Query 003160
Match_columns 843
No_of_seqs 379 out of 2854
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 7E-183 2E-187 1641.0 68.4 795 1-836 63-862 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-151 3E-156 1381.8 43.6 707 1-735 77-857 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 3E-148 9E-153 1350.2 51.1 680 1-700 67-821 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 4E-130 1E-134 1205.2 46.0 660 1-700 63-855 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 1E-119 5E-124 1084.3 51.6 621 1-756 82-879 (880)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 7E-118 2E-122 1080.1 48.6 627 1-756 62-876 (878)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 4E-116 1E-120 1070.2 48.9 617 1-655 63-810 (810)
8 1rqg_A Methionyl-tRNA syntheta 100.0 7.4E-86 2.5E-90 787.9 28.7 464 1-657 32-522 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 1.7E-84 6E-89 761.1 29.0 441 1-656 38-499 (542)
10 3h99_A Methionyl-tRNA syntheta 100.0 8.7E-80 3E-84 721.5 18.9 461 1-669 47-528 (560)
11 3kfl_A Methionyl-tRNA syntheta 100.0 2.4E-78 8.1E-83 707.3 27.6 442 1-657 55-516 (564)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 4.2E-78 1.4E-82 703.7 28.3 433 1-657 54-499 (536)
13 2x1l_A Methionyl-tRNA syntheta 100.0 1.4E-77 4.8E-82 698.9 27.1 433 1-657 41-492 (524)
14 2d5b_A Methionyl-tRNA syntheta 100.0 1.1E-76 3.8E-81 688.2 22.3 428 1-657 32-470 (500)
15 2csx_A Methionyl-tRNA syntheta 100.0 5E-74 1.7E-78 664.7 22.6 424 1-657 34-469 (497)
16 1wka_A Valyl-tRNA synthetase; 100.0 1.7E-39 5.7E-44 309.8 18.6 140 132-275 3-146 (147)
17 1wny_A Isoleucyl-tRNA syntheta 100.0 8.8E-37 3E-41 303.7 15.8 145 132-278 2-186 (186)
18 3c8z_A Cysteinyl-tRNA syntheta 100.0 2.8E-35 9.5E-40 330.7 21.6 144 416-596 237-385 (414)
19 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.7E-35 5.8E-40 332.3 14.0 158 416-596 246-412 (501)
20 3tqo_A Cysteinyl-tRNA syntheta 100.0 3.2E-34 1.1E-38 321.0 20.9 150 421-606 223-373 (462)
21 2ajg_A Leucyl-tRNA synthetase; 100.0 2.7E-33 9.1E-38 281.0 17.2 140 132-272 9-195 (196)
22 3o0a_A Leucyl-tRNA synthetase 100.0 2.4E-32 8.3E-37 277.1 16.7 129 147-276 38-218 (219)
23 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.5E-32 8.6E-37 309.6 13.6 151 421-607 220-372 (461)
24 2wfg_A Cytosolic leucyl-tRNA s 100.0 9.1E-31 3.1E-35 273.1 13.5 135 146-280 32-257 (261)
25 2wfd_A Leucyl-tRNA synthetase, 100.0 9.8E-29 3.4E-33 256.9 16.7 135 135-272 7-250 (252)
26 3pz6_A Leurs, leucyl-tRNA synt 100.0 5.1E-29 1.8E-33 257.3 10.7 156 114-274 47-306 (311)
27 1iq0_A Arginyl-tRNA synthetase 99.8 6.7E-19 2.3E-23 206.0 17.8 176 454-644 381-589 (592)
28 2zue_A Arginyl-tRNA synthetase 99.7 1.3E-17 4.4E-22 195.7 18.9 179 454-644 411-626 (629)
29 3fnr_A Arginyl-tRNA synthetase 99.7 8.9E-17 3.1E-21 181.1 15.5 200 424-645 239-452 (464)
30 1irx_A Lysyl-tRNA synthetase; 99.6 3.6E-17 1.2E-21 189.1 1.6 102 421-525 230-337 (523)
31 1f7u_A Arginyl-tRNA synthetase 98.5 8.5E-07 2.9E-11 103.3 13.7 197 424-643 368-603 (607)
32 2cyb_A Tyrosyl-tRNA synthetase 97.4 0.00026 8.7E-09 76.2 8.2 74 419-500 168-241 (323)
33 3aii_A Glutamyl-tRNA synthetas 96.9 0.0007 2.4E-08 76.8 5.1 67 453-520 315-399 (553)
34 4arc_A Leucine--tRNA ligase; l 96.3 0.0028 9.7E-08 76.6 5.7 79 253-333 153-245 (880)
35 2yxn_A Tyrosyl-tRNA synthetase 96.1 0.0045 1.5E-07 66.3 5.1 72 421-498 191-263 (322)
36 2cfo_A Glutamyl-tRNA synthetas 95.9 0.029 1E-06 63.3 10.9 86 422-511 204-294 (492)
37 2lw1_A ABC transporter ATP-bin 95.9 0.046 1.6E-06 46.5 9.6 67 771-838 19-85 (89)
38 2jan_A Tyrosyl-tRNA synthetase 95.8 0.007 2.4E-07 67.0 5.4 72 421-498 187-260 (432)
39 1h3f_A Tyrosyl-tRNA synthetase 95.7 0.012 4.2E-07 65.2 7.0 69 421-498 187-257 (432)
40 1jil_A Tyrrs, tyrosyl-tRNA syn 95.7 0.0074 2.5E-07 66.8 5.1 72 420-497 185-258 (420)
41 2ts1_A Tyrosyl-tRNA synthetase 95.7 0.0065 2.2E-07 67.1 4.6 72 420-497 184-257 (419)
42 2g36_A Tryptophanyl-tRNA synth 95.7 0.012 4.2E-07 63.3 6.4 73 420-498 152-230 (340)
43 2pid_A Tyrosyl-tRNA synthetase 95.6 0.0061 2.1E-07 66.0 4.0 72 421-498 210-282 (356)
44 1y42_X Tyrosyl-tRNA synthetase 95.6 0.0075 2.6E-07 66.1 4.6 80 414-497 222-320 (392)
45 2o5r_A Glutamyl-tRNA synthetas 95.6 0.049 1.7E-06 61.4 11.2 74 423-500 220-294 (481)
46 2v0c_A Aminoacyl-tRNA syntheta 95.4 0.016 5.5E-07 70.5 6.9 78 253-333 133-225 (878)
47 1qtq_A GLNRS, protein (glutami 95.3 0.011 3.9E-07 67.0 4.9 59 454-513 254-329 (553)
48 3tzl_A Tryptophanyl-tRNA synth 95.1 0.0099 3.4E-07 63.5 3.4 73 420-498 138-217 (322)
49 1n3l_A Tyrosyl-tRNA synthetase 95.0 0.02 6.7E-07 62.6 5.3 70 420-498 177-248 (372)
50 2dlc_X Tyrosyl-tRNA synthetase 94.5 0.028 9.5E-07 61.9 5.0 70 420-498 181-253 (394)
51 1yi8_B Tryptophanyl-tRNA synth 94.4 0.024 8E-07 61.4 4.2 73 420-498 161-240 (351)
52 2zp1_A Tyrosyl-tRNA synthetase 94.3 0.034 1.2E-06 59.2 5.0 67 420-498 162-229 (314)
53 2el7_A Tryptophanyl-tRNA synth 94.2 0.018 6.3E-07 61.9 2.8 74 420-499 140-221 (337)
54 2hz7_A Glutaminyl-tRNA synthet 94.0 0.09 3.1E-06 62.5 8.2 59 454-513 294-369 (851)
55 2ja2_A Glutamyl-tRNA synthetas 94.0 0.18 6.2E-06 56.8 10.3 86 423-511 210-303 (498)
56 1j09_A Glutamyl-tRNA synthetas 93.9 0.14 4.8E-06 57.4 9.3 84 424-511 202-289 (468)
57 3afh_A Glutamyl-tRNA synthetas 93.7 0.25 8.5E-06 55.7 10.9 82 425-510 215-299 (488)
58 3vgj_A Tyrosyl-tRNA synthetase 93.5 0.044 1.5E-06 59.7 4.0 69 420-497 199-272 (373)
59 3i05_A Tryptophanyl-tRNA synth 93.4 0.036 1.2E-06 60.7 3.2 56 422-481 225-283 (395)
60 1f7u_A Arginyl-tRNA synthetase 93.4 0.034 1.2E-06 64.6 3.2 53 53-110 267-321 (607)
61 2ip1_A Tryptophanyl-tRNA synth 93.2 0.053 1.8E-06 60.2 4.3 58 420-481 248-309 (432)
62 2cya_A Tyrosyl-tRNA synthetase 93.0 0.083 2.8E-06 57.4 5.4 70 420-498 176-264 (364)
63 3viq_B Mating-type switching p 92.8 0.59 2E-05 38.6 8.7 61 772-837 6-66 (85)
64 3jxe_A Tryptophanyl-tRNA synth 92.5 0.09 3.1E-06 57.4 4.8 56 422-481 208-267 (392)
65 1r6u_A Tryptophanyl-tRNA synth 92.5 0.087 3E-06 58.3 4.7 57 420-481 255-316 (437)
66 3hv0_A Tryptophanyl-tRNA synth 92.5 0.077 2.6E-06 58.0 4.2 54 424-481 223-280 (393)
67 3tze_A Tryptophanyl-tRNA synth 92.3 0.09 3.1E-06 57.7 4.4 57 421-481 243-303 (406)
68 2j5b_A Tyrosyl-tRNA synthetase 92.0 0.098 3.3E-06 56.5 4.3 68 421-497 186-257 (348)
69 3hzr_A Tryptophanyl-tRNA synth 91.8 0.13 4.5E-06 56.0 4.9 67 422-497 225-294 (386)
70 1r6t_A Tryptophanyl-tRNA synth 91.7 0.12 4.1E-06 58.0 4.7 57 420-481 302-363 (477)
71 3fnr_A Arginyl-tRNA synthetase 91.7 0.11 3.7E-06 58.4 4.2 104 1-109 59-193 (464)
72 2yy5_A Tryptophanyl-tRNA synth 91.5 0.093 3.2E-06 56.6 3.3 73 420-498 146-230 (348)
73 1i6k_A TRPRS, tryptophanyl-tRN 91.4 0.12 4.1E-06 55.3 4.0 73 420-498 136-220 (328)
74 3al0_C Glutamyl-tRNA(Gln) amid 90.2 0.19 6.5E-06 58.0 4.5 71 426-500 320-391 (592)
75 3p0j_A Tyrosyl-tRNA synthetase 90.1 0.18 6.1E-06 59.2 4.2 58 420-481 182-244 (690)
76 2cyc_A Tyrosyl-tRNA synthetase 89.8 0.28 9.7E-06 53.4 5.3 69 420-498 179-277 (375)
77 1nzj_A Hypothetical protein YA 87.6 0.46 1.6E-05 49.9 4.9 80 15-106 14-100 (298)
78 4g6z_A Glutamate-tRNA ligase; 87.2 1.5 5.3E-05 49.0 9.1 83 426-512 225-310 (490)
79 3foc_A Tryptophanyl-tRNA synth 85.9 0.36 1.2E-05 53.5 3.1 54 424-481 290-347 (451)
80 3sz3_A Tryptophanyl-tRNA synth 85.5 0.2 6.7E-06 53.8 0.7 73 420-498 142-229 (341)
81 3n9i_A Tryptophanyl-tRNA synth 84.9 0.51 1.7E-05 50.6 3.6 71 420-497 151-234 (346)
82 2k48_A Nucleoprotein; viral pr 83.4 3.1 0.00011 35.4 6.8 62 774-835 35-101 (107)
83 2ke4_A CDC42-interacting prote 83.1 5.5 0.00019 34.1 8.6 65 772-837 13-90 (98)
84 1go4_E MAD1 (mitotic arrest de 80.9 2.7 9.2E-05 36.0 5.7 66 771-836 16-95 (100)
85 3a04_A Tryptophanyl-tRNA synth 80.7 1.5 5.2E-05 47.5 5.3 60 422-481 209-270 (372)
86 2ic6_A Nucleocapsid protein; h 78.8 5.8 0.0002 32.1 6.7 61 775-835 6-71 (78)
87 3prh_A Tryptophanyl-tRNA synth 78.3 1.2 4.2E-05 48.4 3.6 73 420-498 170-254 (388)
88 1lrz_A FEMA, factor essential 76.6 4.4 0.00015 44.8 7.6 60 770-837 243-302 (426)
89 4fi5_A Nucleoprotein; structur 74.7 7.1 0.00024 33.7 6.5 60 776-835 24-88 (113)
90 2ic9_A Nucleocapsid protein; h 73.3 8.5 0.00029 32.3 6.5 60 776-835 7-71 (96)
91 4dac_A Computationally designe 72.0 1.6 5.6E-05 26.5 1.4 22 772-793 6-27 (28)
92 3lof_A Heat shock 70 kDa prote 64.9 34 0.0012 29.8 9.3 60 779-838 7-74 (113)
93 3hnw_A Uncharacterized protein 62.3 9.4 0.00032 34.9 5.2 61 770-837 71-131 (138)
94 3hnw_A Uncharacterized protein 62.2 12 0.00042 34.1 5.9 61 770-837 64-124 (138)
95 2lq4_p Lysophosphatidic acid r 61.0 0.32 1.1E-05 36.8 -4.0 62 775-836 14-75 (80)
96 2pms_C Pneumococcal surface pr 58.4 47 0.0016 29.4 8.7 59 776-834 63-121 (125)
97 2pms_C Pneumococcal surface pr 56.9 41 0.0014 29.8 8.0 61 776-836 8-81 (125)
98 1vcs_A Vesicle transport throu 56.0 46 0.0016 28.5 8.2 61 771-837 35-95 (102)
99 3vem_A Helicase protein MOM1; 55.3 22 0.00075 30.9 5.8 78 760-840 26-103 (115)
100 4adz_A CSOR; transcription, co 53.4 33 0.0011 30.9 6.9 32 773-804 48-79 (136)
101 4gri_A Glutamate--tRNA ligase; 52.7 27 0.00091 39.4 8.0 85 423-512 231-320 (512)
102 2lw1_A ABC transporter ATP-bin 51.4 10 0.00034 31.8 3.2 57 778-835 19-75 (89)
103 2p32_A Heat shock 70 kDa prote 50.8 52 0.0018 28.9 8.1 56 782-837 19-82 (120)
104 3aai_A Copper homeostasis oper 50.7 50 0.0017 27.9 7.4 31 773-803 10-41 (94)
105 2l5g_B Putative uncharacterize 49.8 25 0.00084 24.7 4.2 22 775-796 10-31 (42)
106 2zqm_A Prefoldin beta subunit 49.3 51 0.0017 28.7 7.7 28 770-797 66-93 (117)
107 2l5g_B Putative uncharacterize 48.2 22 0.00075 25.0 3.8 23 773-795 15-37 (42)
108 1fxk_C Protein (prefoldin); ar 48.0 1.5E+02 0.0051 26.3 11.6 46 751-796 61-110 (133)
109 1ud0_A HSC70, 70 kDa heat-shoc 47.9 35 0.0012 29.6 6.4 55 783-837 6-68 (113)
110 2zdi_C Prefoldin subunit alpha 47.8 1.7E+02 0.0057 26.8 12.1 45 751-795 71-119 (151)
111 3u1c_A Tropomyosin alpha-1 cha 46.8 79 0.0027 27.0 8.2 57 772-835 42-98 (101)
112 1nzj_A Hypothetical protein YA 46.7 18 0.00062 37.7 5.0 49 425-476 188-236 (298)
113 2eqb_B RAB guanine nucleotide 46.6 91 0.0031 26.4 8.2 51 772-836 10-60 (97)
114 2hh7_A Hypothetical protein CS 46.5 50 0.0017 29.2 6.9 30 774-803 7-36 (119)
115 3ljm_A Coil Ser L9C; de novo d 45.5 40 0.0014 21.0 4.2 20 816-835 8-27 (31)
116 2ocy_A RAB guanine nucleotide 45.4 34 0.0012 31.6 5.9 60 780-839 78-145 (154)
117 1ses_A Seryl-tRNA synthetase; 45.3 53 0.0018 35.9 8.7 64 768-837 29-92 (421)
118 2dfs_A Myosin-5A; myosin-V, in 45.2 33 0.0011 42.5 7.6 26 812-837 1019-1044(1080)
119 1l8d_A DNA double-strand break 43.5 95 0.0032 26.7 8.5 29 809-837 64-92 (112)
120 3swf_A CGMP-gated cation chann 42.4 94 0.0032 24.8 7.2 49 769-827 2-50 (74)
121 3onj_A T-snare VTI1; helix, HA 41.5 62 0.0021 27.4 6.7 57 775-837 35-94 (97)
122 1qsd_A Protein (beta-tubulin b 41.1 1E+02 0.0035 26.5 8.0 63 775-839 12-80 (106)
123 2qyw_A Vesicle transport throu 40.6 1.3E+02 0.0044 25.7 8.6 55 772-832 47-101 (102)
124 2lf0_A Uncharacterized protein 39.1 63 0.0022 28.1 6.1 50 772-830 8-57 (123)
125 3mxz_A Tubulin-specific chaper 39.0 1.4E+02 0.0048 26.2 8.6 62 775-838 16-82 (116)
126 1g6u_A Domain swapped dimer; d 38.9 92 0.0032 21.3 7.1 19 818-836 22-40 (48)
127 3twe_A Alpha4H; unknown functi 37.4 43 0.0015 20.2 3.4 21 778-798 5-25 (27)
128 3mq7_A Bone marrow stromal ant 37.0 1.2E+02 0.0039 26.5 7.4 29 771-799 61-89 (121)
129 4etp_A Kinesin-like protein KA 36.6 83 0.0029 34.1 8.5 57 771-841 7-63 (403)
130 3efg_A Protein SLYX homolog; x 36.5 80 0.0027 25.6 6.2 52 771-836 11-62 (78)
131 2k48_A Nucleoprotein; viral pr 36.4 1.3E+02 0.0045 25.5 7.5 61 770-830 38-103 (107)
132 1fxk_A Prefoldin; archaeal pro 36.2 78 0.0027 26.9 6.7 28 770-797 61-88 (107)
133 1g6u_A Domain swapped dimer; d 36.1 44 0.0015 22.9 3.7 23 775-797 21-43 (48)
134 1x79_B RAB GTPase binding effe 35.2 1.5E+02 0.0052 25.7 8.1 55 773-837 12-66 (112)
135 3etv_A Protein transport prote 34.6 24 0.00083 36.9 3.5 32 766-797 8-39 (355)
136 2dq0_A Seryl-tRNA synthetase; 34.2 40 0.0014 37.3 5.5 64 770-834 34-101 (455)
137 2eqb_B RAB guanine nucleotide 33.7 1.3E+02 0.0043 25.5 7.1 50 779-834 45-94 (97)
138 3qne_A Seryl-tRNA synthetase, 33.6 23 0.00078 39.5 3.3 28 770-797 36-63 (485)
139 4dzn_A Coiled-coil peptide CC- 33.4 70 0.0024 20.2 4.0 23 772-794 7-29 (33)
140 3oja_B Anopheles plasmodium-re 33.3 94 0.0032 35.4 8.8 29 810-838 552-580 (597)
141 2v71_A Nuclear distribution pr 33.2 1.6E+02 0.0054 28.2 8.7 23 773-795 48-70 (189)
142 1ic2_A Tropomyosin alpha chain 33.2 1.2E+02 0.004 24.7 6.8 28 809-836 41-68 (81)
143 4abm_A Charged multivesicular 32.8 2E+02 0.0067 23.3 8.4 66 772-840 11-76 (79)
144 4gkw_A Spindle assembly abnorm 32.8 80 0.0027 27.8 5.9 55 773-831 59-113 (167)
145 1h7c_A Tubulin-specific chaper 32.5 1.1E+02 0.0039 26.4 6.9 63 775-839 15-82 (108)
146 2lw9_A Unconventionnal myosin- 32.1 64 0.0022 23.3 4.2 26 774-799 6-31 (51)
147 1u00_A HSC66, chaperone protei 32.0 1.2E+02 0.0041 29.9 8.2 54 783-838 145-203 (227)
148 3u06_A Protein claret segregat 31.9 1.1E+02 0.0036 33.4 8.3 56 772-841 8-63 (412)
149 4dci_A Uncharacterized protein 31.7 1.7E+02 0.0057 26.9 8.2 64 772-838 34-106 (150)
150 3d5a_X RF1, peptide chain rele 31.5 71 0.0024 33.8 6.5 26 807-832 67-92 (354)
151 2f1m_A Acriflavine resistance 31.2 1.6E+02 0.0054 29.6 9.2 58 777-838 70-127 (277)
152 3na7_A HP0958; flagellar bioge 30.8 1.1E+02 0.0037 30.9 7.7 29 771-799 57-85 (256)
153 3i00_A HIP-I, huntingtin-inter 30.5 2E+02 0.0068 25.4 8.2 49 771-829 12-60 (120)
154 1i6z_A BAG-family molecular ch 30.4 2.1E+02 0.0072 25.7 8.3 61 771-839 25-86 (135)
155 4e81_A Chaperone protein DNAK; 30.1 1.7E+02 0.0057 28.7 8.7 51 786-838 151-206 (219)
156 2fxo_A Myosin heavy chain, car 30.1 1.1E+02 0.0037 27.4 6.7 26 776-801 36-61 (129)
157 1lwu_C Fibrinogen gamma chain; 29.9 72 0.0025 33.4 6.2 23 815-837 32-54 (323)
158 1gmj_A ATPase inhibitor; coile 29.7 2.3E+02 0.0079 23.2 9.2 30 808-837 50-79 (84)
159 1hx1_B BAG-1, BAG-family molec 29.7 1.5E+02 0.005 25.8 6.9 62 770-839 14-76 (114)
160 3iv1_A Tumor susceptibility ge 29.4 1.6E+02 0.0056 23.8 6.7 65 773-838 10-75 (78)
161 3ol1_A Vimentin; structural ge 28.9 1.1E+02 0.0037 27.0 6.4 27 773-799 33-59 (119)
162 3iox_A AGI/II, PA; alpha helix 28.9 1.2E+02 0.0042 33.2 7.9 27 811-837 82-108 (497)
163 3aii_A Glutamyl-tRNA synthetas 28.8 46 0.0016 37.7 4.8 47 56-106 144-190 (553)
164 2yy0_A C-MYC-binding protein; 28.6 78 0.0027 23.6 4.5 28 772-799 24-51 (53)
165 3qh9_A Liprin-beta-2; coiled-c 28.4 1.9E+02 0.0064 23.5 6.8 29 771-799 23-51 (81)
166 3t98_B Nucleoporin NUP58/NUP45 28.3 2.6E+02 0.009 23.4 9.1 65 773-837 11-79 (93)
167 3afh_A Glutamyl-tRNA synthetas 28.0 67 0.0023 35.8 6.0 81 15-107 34-129 (488)
168 2ic6_A Nucleocapsid protein; h 27.7 1.8E+02 0.0061 23.5 6.6 64 767-830 5-73 (78)
169 3u59_A Tropomyosin beta chain; 27.2 2.1E+02 0.0071 24.2 7.7 55 774-835 44-98 (101)
170 2dq3_A Seryl-tRNA synthetase; 26.8 1.5E+02 0.005 32.4 8.4 69 768-836 31-102 (425)
171 2djv_A Methionyl-tRNA syntheta 26.8 2.5E+02 0.0086 22.7 8.2 50 772-829 11-60 (79)
172 3iox_A AGI/II, PA; alpha helix 26.6 94 0.0032 34.2 6.5 19 817-835 67-85 (497)
173 1t3j_A Mitofusin 1; coiled coi 26.5 1.7E+02 0.0058 24.7 6.6 16 779-794 52-67 (96)
174 3tnu_B Keratin, type II cytosk 26.5 1.8E+02 0.0063 25.8 7.6 23 776-798 45-67 (129)
175 3tnu_A Keratin, type I cytoske 26.2 1.9E+02 0.0064 25.8 7.6 29 771-799 42-70 (131)
176 3a7p_A Autophagy protein 16; c 25.9 1E+02 0.0036 28.2 5.7 58 773-837 67-124 (152)
177 1t6f_A Geminin; coiled-coil, c 25.7 89 0.003 21.0 3.7 25 771-795 4-28 (37)
178 3nmd_A CGMP dependent protein 25.5 2.5E+02 0.0087 22.3 7.7 32 808-839 39-70 (72)
179 2ic9_A Nucleocapsid protein; h 25.1 2.6E+02 0.0088 23.5 7.4 65 767-831 5-74 (96)
180 3al0_C Glutamyl-tRNA(Gln) amid 25.0 86 0.003 35.9 6.3 81 15-107 138-233 (592)
181 3sja_C Golgi to ER traffic pro 24.9 47 0.0016 25.9 2.7 25 777-801 35-59 (65)
182 1wle_A Seryl-tRNA synthetase; 24.8 55 0.0019 36.7 4.5 29 770-798 73-101 (501)
183 3lss_A Seryl-tRNA synthetase; 24.2 1.2E+02 0.004 33.7 7.0 25 811-835 113-137 (484)
184 2pnv_A Small conductance calci 24.1 1.3E+02 0.0045 21.4 4.7 31 809-839 9-39 (43)
185 4fi5_A Nucleoprotein; structur 24.0 2.8E+02 0.0096 23.9 7.5 65 770-834 25-94 (113)
186 1bb1_B Designed, thermostable 23.7 1.4E+02 0.0049 19.2 4.3 29 811-839 4-32 (36)
187 2zqm_A Prefoldin beta subunit 23.3 2.9E+02 0.01 23.6 8.3 36 802-837 63-98 (117)
188 1kd8_A GABH AIV, GCN4 acid bas 22.7 1.3E+02 0.0044 20.3 4.0 27 772-798 6-32 (36)
189 2wy7_Q SBI, IGG-binding protei 22.7 1.9E+02 0.0064 22.0 5.5 56 770-825 12-73 (80)
190 3he4_A Synzip6; heterodimeric 22.1 90 0.0031 22.1 3.4 28 772-799 22-49 (56)
191 2gd5_A Charged multivesicular 22.0 1.6E+02 0.0056 27.8 6.7 69 772-841 26-96 (179)
192 2q6q_A Spindle POLE BODY compo 21.8 2.9E+02 0.0097 21.5 7.7 46 777-836 6-51 (74)
193 1a92_A Delta antigen; leucine 21.6 1.8E+02 0.0062 21.0 4.9 23 815-837 13-35 (50)
194 1lwu_C Fibrinogen gamma chain; 21.5 1.9E+02 0.0064 30.3 7.4 47 772-832 10-56 (323)
195 4b6x_A AVRRPS4, avirulence pro 21.0 3.3E+02 0.011 21.9 7.6 58 778-837 26-83 (90)
196 3etw_A Adhesin A; antiparallel 20.9 3.5E+02 0.012 23.7 7.9 21 816-836 75-95 (119)
197 2akf_A Coronin-1A; coiled coil 20.8 1.6E+02 0.0056 18.8 4.0 23 773-795 5-27 (32)
198 3etw_A Adhesin A; antiparallel 20.8 3.4E+02 0.012 23.8 7.7 61 778-839 45-105 (119)
199 2e7s_A RAB guanine nucleotide 20.6 26 0.00088 31.6 0.6 72 768-839 40-133 (135)
200 2ja2_A Glutamyl-tRNA synthetas 20.5 1.2E+02 0.0041 33.9 6.1 80 15-106 15-109 (498)
201 1zme_C Proline utilization tra 20.4 1.1E+02 0.0037 23.6 4.3 27 773-799 43-69 (70)
202 1kd8_B GABH BLL, GCN4 acid bas 20.3 2E+02 0.007 19.3 4.6 15 816-830 15-29 (36)
203 2yy0_A C-MYC-binding protein; 20.2 1.4E+02 0.0049 22.1 4.5 29 809-837 19-47 (53)
204 3lay_A Zinc resistance-associa 20.2 3.3E+02 0.011 25.6 8.2 51 780-830 84-134 (175)
205 3swf_A CGMP-gated cation chann 20.2 3.3E+02 0.011 21.7 6.9 20 779-798 5-24 (74)
206 2b5u_A Colicin E3; high resolu 20.2 2.5E+02 0.0084 30.8 8.0 21 761-781 282-302 (551)
207 1tjl_A DNAK suppressor protein 20.2 2.8E+02 0.0096 25.4 7.6 66 772-837 37-108 (151)
208 3ol1_A Vimentin; structural ge 20.1 3.4E+02 0.012 23.7 7.9 28 772-799 18-45 (119)
209 3caz_A BAR protein; thermo-aci 20.0 3.6E+02 0.012 25.3 8.1 53 773-825 97-165 (294)
210 3lnn_A Membrane fusion protein 20.0 3E+02 0.01 28.7 9.1 62 772-837 96-157 (359)
211 2dq0_A Seryl-tRNA synthetase; 20.0 1.8E+02 0.0062 32.0 7.4 64 774-837 31-97 (455)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=7.1e-183 Score=1641.00 Aligned_cols=795 Identities=42% Similarity=0.765 Sum_probs=734.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+||+.|.++|++++++||++|+++||+|++++++.|++||++||+|+||+|+|
T Consensus 63 i~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~ 142 (862)
T 1gax_A 63 LIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREA 142 (862)
T ss_dssp HHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCE
T ss_pred HHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCc
Confidence 58999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
+||||.|+++|+|+|.+||++||||||.++|||||.|+|+|||+||+|++..|.++||+|++.++ .+|+|||||||||+
T Consensus 143 ~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~~~~~-~~l~v~TTrPeTl~ 221 (862)
T 1gax_A 143 FTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPTPGKLYTLRYEVEGG-GFIEIATVRPETVF 221 (862)
T ss_dssp ETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCEEEEEEEEECCCSSS-CCCEEEESCSGGGT
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccccceEEEEEEEecCC-CEEEEEeCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999876 79999999999999
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
||+||||||+|+||++|+|++|.||+. ++.+|||+|+||++++|||+||+|||||++||++|++||||+++++|++|++
T Consensus 222 g~~avav~P~~~ry~~l~G~~~~~P~~-~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~ 300 (862)
T 1gax_A 222 ADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM 300 (862)
T ss_dssp TCCCEEECSSCCTTCSCTTCCCBCTTC-CCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBB
T ss_pred cceEEEECCCccHHHHHcCCEEECCCC-CCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCcc
