.3e+02 Score=31.72 Aligned_cols=62 Identities=13% Similarity=0.306 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV---RGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv---~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.+=+++++..|+.+++..+++|..-.. ....+++. +.-.+.+..++++++.|+..|+.|+.
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~ 228 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-NPDDPELKSDIEELERHISSLKERIEFLENMLEDLED 228 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555788889999999999998888554 33333333 22334456666666666666666654
No 362
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.99 E-value=85 Score=36.19 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
...+++.++ |++.|++|++.|++++.
T Consensus 23 ~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 23 MADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 455666666 88888888888888776
No 363
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.94 E-value=2.2e+02 Score=28.27 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 809 DVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 809 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.+++-+++..+++++++++++.|+..++
T Consensus 146 ~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 146 ELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566667777777777777766543
No 364
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.90 E-value=2.5e+02 Score=35.43 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.+..+.++.++.+.++++|+.+++.+++ --..-+++.+.|+..++.+.++++..++.|+.
T Consensus 363 ~~n~i~~~k~~~d~l~k~I~~~~~~~~~------~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 363 IENSIRKLKKEVDRLEKQIADLEKQTNN------ELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555522 22234555566666666666666666666554
No 365
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=20.77 E-value=79 Score=37.21 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCccccCchhHHH----HHHHHHHH
Q 003160 23 IATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLSR----AVVEAFIR 97 (843)
Q Consensus 23 l~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~~----~v~~~F~~ 97 (843)
+|||..+|+.+++.|+...+ .++.|. ++.++|.+|-..+|-++| |+..-.+-.|.+.+ ....--..
T Consensus 502 TPIQLSAERl~rk~gk~i~e-Drevfd--------~~tdTIirQV~dI~rMVdeF~afARmP~p~~e~~dL~~ll~e~~~ 572 (712)
T COG5000 502 TPIQLSAERLLRKLGKEIDE-DREVFD--------RCTDTIIRQVEDIKRMVDEFRAFARMPAPKLEKSDLRALLKEVSF 572 (712)
T ss_pred chhhhhHHHHHHHhccccch-HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHH
Confidence 48999999988888877666 566664 466788888888888888 55422233333322 22333345
Q ss_pred HHHcCc
Q 003160 98 LHEKGL 103 (843)
Q Consensus 98 L~~~Gl 103 (843)
||+-|-
T Consensus 573 L~e~~~ 578 (712)
T COG5000 573 LYEIGN 578 (712)
T ss_pred HHhccC
Confidence 787773
No 366
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.44 E-value=3.2e+02 Score=27.79 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+...+++++.++.-+++++--+ ..+|+.....-..||.+|++.+++++..++...
T Consensus 38 l~~i~~~leEa~ell~qMdlEv------r~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~ 92 (220)
T KOG1666|consen 38 LSEIDSKLEEANELLDQMDLEV------RELPPNFRSSYLSKLREYKSDLKKLKRELKRTT 92 (220)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH------HhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555433 468888999999999999999999998877654
No 367
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.42 E-value=5.3e+02 Score=28.00 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCc
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSS 800 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~ 800 (843)
+.||.|+++++..+...++.+|.-+
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6899999999999999999999975
No 368
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.35 E-value=4.6e+02 Score=25.20 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLA 833 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~ 833 (843)
+...+++||++.++.+.+..+-+.+.++- |-++-|.+..- -+.++.+++.+++..++
T Consensus 76 ~~~eelerLe~~iKdl~~lye~Vs~d~Np--f~s~~~qes~~----~veel~eqV~el~~i~e 132 (157)
T COG3352 76 DIKEELERLEENIKDLVSLYELVSRDFNP--FMSKTPQESRG----IVEELEEQVNELKMIVE 132 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHhhhHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999888764 55555544322 34444445444444433
No 369
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.16 E-value=1.4e+02 Score=36.96 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPED-VVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~-vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
..-+..++++|+|+++++++.+..-.-. =+.+. +..+..+..++-+.+++..+..++.+++-+
T Consensus 809 ~id~~~e~~rl~k~~~k~~~e~~~~~~k-l~ne~f~~kAp~~vv~~e~~~~~~~~~~~~~l~~~l 872 (877)
T COG0525 809 LIDLAAELARLEKELEKLEKEIDRIEKK-LSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKLEERL 872 (877)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHh-hcchhhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456789999999999999988754332 23344 445555555666677777777777777633
No 370
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.02 E-value=2.5e+02 Score=33.28 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 811 VRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 811 v~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.-++++.++..+...++..+..+++
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~ 241 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTD 241 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 371
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.01 E-value=2.1e+02 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.....++.|++++..++.++..++..|....- .++.-+..+..++.++..+++.+..|+.
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k-------~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNK-------ANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888887777777776655332 4455556666777777777777666654
No 372
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=20.00 E-value=5.9e+02 Score=24.56 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV--RGVQE----KAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv--~~~~~----kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.-..+|..+++.+..++.+....+.+..-...-+.+.. +.++. .+.....+|..|+.+|..+..
T Consensus 37 l~~fr~~L~~~r~eL~~~i~~~~~~~~~~~~~~~D~~D~a~~~~~~~~~l~~~~r~~~~L~~I~~AL~Ri~~ 108 (151)
T PRK10778 37 LAHFKRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVED 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444677888888888888777766664321111111111 12111 134555778888888887754
Done!