Confidence 999999999999999999999999994 8999999999999999999999999999999999999999999999999999
Q ss_pred cccC--CCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCee
Q 003160 241 NEVA--GLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 318 (843)
Q Consensus 241 ~~~~--g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~ 318 (843)
++++ |+|.|+++++||+.|++.|+++|++.+.+++.|++|+|||||+||++++++|||++++++++++++++++++++
T Consensus 301 ~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~ 380 (862)
T 1gax_A 301 EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIA 380 (862)
T ss_dssp CSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCE
T ss_pred ccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCce
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHH--HhhhcCCCceeEecCCCceEEE
Q 003160 319 IMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEK--AHQKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 319 ~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dvlD~WF 396 (843)
|+|+++++++.+||++++||||||||+||||||+|+|++ ++...+.. .+++... ....||. ..+.|++|||||||
T Consensus 381 ~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~-~~~i~v~~-~~~l~~~~~~~~~~g~-~~~~r~~DvlDtWf 457 (862)
T 1gax_A 381 FVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCED-CQAVNVPR-PERYLEDPTSCEACGS-PRLKRDEDVFDTWF 457 (862)
T ss_dssp ESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETT-TCCEECCC-GGGTTCCCCSCTTTCC-SCEEECCCCBCHHH
T ss_pred EcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCC-CCEEEEec-cccccccchhhhhcCc-hheecCCcccceee
Confidence 999999999999999999999999999999999999964 34444433 1111000 0112332 36899999999999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 476 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNv 476 (843)
|||+||++++|||.++ ++|++|||+|++++|+||+|||+++|+++++.+.|+.||++|++||+|+|.+|+|||||+||+
T Consensus 458 dS~~~~~~~~~~p~~~-~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNv 536 (862)
T 1gax_A 458 SSALWPLSTLGWPEET-EDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNV 536 (862)
T ss_dssp HHTSCTTGGGTTTSCC-HHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCC
T ss_pred ccCCcchhhccCCCch-HHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCC
Confidence 9999999999999776 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhh
Q 003160 477 IDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECL 555 (843)
Q Consensus 477 I~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (843)
|+|.++|++||+|++||||++.++ ++|++|+++.+.+.++|+|++||++||+.+++.++.+. .
T Consensus 537 IdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~----------------~ 600 (862)
T 1gax_A 537 IDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK----------------E 600 (862)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC----------------B
T ss_pred CCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----------------c
Confidence 999999999999999999999766 99999999999999999999999999998887653220 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHH
Q 003160 556 CKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENI 635 (843)
Q Consensus 556 ~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~ 635 (843)
..++..|+|++++++.++++++++|++|+|+.|++.+++|+|+++||||++.+|||++++ +++++.+++++|+.+
T Consensus 601 ~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~-----~~~~~~~l~~~l~~~ 675 (862)
T 1gax_A 601 DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG-----NAHTLRTLEEVLAVL 675 (862)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT-----BHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc-----HHHHHHHHHHHHHHH
Confidence 235678999999999999999999999999999999999999999999999999998763 356788999999999
Q ss_pred HHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeEEEecCHH
Q 003160 636 LKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISASIVANEE 715 (843)
Q Consensus 636 l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~~i~~~~~ 715 (843)
++||||||||+|||||+.|+. ++||+.++||+++ ..|+.++..|+.++++++++|++|++.+|++++++.+.+. + +
T Consensus 676 ~~lL~P~~P~~aEeiw~~L~~-~~sv~~~~wP~~~-~~d~~~~~~~~~~~~v~~~~r~~r~~~~i~~~~~~~~~v~-~-~ 751 (862)
T 1gax_A 676 LKLLHPMMPFLTSELYQALTG-KEELALEAWPEPG-GRDEEAERAFEALKQAVTAVRALKAEAGLPPAQEVRVYLE-G-E 751 (862)
T ss_dssp HHHHTTTSHHHHHHHHHHHHC-CSCGGGSCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCEEEEEE-E-S
T ss_pred HHHHhhhhhHHHHHHHHhcCC-CCeEEecCCCCCC-cCCHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCeeEEEEe-C-h
Confidence 999999999999999999985 4699999999987 4688999999999999999999999999999999987765 2 2
Q ss_pred HHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEecCCeEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 716 VIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVASEGLEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 716 ~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
. ..++....+|+.++++.. | . +.|.+++..+ .++.++|+++.+.||+++|++||+|++++++++++++++
T Consensus 752 ~-~~~~~~~~~i~~~~~~~~--~---~---~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~ 821 (862)
T 1gax_A 752 T-APVEENLEVFRFLSRADL--L---P---ERPAKALVKA-MPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQR 821 (862)
T ss_dssp C-HHHHHTHHHHHHHHCEEE--C---S---SCCSSEEEEE-CSSEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhCccc--c---c---cccccceEEe-cCCcEEEEEeccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 556777788998987753 2 1 2355677654 468999999999999999999999999999999999999
Q ss_pred HhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 796 RLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 796 kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
||+|++|++|||++||+++|+|++++++++++++++|+.|+
T Consensus 822 ~l~~~~f~~~ap~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (862)
T 1gax_A 822 KLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG 862 (862)
T ss_dssp HHTSTTTSSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccCchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998763
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1e-151 Score=1381.79 Aligned_cols=707 Identities=24% Similarity=0.419 Sum_probs=625.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||||||.+|++. |++++++++++|+++|++|++++++.|++||++||+++||+|+|
T Consensus 77 i~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~----G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~ 152 (917)
T 1ffy_A 77 IVRYKTMQGFYAPYVPGWDTHGLPIEQALTKK----GVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPY 152 (917)
T ss_dssp HHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHH----TCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCE
T ss_pred HHHHHHhCCCCCCCcccCchhhHHHHHHHHHc----CCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCe
Confidence 58999999999999999999999999988764 99999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecC------CCeEEEEEeC
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAG------RSDFLTIATT 154 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~------~~~~l~v~Tt 154 (843)
+||||.|+++|+|+|.+||++||||||.++|+|||.|+|+|||+||+|++..++++||+|++.+ ++.+++||||
T Consensus 153 ~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~~~v~f~~~~~~g~~~~~~~~~i~TT 232 (917)
T 1ffy_A 153 ITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTT 232 (917)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEEEECCBCCCSSTTGGGTTCCBCCEES
T ss_pred EcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCceEEEEEEecccccccCCCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999976 3679999999
Q ss_pred CccccccCcEEEEcCC---------Cc-------------------hhh----------hhcccEEEcCCCCCCeeeEEe
Q 003160 155 RPETLFGDVALAVNPQ---------DE-------------------HYS----------QFIGMMAIVPMTYGRHVPIIS 196 (843)
Q Consensus 155 rPeTl~g~~ai~v~P~---------~~-------------------~y~----------~l~g~~~~~P~~~~~~ipii~ 196 (843)
||||||||+||||||+ ++ +|+ +|+|+++.||| .++.+|||+
T Consensus 233 rP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~-~~~~~pvi~ 311 (917)
T 1ffy_A 233 TPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPF-LDRESLVIN 311 (917)
T ss_dssp CGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCCCCTTTCTTCCCBCCT-TCCSBCCCC
T ss_pred CcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeeeeecccccCCEEECCC-CCCeeeEEe
Confidence 9999999999999998 32 454 68999999999 589999999
Q ss_pred CCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeecccc
Q 003160 197 DKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHT 276 (843)
Q Consensus 197 ~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~ 276 (843)
++||++++|||+||+|||||++||++|++||||+++++|++|.+++++|.|+|+++++||+.|++.|+++|.+++.+++.
T Consensus 312 ~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~ 391 (917)
T 1ffy_A 312 GDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFIT 391 (917)
T ss_dssp CCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEE
T ss_pred ccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEc
Q 003160 277 LRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIV 356 (843)
Q Consensus 277 ~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~ 356 (843)
|+||||||||+||++++++|||++++++++++++++++ ++|+|++.++++.+||++++||||||||+||+|||+|+|+
T Consensus 392 hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~--~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~ 469 (917)
T 1ffy_A 392 HSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIEN--TNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAE 469 (917)
T ss_dssp EEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHT--SEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECT
T ss_pred ccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhc--CcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCC
Confidence 99999999999999999999999999999999999984 8999999999999999999999999999999999999985
Q ss_pred CCcccEEEecCh----hHHHH--------------HHhhh--c--CCCceeEecCCCceEEEecCcccccccCCCCCChh
Q 003160 357 GKEEEYIVARNA----DEALE--------------KAHQK--Y--GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAD 414 (843)
Q Consensus 357 ~~~~~~~~~~~~----~~~~~--------------~~~~~--~--~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~ 414 (843)
+ +...+..+. .+... ..+.. | ++...+.|++||||||||||++|++.+++..
T Consensus 470 ~--g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~~---- 543 (917)
T 1ffy_A 470 N--GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRP---- 543 (917)
T ss_dssp T--SCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTST----
T ss_pred C--CCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCch----
Confidence 3 222221110 00000 00000 1 1123689999999999999999998887642
Q ss_pred hhhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHH
Q 003160 415 DFKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFT 494 (843)
Q Consensus 415 ~~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~ 494 (843)
++ .||+|++++|+||+|||++++++.+.++.|..||++|++||||+|.+|+|||||+||+|+|.+++++||+|++|||
T Consensus 544 ~~--~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~ 621 (917)
T 1ffy_A 544 EL--SFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLW 621 (917)
T ss_dssp TC--CSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHH
T ss_pred hc--CCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHH
Confidence 33 3999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHH
Q 003160 495 ISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLID 574 (843)
Q Consensus 495 l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~ 574 (843)
++++++++|++|+++.+.+.++++++|||++||+++++.++.+... ......++..|+|++++++.+++
T Consensus 622 lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~-----------~v~~~~l~~~D~~il~~l~~~~~ 690 (917)
T 1ffy_A 622 VSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTD-----------SIPESELLEVDRYLLNRLREFTA 690 (917)
T ss_dssp HHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHH-----------CCCGGGSCHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccc-----------cCCccccCHHHHHHHHHHHHHHH
Confidence 9995559999999999999999999999999999998866542000 00112356789999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC-ChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Q 003160 575 TVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE-YDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQS 653 (843)
Q Consensus 575 ~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~-~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~ 653 (843)
+++++|++|+|+.|++.+++|+++++||+|++.+|+|++++. +...+++++.+|+.+++.+++||+|||||+|||||+.
T Consensus 691 ~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEeiw~~ 770 (917)
T 1ffy_A 691 STINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSH 770 (917)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999999999999999999977899999999999999763 2346778899999999999999999999999999999
Q ss_pred hcc-CCCceEecCCCCCCCcCCHHHHHHHHHHHH----HHHHHHhhhhhcCCCccceeeEEEecCHH--HHHHHHHHHHH
Q 003160 654 LRK-RKEALIVSPWPQTSLPRHMSAIKRFENLQS----LTRAIRNARAEYSVEPAKRISASIVANEE--VIQYISKEKEV 726 (843)
Q Consensus 654 L~~-~~~si~~~~~P~~~~~~d~~~~~~~~~~~~----vv~~ir~~r~~~~i~~~~~~~~~i~~~~~--~~~~~~~~~~~ 726 (843)
|+. .++||+.+.||+.+. .|+.+++.++.+++ +..++|.+|++.+|+++.+..+.|..+++ ..+.+... ..
T Consensus 771 l~~~~~~sv~~~~wP~~~~-~~~~l~~~~~~~~~v~~~v~~~~~~~R~~~~i~~~l~~~v~i~~~~~~~~~~~l~~~-~~ 848 (917)
T 1ffy_A 771 TPHVKEESVHLADMPKVVE-VDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSF-DA 848 (917)
T ss_dssp STTCSSSSGGGSCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSGGGEEEEEECCSSCCHHHHGGGC-SC
T ss_pred cccCCCCCeEecCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEeCChhhHHHHHhhH-HH
Confidence 985 246999999999875 57788888888876 46688999999999877766666653333 44445443 45
Q ss_pred HHHHcCCcc
Q 003160 727 LALLSRLDL 735 (843)
Q Consensus 727 i~~l~~~~~ 735 (843)
|..+..++.
T Consensus 849 l~~~~~~s~ 857 (917)
T 1ffy_A 849 LHQLFIVSQ 857 (917)
T ss_dssp HHHHTTSSE
T ss_pred HHHHhcccc
Confidence 666766654
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.8e-148 Score=1350.24 Aligned_cols=680 Identities=27% Similarity=0.474 Sum_probs=612.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCC----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKR----VELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDW 76 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~----~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw 76 (843)
++||+||+||+|+|++||||||||||.+|+|.+ |+++ .++|+++|++.|++|++++++.|++||++||+|+||
T Consensus 67 i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l---~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dw 143 (821)
T 1ile_A 67 FPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKL---GLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDL 143 (821)
T ss_dssp HHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHT---TCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEE
T ss_pred HHHHHHhcCCcccccccccCCCchHHHHHHHHh---cccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEcc
Confidence 589999999999999999999999999887653 5544 468999999999999999999999999999999999
Q ss_pred cCccccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccc--ccccCCeEEEEEEEecCC------CeE
Q 003160 77 TRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE--YSEEPGTLYYIKYRVAGR------SDF 148 (843)
Q Consensus 77 ~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~--~~~~~~~~~~~~~~~~~~------~~~ 148 (843)
+|+|+||||.|+++|||+|.+||++|||||+.++|+|||.|+|+|||+||+ |++..++++||+|++.+. +.+
T Consensus 144 d~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~~~~v~f~~~~~~~~~~~~~~ 223 (821)
T 1ile_A 144 EDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPKKLGLEKAS 223 (821)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEEEEEEEEEBSSGGGGTCSSEE
T ss_pred CCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCceEEEEEEecCCcccCCCCCE
Confidence 999999999999999999999999999999999999999999999999994 899999999999999875 689
Q ss_pred EEEEeCCccccccCcEEEEcCC---------Cchh-----------------------hhhcccEEEcCCCC--CCeeeE
Q 003160 149 LTIATTRPETLFGDVALAVNPQ---------DEHY-----------------------SQFIGMMAIVPMTY--GRHVPI 194 (843)
Q Consensus 149 l~v~TtrPeTl~g~~ai~v~P~---------~~~y-----------------------~~l~g~~~~~P~~~--~~~ipi 194 (843)
|+||||||||||||+||||||+ +++| ++|+|+.+.|||.. ++.+||
T Consensus 224 l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi 303 (821)
T 1ile_A 224 LLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFV 303 (821)
T ss_dssp EEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEEEECHHHHTTCBBCCSSCCCCSSCSBE
T ss_pred EEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEEEechHHhcCCEEEcCCcccCCCEEEE
Confidence 9999999999999999999999 4554 47899999999953 799999
Q ss_pred EeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeecc
Q 003160 195 ISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEP 274 (843)
Q Consensus 195 i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~ 274 (843)
++++||++++|||+||+|||||++||++|++||||+++++|++|++++. | |+|+++++||+.|++.|+++|++++.++
T Consensus 304 ~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~ 381 (821)
T 1ile_A 304 VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEES 381 (821)
T ss_dssp EECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeec
Confidence 9999999999999999999999999999999999999999999999987 7 9999999999999999999999999999
Q ss_pred ccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEecchh-HHHHHHHhhCCCceeeeeecccCCCCceE
Q 003160 275 HTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIMPERF-EKIYNHWLSNIKDWCISRQLWWGHRIPVW 353 (843)
Q Consensus 275 ~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~~~~l~~l~DW~ISRq~~WG~pIP~~ 353 (843)
+.|++|+|||||+||++++++||||+++++++++++++++ ++|+|+.. ++++.+||++++||||||||+||||||+|
T Consensus 382 ~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~--~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~ 459 (821)
T 1ile_A 382 YLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIW 459 (821)
T ss_dssp EEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHH--SEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEE
T ss_pred ccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcC--eEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEE
Confidence 9999999999999999999999999999999999999975 78999998 56899999999999999999999999999
Q ss_pred EEcCCcccEEEecChhHHHHHHhh------------------hcCCCceeEecCCCceEEEecCcccccccCCCCCChhh
Q 003160 354 YIVGKEEEYIVARNADEALEKAHQ------------------KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVSADD 415 (843)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~~~~ 415 (843)
+|++ ++...+.++..++...... .|..+..++|++||||||||||++|+++++||.+++++
T Consensus 460 ~~~~-~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~ 538 (821)
T 1ile_A 460 VCQA-CGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEV 538 (821)
T ss_dssp EESS-SSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHH
T ss_pred EecC-CCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccchHhhcCCCccchHH
Confidence 9965 4556666666555221100 01112468999999999999999999999999876578
Q ss_pred hhhcCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHH
Q 003160 416 FKKFYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTI 495 (843)
Q Consensus 416 ~~~~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l 495 (843)
|++|||+|++++|+||+|||+++|++++.++.+..||++|++||+|++.+|+|||||+||+|+|.+++++||+|++||||
T Consensus 539 f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~l 618 (821)
T 1ile_A 539 FRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYI 618 (821)
T ss_dssp HHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHH
T ss_pred HhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCc-ccccccCHHHHHH-HHHHHHHHHHHHHHHHh--cCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHH
Q 003160 496 SLGTA-GQDLSLSIERLTA-NKAFTNKLWNAGKFILQ--NLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHM 571 (843)
Q Consensus 496 ~~~~~-~~D~~f~~~~~~~-~~~~~nkl~N~~rf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~ 571 (843)
++.++ ++|++||++.+.+ +++++++|||+++|+.. ++.++.+. . ......++..|+|++++++.
T Consensus 619 l~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~d~~ll~~l~~ 686 (821)
T 1ile_A 619 YVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLK-----------N-PPPPEKRPEMDRWLLARMQD 686 (821)
T ss_dssp HHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-----------S-CCCSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc-----------c-ccccccCCHHHHHHHHHHHH
Confidence 99876 9999999999999 69999999999998642 22221100 0 00012346789999999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHH
Q 003160 572 LIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELW 651 (843)
Q Consensus 572 ~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw 651 (843)
+++++.++|++|+|+.|++.+++|+|+++||+|++.+|+++++.....++++++.+++.+|+.+++||+|||||+|||||
T Consensus 687 ~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~aeelw 766 (821)
T 1ile_A 687 LIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLW 766 (821)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHH
Confidence 99999999999999999999999998999999999999988765322245578889999999999999999999999999
Q ss_pred HHhccC----CC-ceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 003160 652 QSLRKR----KE-ALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIRNARAEYSV 700 (843)
Q Consensus 652 ~~L~~~----~~-si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i 700 (843)
+.|+.. .+ ||+.++||+++. +.|+++++.|+.++++++.+|++|++++|
T Consensus 767 ~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 767 QNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLARAARAKSGV 821 (821)
T ss_dssp HHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHTTCTTSCCC
T ss_pred HhccccccCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999863 35 999999999884 67999999999999999999999998875
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.5e-130 Score=1205.24 Aligned_cols=660 Identities=21% Similarity=0.334 Sum_probs=549.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCC--------CCcccCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI--------KRVELSRDEF--TKRVWEWKEKYGGTITSQIKRL 70 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~--------~~~~~~~~~f--~~~~~~~~~~~~~~~~~q~~~l 70 (843)
++||+||+||+|+|+|||||||+|+|..+++... |. ....++++++ ...|++|++++++.+++||++|
T Consensus 63 i~Ry~rm~G~~Vl~~~GwD~~GlPie~~a~~~~~--~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 140 (967)
T 1wz2_A 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKN--RDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRA 140 (967)
T ss_dssp HHHHHHHTTCCCBCCCCBBCCSSHHHHHHHHHHT--TCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCccCCCCcCCCCCcHHHHHHHHhhc--cchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999988875321 10 0112334433 2469999999999999999999
Q ss_pred cccccCcCccccCc--hhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC--CeEEEEEEEecCC-
Q 003160 71 GASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGR- 145 (843)
Q Consensus 71 G~~~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~--~~~~~~~~~~~~~- 145 (843)
|+|+||+|+|+||| |.|+++|||+|.+||++||||||.++|+|||.|+|+|||+||++++.. +..++|+|++.++
T Consensus 141 G~~~Dw~r~~~T~d~np~y~~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~ 220 (967)
T 1wz2_A 141 GFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENG 220 (967)
T ss_dssp TCCCCTTSCCBCSTTSHHHHHHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSS
T ss_pred CceEecCCCeEECCCChhHHHHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCC
Confidence 99999999999999 999999999999999999999999999999999999999999987654 4568999999775
Q ss_pred -CeEEEEEeCCccccccCcEEEEcCC---------C----c------------hhh-------------hhcccEEEcCC
Q 003160 146 -SDFLTIATTRPETLFGDVALAVNPQ---------D----E------------HYS-------------QFIGMMAIVPM 186 (843)
Q Consensus 146 -~~~l~v~TtrPeTl~g~~ai~v~P~---------~----~------------~y~-------------~l~g~~~~~P~ 186 (843)
+.+++|||||||||+||+||||||+ + + +|+ +|+|++|.||+
T Consensus 221 ~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~ 300 (967)
T 1wz2_A 221 EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV 300 (967)
T ss_dssp SCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSS
T ss_pred CceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCC
Confidence 3799999999999999999999999 4 3 232 69999999999
Q ss_pred CCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHH----------HHHhCCC--------ceeeccC------------
Q 003160 187 TYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK------------ 236 (843)
Q Consensus 187 ~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~~l~--------~~~~i~~------------ 236 (843)
. ++.+||++++||++++|||+||+|||||++||++ |++|||| ++++|+.
T Consensus 301 ~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~ 379 (967)
T 1wz2_A 301 S-GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEV 379 (967)
T ss_dssp S-SCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCT
T ss_pred C-CCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhh
Confidence 5 8999999999999999999999999999999985 5788977 6776532
Q ss_pred ---------------------------CCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCee
Q 003160 237 ---------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 289 (843)
Q Consensus 237 ---------------------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v 289 (843)
+|+|+ +|+|+|+.++|||+.|++.|+++|++.+.+++.| +|+|||||+|+
T Consensus 380 ~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~ 456 (967)
T 1wz2_A 380 NKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRA 456 (967)
T ss_dssp TTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBC
T ss_pred hhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEE
Confidence 57776 7899999999999999999999999998766654 79999999999
Q ss_pred EEe-eccceeEecch--HHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCce---EEEcCCcc-c-
Q 003160 290 EPL-VSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPV---WYIVGKEE-E- 361 (843)
Q Consensus 290 ~~~-~~~QWFl~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~---~~~~~~~~-~- 361 (843)
+++ +++||||++++ ++++++++++ +++|+|+..++++.+||++++||||||||+||||||+ |.+++.++ .
T Consensus 457 i~~~~~~qWFi~~~~~~~k~~~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~i 534 (967)
T 1wz2_A 457 VIKIIHDQWFIDYGNPEWKEKARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTI 534 (967)
T ss_dssp EECCCSSCEEEESCCTTHHHHHHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTS
T ss_pred EEeccCCccceecCchHHHHHHHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccccccCCCCce
Confidence 999 69999999994 9999999996 4789999999999999999999999999999999995 55532111 1
Q ss_pred EEEecChhHHHHHHhhhcCC-CceeEecCCCceEEEec----Cc-cccc-ccCCCCCC----hhhhhhcCCCcEEEEeeh
Q 003160 362 YIVARNADEALEKAHQKYGK-NVEIYQDPDVLDTWFSS----AL-WPFS-TLGWPDVS----ADDFKKFYPTTMLETGHD 430 (843)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dvlD~WFdS----~l-~~~~-~~g~p~~~----~~~~~~~~P~d~~~~G~D 430 (843)
|+......+....+....|. ...+ .++++|+||.+ |. +++. ..|||... +++|++|||+|+|++|+|
T Consensus 535 Yv~~~~~~~~~~~~~~~~g~~~~~l--~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~Di~~~G~D 612 (967)
T 1wz2_A 535 YMAYYTISRHINKLRQEGKLDPEKL--TPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKD 612 (967)
T ss_dssp THHHHHHHHHHHHHHHTTCCCGGGC--CHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSCSEEEEEGG
T ss_pred EeehhhhhhHHHHHHHhcCCChHHc--CcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCCeEEeeeeC
Confidence 21111111111111111111 1111 35899999864 22 2221 46787542 367999999999999999
Q ss_pred hhhhHHHHHHHHHhHhhCCCCc-eEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCH
Q 003160 431 ILFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSI 508 (843)
Q Consensus 431 i~~~W~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~ 508 (843)
|++||..++++++.++.+..|| +.+++||||++ +|+|||||+||+|+|.+++++||||++||||+++++ ++|++|++
T Consensus 613 ~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~~d~~fs~ 691 (967)
T 1wz2_A 613 LIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRR 691 (967)
T ss_dssp GTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECH
T ss_pred cchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCCCCcccCH
Confidence 9999999998888888776555 99999999995 999999999999999999999999999999986655 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHH
Q 003160 509 ERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDV 588 (843)
Q Consensus 509 ~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a 588 (843)
+.+.+.+++++++||+++++.++. .+ ....++..|+|++++++.++++++++|++|+|+.|
T Consensus 692 ~~~~~~~~~l~rl~n~~~~~~~~~---~~----------------~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A 752 (967)
T 1wz2_A 692 KEVGKLRKQIERFYELISQFAEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTA 752 (967)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSC---CC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CC----------------CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999886531 10 01234678999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCC
Q 003160 589 GRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQ 668 (843)
Q Consensus 589 ~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~ 668 (843)
+..++.+++ ..+|+|++.+|++ + +++++.+++++|+.+++||+|||||+|||||+.|+. ++||+.++||+
T Consensus 753 ~~~~~~~l~-~~~n~Yi~~~k~~-----~---~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~-~~sv~~~~wP~ 822 (967)
T 1wz2_A 753 VQWAFYSIM-NDLRWYLRRTEGR-----D---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG-EGFVSLAKWPE 822 (967)
T ss_dssp HHHHTHHHH-HHHHHHHHHTTTC-----C---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC-CSCGGGSCCCC
T ss_pred HHHHHHHHH-HHHHHHHHhccch-----h---HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCC-CCceeccCCCC
Confidence 998866665 4589999998853 1 236778999999999999999999999999999975 46999999999
Q ss_pred CCC-cCCHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 003160 669 TSL-PRHMSAIKRFENLQSLTRAIRNARAEYSV 700 (843)
Q Consensus 669 ~~~-~~d~~~~~~~~~~~~vv~~ir~~r~~~~i 700 (843)
++. +.|++++..|+.++++++.+|++|++.++
T Consensus 823 ~~~~~~d~~~~~~~~~~~~~~~~vr~~~~~~~~ 855 (967)
T 1wz2_A 823 PVEEWWNETIEAEEEFIRSVMEDIKEIIEVAKI 855 (967)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 884 67999999999999999999999999998
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.5e-119 Score=1084.33 Aligned_cols=621 Identities=24% Similarity=0.404 Sum_probs=486.0
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|||..+ .+.|+++. +|++++++.|++||++||+++||+|+|
T Consensus 82 laRy~rm~G~~V~~~~G~D~~Glpie~~a----~~~g~~p~------------~~~~~~i~~~~~~l~~LGis~Dw~~~~ 145 (880)
T 4arc_A 82 IARYQRMLGKNVLQPIGWDAFGLPAEGAA----VKNNTAPA------------PWTYDNIAYMKNQLKMLGFGYDWSREL 145 (880)
T ss_dssp HHHHHHHTTCEEECCCEECCCSTHHHHHH----HHTTSCHH------------HHHHHHHHHHHHHHHHTTCCCCGGGCE
T ss_pred HHHHHHHcCCceEEecCccccCcHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCCcCCCCCE
Confidence 58999999999999999999999976654 45677653 689999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCccccc------------cccc-----------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE----------------- 131 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~------------~~~~----------------- 131 (843)
+|+||.|.++|+|+|.+|+++||||++.++|+|||.|+|+|||+||. +++.
T Consensus 146 ~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~ 225 (880)
T 4arc_A 146 ATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLND 225 (880)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHH
Confidence 99999999999999999999999999999999999999999997763 3321
Q ss_pred --------------------CCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhhhh--------------
Q 003160 132 --------------------PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF-------------- 177 (843)
Q Consensus 132 --------------------~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l-------------- 177 (843)
.+..++|+|++.+++.+|+|||||||||+|++||||||++++++.+
T Consensus 226 l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~ 305 (880)
T 4arc_A 226 LDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDEC 305 (880)
T ss_dssp GGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC-
T ss_pred HhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHH
Confidence 1245789999988888999999999999999999999999987543
Q ss_pred -------------------cccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccC--
Q 003160 178 -------------------IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-- 236 (843)
Q Consensus 178 -------------------~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~-- 236 (843)
+|+++.|||+ |+.+||+.++||++++|||+||+|||||++||++|++||||++++|+.
T Consensus 306 ~~~~~~~~~~~~~~~~g~~~g~~~~~P~~-~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~ 384 (880)
T 4arc_A 306 RNTKVAEAEMATMEKKGVDTGFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAAD 384 (880)
T ss_dssp ---------------CEEEEEEEEECTTT-CCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTT
T ss_pred hccCchhhhhccceeeccccCcEEecCCC-CCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCc
Confidence 7899999994 899999999999999999999999999999999999999999998853
Q ss_pred -------------CCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecch
Q 003160 237 -------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEP 303 (843)
Q Consensus 237 -------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~ 303 (843)
+|.+. ++|.|.||+++|||++|++.|+++|++.+.
T Consensus 385 ~~~~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~------------------------------- 432 (880)
T 4arc_A 385 GSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK------------------------------- 432 (880)
T ss_dssp SCCCCCSSSCCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE-------------------------------
T ss_pred ccccccccccccCCceee-cCcccCCCCHHHHHHHHHHHHHHcCCccee-------------------------------
Confidence 34443 578999999999999999999999986543
Q ss_pred HHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecChh--------------
Q 003160 304 LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNAD-------------- 369 (843)
Q Consensus 304 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~-------------- 369 (843)
+.+ +++|||||||||||+|||+|+|++ |+...+..+.-
T Consensus 433 -------------v~y--------------rlrDW~iSRQRyWG~PIPi~~c~~-cg~v~v~~~~Lpv~lp~~~~~~~~g 484 (880)
T 4arc_A 433 -------------VNY--------------RLRDWGVSRQRYWGAPIPMVTLED-GTVMPTPDDQLPVILPEDVVMDGIT 484 (880)
T ss_dssp -------------EEE--------------SCCCEECEESCSSSCBCCEEEETT-SCEEECCGGGCSCCCCSSCCCCSSS
T ss_pred -------------EEE--------------EcccceeeeeeccCCcceEEEECC-CCeEeCChHHCccccchhcccCCCC
Confidence 111 479999999999999999999964 44433322110
Q ss_pred HHHHHHhh----hcCCCceeEecCCCceEEEecCcccccccCCCCCC-----hhhhhhcCCCcEEEEeeh--hhhhHHHH
Q 003160 370 EALEKAHQ----KYGKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHD--ILFFWVAR 438 (843)
Q Consensus 370 ~~~~~~~~----~~~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~-----~~~~~~~~P~d~~~~G~D--i~~~W~~~ 438 (843)
.++..... .|+ +..++||+|||||||||+ |||++++||.++ ++++++|||+|++++|.| |+++|++|
T Consensus 485 ~pl~~~~~w~~~~cp-g~~~~retDtmDtw~dSs-wy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaR 562 (880)
T 4arc_A 485 SPIKADPEWAKTTVN-GMPALRETDTFDTFMESS-WYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFR 562 (880)
T ss_dssp CHHHHSTTTTEEESS-SSEEEECCCEECTTTGGG-THHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHH
T ss_pred CchHhCccceeeccC-CCcceeCCCcCCCcccCc-HHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHH
Confidence 12222211 122 557899999999999998 999999999853 467889999999999988 55655555
Q ss_pred -----HHHHHhHhhCCCCceEEEEeeeEE-------CCCCC------------------------------------ccc
Q 003160 439 -----MVMMGIEFTGSVPFSHVYLHGLIR-------DSQGR------------------------------------KMS 470 (843)
Q Consensus 439 -----~~~~~~~~~~~~Pf~~v~~hg~v~-------d~~G~------------------------------------KMS 470 (843)
|..+++ +.++.||++|++||||+ |.+|+ |||
T Consensus 563 f~~~~L~~~g~-~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMS 641 (880)
T 4arc_A 563 FFHKLMRDAGM-VNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMS 641 (880)
T ss_dssp HHHHHHHHTTS-CCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECC
T ss_pred HHHHHHHHhhc-ccCCCChHHeEEeceEeecceeccccCCcccccCHHHhccccccccccccccccCCcccccccccccc
Confidence 444444 36789999999999996 88998 999
Q ss_pred ccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 003160 471 KTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 549 (843)
Q Consensus 471 KS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~ 549 (843)
||+||+|+|.++|++||||++|||+++.++ ++|++||++.+++.++|++++||++++..........
T Consensus 642 KSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~------------ 709 (880)
T 4arc_A 642 KSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAAL------------ 709 (880)
T ss_dssp TTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC------------
T ss_pred CcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccccc------------
Confidence 999999999999999999999999999876 9999999999999999999999999887654211000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHH
Q 003160 550 DEEECLCKAPLPECWVVSKLHMLIDTVTASYD-KYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVL 628 (843)
Q Consensus 550 ~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l 628 (843)
....++..|+|++++++.++++++++|+ +|+|+.|++.+++|+ ++++. | .+ +. ..+..++
T Consensus 710 ----~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efv-n~l~k-~---------~~-~~---~~~~~~l 770 (880)
T 4arc_A 710 ----NVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELM-NKLAK-A---------PT-DG---EQDRALM 770 (880)
T ss_dssp ----CSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHT-S---------CC-SS---HHHHHHH
T ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH-HHHHh-h---------hc-cc---hHHHHHH
Confidence 0124567899999999999999999999 899999999999998 44432 2 11 11 2356789
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCCcCCHHHHHHHHHHHHHHHHHHhhhhhcCCCccceeeE
Q 003160 629 LYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSLPRHMSAIKRFENLQSLTRAIRNARAEYSVEPAKRISA 708 (843)
Q Consensus 629 ~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~~~d~~~~~~~~~~~~vv~~ir~~r~~~~i~~~~~~~~ 708 (843)
+.+++.+++||+|||||+|||||+.|+.. +||+.++||+++ +++.. .-.-++-+.-+.+++.
T Consensus 771 ~~~l~~ll~LLaPf~PhiaEElW~~Lg~~-~sv~~~~wP~~d----~~~l~-------------~~~~~~~vqvngk~r~ 832 (880)
T 4arc_A 771 QEALLAVVRMLNPFTPHICFTLWQELKGE-GDIDNAPWPVAD----EKAMV-------------EDSTLVVVQVNGKVRA 832 (880)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHTTCS-SCGGGSCCCCCC----HHHHC-------------CSEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHcCCC-CeEEeCCCCCCC----HHHhc-------------cCceEEEEEEecceEE
Confidence 99999999999999999999999999864 699999999886 21100 0001111222233433
Q ss_pred EEe----cC-HHHHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEe
Q 003160 709 SIV----AN-EEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVA 756 (843)
Q Consensus 709 ~i~----~~-~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 756 (843)
.+. .+ +++.+...+...+.+.|.+.++.+++++ |+..|++|+
T Consensus 833 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~v------~~k~vn~v~ 879 (880)
T 4arc_A 833 KITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYV------PGKLLNLVV 879 (880)
T ss_dssp EEEEETTCCHHHHHHHHHHCHHHHTTTTTCCCCEEEEE------TTTEEEEEC
T ss_pred EEEcCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEEE------CCCEEEEEe
Confidence 332 22 3344555556667777887777788776 456676554
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=7e-118 Score=1080.13 Aligned_cols=627 Identities=25% Similarity=0.375 Sum_probs=469.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|||..++ +.|+++ ++|++++++.|++||++||+++||+|+|
T Consensus 62 l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~----k~g~~~------------~~~~~~~~~~~~~~~~~LGi~~Dw~~~~ 125 (878)
T 2v0c_A 62 LARFRRMQGYEVLHPMGWDAFGLPAENAAL----KFGVHP------------KDWTYANIRQAKESLRLMGILYDWDREV 125 (878)
T ss_dssp HHHHHHHHTCEEECCCCBCCSSHHHHHHHH----HTTCCH------------HHHHHHHHHHHHHHHHHTTCCCCGGGCC
T ss_pred HHHHHHhcCCceEeecccCcccHHHHHHHH----HcCCCH------------HHHHHHHHHHHHHHHHHhCCccCcCCCe
Confidence 489999999999999999999999876654 467664 4799999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccc--c-C-------------------------
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE--E-P------------------------- 132 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~--~-~------------------------- 132 (843)
+|+|+.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+||+++. . .
T Consensus 126 ~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~ 205 (878)
T 2v0c_A 126 TTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLK 205 (878)
T ss_dssp BTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHH
Confidence 99999999999999999999999999999999999999999999997532 1 1
Q ss_pred ---------------------CeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhhhh--------------
Q 003160 133 ---------------------GTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQF-------------- 177 (843)
Q Consensus 133 ---------------------~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l-------------- 177 (843)
+..++|+|++.+.+.+|+|||||||||+|++||||||++++++.+
T Consensus 206 ~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~ 285 (878)
T 2v0c_A 206 DLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVE 285 (878)
T ss_dssp TTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHH
T ss_pred HhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHH
Confidence 135678999988788999999999999999999999999987543
Q ss_pred ---------------------cccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccC
Q 003160 178 ---------------------IGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK 236 (843)
Q Consensus 178 ---------------------~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~ 236 (843)
+|+++.||+ .++.+||+.++||++++|||+||+|||||++||++|++||||++++|+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~-~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~ 364 (878)
T 2v0c_A 286 AAKRKTEIERQAEGREKTGVFLGAYALNPA-TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIER 364 (878)
T ss_dssp HHHTSCHHHHHCSSSCCCCEEEEEEEECTT-TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEEC
T ss_pred HHhhhhhhhhhhccceeeeEecCcEEECCC-CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCC
Confidence 789999999 4899999999999999999999999999999999999999999999985
Q ss_pred C---------Ccccc-----cCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecc
Q 003160 237 D---------GTLNE-----VAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTME 302 (843)
Q Consensus 237 ~---------G~~~~-----~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~ 302 (843)
+ |.+++ ++|.|.|++++||+++|++.|+++|++.+ ++
T Consensus 365 ~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~----------------~v------------- 415 (878)
T 2v0c_A 365 PGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKG----------------RV------------- 415 (878)
T ss_dssp SSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEE----------------EE-------------
T ss_pred CCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCC----------------ce-------------
Confidence 3 23332 46889999999999999999999998522 11
Q ss_pred hHHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCceEEEcCCcccEEEecCh--------hHH---
Q 003160 303 PLAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNA--------DEA--- 371 (843)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~--------~~~--- 371 (843)
.+ +++||||||||+||+|||+|+|++ ++...+..+. ++.
T Consensus 416 ---------------~~--------------rlrDW~ISRQR~WG~PIPi~~~~~-~~~v~v~~~~lpv~lp~~~~~~~~ 465 (878)
T 2v0c_A 416 ---------------TY--------------RLRDWLISRQRYWGTPIPMVHCEA-CGVVPVPEEELPVLLPDLKDVEDI 465 (878)
T ss_dssp ---------------EE--------------SCCCEECEESCSSSEECCEEEETT-TEEEECCGGGCCCCCCCCCCHHHH
T ss_pred ---------------EE--------------ecccchhhcccccCCcccEEEECC-CCeEecCHHHccccccchhhhhcc
Confidence 11 478999999999999999999964 3333222100 111
Q ss_pred -------HHHHh----hhc-CCCceeEecCCCceEEEecCcccccccCCCCCC-----hhhhhhcCCCcEEEEeehh--h
Q 003160 372 -------LEKAH----QKY-GKNVEIYQDPDVLDTWFSSALWPFSTLGWPDVS-----ADDFKKFYPTTMLETGHDI--L 432 (843)
Q Consensus 372 -------~~~~~----~~~-~~~~~~~~~~dvlD~WFdS~l~~~~~~g~p~~~-----~~~~~~~~P~d~~~~G~Di--~ 432 (843)
+..+. ..| .++..++|++|||||||||+ ||++.++||.++ ++++++|||+|++++|.|+ +
T Consensus 466 ~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~il 544 (878)
T 2v0c_A 466 RPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSS-WYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVL 544 (878)
T ss_dssp SCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHT-SHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTT
T ss_pred ccCCCChhhhhHhhcCCcCCCCCCcceecccccccccccc-chhhhccCccccccccCHHHHccCCCCeEEEechHHHHH
Confidence 10000 011 11346999999999999997 999999999763 4688999999999999875 5
Q ss_pred hhHHHHHHHHHhH----hhCCCCceEEEEeeeEECC--------------------------------------------
Q 003160 433 FFWVARMVMMGIE----FTGSVPFSHVYLHGLIRDS-------------------------------------------- 464 (843)
Q Consensus 433 ~~W~~~~~~~~~~----~~~~~Pf~~v~~hg~v~d~-------------------------------------------- 464 (843)
++|++|+....+. +.++.||++|++||||+|.
T Consensus 545 hl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (878)
T 2v0c_A 545 HLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRP 624 (878)
T ss_dssp HHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCSEEEHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccccccccceeccccccccccccCchhhhhccccccceeec
Confidence 6677776544332 4568999999999999984
Q ss_pred --CC-------CcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 003160 465 --QG-------RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTANKAFTNKLWNAGKFILQNLP- 533 (843)
Q Consensus 465 --~G-------~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~- 533 (843)
+| +|||||+||+|+|.++|++||||++|||+++.++ ++|++||++.+.+.++|++++||++++....+.
T Consensus 625 ~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~ 704 (878)
T 2v0c_A 625 HEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLE 704 (878)
T ss_dssp CTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99 9999999999999999999999999999999555 999999999999999999999999987654321
Q ss_pred CCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhc
Q 003160 534 SQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLY 613 (843)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~ 613 (843)
.... .....++..|+|++++++.++++++++|++|+|+.|++.+++|+ +++ +.|.+.
T Consensus 705 ~~~~---------------~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~-~~l-~k~~~~------ 761 (878)
T 2v0c_A 705 TSGV---------------FQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFL-NAL-YEYRKD------ 761 (878)
T ss_dssp CCCC---------------CCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-HHHHHH------
T ss_pred cccc---------------cCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHH-hhhccc------
Confidence 0000 00123567899999999999999999999999999999999998 455 445431
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCCCC-cCCHHHHHHHHHHHHHHHHHH
Q 003160 614 RSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQTSL-PRHMSAIKRFENLQSLTRAIR 692 (843)
Q Consensus 614 ~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~~~-~~d~~~~~~~~~~~~vv~~ir 692 (843)
. .. ..+++.+|+.+++||+|||||+|||||+.|+ .+||+.++||+++. .. .+..++. +++..+
T Consensus 762 ~--~~------~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg--~~sv~~~~wP~~d~~~l---~~~~~~~---~vqvng 825 (878)
T 2v0c_A 762 R--PV------TPVYRTAIRYYLQMLFPFAPHLAEELWHWFW--PDSLFEAGWPELDEKAL---EKDVVEV---AVQVNG 825 (878)
T ss_dssp C--CS------CHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC--SSCGGGSCCCCCCGGGG---C---------------
T ss_pred c--hh------HHHHHHHHHHHHHHHcccchHHHHHHHHHcC--CCceeecCCCCCCHHHH---HHHHHHH---HHhhHH
Confidence 1 10 1578999999999999999999999999998 56999999999873 11 1222333 344445
Q ss_pred hhhhhcCCCccceeeEEEecCHHHHHHHHHHHHHHHHHcCCcccceeecCCCCCCCCCceEEEe
Q 003160 693 NARAEYSVEPAKRISASIVANEEVIQYISKEKEVLALLSRLDLLNVHFTESPPGDANQSVHLVA 756 (843)
Q Consensus 693 ~~r~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~i~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 756 (843)
++|++..++.+. +.+++.+...+...+.+.|.+.++.+++++ |+..+++|+
T Consensus 826 kvR~~i~v~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~k~i~v------~~~~vn~v~ 876 (878)
T 2v0c_A 826 AVAGTIHIPKDA-------PLEVARAEALKVRNVRAHLEGKEVVKEIYV------PGKILNLVV 876 (878)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHcccCcCC-------CHHHHHHHHhcCHHHHHHhCCCCcEEEEEE------CCCEEEEEe
Confidence 777777776541 223333344444556667777666677664 455666554
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-116 Score=1070.17 Aligned_cols=617 Identities=22% Similarity=0.350 Sum_probs=503.2
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCC--------CCcccCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGI--------KRVELSRDEF--TKRVWEWKEKYGGTITSQIKRL 70 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~--------~~~~~~~~~f--~~~~~~~~~~~~~~~~~q~~~l 70 (843)
++||+||+||+|+|++||||||+|++..+++.. .|. ....+.++++ ...|++|++++.+.|++||++|
T Consensus 63 i~R~~rm~G~~V~~~~G~D~~G~pie~~a~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 140 (810)
T 1wkb_A 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIK--NRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRA 140 (810)
T ss_dssp HHHHHHHHTCEEECCCCBBCCBSHHHHHHHHHH--TTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccCcCCccCCCCChHHHHHHHhc--ccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999998876421 000 0012334443 2479999999999999999999
Q ss_pred cccccCcCccccCc--hhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccC--CeEEEEEEEecCCC
Q 003160 71 GASCDWTRERFTLD--EQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEP--GTLYYIKYRVAGRS 146 (843)
Q Consensus 71 G~~~Dw~r~~~T~d--~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~--~~~~~~~~~~~~~~ 146 (843)
|+++||+|+|+|+| |.|.++|+|+|.+|+++|+||++.++|+|||.|+|+|||+||++++.. +..++|+|++.+++
T Consensus 141 gi~~Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~ 220 (810)
T 1wkb_A 141 GFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENG 220 (810)
T ss_dssp TCCCCGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSC
T ss_pred CeEEecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCC
Confidence 99999999999999 999999999999999999999999999999999999999999987654 45678999997753
Q ss_pred --eEEEEEeCCccccccCcEEEEcCCC-------------c------------hh-------------hhhcccEEEcCC
Q 003160 147 --DFLTIATTRPETLFGDVALAVNPQD-------------E------------HY-------------SQFIGMMAIVPM 186 (843)
Q Consensus 147 --~~l~v~TtrPeTl~g~~ai~v~P~~-------------~------------~y-------------~~l~g~~~~~P~ 186 (843)
.+++|||||||||+||+||||||+. + +| ++|+|++|.||+
T Consensus 221 ~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~ 300 (810)
T 1wkb_A 221 EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPV 300 (810)
T ss_dssp SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSS
T ss_pred CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCC
Confidence 7999999999999999999999994 2 12 369999999999
Q ss_pred CCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHH----------HHHhCCC--------ceeeccC------------
Q 003160 187 TYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP--------ILNVMNK------------ 236 (843)
Q Consensus 187 ~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~~l~--------~~~~i~~------------ 236 (843)
. ++.+||++++||++++|||+||+|||||++||++ |++|||| ++++|+.
T Consensus 301 ~-~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~ 379 (810)
T 1wkb_A 301 S-GDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEV 379 (810)
T ss_dssp S-CCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCS
T ss_pred C-CCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhh
Confidence 4 8999999999999999999999999999999986 4688887 7777632
Q ss_pred ---------------------------CCcccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCee
Q 003160 237 ---------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVI 289 (843)
Q Consensus 237 ---------------------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v 289 (843)
+|+++ +|+|+|+.++||++.|++.|+++|++.+.+++.| +|+|+|||+|+
T Consensus 380 ~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~v 456 (810)
T 1wkb_A 380 NKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRA 456 (810)
T ss_dssp GGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBC
T ss_pred hhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEE
Confidence 56665 7899999999999999999999999998777765 69999999999
Q ss_pred EEe-eccceeEecch--HHHHHHHHHHcCCeeEecchhHHHHHHHhhCCCceeeeeecccCCCCc---eEEEcCCccc--
Q 003160 290 EPL-VSKQWFVTMEP--LAEKALHAVEKGELTIMPERFEKIYNHWLSNIKDWCISRQLWWGHRIP---VWYIVGKEEE-- 361 (843)
Q Consensus 290 ~~~-~~~QWFl~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRq~~WG~pIP---~~~~~~~~~~-- 361 (843)
+++ +++||||++++ +++++++++++ +.|+|+..++++.+|+++++||||||||+||+||| .|.++..++.
T Consensus 457 i~~~~~~qwF~~~~~~~~~~~~l~~~~~--~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~~~~i 534 (810)
T 1wkb_A 457 VIKIIHDQWFIDYGNPEWKEKARKALER--MKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTI 534 (810)
T ss_dssp EEEEEEEEEEECTTCHHHHHHHHHHHHT--SEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEEEECTTTSSSS
T ss_pred EEEecCCceeEecChHHHHHHHHhhhcc--cEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcceecccCCCCce
Confidence 998 79999999996 99999999964 78999999999999999999999999999999999 4566432221
Q ss_pred EEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec----Cc-ccc-cccCCCCCC----hhhhhhcCCCcEEEEeehh
Q 003160 362 YIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS----AL-WPF-STLGWPDVS----ADDFKKFYPTTMLETGHDI 431 (843)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS----~l-~~~-~~~g~p~~~----~~~~~~~~P~d~~~~G~Di 431 (843)
|+...........+....|.+. -.-.++++|+||.+ |. +++ ...|||... +++|++|||+|+|++|+||
T Consensus 535 Yv~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p~Di~~~G~D~ 613 (810)
T 1wkb_A 535 YMAYYTISRHINKLRQEGKLDP-EKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPLDWRCSGKDL 613 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCG-GGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCSCSEEEEEGGG
T ss_pred eeehhhhHHHHHHhHhhcCCCH-HHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCCceEEeecccc
Confidence 1111111111111111111110 01135789999854 22 111 145777531 2578999999999999999
Q ss_pred hhhHHHHHHHHHhHhhCCCCc-eEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHH
Q 003160 432 LFFWVARMVMMGIEFTGSVPF-SHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIE 509 (843)
Q Consensus 432 ~~~W~~~~~~~~~~~~~~~Pf-~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~ 509 (843)
++||...+++++.++.+..|+ +.+++||||++ +|+|||||+||+|+|.+++++||+|++||||++.++ ++|++|+++
T Consensus 614 ~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~ 692 (810)
T 1wkb_A 614 IPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRK 692 (810)
T ss_dssp TTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHH
T ss_pred cccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCCCCcccCHH
Confidence 999998888888887775444 89999999995 999999999999999999999999999999986555 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHH
Q 003160 510 RLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVG 589 (843)
Q Consensus 510 ~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~ 589 (843)
.+.+.+++++++||+++++.+.. .+ ....++..|+|++++++.+++++.++|++|+|+.|+
T Consensus 693 ~~~~~~~~l~rl~n~~~~~~~~~---~~----------------~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~ 753 (810)
T 1wkb_A 693 EVGKLRKQIERFYELISQFAEYE---VK----------------GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAV 753 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC---CC----------------SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---Cc----------------ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999999876531 11 012346689999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhc
Q 003160 590 RETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLR 655 (843)
Q Consensus 590 ~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~ 655 (843)
..++.+++ ..+|+|++.+|++ +. ...+.+++++++.+++||+|||||+|||||++|+
T Consensus 754 ~~~~~~l~-~~~n~yi~~~k~~-----~~---~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 754 QWAFYSIM-NDLRWYLRRTEGR-----DD---EAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHTHHHH-HHHHHHHHHTTTC-----CC---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHHHHHHHHhcCc-----ch---hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 97754444 4589999998853 11 1226799999999999999999999999999984
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=7.4e-86 Score=787.93 Aligned_cols=464 Identities=21% Similarity=0.274 Sum_probs=387.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++||||||+|||.+++ ++|++|+ +|++++++.++++|++||+++|| .+
T Consensus 32 iaRy~rm~G~~V~~v~G~D~hG~pie~~A~----k~G~~p~------------e~~~~~~~~~~~~~~~lgis~D~--~~ 93 (722)
T 1rqg_A 32 FVRYLRLKGEDVVFICGTDEHGTPISFRAL----KEGRSPR------------EIVDEFHEQIKITFQRAKISFDF--FG 93 (722)
T ss_dssp HHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTCCHH------------HHHHHHHHHHHHHHHHHTCCCSE--EE
T ss_pred HHHHHHhcCCceEecceeCCCCHHHHHHHH----HcCCCHH------------HHHHHHHHHHHHHHHHhCCCCCC--Ce
Confidence 489999999999999999999999887765 4487765 68999999999999999999997 35
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+||.|.++|+++|.+|+++|+||++.++|+|||.|+|+|+|.+|+
T Consensus 94 rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~--------------------------------- 140 (722)
T 1rqg_A 94 RTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI--------------------------------- 140 (722)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---------------------------------
T ss_pred eCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---------------------------------
Confidence 69999999999999999999999999999999999999999986542
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
|| ||.|+.+ +..|.+
T Consensus 141 --------------------------------------------gt-----cP~c~~~----------------~~~Gd~ 155 (722)
T 1rqg_A 141 --------------------------------------------GT-----CPYCGAE----------------DQKGDQ 155 (722)
T ss_dssp --------------------------------------------SB-----CSSSCCS----------------CCCTTT
T ss_pred --------------------------------------------cc-----cCccCCc----------------cCCcch
Confidence 32 6666654 367888
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
|++||.. ..+.++.+|+|||||++++++.++||||++++++++++++++++. +
T Consensus 156 c~~~G~~------------------------l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~---w 208 (722)
T 1rqg_A 156 CEVCGRP------------------------LTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQP---W 208 (722)
T ss_dssp CSSSCCC------------------------CCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSC---C
T ss_pred hhhcccc------------------------cChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCC---C
Confidence 8888753 234557789999999999999999999999999999999998754 5
Q ss_pred cchhHHHHHHHh-hCCCceeeeeecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEecC
Q 003160 321 PERFEKIYNHWL-SNIKDWCISRQLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSSA 399 (843)
Q Consensus 321 P~~~~~~~~~~l-~~l~DW~ISRq~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS~ 399 (843)
|+..++++.+|| ++++|||||||++||+|||+|++ + -+.+++|||||+.
T Consensus 209 p~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~~~-g-----------------------------~~~~~iyvW~da~ 258 (722)
T 1rqg_A 209 KPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEE-D-----------------------------MKGKVLYVWFEAP 258 (722)
T ss_dssp CHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCS-S-----------------------------STTCEECHHHHGG
T ss_pred CHHHHHHHHHHHHCCCcccceeccccCccccCcccc-C-----------------------------CCCCEEEEEeccc
Confidence 999999999999 89999999999999999997542 1 0247999999999
Q ss_pred cccccccC-CCCCC--hhhhhhcCCC-c-----EEEEeehhhhh----HHHHHHHHHh-----HhhC-CCCceEEEEeee
Q 003160 400 LWPFSTLG-WPDVS--ADDFKKFYPT-T-----MLETGHDILFF----WVARMVMMGI-----EFTG-SVPFSHVYLHGL 460 (843)
Q Consensus 400 l~~~~~~g-~p~~~--~~~~~~~~P~-d-----~~~~G~Di~~~----W~~~~~~~~~-----~~~~-~~Pf~~v~~hg~ 460 (843)
+.|++.++ |+... .++|+.|||. | +|++|+||++| |++.+++.+. .+.| .+| ++|++|||
T Consensus 259 i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~ 337 (722)
T 1rqg_A 259 IGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLP-YDIPANEY 337 (722)
T ss_dssp GHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCC-SBCCEECC
T ss_pred cchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccccccCCCCC-CEEEEeee
Confidence 88877654 43311 1468888872 2 89999999987 7875543321 0112 578 99999999
Q ss_pred EECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHH----HhcCC
Q 003160 461 IRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFI----LQNLP 533 (843)
Q Consensus 461 v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~----~~~~~ 533 (843)
|++ +|+|||||+||+|+|.+++++||+|++||||++..+ ++|++|+++.+.. +++++++++|+++++ ..++.
T Consensus 338 v~~-~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~ 416 (722)
T 1rqg_A 338 LTL-EGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFD 416 (722)
T ss_dssp EEE-TTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHST
T ss_pred EEe-CCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 996 999999999999999999999999999999999866 9999999999987 556899999976544 33332
Q ss_pred CCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhc
Q 003160 534 SQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLY 613 (843)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~ 613 (843)
+..+ ....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ +++|+|++.++||.+
T Consensus 417 ~~~~----------------~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~--~~~n~Yi~~~kpw~~ 478 (722)
T 1rqg_A 417 GVVP----------------ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLA--SFGNRYFDHKQPWKT 478 (722)
T ss_dssp TBCC----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHTTCHHHH
T ss_pred CCCC----------------CcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHhcCchhh
Confidence 2111 0123466899999999999999999999999999999999998 799999999999988
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 614 RSEYDSDAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 614 ~~~~~~~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
.+++......+..+++++++.+++||+|||||+||+||++|+..
T Consensus 479 ~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 479 AKEDKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 76444445566778889999999999999999999999999854
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.7e-84 Score=761.07 Aligned_cols=441 Identities=20% Similarity=0.237 Sum_probs=373.6
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|+|||||||+|||.++ .++|++|+ +|++++++.+++||++||+++||. +
T Consensus 38 i~Ry~r~~G~~v~~v~G~D~hG~~ie~~a----~k~g~~~~------------e~~~~~~~~~~~~~~~lgi~~D~~--~ 99 (542)
T 3u1f_A 38 IGRYHRVKGERVFALTGTDEHGQKVAEAA----KQKQVSPY------------DFTTAVAGEFKKCFEQMDYSIDYF--I 99 (542)
T ss_dssp HHHHHHHTTCCEEEEEEEECCSHHHHHHH----HHTTSCHH------------HHHHHHHHHHHHHHHHHTCCCSEE--E
T ss_pred HHHHHHhcCCCccccCccCcChHHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCccCcC--c
Confidence 47999999999999999999999976654 46788875 588999999999999999999985 4
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.||||.|.++|+++|.+|+++|+||++.++|+|||+|+|+|+|.||+..
T Consensus 100 ~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~------------------------------- 148 (542)
T 3u1f_A 100 RTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDG------------------------------- 148 (542)
T ss_dssp ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEE-------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcc-------------------------------
Confidence 5999999999999999999999999999999999999999999887410
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
| +.+|.
T Consensus 149 ---------------------------------------------------~----------------------~~~g~- 154 (542)
T 3u1f_A 149 ---------------------------------------------------V----------------------DKDGN- 154 (542)
T ss_dssp ---------------------------------------------------E----------------------CTTSC-
T ss_pred ---------------------------------------------------c----------------------cccCc-
Confidence 1 11222
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
.+++|+|||++++++.++|||++++++++++++++++++..+.
T Consensus 155 -------------------------------------~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~ 197 (542)
T 3u1f_A 155 -------------------------------------PCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIV 197 (542)
T ss_dssp -------------------------------------EEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEE
T ss_pred -------------------------------------cccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccC
Confidence 2478999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhC-CCceeeeeecc----cCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEE
Q 003160 321 PERFEKIYNHWLSN-IKDWCISRQLW----WGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTW 395 (843)
Q Consensus 321 P~~~~~~~~~~l~~-l~DW~ISRq~~----WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~W 395 (843)
|+..++.+.+|+++ ++|||||||++ ||+|||.+ +..++++|
T Consensus 198 P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~----------------------------------~~~~~~vw 243 (542)
T 3u1f_A 198 PEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGN----------------------------------PDHXVYVW 243 (542)
T ss_dssp SHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTE----------------------------------EEEEECHH
T ss_pred CchhhHhHhhhhhccccccCccccccCcCCCCCccCCC----------------------------------cCeeeeee
Confidence 99999999999974 99999999998 99999931 12578899
Q ss_pred EecCcccccccCCCCCC---------hhhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEE
Q 003160 396 FSSALWPFSTLGWPDVS---------ADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIR 462 (843)
Q Consensus 396 FdS~l~~~~~~g~p~~~---------~~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~ 462 (843)
||+...+++..+++.+. .......||+|+|++|+||++| |++++++. |..|++.|++||++.
T Consensus 244 ~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hg~l~ 318 (542)
T 3u1f_A 244 LDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSA-----GLPLPKKIVAHGWWT 318 (542)
T ss_dssp HHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCCE
T ss_pred eccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhh-----cccccceecccccee
Confidence 99877666654432211 0122345899999999999998 77766654 345779999999986
Q ss_pred CCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchh
Q 003160 463 DSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDIS 539 (843)
Q Consensus 463 d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~ 539 (843)
.+|+|||||+||||+|.+++++||+|+|||||++.++ ++|++|+++.+.+ ++.|+|+|||+++++..........
T Consensus 319 -~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~- 396 (542)
T 3u1f_A 319 -KDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGE- 396 (542)
T ss_dssp -ETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB-
T ss_pred -cCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCC-
Confidence 7999999999999999999999999999999998776 9999999999987 5669999999998887654332210
Q ss_pred HHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH
Q 003160 540 RWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS 619 (843)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~ 619 (843)
......++..|+|++++++.++++++++|++|+|++|++.|++|+ ++||+|++..|||...+++.+
T Consensus 397 ------------~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~--~~~n~Y~~~~~pw~l~k~d~~ 462 (542)
T 3u1f_A 397 ------------WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVL--RAINAYVTDMAPWKLVKTDPE 462 (542)
T ss_dssp ------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHH
T ss_pred ------------CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCchhhhcCCHH
Confidence 011245678899999999999999999999999999999999998 689999999999855444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhcc
Q 003160 620 DAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRK 656 (843)
Q Consensus 620 ~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~ 656 (843)
++++++.++++++..+++||||||||+||+||++|+-
T Consensus 463 ~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~ 499 (542)
T 3u1f_A 463 RLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGV 499 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCC
Confidence 6667788888899999999999999999999999974
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=8.7e-80 Score=721.53 Aligned_cols=461 Identities=21% Similarity=0.351 Sum_probs=388.9
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|+|++|||+||+||+..++ +.|++++ ++++++.+.++++|++||+++| +.+
T Consensus 47 laR~~r~~G~~V~~~~g~D~~G~~i~~~a~----~~g~~~~------------~~~~~~~~~~~~~~~~lgi~~d--~~~ 108 (560)
T 3h99_A 47 WVRYQRMRGHEVNFICADDAHGTPIMLKAQ----QLGITPE------------QMIGEMSQEHQTDFAGFNISYD--NYH 108 (560)
T ss_dssp HHHHHHHTTCEEEEEEEEBCCSHHHHHHHH----HHTSCHH------------HHHHHHHHHHHHHHHHTTCCCS--EEE
T ss_pred HHHHHHHcCCeEEEeeeecCcCcHHHHHHH----HhCCCHH------------HHHHHHHHHHHHHHHHcCCCCC--Cce
Confidence 489999999999999999999999877654 4577764 4678889999999999999876 456
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|.+.|+++|.+|+++|+||++.+.++|||.|+|+|+|.+|+
T Consensus 109 ~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~--------------------------------- 155 (560)
T 3h99_A 109 STHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK--------------------------------- 155 (560)
T ss_dssp ESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE---------------------------------
T ss_pred eCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC---------------------------------
Confidence 69999999999999999999999999999999999999999987663
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
| .||.|+.. ++.|..
T Consensus 156 --------------------------------------------g-----~cp~c~~~----------------~~~gd~ 170 (560)
T 3h99_A 156 --------------------------------------------G-----TCPKCKSP----------------DQYGDN 170 (560)
T ss_dssp --------------------------------------------E-----ECTTTCCS----------------SEETTB
T ss_pred --------------------------------------------C-----CCCCCCCc----------------ccccch
Confidence 2 26666543 478999
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
|++||.+ ..+.+...|+|+|||++++++.++||||+++++++.++++++++ .+
T Consensus 171 ce~cg~~------------------------~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~---~~ 223 (560)
T 3h99_A 171 CEVCGAT------------------------YSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSG---AL 223 (560)
T ss_dssp CTTTCCB------------------------CCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTS---CS
T ss_pred hhhcccc------------------------CChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhC---CC
Confidence 9999974 23344567999999999999999999999999999999999874 36
Q ss_pred cchhHHHHHHHhh-CCCceeeeeec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 321 PERFEKIYNHWLS-NIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
|+..++.+.+||+ +++|||||||+ |||+|||. + +.+|+|||||+
T Consensus 224 ~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~-------~---------------------------~~~viyvW~da 269 (560)
T 3h99_A 224 QEQVANKMQEWFESGLQQWDISRDAPYFGFEIPN-------A---------------------------PGKYFYVWLDA 269 (560)
T ss_dssp CHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTT-------C---------------------------TTEEECHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCC-------C---------------------------CCceEEeCccc
Confidence 7788999999998 89999999998 99999992 0 24799999999
Q ss_pred Cccccccc-CCCCCC--hhhhhhcCCCc-----EEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCC
Q 003160 399 ALWPFSTL-GWPDVS--ADDFKKFYPTT-----MLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG 466 (843)
Q Consensus 399 ~l~~~~~~-g~p~~~--~~~~~~~~P~d-----~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G 466 (843)
.++|++.+ +|+.+. ..+|++|||.| ++++|+||++ ||+++|+++++ .+| ++|++||||++ +|
T Consensus 270 ~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~----~~p-~~v~~hg~v~~-~G 343 (560)
T 3h99_A 270 PIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNF----RKP-SNLFVHGYVTV-NG 343 (560)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTB----CCC-SEEEEECCEEE-TT
T ss_pred chhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCC----CCC-cEEEEEeEEEe-CC
Confidence 99998876 565432 15799999999 9999999999 78888777554 567 99999999995 99
Q ss_pred CcccccCCCccChhhHHHhhChhHHHHHHHhCCc-c-cccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCC-CCchhHH
Q 003160 467 RKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-G-QDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPS-QNDISRW 541 (843)
Q Consensus 467 ~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~-~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~-~~~~~~~ 541 (843)
+|||||+||+|+|.+++++||+|++||||++..+ + +|++|+++.+.. +++|++++||++.++...+.. +..
T Consensus 344 ~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~---- 419 (560)
T 3h99_A 344 AKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDG---- 419 (560)
T ss_dssp EECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTT----
T ss_pred eeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 9999999999999999999999999999998766 6 899999999975 788999999987554332100 000
Q ss_pred HHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCC--ChH
Q 003160 542 EILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSE--YDS 619 (843)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~--~~~ 619 (843)
. ......|+|++++++.+++.++++|++|+|+.|++.+++|+ ++||+|++.+|||...++ +..
T Consensus 420 ----------~---~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~--~~~n~Yi~~~kpw~l~k~~~~~~ 484 (560)
T 3h99_A 420 ----------V---LASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALA--DLANRYVDEQAPWVVAKQEGRDA 484 (560)
T ss_dssp ----------B---CCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTSTTCHH
T ss_pred ----------C---CCCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcCCcCcHH
Confidence 0 01134799999999999999999999999999999999998 789999999999965442 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccCCCceEecCCCCC
Q 003160 620 DAIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKRKEALIVSPWPQT 669 (843)
Q Consensus 620 ~~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~~~si~~~~~P~~ 669 (843)
.+..+..+++.+++.+++||+|||||+||+||++|+.. ..||..
T Consensus 485 ~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~~------~~w~~~ 528 (560)
T 3h99_A 485 DLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNTE------LTWDGI 528 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTSC------CCTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCCC------CChhhh
Confidence 45566778899999999999999999999999999742 567754
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-78 Score=707.34 Aligned_cols=442 Identities=20% Similarity=0.259 Sum_probs=378.7
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|++++|+|+||.||+.. +.+.|++++ +|++++.+.+++++++||+++|+ .+
T Consensus 55 laR~~r~~G~~V~~~~g~dd~G~ki~~~----a~~~g~~p~------------~~~~~~~~~~~~~~~~lgi~~D~--~~ 116 (564)
T 3kfl_A 55 LGRYHRVKGEEVFVMTGTDEHGQKVAEA----AAKQGVSPM------------DFTTSVSSEFKQCFQEMNYDMNY--FI 116 (564)
T ss_dssp HHHHHHHHTCCEEEEEEEECCSHHHHHH----HHHTTCCHH------------HHHHHHHHHHHHHHHHTTCCCSE--EE
T ss_pred HHHHHHHcCCcEEEecCcCCCCcHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHcCCCCCc--cc
Confidence 4899999999999999999999997554 456788875 57899999999999999999993 24
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+|+.|.+.|+++|.+|+++|+||++.+.++|||.|++++++.|+...
T Consensus 117 ~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~------------------------------- 165 (564)
T 3kfl_A 117 RTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADG------------------------------- 165 (564)
T ss_dssp ETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEE-------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccC-------------------------------
Confidence 4999999999999999999999999999999999999999999887410
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
|| .+|..
T Consensus 166 ---------------------------------------------------~~----------------------~~g~~ 172 (564)
T 3kfl_A 166 ---------------------------------------------------VD----------------------RDGKP 172 (564)
T ss_dssp ---------------------------------------------------EC----------------------TTSCE
T ss_pred ---------------------------------------------------cC----------------------CCCCE
Confidence 00 12222
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
| + .|-+||++++++.++||||++++++++++++++++...+.
T Consensus 173 c---~-----------------------------------~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~ 214 (564)
T 3kfl_A 173 C---K-----------------------------------VSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIV 214 (564)
T ss_dssp E---E-----------------------------------EETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEE
T ss_pred e---c-----------------------------------cccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccC
Confidence 1 1 0125899999999999999999999999999998877899
Q ss_pred cchhHHHHHHHhh-CCCceeeee----ecccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEE
Q 003160 321 PERFEKIYNHWLS-NIKDWCISR----QLWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTW 395 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISR----q~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~W 395 (843)
|+..++.+.+||+ +++|||||| |++||||||. .+.+|+|||
T Consensus 215 P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~----------------------------------~~~~v~yVW 260 (564)
T 3kfl_A 215 PEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPG----------------------------------DERHCIYVW 260 (564)
T ss_dssp SHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETT----------------------------------EEEEEECHH
T ss_pred CHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCC----------------------------------CCCCEEEEe
Confidence 9999999999997 899999999 8999999992 134799999
Q ss_pred EecCcccccccCC-CCCChh-----hh--hhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEEC
Q 003160 396 FSSALWPFSTLGW-PDVSAD-----DF--KKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRD 463 (843)
Q Consensus 396 FdS~l~~~~~~g~-p~~~~~-----~~--~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d 463 (843)
|||+++|++++|| |.++.+ +| +++||+|++++|+||++| |+++|++++ ..||++|++|||| +
T Consensus 261 fDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g-----~~~~~~v~~hg~v-~ 334 (564)
T 3kfl_A 261 LDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE-----LPLPERLVSHGWW-T 334 (564)
T ss_dssp HHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTT-----CCCCSCEEEECCE-E
T ss_pred ccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCC-----CCCCcEEEEcccE-e
Confidence 9999999999998 876522 28 899999999999999997 888877653 4577999999999 6
Q ss_pred CCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhH
Q 003160 464 SQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISR 540 (843)
Q Consensus 464 ~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~ 540 (843)
.+|+|||||+||+|+|.+++++||+|++||||++..+ ++|++|+++.+.+ ++++++++||+++++...+..+....
T Consensus 335 ~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~- 413 (564)
T 3kfl_A 335 KDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMW- 413 (564)
T ss_dssp ETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBC-
T ss_pred eCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC-
Confidence 9999999999999999999999999999999999555 9999999999987 56799999999988876543222100
Q ss_pred HHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHH
Q 003160 541 WEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSD 620 (843)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~ 620 (843)
+ ....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ +++|+|++..+||...+++...
T Consensus 414 -----------p-~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~--~~~n~Y~~~~kpW~l~~~~~~~ 479 (564)
T 3kfl_A 414 -----------P-EPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVL--RSLNAYVTENAPWKLVKMDTAR 479 (564)
T ss_dssp -----------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTTCHHH
T ss_pred -----------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCCHHH
Confidence 0 1124567899999999999999999999999999999999998 5899999999997544435555
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 621 AIIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 621 ~~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
..+++.++..+++.+++||+|||||+||+||++|+..
T Consensus 480 ~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 480 LGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 6678889999999999999999999999999999853
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=4.2e-78 Score=703.66 Aligned_cols=433 Identities=24% Similarity=0.351 Sum_probs=363.8
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|.+++|+|+||.||+..+ .+.|.++. ++++++.+.++++|++||+++| +.+
T Consensus 54 laR~lr~~G~~V~~~~g~dd~g~ki~~~a----~~~g~~~~------------~~~~~~~~~~~~~l~~lgi~~d--~~~ 115 (536)
T 4dlp_A 54 MARFQRLNGMDVYFLTGTDEHGIKMLQSA----RKEGITPR------------DLADRNTSAFRRMAEVLNSSND--DYI 115 (536)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHH----HHHTSCHH------------HHHHHHHHHHHHHHHHTTCCCS--EEE
T ss_pred HHHHHHhcCCcEEEecCcCCcchHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHcCCCCC--cce
Confidence 48999999999999999999999976544 45688775 5778999999999999999998 223
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+++.|.+.++++|.+|+++|+||++..+++|||.|++++++.|++..
T Consensus 116 ~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 164 (536)
T 4dlp_A 116 RTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVR------------------------------- 164 (536)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEEC-------------------------------
T ss_pred eCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcC-------------------------------
Confidence 4999999999999999999999999999999999999999988876310
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
++|.
T Consensus 165 ---------------------------------------------------------------------------~~g~- 168 (536)
T 4dlp_A 165 ---------------------------------------------------------------------------ADGV- 168 (536)
T ss_dssp ---------------------------------------------------------------------------TTSC-
T ss_pred ---------------------------------------------------------------------------CCCC-
Confidence 1121
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
+|++||++++++.++||||+++++++++++++++++..+.
T Consensus 169 ----------------------------------------~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~ 208 (536)
T 4dlp_A 169 ----------------------------------------RYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIM 208 (536)
T ss_dssp ----------------------------------------EECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEE
T ss_pred ----------------------------------------cccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccC
Confidence 4789999999999999999999999999999998877889
Q ss_pred cchhHHHHHHHhh-CCCceeeeee-cccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEEec
Q 003160 321 PERFEKIYNHWLS-NIKDWCISRQ-LWWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWFSS 398 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISRq-~~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WFdS 398 (843)
|+..++.+.+|++ +++||||||| .+||||||. + +.+|+||||||
T Consensus 209 P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~-------~---------------------------~~~v~yvWfda 254 (536)
T 4dlp_A 209 PAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPG-------D---------------------------EKHVMYVWVDA 254 (536)
T ss_dssp SHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTT-------C---------------------------TTSEECHHHHH
T ss_pred cHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCC-------C---------------------------CCCceEEeeCC
Confidence 9999999999997 8999999998 689999992 0 35899999999
Q ss_pred CcccccccCCCCCChhhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCC
Q 003160 399 ALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLG 474 (843)
Q Consensus 399 ~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~G 474 (843)
+++|++++|||... .+|+++||+|++++|+||++| |+++|+++ |..||++|++||||+ .+|+|||||+|
T Consensus 255 ~~~y~s~~~~~~~~-~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~-----g~~~~~~v~~hg~v~-~~G~KMSKS~G 327 (536)
T 4dlp_A 255 LTNYITALGYPDTT-DERWAYWPANAHIIGKDISRFHAVYWPAFLMSA-----QLPLPKRVFAHGFLF-NRGEKMSKSVG 327 (536)
T ss_dssp HHHHHHTTTTTCTT-SGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHT-----TCCCCSCEEEECCEE-C----------
T ss_pred cHHHHHhcCCCCCc-hHHHhhCCcceEEeechHHHHHHHHHHHHHHHC-----CCCCCcEEEeeeeEe-eCCceecccCC
Confidence 99999999999876 789999999999999999997 88887664 345779999999998 59999999999
Q ss_pred CccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHh----cCCCCCchhHHHHHHhh
Q 003160 475 NVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQ----NLPSQNDISRWEILLAY 547 (843)
Q Consensus 475 NvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~----~~~~~~~~~~~~~~~~~ 547 (843)
|+|+|.+++++||+|++||||++..+ ++|++||++.+.+ ++++++++||+++++.. +..+..+
T Consensus 328 Nvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p---------- 397 (536)
T 4dlp_A 328 NVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVP---------- 397 (536)
T ss_dssp --CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCC----------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----------
Confidence 99999999999999999999999555 9999999999986 56799999998766543 3322211
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHH
Q 003160 548 KFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAV 627 (843)
Q Consensus 548 ~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~ 627 (843)
....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ ++||+|++..|||...+++...+.+++.+
T Consensus 398 ------~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~ 469 (536)
T 4dlp_A 398 ------QPGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVV--AEANRYFAGQEPWALRKTDPARMGTVLYV 469 (536)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHH
T ss_pred ------CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhCCchhhcCCCHHHHHHHHHH
Confidence 0124567899999999999999999999999999999999998 79999999999975443344455677888
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 628 LLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 628 l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
+..++..+++||+|||||+||+||++|+..
T Consensus 470 l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 470 TAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 999999999999999999999999999853
No 13
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.4e-77 Score=698.88 Aligned_cols=433 Identities=23% Similarity=0.354 Sum_probs=367.7
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CcCc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCD-WTRE 79 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~D-w~r~ 79 (843)
++||+||+||+|+|++||||||+||+..+ .++|+++. +|++++.+.+++++++||+++| |.|
T Consensus 41 l~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~------------~~~~~~~~~~~~~~~~lgi~~d~~~~- 103 (524)
T 2x1l_A 41 IARFKRLDGYDVRYLTGTDVHGQKMAETA----AKEGIPAA------------ELARRNSDVFQRLQEKLNISFDRFIR- 103 (524)
T ss_dssp HHHHHHHTTCEEEEEEEECCCSHHHHHHH----HHHTSCHH------------HHHHHHHHHHHHHHHHTTCCCSEEEE-
T ss_pred HHHHHHhcCCceeeeCCcCcccHHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHcCCcCCCCee-
Confidence 48999999999999999999999976554 45587764 5788899999999999999988 554
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCcccc
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETL 159 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl 159 (843)
|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.||++
T Consensus 104 --t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~------------------------------- 150 (524)
T 2x1l_A 104 --TSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE------------------------------- 150 (524)
T ss_dssp --TTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE-------------------------------
T ss_pred --cCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc-------------------------------
Confidence 99999999999999999999999999999999999999999887741
Q ss_pred ccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCc
Q 003160 160 FGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGT 239 (843)
Q Consensus 160 ~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~ 239 (843)
|+ +|
T Consensus 151 ---------------------------------------------g~------------------------------~G- 154 (524)
T 2x1l_A 151 ---------------------------------------------QP------------------------------DG- 154 (524)
T ss_dssp ---------------------------------------------CT------------------------------TS-
T ss_pred ---------------------------------------------CC------------------------------CC-
Confidence 10 01
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccC-CCCCeeEEeeccceeEecchHHHHHHHHHHcCCee
Q 003160 240 LNEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQ-RGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 318 (843)
Q Consensus 240 ~~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~-r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~ 318 (843)
+.|+ |||++++++.++|||+++++++++++++++++...
T Consensus 155 ----------------------------------------~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~ 194 (524)
T 2x1l_A 155 ----------------------------------------TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF 194 (524)
T ss_dssp ----------------------------------------CEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGG
T ss_pred ----------------------------------------CccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCe
Confidence 1477 99999999999999999999999999999876666
Q ss_pred EecchhHHHHHHHh-hCCCceeeeeec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEE
Q 003160 319 IMPERFEKIYNHWL-SNIKDWCISRQL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 319 ~~P~~~~~~~~~~l-~~l~DW~ISRq~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WF 396 (843)
+.|+..++.+.+|+ ++++|||||||| +||+||| |. +.+|+||||
T Consensus 195 i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP-~~---------------------------------~~~~~yvWf 240 (524)
T 2x1l_A 195 IGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVP-DH---------------------------------PDHVMYVWV 240 (524)
T ss_dssp EESHHHHHHHHHHHTTCCCCEECEESSCCSSCEET-TE---------------------------------EEEEECHHH
T ss_pred eCCHHHHHHHHHHHHcCCcccceECCCCCcCccCC-CC---------------------------------CCCEEEEec
Confidence 89999999999999 589999999997 6999999 21 136899999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhhh----HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCccccc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILFF----WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 472 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~~----W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS 472 (843)
||+.+|++.+|||.+....|+++||.|++++|+||++| |++.++++ |..||+++++||||++ +|+|||||
T Consensus 241 ds~~~~~~~~g~p~~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~-----g~~~~~~v~~hG~v~~-~G~KMSKS 314 (524)
T 2x1l_A 241 DALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSA-----GLPLPKRIFAHGWLLN-RGEKMSKS 314 (524)
T ss_dssp HHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEEE-CSCSEETT
T ss_pred CCchHHHHHcCCCCCchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHC-----CCCCCcEEEECcEEEe-CCcccCCc
Confidence 99999999999998664689999999999999999997 55555443 4567899999999995 99999999
Q ss_pred CCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHHH--HHHHHHHHHHHHHHHhc----CCCCCchhHHHHHH
Q 003160 473 LGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTAN--KAFTNKLWNAGKFILQN----LPSQNDISRWEILL 545 (843)
Q Consensus 473 ~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~~--~~~~nkl~N~~rf~~~~----~~~~~~~~~~~~~~ 545 (843)
+||+|+|.+++++||+|++|||+++.++ ++|++||++.+.+. ++++|++||+++++... ..+..+
T Consensus 315 ~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~-------- 386 (524)
T 2x1l_A 315 IGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVP-------- 386 (524)
T ss_dssp TEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCC--------
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------
Confidence 9999999999999999999999998545 99999999999874 45888999987765432 111000
Q ss_pred hhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCC----hHHH
Q 003160 546 AYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEY----DSDA 621 (843)
Q Consensus 546 ~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~----~~~~ 621 (843)
....++..|+|++++++.+++.+.++|++|+|+.|++.+++|+ ..+|+|++.+|||...++. ....
T Consensus 387 --------~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~l~~~~~~~~~~~~ 456 (524)
T 2x1l_A 387 --------DPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVL--GAANRYFSAQEPWVLRKSDAAEDQQRF 456 (524)
T ss_dssp --------CCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHTTCCSHHHHHHH
T ss_pred --------CccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHhcCChhhhcCccccCHHHH
Confidence 0123467899999999999999999999999999999999998 5899999999997543321 1233
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 622 IIAQAVLLYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 622 ~~~~~~l~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
..++.+++.++..+++||+|||||+|||||+.|+..
T Consensus 457 ~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 457 RTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 456678888999999999999999999999999854
No 14
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=1.1e-76 Score=688.25 Aligned_cols=428 Identities=24% Similarity=0.314 Sum_probs=362.4
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|++++|||+||+|++..+ .++|+++. +|++++.+.++++|++||+++|+ .+
T Consensus 32 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~a----~~~g~~~~------------~~~~~~~~~~~~~~~~lgi~~d~--~~ 93 (500)
T 2d5b_A 32 LARWHRLDGYRTFFLTGTDEHGETVYRAA----QAAGEDPK------------AFVDRVSGRFKRAWDLLGIAYDD--FI 93 (500)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHHHH----HHHTSCHH------------HHHHHHHHHHHHHHHHTTCCCSE--EE
T ss_pred HHHHHHcCCCceeeecccCCchHHHHHHH----HHcCCCHH------------HHHHHHHHHHHHHHHHhCCcCCC--Cc
Confidence 48999999999999999999999976544 45587764 57889999999999999998884 45
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.++.
T Consensus 94 ~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--------------------------------- 140 (500)
T 2d5b_A 94 RTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--------------------------------- 140 (500)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB---------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc---------------------------------
Confidence 69999999999999999999999999999999999999998654321
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
T Consensus 141 -------------------------------------------------------------------------------- 140 (500)
T 2d5b_A 141 -------------------------------------------------------------------------------- 140 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
.++|+|||.+++.+.++||||++++++++++++++++...+.
T Consensus 141 --------------------------------------~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~ 182 (500)
T 2d5b_A 141 --------------------------------------EGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIR 182 (500)
T ss_dssp --------------------------------------TTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEE
T ss_pred --------------------------------------CCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeC
Confidence 024999999999999999999999999999999998766678
Q ss_pred cchhHHHHHHHhh-CCCceeeee--ec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEE
Q 003160 321 PERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISR--q~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WF 396 (843)
|+..++.+.+|++ +++|||||| |+ +||+|||. + +.+|+||||
T Consensus 183 p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~--~--------------------------------~~~v~~vWf 228 (500)
T 2d5b_A 183 PEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPW--D--------------------------------ENHVTFVWF 228 (500)
T ss_dssp SHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETT--E--------------------------------EEEEECHHH
T ss_pred CHHHHHHHHHHHhcCCCCeecccccccccCccccCC--C--------------------------------CCCeeEEcc
Confidence 9999999999995 789999999 65 79999993 1 236999999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCccccc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 472 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS 472 (843)
||+++|++.+|||.+. +|+++||.|++++|+||++ ||++++.++ |..||+++++||||++.+|+|||||
T Consensus 229 ds~~~y~~~~g~~~~~--~~~~~~p~di~~~G~D~~~fh~~~~~a~~~~~-----g~~~~~~v~~~G~v~~~~G~KMSKS 301 (500)
T 2d5b_A 229 DALLNYVSALDYPEGE--AYRTFWPHAWHLIGKDILKPHAVFWPTMLKAA-----GIPMYRHLNVGGFLLGPDGRKMSKT 301 (500)
T ss_dssp HHHTHHHHTTTTTTCH--HHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSEEEEECCEECTTSSCCCTT
T ss_pred ccchhhHHHcCCCCCc--hHHHcCCCeEEEEeechhhhHHHHHHHHHHHc-----CCCCCcEEEECceEEeCCCCccccc
Confidence 9999999999999763 3889999999999999999 566665543 4568899999999998899999999
Q ss_pred CCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 003160 473 LGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 549 (843)
Q Consensus 473 ~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~ 549 (843)
+||+|+|.+++++||+|++|||+++.++ ++|++||++.+.+ ++++++++||+..++.........
T Consensus 302 ~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~------------ 369 (500)
T 2d5b_A 302 LGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAE------------ 369 (500)
T ss_dssp TTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHST------------
T ss_pred CCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 9999999999999999999999998544 9999999999987 456889999986554332100000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChHHHHHHHHHHH
Q 003160 550 DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDSDAIIAQAVLL 629 (843)
Q Consensus 550 ~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~~~~~~~~~l~ 629 (843)
.. .. ...++|++++++.+++.+.++|++|+|+.|++.+++|+ +.+|+|++.+|||...+++.+....+..+++
T Consensus 370 -~~--~~--~~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~ 442 (500)
T 2d5b_A 370 -GR--IP--EPVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYV--KALNRYINEKKPWELFKKEPEEARAVLYRVV 442 (500)
T ss_dssp -TB--CC--CCCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHCHHHHHHHHHHHH
T ss_pred -CC--CC--chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhccCcHHHHHHHHHHHH
Confidence 00 00 01247899999999999999999999999999999998 6899999999999654323233446777888
Q ss_pred HHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 630 YIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 630 ~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
.+++.+++||+|||||+|||||+.|+..
T Consensus 443 ~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 443 EGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 8999999999999999999999999854
No 15
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=5e-74 Score=664.73 Aligned_cols=424 Identities=22% Similarity=0.296 Sum_probs=330.5
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCcc
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEKMLAAEGIKRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRER 80 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~~ 80 (843)
++||+||+||+|++++||||||+||+.+ +.++|+++. ++++++.+.++++|++||+++| ..+
T Consensus 34 ~~R~~r~~G~~V~~~~g~D~~G~~i~~~----a~~~g~~~~------------~~~~~~~~~~~~~~~~lgi~~d--~~~ 95 (497)
T 2csx_A 34 IARYYRLRDYDVFFLTGTDEHGLKIQKK----AEELGISPK------------ELVDRNAERFKKLWEFLKIEYT--KFI 95 (497)
T ss_dssp HHHHHHHTTCEEEEEEEEECCSHHHHTH----HHHSSSCHH------------HHHHHHHHHHHHHHHHTTCCCS--EEE
T ss_pred HHHHHHhcCCceeeecccCCCcHHHHHH----HHHcCCCHH------------HHHHHHHHHHHHHHHHhCCcCC--CCc
Confidence 4899999999999999999999997554 445687764 4778999999999999999777 356
Q ss_pred ccCchhHHHHHHHHHHHHHHcCceeeCCcccccCCCCCcccCcccccccccCCeEEEEEEEecCCCeEEEEEeCCccccc
Q 003160 81 FTLDEQLSRAVVEAFIRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLF 160 (843)
Q Consensus 81 ~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~w~p~~~t~lsd~Ev~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~ 160 (843)
.|+|+.|.+.++++|.+|+++|+||++.++++|||.|+|++++.|+.
T Consensus 96 ~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 142 (497)
T 2csx_A 96 RTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA--------------------------------- 142 (497)
T ss_dssp ETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc---------------------------------
Confidence 69999999999999999999999999999999999999998765431
Q ss_pred cCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcc
Q 003160 161 GDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTL 240 (843)
Q Consensus 161 g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~ 240 (843)
+
T Consensus 143 ----------------------------~--------------------------------------------------- 143 (497)
T 2csx_A 143 ----------------------------E--------------------------------------------------- 143 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCeeEe
Q 003160 241 NEVAGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELTIM 320 (843)
Q Consensus 241 ~~~~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~~~ 320 (843)
.++|+|||.+++.+.++||||+++++++++++++++++..+.
T Consensus 144 --------------------------------------~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~ 185 (497)
T 2csx_A 144 --------------------------------------DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQ 185 (497)
T ss_dssp ----------------------------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBC
T ss_pred --------------------------------------CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeC
Confidence 045999999999999999999999999999999998777788
Q ss_pred cchhHHHHHHHhh-CCCceeeee--ec-ccCCCCceEEEcCCcccEEEecChhHHHHHHhhhcCCCceeEecCCCceEEE
Q 003160 321 PERFEKIYNHWLS-NIKDWCISR--QL-WWGHRIPVWYIVGKEEEYIVARNADEALEKAHQKYGKNVEIYQDPDVLDTWF 396 (843)
Q Consensus 321 P~~~~~~~~~~l~-~l~DW~ISR--q~-~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvlD~WF 396 (843)
|+..++.+.+|++ +++|||||| |+ +||+|+|.. ..+++||||
T Consensus 186 p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~----------------------------------~~~~i~vW~ 231 (497)
T 2csx_A 186 PDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFD----------------------------------PEHTIYVWF 231 (497)
T ss_dssp SHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTE----------------------------------EEEEECSHH
T ss_pred cHHHHHHHHHHHhcCCccccccccCCCCCCceecCCC----------------------------------CCceEEEec
Confidence 9999999999996 799999999 65 799999931 136889999
Q ss_pred ecCcccccccCCCCCChhhhhhcCCCcEEEEeehhhh----hHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCccccc
Q 003160 397 SSALWPFSTLGWPDVSADDFKKFYPTTMLETGHDILF----FWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKT 472 (843)
Q Consensus 397 dS~l~~~~~~g~p~~~~~~~~~~~P~d~~~~G~Di~~----~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS 472 (843)
||+++|.+.+ +.+ .+ ++||.|++++|+||++ ||++.+.++ |..||+++++||||++ +|+|||||
T Consensus 232 ds~~~~~s~~--~~~--~~--~~~p~di~~~G~D~~~~H~~~~~a~l~~~-----g~~~~~~~~~~G~v~~-~G~KMSKS 299 (497)
T 2csx_A 232 DALFNYISAL--EDK--VE--IYWPADLHLVGKDILRFHTVYWPAFLMSL-----GYELPKKVFAHGWWTV-EGKKMSKT 299 (497)
T ss_dssp HHHTHHHHTT--TTT--HH--HHCSCSCEEEEGGGHHHHHTHHHHHHHHH-----TCCCCSCEEEECCEES-SSSBCCTT
T ss_pred ccchhhcccC--CCc--ch--hhCCceEEEeecchhHhHHHHHHHHHHHc-----CCCCCcEEEECcEEEe-CCceeCCc
Confidence 9998887766 221 22 6679999999999999 566665443 5568899999999995 99999999
Q ss_pred CCCccChhhHHHhhChhHHHHHHHhCCc-ccccccCHHHHHH--HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhcc
Q 003160 473 LGNVIDPIDTIKEFGADALRFTISLGTA-GQDLSLSIERLTA--NKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKF 549 (843)
Q Consensus 473 ~GNvI~p~dii~~yGaDalR~~l~~~~~-~~D~~f~~~~~~~--~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~ 549 (843)
+||+|+|.+++++||+|++||||++.++ ++|++|+++.+.+ ++++++++||++.++...+.....
T Consensus 300 ~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~------------ 367 (497)
T 2csx_A 300 LGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG------------ 367 (497)
T ss_dssp TTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST------------
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 9999999999999999999999998655 9999999999987 455788899987665442210000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccC-CChHHHHHHHHHH
Q 003160 550 DEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRS-EYDSDAIIAQAVL 628 (843)
Q Consensus 550 ~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~-~~~~~~~~~~~~l 628 (843)
.. . . +..|+|++++++.+++.+.++|++|+|+.|++.+++|+ +.+|+|++.+|||...+ .+......+..++
T Consensus 368 -~~--~-~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~--~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~ 440 (497)
T 2csx_A 368 -GE--V-S-GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKERKKEELQKVLYAL 440 (497)
T ss_dssp -TC--B-C-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HHHHHHHHHHCHHHHHTTSCHHHHHHHHHHH
T ss_pred -CC--C-C-chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--HHHHHHHHhcCchhhcccccHHHHHHHHHHH
Confidence 00 0 1 34689999999999999999999999999999999998 58999999999995543 2223445677888
Q ss_pred HHHHHHHHHHhCCCchhhHHHHHHHhccC
Q 003160 629 LYIFENILKLLHPFMPFVTEELWQSLRKR 657 (843)
Q Consensus 629 ~~~l~~~l~LL~P~~P~iaEeiw~~L~~~ 657 (843)
+.+++.+++||+|||||+|||||+.|+..
T Consensus 441 ~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 441 VDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 89999999999999999999999999864
No 16
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=1.7e-39 Score=309.83 Aligned_cols=140 Identities=45% Similarity=0.790 Sum_probs=133.7
Q ss_pred CCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCchhhhhcccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEe
Q 003160 132 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEHYSQFIGMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKI 211 (843)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~y~~l~g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~ 211 (843)
.|+++||+|++ +++.+|+|||||||||+||+||||||+++||++|+|++|.|||. ++.+||+.++||++++|||+||+
T Consensus 3 ~~~~~~v~F~~-~~~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~~l~g~~~~~P~~-~~~ipI~~~~~V~~~~GTG~V~~ 80 (147)
T 1wka_A 3 PGKLYTLRYEV-EGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLT-EVWIPILADPAVEKDFGTGALKV 80 (147)
T ss_dssp -CEEEEEEEEB-TTSCEEEEEESCGGGGGGCCEEEECTTCTTTGGGTTCEEECTTS-SCEEEEEECTTCCTTSTTSEEEE
T ss_pred cceEEEEEEEC-CCCcEEEEEECCceecccceEEEECCCCchHHHhcCCEEECCCC-CCeeEEEEeCccccCCCCCcEEE
Confidence 58899999999 66789999999999999999999999999999999999999995 89999999999999999999999
Q ss_pred cCCCCHHhHHHHHHhCCCceeeccCCCcccccCCC----CCCCcHHHHHHHHHHHHHHcCCceeeccc
Q 003160 212 SPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGL----FRGLDRFEARKKLWSDLEETGLAVKKEPH 275 (843)
Q Consensus 212 ~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~----~~G~~~~~ar~~i~~~L~~~g~l~~~~~~ 275 (843)
|||||++||++|++||||+++++|++|+| +++. |.|++++|||++|++.|+++|++.+.++|
T Consensus 81 ~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 81 TPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp CTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 99999999999999999999999999999 6777 99999999999999999999999988765
No 17
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=8.8e-37 Score=303.73 Aligned_cols=145 Identities=31% Similarity=0.448 Sum_probs=131.7
Q ss_pred CCeEEEEEEEecCC------CeEEEEEeCCccccccCcEEEEcCC---------Cchh----------------------
Q 003160 132 PGTLYYIKYRVAGR------SDFLTIATTRPETLFGDVALAVNPQ---------DEHY---------------------- 174 (843)
Q Consensus 132 ~~~~~~~~~~~~~~------~~~l~v~TtrPeTl~g~~ai~v~P~---------~~~y---------------------- 174 (843)
.++.+||+|++.+. +.+++||||||||||||+||||||+ +++|
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~ 81 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFP 81 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCTTSCEEEEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhcCcEEEEEEE
Confidence 46789999999764 6899999999999999999999999 5566
Q ss_pred -hhhcccEEEcCCCC--CCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccCCCcccccCCCCCCCc
Q 003160 175 -SQFIGMMAIVPMTY--GRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLFRGLD 251 (843)
Q Consensus 175 -~~l~g~~~~~P~~~--~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~ 251 (843)
.+|.|.+|.|||.. ++.+||+.++||++++|||+||+|||||++||++|++||||+++++|++|.|++. | |.|+.
T Consensus 82 G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~ 159 (186)
T 1wny_A 82 GKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLY 159 (186)
T ss_dssp HHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCB
T ss_pred cccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcC
Confidence 45899999999953 7899999999999999999999999999999999999999999999999999977 7 99999
Q ss_pred HHHHHHHHHHHHHHcCCceeecccccc
Q 003160 252 RFEARKKLWSDLEETGLAVKKEPHTLR 278 (843)
Q Consensus 252 ~~~ar~~i~~~L~~~g~l~~~~~~~~~ 278 (843)
++||++.|++.|+++|++.+.+++.|+
T Consensus 160 v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 160 FREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 999999999999999999999999885
No 18
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.8e-35 Score=330.71 Aligned_cols=144 Identities=21% Similarity=0.189 Sum_probs=113.5
Q ss_pred hhhcC--CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe-eeEECCCCCcccccCCCccChhhHHHh-hChhHH
Q 003160 416 FKKFY--PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADAL 491 (843)
Q Consensus 416 ~~~~~--P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDal 491 (843)
+.++| |.|++++|+|+++||.....+++.++.|..||.++++| |+|. .+|+|||||+||+|+|.+++++ ||+|++
T Consensus 237 ~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~~ll~~g~g~D~l 315 (414)
T 3c8z_A 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDGHKMSKSRGNLVLVSQLRAQGVDPSAI 315 (414)
T ss_dssp HHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC--------------CBHHHHHHTTCCHHHH
T ss_pred HHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCCeEcccccCCcCCHHHHhhccCCcchh
Confidence 34455 89999999999999999999998888888899999999 7886 6999999999999999999999 999999
Q ss_pred HHHHHhCCcccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHH
Q 003160 492 RFTISLGTAGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHM 571 (843)
Q Consensus 492 R~~l~~~~~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~ 571 (843)
||||++..+++|++|+++.+.+..+++++|||+++++ . . + .++.
T Consensus 316 R~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~----~---~---------------------~--------~~~~ 359 (414)
T 3c8z_A 316 RLGLFSGHYREDRFWSNEVLDEANARLARWRSATALP----E---A---------------------P--------DATD 359 (414)
T ss_dssp HHHHHTSCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----C---B---------------------S--------CCHH
T ss_pred eeEEEecCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----c---c---------------------h--------hHHH
Confidence 9999995459999999999999999999999986432 0 0 0 1256
Q ss_pred HHHHHHHHh-hcCChHHHHHHHHHHH
Q 003160 572 LIDTVTASY-DKYFFGDVGRETYDFF 596 (843)
Q Consensus 572 ~~~~v~~~~-e~~~f~~a~~~i~~f~ 596 (843)
+++++.++| ++|+|+.|+..|++|+
T Consensus 360 ~~~~v~~a~~d~~~~~~Al~~i~~~~ 385 (414)
T 3c8z_A 360 VIARVRQYLADDLDTPKALAALDGWC 385 (414)
T ss_dssp HHHHHHHHHHBTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 788899999 7999999999999998
No 19
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.7e-35 Score=332.28 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=116.5
Q ss_pred hhhcC--CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe-eeEECCCCCcccccCCCccChhhHHHh-hChhHH
Q 003160 416 FKKFY--PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADAL 491 (843)
Q Consensus 416 ~~~~~--P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDal 491 (843)
..++| |.|+|.+|+|++|+|....++++.+++++ ||.++++| |||. .+|+|||||+||+|+|.+++++ ||+|++
T Consensus 246 ~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~-~~~~~w~H~g~v~-~~G~KMSKSlGN~it~~dll~~gyg~d~l 323 (501)
T 3sp1_A 246 NLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNK-KWCDVFVHGEFLI-MDYNKMSKSRGNFITVKDLEDQNFSPLDF 323 (501)
T ss_dssp HHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTS-CCCSEEEEECCEE-CC----------CCCHHHHHHTTCCHHHH
T ss_pred HHHHcCCCceEEeeccccccchHHHHHHHHHHccCC-CCCeEEEEeeeEe-eCCeEccccCCCcCCHHHHHhcCCCHHHH
Confidence 34455 45999999999999999999999998886 88999999 8887 7999999999999999999999 999999
Q ss_pred HHHHHhCCcccccccCHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHH
Q 003160 492 RFTISLGTAGQDLSLSIERLTANKAF----TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVS 567 (843)
Q Consensus 492 R~~l~~~~~~~D~~f~~~~~~~~~~~----~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~ 567 (843)
||||++..+.+|++|+++.+...++. +++|||+++.+...... ........ .+ ..
T Consensus 324 R~~lls~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~-----------------~~~~~~~~-~~---~~ 382 (501)
T 3sp1_A 324 RYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLN-----------------TLNKDLKN-FG---FS 382 (501)
T ss_dssp HHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH-----------------HHHSCTTS-CS---SH
T ss_pred HHHHHhccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc-----------------cccccccc-hh---hh
Confidence 99999986699999999999998888 99999987643210000 00000000 00 12
Q ss_pred HHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Q 003160 568 KLHMLIDTVTASYD-KYFFGDVGRETYDFF 596 (843)
Q Consensus 568 ~l~~~~~~v~~~~e-~~~f~~a~~~i~~f~ 596 (843)
.+..+...+.++|+ +|+...|+..+++++
T Consensus 383 ~~~~~~~~f~~am~dDlnt~~al~~l~~~~ 412 (501)
T 3sp1_A 383 VEKEYYDSFVEKISFDLNVAQGLALLWEII 412 (501)
T ss_dssp HHHHHHHHHHHHHHBTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 34566778888997 899999999999997
No 20
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3.2e-34 Score=321.03 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=128.9
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCCc
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGTA 500 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~~ 500 (843)
+.|+|.+|.|++|+|+.++++.+.+++|+ ||.++++|+.+++.+|+|||||+||+|+|.+++++||+|++|||+++..+
T Consensus 223 ~~dih~gG~Dl~FpHheneiaqs~a~~g~-p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~y 301 (462)
T 3tqo_A 223 PFDIHGGGLDLKFPHHENEIAQSEAGEEK-PFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHY 301 (462)
T ss_dssp SEEEEEEEGGGTTTHHHHHHHHHHHHHSS-CCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCT
T ss_pred CeEEEccccccccHHHHhHHHHHHHHcCC-CcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCC
Confidence 57999999999999999999999999998 99999999887789999999999999999999999999999999999877
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHh
Q 003160 501 GQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASY 580 (843)
Q Consensus 501 ~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~ 580 (843)
.++++|+++.+...++++++|||+++++.. ..+ + .+..+...+.++|
T Consensus 302 r~~l~fs~~~l~~a~~~l~rl~~~~~~~~~----~~~------------------------~-----~~~~~~~~~~~a~ 348 (462)
T 3tqo_A 302 RNPLSYSKENLENGRLALERFYLALRGLPV----VNH------------------------E-----KTSSYTDRFYEAM 348 (462)
T ss_dssp TSCEEECHHHHHHHHHHHHHHHHHHTTCCC---------------------------------------CHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHHHHhhh----ccc------------------------h-----hHHHHHHHHHHHH
Confidence 999999999999999999999999865421 000 0 1234567788888
Q ss_pred h-cCChHHHHHHHHHHHHHhhhHHHHH
Q 003160 581 D-KYFFGDVGRETYDFFWSDFADWYIE 606 (843)
Q Consensus 581 e-~~~f~~a~~~i~~f~~~~~~~~Yle 606 (843)
+ +|+...|+..+++++ ...|.++.
T Consensus 349 ~dD~nt~~a~~~l~~~~--~~~n~~~~ 373 (462)
T 3tqo_A 349 DDDFNTPIAFALLFEMV--REINRFRD 373 (462)
T ss_dssp TBTCCHHHHHHHHHHHH--HHHHHHHH
T ss_pred HhccChHHHHHHHHHHH--HHHhhhhc
Confidence 7 899999999999998 45565543
No 21
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=2.7e-33 Score=281.04 Aligned_cols=140 Identities=34% Similarity=0.525 Sum_probs=124.6
Q ss_pred CCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCch-------------hh--------------------hhc
Q 003160 132 PGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH-------------YS--------------------QFI 178 (843)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~-------------y~--------------------~l~ 178 (843)
.|..++|+|++.+.+.+|+||||||||||||+||||||++++ |. .|.
T Consensus 9 ~~~g~~v~F~~~~~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~ 88 (196)
T 2ajg_A 9 MGEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDT 88 (196)
T ss_dssp --CEEEEEEEBTTCSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGGSCCCEEEE
T ss_pred cCceEEEEEEeCCCCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEeeeeCCEEc
Confidence 478899999998878899999999999999999999999862 11 167
Q ss_pred ccEEEcCCCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeecc---------CCCccccc-----C
Q 003160 179 GMMAIVPMTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMN---------KDGTLNEV-----A 244 (843)
Q Consensus 179 g~~~~~P~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~---------~~G~~~~~-----~ 244 (843)
|.+|.|||+ ++.+||+.++||++++|||+||+|||||++||++|++||||++++|+ ++|.++++ +
T Consensus 89 G~~~~~P~~-~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns 167 (196)
T 2ajg_A 89 GFKAVHPLT-GEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNS 167 (196)
T ss_dssp EEEEECTTT-CCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSS
T ss_pred CCEEECCCC-CCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecC
Confidence 999999995 89999999999999999999999999999999999999999999996 46666653 4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCceee
Q 003160 245 GLFRGLDRFEARKKLWSDLEETGLAVKK 272 (843)
Q Consensus 245 g~~~G~~~~~ar~~i~~~L~~~g~l~~~ 272 (843)
|.|+|++++||++.|++.|+++|++.+.
T Consensus 168 ~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 168 GEFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred cccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 7899999999999999999999998653
No 22
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.98 E-value=2.4e-32 Score=277.13 Aligned_cols=129 Identities=33% Similarity=0.578 Sum_probs=112.6
Q ss_pred eEEEEEeCCccccccCcEEEEcCCCchhh----------------------------------------hhcccEEEcCC
Q 003160 147 DFLTIATTRPETLFGDVALAVNPQDEHYS----------------------------------------QFIGMMAIVPM 186 (843)
Q Consensus 147 ~~l~v~TtrPeTl~g~~ai~v~P~~~~y~----------------------------------------~l~g~~~~~P~ 186 (843)
.+++|||||||||||++||||||++++.. .|.|.+|.|||
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl 117 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPA 117 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTT
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhHHHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCC
Confidence 69999999999999999999999986310 14588999999
Q ss_pred CCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHHhCCCceeeccC-------CCcccc-----cCCCCCCCcHHH
Q 003160 187 TYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-------DGTLNE-----VAGLFRGLDRFE 254 (843)
Q Consensus 187 ~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~-------~G~~~~-----~~g~~~G~~~~~ 254 (843)
. ++.+||+.++||++++|||+||+|||||++||++|++||||++++|++ +|.+++ +++.|.|+++++
T Consensus 118 ~-~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~~~~~~~Gl~~~e 196 (219)
T 3o0a_A 118 N-GEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSET 196 (219)
T ss_dssp T-CCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEECSCGGGTTCBHHH
T ss_pred C-CCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEecCCCCCCCCHHH
Confidence 5 899999999999999999999999999999999999999999999987 344443 468999999999
Q ss_pred HHHHHHHHHHHcCCceeecccc
Q 003160 255 ARKKLWSDLEETGLAVKKEPHT 276 (843)
Q Consensus 255 ar~~i~~~L~~~g~l~~~~~~~ 276 (843)
||++|++.|+++|++.+..+|.
T Consensus 197 A~~~Ii~~L~~~g~l~~~~~yr 218 (219)
T 3o0a_A 197 AKRKITEWLQDRGLGEKKVSYR 218 (219)
T ss_dssp HHHHHHHHHHHTTSEEEC----
T ss_pred HHHHHHHHHHHCCCeeeeeeec
Confidence 9999999999999999877663
No 23
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.97 E-value=2.5e-32 Score=309.61 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=129.3
Q ss_pred CCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe-eeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhCC
Q 003160 421 PTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH-GLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLGT 499 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h-g~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~ 499 (843)
|.|+|++|+|++|||....++++.++.|. ||.++++| |||+ .+|+|||||+||+|+|.+++++||+|++|||+++..
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~~g~-~~~~~~~h~g~v~-~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~ 297 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDG-QYVNYWMHSGMVM-VDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGH 297 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHHSSS-CCEEEECCBCCEE-ETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSC
T ss_pred CceEEeccCccCchHHHHHHHHHHHhcCC-CCCcEEEEeeEEE-ECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCC
Confidence 67899999999999999998888887776 67777777 9998 689999999999999999999999999999999965
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHH
Q 003160 500 AGQDLSLSIERLTANKAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTAS 579 (843)
Q Consensus 500 ~~~D~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~ 579 (843)
+++|++||++.+....+.++++||+++++ .. . .+. | .+..+.+.+.++
T Consensus 298 ~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~--~--------------------~~~-d-----~l~~~~~~~~~a 345 (461)
T 1li5_A 298 YRSQLNYSEENLKQARAALERLYTALRGT----DK--T--------------------VAP-A-----GGEAFEARFIEA 345 (461)
T ss_dssp TTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT--T--------------------SCC-C-----SCHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc--C--------------------CCH-H-----HHHHHHHHHHHH
Confidence 59999999999999999999999987543 10 0 011 2 356788899999
Q ss_pred h-hcCChHHHHHHHHHHHHHhhhHHHHHh
Q 003160 580 Y-DKYFFGDVGRETYDFFWSDFADWYIEA 607 (843)
Q Consensus 580 ~-e~~~f~~a~~~i~~f~~~~~~~~Yle~ 607 (843)
| ++|+++.|+..+++|+ ..+|.|++.
T Consensus 346 m~dd~n~~~Al~~l~~l~--~~~N~~~~~ 372 (461)
T 1li5_A 346 MDDDFNTPEAYSVLFDMA--REVNRLKAE 372 (461)
T ss_dssp HHBTSCHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH--HHHHHHHhc
Confidence 9 9999999999999998 567999854
No 24
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.97 E-value=9.1e-31 Score=273.05 Aligned_cols=135 Identities=25% Similarity=0.395 Sum_probs=115.1
Q ss_pred CeEEEEEeCCccccccCcEEEEcCCCc----------------h------------------------hhhhcccEEEcC
Q 003160 146 SDFLTIATTRPETLFGDVALAVNPQDE----------------H------------------------YSQFIGMMAIVP 185 (843)
Q Consensus 146 ~~~l~v~TtrPeTl~g~~ai~v~P~~~----------------~------------------------y~~l~g~~~~~P 185 (843)
+.+|+|||||||||||++||||||+.+ + +.+|+|.+|.||
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~G~~~~~P 111 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAP 111 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCCCCSEEEEHHHHTTCEEECT
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhcccccEEEEEEecccccCCEEECC
Confidence 478999999999999999999999932 1 235899999999
Q ss_pred CCCCCeeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHH-------hC-------CCceeeccC--CCccc--------
Q 003160 186 MTYGRHVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK-------LG-------LPILNVMNK--DGTLN-------- 241 (843)
Q Consensus 186 ~~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~-------~~-------l~~~~~i~~--~G~~~-------- 241 (843)
|+.++.+||++++||++++|||+||+|||||++||++|++ || ||++++|+. +|.+.
T Consensus 112 l~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~ 191 (261)
T 2wfg_A 112 YAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDL 191 (261)
T ss_dssp TCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHT
T ss_pred CCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccc
Confidence 9646789999999999999999999999999999999999 99 899999987 44332
Q ss_pred -------------------------cc--CCCCCCCcHHHHHHHHHHHHHHcCCceeeccccccCC
Q 003160 242 -------------------------EV--AGLFRGLDRFEARKKLWSDLEETGLAVKKEPHTLRVP 280 (843)
Q Consensus 242 -------------------------~~--~g~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p 280 (843)
.. +|.|.|++++||++.|++.|+++|++.+..++.|+--
T Consensus 192 ~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~ 257 (261)
T 2wfg_A 192 KIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHH 257 (261)
T ss_dssp TCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC------
T ss_pred cccccchhhhhhhhhhhhhhcccccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeeccc
Confidence 11 7889999999999999999999999999998887643
No 25
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.8e-29 Score=256.95 Aligned_cols=135 Identities=25% Similarity=0.431 Sum_probs=114.1
Q ss_pred EEEEEEEec-----------CCCeEEEEEeCCccccccCcEEEEcCCCc----------------h------hhh-----
Q 003160 135 LYYIKYRVA-----------GRSDFLTIATTRPETLFGDVALAVNPQDE----------------H------YSQ----- 176 (843)
Q Consensus 135 ~~~~~~~~~-----------~~~~~l~v~TtrPeTl~g~~ai~v~P~~~----------------~------y~~----- 176 (843)
..-++|++. +.+.+|+|||||||||+|++||||||+++ + |++
T Consensus 7 ~~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 86 (252)
T 2wfd_A 7 YTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDN 86 (252)
T ss_dssp EEEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSST
T ss_pred EEEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccC
Confidence 455677753 34579999999999999999999999972 1 222
Q ss_pred -------------hcccEEEcCCCCC-CeeeEEeCCCCCccCCCCeEEecCCCCHHhHHH----------HHHhCCC---
Q 003160 177 -------------FIGMMAIVPMTYG-RHVPIISDKYVDKEFGTGVLKISPGHDHNDYLL----------ARKLGLP--- 229 (843)
Q Consensus 177 -------------l~g~~~~~P~~~~-~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~~~~l~--- 229 (843)
|+|.+|.|||+ + +.+||++++||++++|||+||+|||||++||++ |++||||
T Consensus 87 ~~~~~~~~~~G~~l~G~~~~~Pl~-~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~ 165 (252)
T 2wfd_A 87 GVVPVVKELMGEEILGASLSAPLT-SYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDM 165 (252)
T ss_dssp TCCCEEEECCHHHHTTCEEECSSC-SSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGG
T ss_pred cccEEEEEEEcccccCCEEEcCCC-CCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchh
Confidence 89999999995 6 689999999999999999999999999999994 7889988
Q ss_pred -----ceeeccC---------------------------------------CCcccccCCCCCCCcHHHHHHHHHHHHHH
Q 003160 230 -----ILNVMNK---------------------------------------DGTLNEVAGLFRGLDRFEARKKLWSDLEE 265 (843)
Q Consensus 230 -----~~~~i~~---------------------------------------~G~~~~~~g~~~G~~~~~ar~~i~~~L~~ 265 (843)
++.+|+. +|+|+ +|.|+|+++++|+++|++.|++
T Consensus 166 ~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~ 243 (252)
T 2wfd_A 166 VLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMID 243 (252)
T ss_dssp TTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHH
T ss_pred ccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe--eeccCCeEHHHHHHHHHHHHHH
Confidence 4555532 36665 7889999999999999999999
Q ss_pred cCCceee
Q 003160 266 TGLAVKK 272 (843)
Q Consensus 266 ~g~l~~~ 272 (843)
+|++.+.
T Consensus 244 ~g~~~~~ 250 (252)
T 2wfd_A 244 AGDALIY 250 (252)
T ss_dssp TTSEEEE
T ss_pred CCCCccc
Confidence 9998764
No 26
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.95 E-value=5.1e-29 Score=257.31 Aligned_cols=156 Identities=18% Similarity=0.287 Sum_probs=130.2
Q ss_pred CCCCCcccCcccc--cccccCCeEEEEEEEecCCCeEEEEEeCCccccccCcEEEEcCCCch------------------
Q 003160 114 SPNLQTAVSDLEV--EYSEEPGTLYYIKYRVAGRSDFLTIATTRPETLFGDVALAVNPQDEH------------------ 173 (843)
Q Consensus 114 ~p~~~t~lsd~Ev--~~~~~~~~~~~~~~~~~~~~~~l~v~TtrPeTl~g~~ai~v~P~~~~------------------ 173 (843)
..+++|+||+.|- .|+++.+.++ .+.+.+.+.+++||||||||||||+||||||+.++
T Consensus 47 ~~~~~~~l~~f~~~~~~k~~~~~~~--~~~l~g~~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~ 124 (311)
T 3pz6_A 47 AEKLNIKLPRFYSNPKNKAIFDQLW--ENQVDNAKVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAA 124 (311)
T ss_dssp CCTTSCCCCCCCCCHHHHHHHHHHH--TTTCCSCEEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHH
T ss_pred HHHhCCCccccccCCCcccccchhe--eeecCCCCEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHH
Confidence 4578999999987 4788888887 56777778999999999999999999999999421
Q ss_pred ----h--------------------hhhcccEEEcCCCCCC-eeeEEeCCCCCccCCCCeEEecCCCCHHhHHHHHH---
Q 003160 174 ----Y--------------------SQFIGMMAIVPMTYGR-HVPIISDKYVDKEFGTGVLKISPGHDHNDYLLARK--- 225 (843)
Q Consensus 174 ----y--------------------~~l~g~~~~~P~~~~~-~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~--- 225 (843)
| ++|+|.+|.|||. ++ .+||++++||++++|||+||+|||||++||++|++
T Consensus 125 e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~hPl~-~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk 203 (311)
T 3pz6_A 125 VNMAHQGLNNNKPFGELDFISEISGSDLLLATVRAPLS-PYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILE 203 (311)
T ss_dssp HHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEECTTC-SSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHT
T ss_pred HHHHHhcccccccCCCcEEEEEEEhHHhcCCEEECCCC-CCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhh
Confidence 1 1377999999995 65 89999999999999999999999999999997766
Q ss_pred --------hCC---------CceeeccC---------------------------------------CCcccccCCCCCC
Q 003160 226 --------LGL---------PILNVMNK---------------------------------------DGTLNEVAGLFRG 249 (843)
Q Consensus 226 --------~~l---------~~~~~i~~---------------------------------------~G~~~~~~g~~~G 249 (843)
+|| +++.+|+. +|.|. +|+|+|
T Consensus 204 ~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G 281 (311)
T 3pz6_A 204 NRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAG 281 (311)
T ss_dssp TGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTT
T ss_pred ccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCC
Confidence 664 66666542 24443 689999
Q ss_pred CcHHHHHHHHHHHHHHcCCceeecc
Q 003160 250 LDRFEARKKLWSDLEETGLAVKKEP 274 (843)
Q Consensus 250 ~~~~~ar~~i~~~L~~~g~l~~~~~ 274 (843)
+++.+||++|.++|.++|.......
T Consensus 282 ~~V~eAk~~i~~~L~~~g~a~~yyE 306 (311)
T 3pz6_A 282 QSVKDCKQSCRDLLVQNNQCIVYSE 306 (311)
T ss_dssp SBHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEHHHHHHHHHHHHHHCCCceEEcc
Confidence 9999999999999999999876543
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.79 E-value=6.7e-19 Score=206.00 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=119.6
Q ss_pred EEEEeeeEECCCCCcccccCCCccChhhHHHh-------------------------hChhHHHHHHHhCCcccccccCH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-------------------------FGADALRFTISLGTAGQDLSLSI 508 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-------------------------yGaDalR~~l~~~~~~~D~~f~~ 508 (843)
.++.||||+ .+|+|||||+||+|+|.|++++ +|+|++|||+++..+.+|++||+
T Consensus 381 ~H~~~g~v~-~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~ 459 (592)
T 1iq0_A 381 HHLAYETVL-LEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRY 459 (592)
T ss_dssp EEEEECCEE-ETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECH
T ss_pred EEEEeeEEE-cCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecH
Confidence 567899998 7899999999999999999999 99999999999988899999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHHHhhcCChHH
Q 003160 509 ERLTAN-KAFTNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTASYDKYFFGD 587 (843)
Q Consensus 509 ~~~~~~-~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~~~e~~~f~~ 587 (843)
+.+... .+....+.++..++.+.+..... .+. + ........+.-++..+..+.+.+.+++++++++.
T Consensus 460 d~~~~~~~~~~~ylqya~aR~~sil~k~~~---------~~~--~-~~~l~~~~e~~L~~~l~~~~~~v~~a~~~~~p~~ 527 (592)
T 1iq0_A 460 QEALSFEGDTGPYVQYAHARAHSILRKAGE---------WGA--P-DLSQATPYERALALDLLDFEEAVLEAAEERTPHV 527 (592)
T ss_dssp HHHHCSSSSSHHHHHHHHHHHHHHHHHHCC---------CCC--C-CGGGCCHHHHHHHHHHTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhhcc---------cCC--C-ccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999862 22333444443333221100000 000 0 0011234577788899999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhh-----hhccCCCh--HHHHHHHHHHHHHHHHHHHHhCCCch
Q 003160 588 VGRETYDFFWSDFADWYIEASKA-----RLYRSEYD--SDAIIAQAVLLYIFENILKLLHPFMP 644 (843)
Q Consensus 588 a~~~i~~f~~~~~~~~Yle~~K~-----~l~~~~~~--~~~~~~~~~l~~~l~~~l~LL~P~~P 644 (843)
++..++++. ...|.|.+.++| ++..++.. ..|.........+|...+.||.-=.|
T Consensus 528 ~~~yl~~La--~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 528 LAQYLLDLA--ASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHH--HHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHH--HHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999997 556777787765 55444222 13444445566778888888864333
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.75 E-value=1.3e-17 Score=195.66 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=118.9
Q ss_pred EEEEeeeEECCCCCcccccCC--CccChhhHHHh---------------------------hChhHHHHHHHhCCccccc
Q 003160 454 HVYLHGLIRDSQGRKMSKTLG--NVIDPIDTIKE---------------------------FGADALRFTISLGTAGQDL 504 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~G--NvI~p~dii~~---------------------------yGaDalR~~l~~~~~~~D~ 504 (843)
.++.||+|. .+|.|||||+| |+|++.|++++ +|+||+||++++..+.+|+
T Consensus 411 ~h~~~g~V~-~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~ 489 (629)
T 2zue_A 411 YHLAYEHVE-RPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKI 489 (629)
T ss_dssp EEEEECCEE-BTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCE
T ss_pred EEEEeeeEE-cCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCC
Confidence 578899998 78999999999 99999999999 9999999999998889999
Q ss_pred ccCHHHHHH-HHHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHHHHHHHHHH
Q 003160 505 SLSIERLTA-NKAFTNKLWNAGKFILQNL-----PSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLHMLIDTVTA 578 (843)
Q Consensus 505 ~f~~~~~~~-~~~~~nkl~N~~rf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~v~~ 578 (843)
+||++.+.+ ..+..+-+-++..++.+.+ .+... . ...+. ...........++-++..+..+...+.+
T Consensus 490 ~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~-~-~~~~~-----~~~~~~l~~~~e~~L~~~l~~fp~~v~~ 562 (629)
T 2zue_A 490 IFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKV-D-PETLF-----KNADFTKLSERERELVIMLSKFPRIVEQ 562 (629)
T ss_dssp ECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCC-C-HHHHH-----HHCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhcccccc-c-ccccc-----ccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999874 1112222222222111111 00000 0 00000 0000111245677889999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCh--HHHHHHHHHHHHHHHHHHHHhCCCch
Q 003160 579 SYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD--SDAIIAQAVLLYIFENILKLLHPFMP 644 (843)
Q Consensus 579 ~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~--~~~~~~~~~l~~~l~~~l~LL~P~~P 644 (843)
++++++++.++..++++. ..|..+| +.+ ++..++.. ..|.........+|...+.||.-=.|
T Consensus 563 a~~~~~p~~l~~yl~~La-~~fn~fy-~~~--~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 563 AGKDVKPHLIAWFANELA-SLFNKFY-MDH--PVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHTTCTHHHHHHHHHHH-HHHHHHH-HHC--CSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHhCCHHHHHHHHHHHH-HHHHHHH-Hhc--cccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999997 4555555 444 33333222 13444445667788888888864444
No 29
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.70 E-value=8.9e-17 Score=181.06 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=136.3
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCCCCce-EEEEeeeE-ECCCCC--cccccCCCccChhhHHHhhChhHHHHHHHhCC
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGSVPFS-HVYLHGLI-RDSQGR--KMSKTLGNVIDPIDTIKEFGADALRFTISLGT 499 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~-~v~~hg~v-~d~~G~--KMSKS~GNvI~p~dii~~yGaDalR~~l~~~~ 499 (843)
+++.|.|+. .|+.++. ..+...|..|.+ .++.||+| ++.+|+ |||||+||+|+|.++++++|+|++|||+++..
T Consensus 239 Iyv~G~dq~-~~f~~l~-~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~ 316 (464)
T 3fnr_A 239 INIWGADHH-GYIPRMK-AAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKK 316 (464)
T ss_dssp EEEEEGGGG-GGHHHHH-HHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSC
T ss_pred EEEecCcHH-HHHHHHH-HHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcC
Confidence 778999998 5677654 445555666655 67889999 566775 99999999999999999999999999999987
Q ss_pred cccccccCHHHHHHHHH-----H----HHHHHHHHHHHHhcCCCCCchhHHHHHHhhccchhhhhcCCChhHHHHHHHHH
Q 003160 500 AGQDLSLSIERLTANKA-----F----TNKLWNAGKFILQNLPSQNDISRWEILLAYKFDEEECLCKAPLPECWVVSKLH 570 (843)
Q Consensus 500 ~~~D~~f~~~~~~~~~~-----~----~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il~~l~ 570 (843)
+.+|++||++.+....+ + ..++.++++... ..+... ...+...++..|++++.++.
T Consensus 317 ~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~--~~~~~~-------------~~~~~~~L~~~e~~Ll~~L~ 381 (464)
T 3fnr_A 317 CDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAG--KKIDDV-------------MKADLQSLNQDGVNLLFEAL 381 (464)
T ss_dssp TTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTT--CCTTTS-------------TTCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh--ccCCCc-------------cccChhhCChHHHHHHHHHH
Confidence 89999999998865211 1 234444444321 111110 00012234555999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCCh-HHHHHHHHHHHHHHHHHHHHhCCCchh
Q 003160 571 MLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYD-SDAIIAQAVLLYIFENILKLLHPFMPF 645 (843)
Q Consensus 571 ~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~-~~~~~~~~~l~~~l~~~l~LL~P~~P~ 645 (843)
.+.+.+.+++++|+++.+++.+++++ ..+..+|-+ + ++...+++ ...+-++.... +|...+.||.-=.|.
T Consensus 382 ~~~~~v~~a~~~~ep~~i~~yL~~La-~~~n~fY~~-~--~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ape 452 (464)
T 3fnr_A 382 NLKAVLNDAFEARALQKIPDYLKNLA-ANFHKFYNE-N--KVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAKN 452 (464)
T ss_dssp THHHHHHHHHHHTCTTHHHHHHHHHH-HHHHHHHHH-C--CCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHh-C--cCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCchH
Confidence 99999999999999999999999998 567777743 2 22332221 11222222222 788888888766664
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.63 E-value=3.6e-17 Score=189.15 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCcEEEEeehhhhhH----HHHHHHHHhHhhCCCCceEEEEeeeEECC-CCCcccccCCCccChhhHHHhhChhHHHHHH
Q 003160 421 PTTMLETGHDILFFW----VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QGRKMSKTLGNVIDPIDTIKEFGADALRFTI 495 (843)
Q Consensus 421 P~d~~~~G~Di~~~W----~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G~KMSKS~GNvI~p~dii~~yGaDalR~~l 495 (843)
..++.+.|+|+++++ ....+++ ...|..|+ .++.||+|++. +|+|||||+||+|+|.+++++||+|++|+||
T Consensus 230 ~~~vd~~G~Dh~~~h~s~~~~~~i~~--~alG~~~p-~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l 306 (523)
T 1irx_A 230 GVDFEPAGKDHLVAGSSYDTGKEIIK--EVYGKEAP-LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIY 306 (523)
T ss_dssp CCCBCCEEHHHHSTTSHHHHHHHHHH--HHHCCCCC-BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHH
T ss_pred CCCCcCCCcCccCCCcchhhHHHHHH--HHhCCCCC-eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHH
Confidence 344557899999865 2333332 23455343 56667999977 7999999999999999999999999999999
Q ss_pred HhCCcccccccCHH-HHHHHHHHHHHHHHHH
Q 003160 496 SLGTAGQDLSLSIE-RLTANKAFTNKLWNAG 525 (843)
Q Consensus 496 ~~~~~~~D~~f~~~-~~~~~~~~~nkl~N~~ 525 (843)
++..+++|++|+.+ .+....+.++++++++
T Consensus 307 ~~~~~~~~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 307 ARHRPNKEIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp HSSCTTSCEEECCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceeCcchhHHHHHHHHHHHHHHH
Confidence 98777889999999 8888887778888843
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=98.46 E-value=8.5e-07 Score=103.27 Aligned_cols=197 Identities=12% Similarity=0.051 Sum_probs=121.2
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEe---eeEECCCCCcccccCCCccChhhHHHhhCh------------
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLH---GLIRDSQGRKMSKTLGNVIDPIDTIKEFGA------------ 488 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~h---g~v~d~~G~KMSKS~GNvI~p~dii~~yGa------------ 488 (843)
+++.|.|+.-. +.++.. .+...|. |+...+.| |+|. |||||+||+|++.|++++++.
T Consensus 368 IyV~g~~q~~~-f~q~~~-~~~~lG~-~~~~~~~Hv~fg~v~-----kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~ 439 (607)
T 1f7u_A 368 IYVIASQQDLH-AAQFFE-ILKQMGF-EWAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKNENK 439 (607)
T ss_dssp EEECCGGGHHH-HHHHHH-HHHHTTC-GGGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHH
T ss_pred EEEEcChHhhH-HHHHHH-HHHHcCC-CcCcEEEEecccccc-----cccCCCCCcccHHHHHHHHHHHHHHHHHhCccc
Confidence 66788777543 334332 2223344 44444555 3443 799999999999999999844
Q ss_pred ----------------hHHHHHHHhCCcccccccCHHHHHHH-HHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHhhc
Q 003160 489 ----------------DALRFTISLGTAGQDLSLSIERLTAN-KAFTNKLWNAGKFILQ---NLPSQNDISRWEILLAYK 548 (843)
Q Consensus 489 ----------------DalR~~l~~~~~~~D~~f~~~~~~~~-~~~~nkl~N~~rf~~~---~~~~~~~~~~~~~~~~~~ 548 (843)
.++||++++..+.++++||++.+... .+....+-.+..++.+ ...+... . .+.
T Consensus 440 ~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~-~---~~~--- 512 (607)
T 1f7u_A 440 YAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQ-E---KWI--- 512 (607)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCH-H---HHT---
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCc-c---ccc---
Confidence 48999999988899999999998751 1111122222211111 1111110 0 000
Q ss_pred cchhhhhcCC-ChhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhHHHHHhhhhhhccCCChH---HHHHH
Q 003160 549 FDEEECLCKA-PLPECWVVSKLHMLIDTVTASYDKYFFGDVGRETYDFFWSDFADWYIEASKARLYRSEYDS---DAIIA 624 (843)
Q Consensus 549 ~~~~~~~~~~-~~~d~~il~~l~~~~~~v~~~~e~~~f~~a~~~i~~f~~~~~~~~Yle~~K~~l~~~~~~~---~~~~~ 624 (843)
..+...+ ...++.++..|..+...+..++++++.+.++..++++. ..|..+|= .+ ++... +++ .|...
T Consensus 513 ---~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La-~~fn~fY~-~~--~Vl~~-~~~~~~aRL~L 584 (607)
T 1f7u_A 513 ---NADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLT-HQVSSCYD-VL--WVAGQ-TEELATARLAL 584 (607)
T ss_dssp ---TSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHHH-HC--CSTTS-CHHHHHHHHHH
T ss_pred ---ccchhhcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHHH-hC--CCCCC-CHHHHHHHHHH
Confidence 0001112 34577788899999999999999999999999999998 57888883 22 33333 222 23344
Q ss_pred HHHHHHHHHHHHHHhCCCc
Q 003160 625 QAVLLYIFENILKLLHPFM 643 (843)
Q Consensus 625 ~~~l~~~l~~~l~LL~P~~ 643 (843)
......+|...+.||.-=.
T Consensus 585 ~~a~~~vL~~gL~LLGI~~ 603 (607)
T 1f7u_A 585 YGAARQVLYNGMRLLGLTP 603 (607)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 4445567777777776433
No 32
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.40 E-value=0.00026 Score=76.24 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=54.1
Q ss_pred cCCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 419 FYPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 419 ~~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
.+.+++.+.|.||...... ..-+.-.+....| .++.|+++.+.+|+|||||.||+|++.| .+|++|..+.++
T Consensus 168 ~~~~~~v~~G~DQ~~~~~l-~rdla~~~~~~~p--~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 168 HLGVDLAVGGIDQRKIHML-ARENLPRLGYSSP--VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp HTTCSEEEEEGGGHHHHHH-HHHHGGGGTCCCC--EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred hcCCCEEEechhhHHHHHH-HHHHHHhcCCCCc--eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 4689999999999763211 1111122223345 4677899999999999999999999998 599999999986
Q ss_pred Cc
Q 003160 499 TA 500 (843)
Q Consensus 499 ~~ 500 (843)
..
T Consensus 240 ~t 241 (323)
T 2cyb_A 240 YC 241 (323)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.86 E-value=0.0007 Score=76.79 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=48.3
Q ss_pred eEEEEeeeEECCCCCcccccCCC---------------ccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH-H
Q 003160 453 SHVYLHGLIRDSQGRKMSKTLGN---------------VIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA-N 514 (843)
Q Consensus 453 ~~v~~hg~v~d~~G~KMSKS~GN---------------vI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~-~ 514 (843)
-..+-+|++ ..+|+|||||+|| ..+..++.++ |.++++|.|+++.+. ..+.+|+++.+.. +
T Consensus 315 P~y~H~~~L-~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~L~~~~ 393 (553)
T 3aii_A 315 PEFIHYGRL-KMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKKIYGLN 393 (553)
T ss_dssp CEEECCCCB-C-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHHHHHHH
T ss_pred CeEEEeeEE-ecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHHHHHHH
Confidence 355666776 5799999999998 5667888877 999999999999888 7899999999987 5
Q ss_pred HHHHHH
Q 003160 515 KAFTNK 520 (843)
Q Consensus 515 ~~~~nk 520 (843)
++.++.
T Consensus 394 r~~l~~ 399 (553)
T 3aii_A 394 RSILEE 399 (553)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 665544
No 34
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=96.31 E-value=0.0028 Score=76.62 Aligned_cols=79 Identities=20% Similarity=0.420 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHcCCceeeccc--------------cccCCccCCCCCeeEEeeccceeEecchHHHHHHHHHHcCCee
Q 003160 253 FEARKKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALHAVEKGELT 318 (843)
Q Consensus 253 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~r~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~~ 318 (843)
.++-+.++..|.++|++++.+.. +...+.|+|||.+|+.+..+||||+++++++++++.++...
T Consensus 153 ~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~-- 230 (880)
T 4arc_A 153 YRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLD-- 230 (880)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGCT--
T ss_pred HHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcc--
Confidence 45678899999999999865421 12347899999999999999999999999999999997532
Q ss_pred EecchhHHHHHHHhh
Q 003160 319 IMPERFEKIYNHWLS 333 (843)
Q Consensus 319 ~~P~~~~~~~~~~l~ 333 (843)
-+|+..+....+||-
T Consensus 231 ~wp~~v~~~~~~wig 245 (880)
T 4arc_A 231 HWPDTVKTMQRNWIG 245 (880)
T ss_dssp TSCHHHHHHHHHHHC
T ss_pred cccHHHHHHHHhhhc
Confidence 378889999999994
No 35
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=96.07 E-value=0.0045 Score=66.27 Aligned_cols=72 Identities=14% Similarity=-0.045 Sum_probs=51.1
Q ss_pred CCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 421 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
++++.+.|.||....- +|-++- .+....| ..+.+.++...+|+|||||.||.|+..| ++..++.++=.+.+.
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~--r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTR--RLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHH--HHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhHHHHHHHHHHHH--HhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 7898899999965322 222222 2233344 4567888888899999999999999888 666777777666653
No 36
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.88 E-value=0.029 Score=63.33 Aligned_cols=86 Identities=20% Similarity=0.101 Sum_probs=55.9
Q ss_pred CcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 422 TTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 422 ~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
.+..+-|.|.+-.-+.-.. +.-++.-..| ...-++++++.+|+|||||.||+ ...++.++ |.++++|.||+..+.
T Consensus 204 IthviRG~D~~~~t~~q~~-l~~alg~~~P--~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~ 279 (492)
T 2cfo_A 204 ITDVIRGEDHIGNTPKQIL-LYEALGATPP--NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGW 279 (492)
T ss_dssp CSEEEEEGGGTTHHHHHHH-HHHHTTCCCC--EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTB
T ss_pred CCeEEEchhhhhCHHHHHH-HHHHcCCCCc--eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 3455668887754332222 1112222334 44445788999999999999998 67788775 899999999998654
Q ss_pred -c---cccccCHHHH
Q 003160 501 -G---QDLSLSIERL 511 (843)
Q Consensus 501 -~---~D~~f~~~~~ 511 (843)
. .+--|+.+.+
T Consensus 280 s~~~~~~e~~~~~e~ 294 (492)
T 2cfo_A 280 SPPEGVGELFTLDLA 294 (492)
T ss_dssp CCCTTTCSCCCHHHH
T ss_pred CCCCccccccCHHHH
Confidence 2 1234665544
No 37
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=95.87 E-value=0.046 Score=46.51 Aligned_cols=67 Identities=18% Similarity=0.419 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
...+|++.|++++++++.+++.++..|++|+|-.+ +.+.+.....++++++.+|+.+...=..|.++
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999998765 45566777788888888888888766666554
No 38
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.83 E-value=0.007 Score=67.02 Aligned_cols=72 Identities=15% Similarity=0.038 Sum_probs=49.9
Q ss_pred CCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCC-ccChhhHHHhhChhHHHHHHHhC
Q 003160 421 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GN-vI~p~dii~~yGaDalR~~l~~~ 498 (843)
.+++...|.||..... .|-++ -.+.+..| ..+.+.++...+|+|||||.|| .|+..+ ++..++.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdla--rr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLV--RQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHH--HHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHHHHHHHHHHH--HHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 8999999999965322 22222 22333444 4667889989999999999999 898776 345666666666653
No 39
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.75 E-value=0.012 Score=65.20 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=49.5
Q ss_pred CCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCC-cccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 421 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
.+++...|.||..... .+-++ -.+ +..| ..++.+.++...+|. |||||.||.|+..| .++.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~~ni~l~rdla--rr~-~~~~-~~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQRFNLLVGREVQ--RAY-GQSP-QVCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGHHHHHHHHHHH--HHT-TCCC-CEEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHHHHHHHHHHHH--HHh-CCCC-ceEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 4889999999964322 12222 222 3334 456788999999996 99999999999988 777887777764
No 40
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.72 E-value=0.0074 Score=66.84 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=49.3
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHh-hCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHh
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~-~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
|.+++...|.||..... .|-++ -.+ .+..| ..+.+.++...+|+|||||.||.|+..+ ++..++.++=++.+
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla--~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELM--RRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHH--HHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 37899999999965322 12222 223 23334 5677889999999999999999998876 34556666655555
No 41
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.71 E-value=0.0065 Score=67.15 Aligned_cols=72 Identities=11% Similarity=-0.081 Sum_probs=48.7
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHh-hCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHh
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEF-TGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~-~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
|.+++...|.||..... .|-++ -.+ .+..| ..+.+.++...+|+|||||.||.|+..+ ++-.++.++=++.+
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdla--rr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELI--RKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHH--HHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred CCCcEEeccHHHHHHHHHHHHHH--HHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 37899999999965322 12222 222 22334 5677889989999999999999998876 34556666666655
No 42
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=95.67 E-value=0.012 Score=63.33 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=51.1
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHh-hC---CCCceEEEE-eeeEECCCCCcccccCCCccChhhHHHhhChhHHHH
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYL-HGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRF 493 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~-~~---~~Pf~~v~~-hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~ 493 (843)
|-+++...|.||.... .+|-++--+.. .| ..| .-++. +.++.+.+|+|||||.||.|+..| .++.++=
T Consensus 152 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~gldG~KMSKS~~n~I~L~d-----sp~~i~~ 225 (340)
T 2g36_A 152 YKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEP-EAILSRVPKLPGTDGRKMSKSYGNIINLEI-----SEKELEQ 225 (340)
T ss_dssp TTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCC-EEEECCSCCCCCTTSSCCCGGGTCCCBTTC-----CHHHHHH
T ss_pred hCCCEEEcccchHHHHHHHHHHHHHhhhhcccccCCc-hhhhccccccCCCCccccCCCCCCeEeeeC-----CHHHHHH
Confidence 6789999999997632 23333332221 13 345 44444 578888999999999999999888 7788887
Q ss_pred HHHhC
Q 003160 494 TISLG 498 (843)
Q Consensus 494 ~l~~~ 498 (843)
.+.++
T Consensus 226 Ki~~a 230 (340)
T 2g36_A 226 TILRM 230 (340)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 77764
No 43
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.64 E-value=0.0061 Score=66.04 Aligned_cols=72 Identities=18% Similarity=0.060 Sum_probs=38.2
Q ss_pred CCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 421 PTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 421 P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
.+++...|.||....- .|-++ -.+....| -.+.+.++...+|+|||||.||.|+..| ++-.++.++=.+.+.
T Consensus 210 ~~~i~p~G~DQ~~~i~l~rdla--~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQLGNIMSGYEFI--NKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHH--HHHSSCCC--EEEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHHHHHHHHHHH--HHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 8999999999965322 22222 22233344 4567888888999999999999998887 456677777777663
No 44
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.62 E-value=0.0075 Score=66.14 Aligned_cols=80 Identities=18% Similarity=0.052 Sum_probs=49.0
Q ss_pred hhhhhcC---CCcEEEEeehhhhhHHH-HHHHHHhH------------hh--C-CCCceEEEEeeeEECCCCCcccccCC
Q 003160 414 DDFKKFY---PTTMLETGHDILFFWVA-RMVMMGIE------------FT--G-SVPFSHVYLHGLIRDSQGRKMSKTLG 474 (843)
Q Consensus 414 ~~~~~~~---P~d~~~~G~Di~~~W~~-~~~~~~~~------------~~--~-~~Pf~~v~~hg~v~d~~G~KMSKS~G 474 (843)
.|+-.++ ++++...|.||...... +-++--.. +. + ..| ..+.+.++...+|+|||||.|
T Consensus 222 aDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~--~~l~~pll~~ldG~KMSKS~~ 299 (392)
T 1y42_X 222 WDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTALDEC--VGFTVPLLTDSSGAKFGKSAG 299 (392)
T ss_dssp HHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSC--EEEECCCCBCTTCCBTTBCSS
T ss_pred HHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccccCCc--cccccccCcCCchhhccCCCC
Confidence 3444444 79999999999543221 11211100 00 0 123 456788999999999999999
Q ss_pred CccChhhHHHhhChhHHHHHHHh
Q 003160 475 NVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 475 NvI~p~dii~~yGaDalR~~l~~ 497 (843)
|.|+..+ ++-+++.++=++.+
T Consensus 300 naI~L~d--~~tsp~~i~qki~~ 320 (392)
T 1y42_X 300 NAIWLDP--YQTSVFDFYGYFVR 320 (392)
T ss_dssp SBCBSST--TTSCHHHHHHHHHT
T ss_pred CeeeccC--CCCCHHHHHHHHHc
Confidence 9998776 22455555555554
No 45
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=95.59 E-value=0.049 Score=61.42 Aligned_cols=74 Identities=22% Similarity=0.125 Sum_probs=51.6
Q ss_pred cEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 423 TMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 423 d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
+..+-|.|.+..- .+.+.+.-++.-..| .+.-++++++.+|+||||+.|++ ...++.++ |-++++|-|++..+.
T Consensus 220 thvirG~D~~~~t-~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 294 (481)
T 2o5r_A 220 THVIRGDDHLSNT-LRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLGW 294 (481)
T ss_dssp SEEEEEGGGHHHH-HHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSSB
T ss_pred CeEEEChhHHHhH-HHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 4456799987533 333333233322344 44445778899999999999999 78888875 889999999987554
No 46
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=95.39 E-value=0.016 Score=70.46 Aligned_cols=78 Identities=21% Similarity=0.399 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCceeecc--------------ccccCCccCC-CCCeeEEeeccceeEecchHHHHHHHHHHcCCe
Q 003160 253 FEARKKLWSDLEETGLAVKKEP--------------HTLRVPRSQR-GGEVIEPLVSKQWFVTMEPLAEKALHAVEKGEL 317 (843)
Q Consensus 253 ~~ar~~i~~~L~~~g~l~~~~~--------------~~~~~p~~~r-~g~~v~~~~~~QWFl~~~~~~~~~~~~~~~~~~ 317 (843)
.++-..++..|.++|++++.+. .+...+.|+| ||.+++.+..+||||+++++++++++.++..
T Consensus 133 ~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~-- 210 (878)
T 2v0c_A 133 YRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGL-- 210 (878)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhc--
Confidence 4566789999999999986321 1223578999 9999999999999999999999999998653
Q ss_pred eEecchhHHHHHHHhh
Q 003160 318 TIMPERFEKIYNHWLS 333 (843)
Q Consensus 318 ~~~P~~~~~~~~~~l~ 333 (843)
. .|++.++...+|+.
T Consensus 211 ~-~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 211 N-WPEKVKAMQRAWIG 225 (878)
T ss_dssp B-SCHHHHHHHHHHHC
T ss_pred C-CCHHHHHHHHHHhc
Confidence 3 89999999999995
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.34 E-value=0.011 Score=66.97 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=48.7
Q ss_pred EEEEeeeEECCCCCcccccCCC---------------ccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGN---------------VIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA 513 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GN---------------vI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~ 513 (843)
+.+-+|++ +.+|.|||||+|| .++..++.++ |.++|+|.||+..+. ..+..+++..++.
T Consensus 254 ~~~~f~hL-n~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~ 329 (553)
T 1qtq_A 254 RQYEFSRL-NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLES 329 (553)
T ss_dssp EEEEECCC-CBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHH
T ss_pred CeEEEEee-cCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHH
Confidence 56688887 6899999999997 6677888877 999999999998877 5566677777765
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=95.12 E-value=0.0099 Score=63.51 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=49.0
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHh-hC---CCCceEEE--EeeeEECCCCCcccccCCCccChhhHHHhhChhHHH
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVY--LHGLIRDSQGRKMSKTLGNVIDPIDTIKEFGADALR 492 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~-~~---~~Pf~~v~--~hg~v~d~~G~KMSKS~GNvI~p~dii~~yGaDalR 492 (843)
|-+++...|.||.... .+|-++--+.. .| ..| +.++ .+.++.+.+|+|||||.||.|+..| .++.++
T Consensus 138 ~~~~~vpvG~DQ~~hi~l~Rdia~r~n~~~g~~f~~P-~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d-----~p~~i~ 211 (322)
T 3tzl_A 138 FDTRIVPVGKDQIQHVEIARDIALKVNNEWGEIFTLP-EARVNEEVAVVVGTDGAKMSKSYQNTIDIFS-----SEKTLK 211 (322)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCSCCC-EEECCCSSCCCBCTTSSBCCGGGTCCCBSSC-----CHHHHH
T ss_pred hCCcEEEeccchHHHHHHHHHHHHHhcccccCCCCCc-hhhhccccccccCCCCCcCCCCCCCceecCC-----CHHHHH
Confidence 5688999999997533 23333322211 12 245 4555 3678889999999999999998776 566677
Q ss_pred HHHHhC
Q 003160 493 FTISLG 498 (843)
Q Consensus 493 ~~l~~~ 498 (843)
=.+.++
T Consensus 212 ~KI~~a 217 (322)
T 3tzl_A 212 KQISSI 217 (322)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 666654
No 49
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=94.96 E-value=0.02 Score=62.58 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCC-ccChhhHHHhhChhHHHHHHHh
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GN-vI~p~dii~~yGaDalR~~l~~ 497 (843)
|.+++.+.|.||..... ++-++ -.+....| ..+.+.++.+.+|+|||||.|| .|+..|= ++.++=.+.+
T Consensus 177 ~~a~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gldG~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 177 LKVDAQFGGIDQRKIFTFAEKYL--PALGYSKR--VHLMNPMVPGLTGSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCSSCC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred hcCCEEEcChhHHHHHHHHHHHH--HHcCCCCC--EEEecCccCCCCcccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 57889999999976432 22221 12222345 4567889999999999999999 7887763 6777777765
Q ss_pred C
Q 003160 498 G 498 (843)
Q Consensus 498 ~ 498 (843)
+
T Consensus 248 A 248 (372)
T 1n3l_A 248 A 248 (372)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.028 Score=61.89 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCC-CCcccccCCCc-cChhhHHHhhChhHHHHHHH
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-GRKMSKTLGNV-IDPIDTIKEFGADALRFTIS 496 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-G~KMSKS~GNv-I~p~dii~~yGaDalR~~l~ 496 (843)
|.+++.+.|.||..... ++.++ -.+....| ..+.|.++.+.+ |+|||||.||. |+..| .++.+|=-+.
T Consensus 181 ~~~~~v~~G~DQ~~~~~l~rdl~--~r~~~~~p--~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~~i~kKI~ 251 (394)
T 2dlc_X 181 LDVDCQFGGVDQRKIFVLAEENL--PSLGYKKR--AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPKQVKKKIN 251 (394)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHG--GGGTCCCC--EEEEECCCCCCC----------CCSCBTTC-----CHHHHHHHHH
T ss_pred hCCCEEecCccHHHHHHHHHHHH--HHcCCCCC--EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHHHHHHHHH
Confidence 67889999999976432 22222 22222344 456688998899 99999999996 98776 3556666665
Q ss_pred hC
Q 003160 497 LG 498 (843)
Q Consensus 497 ~~ 498 (843)
++
T Consensus 252 ka 253 (394)
T 2dlc_X 252 SA 253 (394)
T ss_dssp HS
T ss_pred Hh
Confidence 53
No 51
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=94.44 E-value=0.024 Score=61.37 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=48.0
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhH-hhC---CCCceEEEE-eeeEECCCCC-cccccCCCccChhhHHHhhChhHHH
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL-HGLIRDSQGR-KMSKTLGNVIDPIDTIKEFGADALR 492 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~-~~~---~~Pf~~v~~-hg~v~d~~G~-KMSKS~GNvI~p~dii~~yGaDalR 492 (843)
|-+++...|.||.... .+|-++--+. ..| ..| .-++. +.++.+.+|+ |||||.||.|+..|- ++.++
T Consensus 161 ~~~~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P-~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d~-----p~~i~ 234 (351)
T 1yi8_B 161 FGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEP-QAQLSRVPRLPGLDGQAKMSKSLGNAIALGDS-----ADEVA 234 (351)
T ss_dssp HTCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCC-EEEECSSCSCCCTTSSSCCCTTTTCCCBTTCC-----HHHHH
T ss_pred cCCCEEEecCCcHHHHHHHHHHHHHHHhhcccccCCC-eeeeecCccccCCCCccccCCCCCCeecCCCC-----HHHHH
Confidence 5688999999997632 2233332211 123 345 44554 5788888997 999999999987763 66666
Q ss_pred HHHHhC
Q 003160 493 FTISLG 498 (843)
Q Consensus 493 ~~l~~~ 498 (843)
=.+.++
T Consensus 235 ~Ki~~a 240 (351)
T 1yi8_B 235 RKVMGM 240 (351)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 666653
No 52
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=94.25 E-value=0.034 Score=59.18 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCC-CcccccCCCccChhhHHHhhChhHHHHHHHhC
Q 003160 420 YPTTMLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQG-RKMSKTLGNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G-~KMSKS~GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
+-+++.+.|.||.... .+. -.+....| .++.+.++.+.+| +|||||.||.|+..| .+|.+|==+.++
T Consensus 162 ~~~~~v~~G~DQ~~~~---~l~--R~i~~~~~--~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~i~~KI~~a 229 (314)
T 2zp1_A 162 LGVDVAVGGMEQRKIH---MLA--RELLPKKV--VCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEEIRAKIKKA 229 (314)
T ss_dssp HTCSEEEEEGGGHHHH---HHH--HHHSSSCC--EEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHHHHHHHHHS
T ss_pred hCCCEEEcChhHHHHH---HHH--HHhcCCCc--EEeeccccccCCcccccCCCCcceecCCC-----CHHHHHHHHHhC
Confidence 3578999999997632 222 22222334 4566788889999 799999999998776 345555555553
No 53
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=94.24 E-value=0.018 Score=61.86 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=48.3
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhH-hhC---CCCceEEEE-e-eeEECCCC-CcccccCCCccChhhHHHhhChhHH
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIE-FTG---SVPFSHVYL-H-GLIRDSQG-RKMSKTLGNVIDPIDTIKEFGADAL 491 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~-~~~---~~Pf~~v~~-h-g~v~d~~G-~KMSKS~GNvI~p~dii~~yGaDal 491 (843)
|-+++...|.||....- +|-++--+. ..| ..| ..++. | .++.+.+| +|||||.||.|+..| .++.+
T Consensus 140 ~~~~lvp~G~DQ~~~i~l~rdla~r~n~~~g~~f~~P-~~~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~i 213 (337)
T 2el7_A 140 YKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEP-QALLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEESI 213 (337)
T ss_dssp TTCCEEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCC-EEECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHHH
T ss_pred hCCcEEEcccchHHHHHHHHHHHHHHHhhcCcccCCC-eeecccccccccCCCCccccCCCCCCeeeCcC-----CHHHH
Confidence 67889999999976432 232332211 113 345 33332 2 68888999 999999999998877 36777
Q ss_pred HHHHHhCC
Q 003160 492 RFTISLGT 499 (843)
Q Consensus 492 R~~l~~~~ 499 (843)
+=.+.++.
T Consensus 214 ~~Ki~~a~ 221 (337)
T 2el7_A 214 WQKIQHLP 221 (337)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhCC
Confidence 77776643
No 54
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=94.01 E-value=0.09 Score=62.49 Aligned_cols=59 Identities=14% Similarity=-0.011 Sum_probs=48.0
Q ss_pred EEEEeeeEECCCCCcccccCCC---------------ccChhhHHHh-hChhHHHHHHHhCCc-ccccccCHHHHHH
Q 003160 454 HVYLHGLIRDSQGRKMSKTLGN---------------VIDPIDTIKE-FGADALRFTISLGTA-GQDLSLSIERLTA 513 (843)
Q Consensus 454 ~v~~hg~v~d~~G~KMSKS~GN---------------vI~p~dii~~-yGaDalR~~l~~~~~-~~D~~f~~~~~~~ 513 (843)
..+-+|++. .+|.|||||+|| .++..++.++ |.++++|.|++..+. ..|..+++..++.
T Consensus 294 ~~~~fahLn-~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~ 369 (851)
T 2hz7_A 294 HQYEFGRRG-LEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYEN 369 (851)
T ss_dssp EEEEECCEE-ETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHH
T ss_pred CceEEEEec-CCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHH
Confidence 556778875 899999999987 4567788876 999999999999888 5666677777765
No 55
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=93.97 E-value=0.18 Score=56.82 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=55.3
Q ss_pred cEEEEeehhhhhHHH-HHHHHHh---HhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHh
Q 003160 423 TMLETGHDILFFWVA-RMVMMGI---EFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISL 497 (843)
Q Consensus 423 d~~~~G~Di~~~W~~-~~~~~~~---~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~ 497 (843)
+..+-|.|.+..-+. ..+.-.+ .+....| .+.-++++++.+|+||||+.|++ +..++.+. |.++++|.||+.
T Consensus 210 thviRG~D~~~~t~~q~~l~~aL~~~g~g~~~P--~~~h~plil~~~g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 210 THVLRGEDLLPSTPRQLALHQALIRIGVAERIP--KFAHLPTVLGEGTKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp CEEEEEGGGGGGHHHHHHHHHHHHHTTSCCCCC--EEEEECCEECSSSSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHT
T ss_pred CEEEEChhhhhccHHHHHHHHHHHhhcCCCCCC--eEEEeeeeECCCCCcccccCCcc-cHHHHHhCCCCHHHHHHHHHH
Confidence 344568888764331 1111122 0012234 55566889999999999999995 67777775 889999999997
Q ss_pred CCc---ccccccCHHHH
Q 003160 498 GTA---GQDLSLSIERL 511 (843)
Q Consensus 498 ~~~---~~D~~f~~~~~ 511 (843)
.+. ++.-.|+.+.+
T Consensus 287 lG~s~~~~~e~~s~~el 303 (498)
T 2ja2_A 287 LGWSIADDHDLFGLDEM 303 (498)
T ss_dssp SSCCSCSSCCCCCHHHH
T ss_pred hCCCCCcccccCCHHHH
Confidence 654 22245676554
No 56
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=93.93 E-value=0.14 Score=57.39 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=54.0
Q ss_pred EEEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc--
Q 003160 424 MLETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA-- 500 (843)
Q Consensus 424 ~~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~-- 500 (843)
..+-|.|.+-.-+. +..+.-++.-..| .+.-++++++.+|+||||+.||. ...++.+. |-++++|-||+..+.
T Consensus 202 hvirG~D~~~~t~~-q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~ 277 (468)
T 1j09_A 202 DVIRAEEWLVSTPI-HVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSM 277 (468)
T ss_dssp EEEEEGGGGGGHHH-HHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCC
T ss_pred eEEEChhhhhhHHH-HHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCC
Confidence 33558888754332 2222222222234 44445788899999999999999 67777765 889999999987544
Q ss_pred ccc-cccCHHHH
Q 003160 501 GQD-LSLSIERL 511 (843)
Q Consensus 501 ~~D-~~f~~~~~ 511 (843)
..+ ..|+.+.+
T Consensus 278 ~~~~~~~~~~el 289 (468)
T 1j09_A 278 PDGREIFTLEEF 289 (468)
T ss_dssp TTCCSCCCHHHH
T ss_pred cccccCCCHHHH
Confidence 222 45665544
No 57
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=93.74 E-value=0.25 Score=55.65 Aligned_cols=82 Identities=23% Similarity=0.119 Sum_probs=53.5
Q ss_pred EEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc--c
Q 003160 425 LETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA--G 501 (843)
Q Consensus 425 ~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~--~ 501 (843)
.+-|.|.+-.=+... .+--++.-..| .+.-++++++.+|+||||+.|+ +...++.+. |-++++|-||+..+. .
T Consensus 215 ViRG~D~l~~tp~q~-~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~ 290 (488)
T 3afh_A 215 VFRGEDHLSNTPKQL-MIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVE 290 (488)
T ss_dssp EEEEGGGGGGHHHHH-HHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCS
T ss_pred EEEchhhhhCHHHHH-HHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 345888775433222 22122222334 4445578999999999999999 477888775 889999999997654 2
Q ss_pred cccccCHHH
Q 003160 502 QDLSLSIER 510 (843)
Q Consensus 502 ~D~~f~~~~ 510 (843)
.+-.|+.+.
T Consensus 291 ~~e~~s~~e 299 (488)
T 3afh_A 291 GDEIFTIEE 299 (488)
T ss_dssp SCSCCCHHH
T ss_pred ccccCCHHH
Confidence 334466554
No 58
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=93.47 E-value=0.044 Score=59.70 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=43.1
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCce-EEEEeeeEECC-CCC-cccccC-CCccChhhHHHhhChhHHHHH
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFS-HVYLHGLIRDS-QGR-KMSKTL-GNVIDPIDTIKEFGADALRFT 494 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~-~v~~hg~v~d~-~G~-KMSKS~-GNvI~p~dii~~yGaDalR~~ 494 (843)
|-+|+...|.||.... .+|-++-.+ +..+ + .++.|.++... +|. |||||. ||.|+..| .++.+|=-
T Consensus 199 l~ad~vpgG~DQ~~~l~l~Rdla~r~---~~~~-~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p~~i~~K 269 (373)
T 3vgj_A 199 LNVDICQLGIDQRKVNMLAREYCDIK---KIKK-KPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SESDVNRK 269 (373)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHHHH---TCSC-CCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CHHHHHHH
T ss_pred cCCcEEEcchhhHHHHHHHHHHHHHh---CCCC-CceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CHHHHHHH
Confidence 4678888999996543 233333222 2221 2 45678888885 895 999999 57887665 34445444
Q ss_pred HHh
Q 003160 495 ISL 497 (843)
Q Consensus 495 l~~ 497 (843)
+.+
T Consensus 270 I~k 272 (373)
T 3vgj_A 270 IKK 272 (373)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 59
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=93.41 E-value=0.036 Score=60.70 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=28.2
Q ss_pred CcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccCCCccChhh
Q 003160 422 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGNVIDPID 481 (843)
Q Consensus 422 ~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GNvI~p~d 481 (843)
+++...|.||.... .+|-++- .+....| .++.+.++...+| .|||||.||.|+..|
T Consensus 225 ~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAP--RLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHH--HHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHHHHHHHHHHHH--HcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 56888999996543 2232222 2233345 4567888888999 799999999997655
No 60
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=93.40 E-value=0.034 Score=64.60 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccc-CcCccccCchhHH-HHHHHHHHHHHHcCceeeCCcc
Q 003160 53 WEWKEKYGGTITSQIKRLGASCD-WTRERFTLDEQLS-RAVVEAFIRLHEKGLIYQGSYM 110 (843)
Q Consensus 53 ~~~~~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~-~~v~~~F~~L~~~GlIyr~~~~ 110 (843)
+++++.+.+.+++.+++||+.+| |.++- .|. ..+..++.+|.++|++|....-
T Consensus 267 ~~~~~~~~~~~~~~~~~L~V~fD~~~~ES-----~~~~~~~~~vi~~L~~kG~~ye~dGa 321 (607)
T 1f7u_A 267 KRFREFSIEKYIDTYARLNIKYDVYSGES-----QVSKESMLKAIDLFKEKGLTHEDKGA 321 (607)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEEGG-----GCCHHHHHHHHHHHHHTTCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeecCcc-----hhhhhHHHHHHHHHHhCCCEEEECCc
Confidence 45578888999999999999998 66631 132 5789999999999999986543
No 61
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=93.24 E-value=0.053 Score=60.17 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=34.1
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhh
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 481 (843)
|-+++...|.||.... +.|-++- .+....| .++.+.++...+| +|||||.|| .|+..|
T Consensus 248 ~~~~lvp~G~DQ~~~i~l~Rdla~--r~~~~~p--~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDPYFRVCRDVAD--KLKYSKP--ALLHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHHHH--HHTSCCC--EEEEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHHHHHHHHHHHH--HhCCCCc--eeeccccccCCCCCccccCCCCCCCeEeccC
Confidence 4467788999996542 2232322 2222456 3577889999999 999999999 887765
No 62
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=93.04 E-value=0.083 Score=57.40 Aligned_cols=70 Identities=23% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCCcEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCC-----------------CCccccc-CCCccChh
Q 003160 420 YPTTMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQ-----------------GRKMSKT-LGNVIDPI 480 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~-----------------G~KMSKS-~GNvI~p~ 480 (843)
|-+++...|.||..... +|-++ -.+....| .++.|.++.+.+ |+||||| .||.|+..
T Consensus 176 ~~~~~v~~G~DQ~~~~~l~rdla--~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~~~~I~L~ 251 (364)
T 2cya_A 176 MDLDIALGGMDQRKAHMLARDVA--EKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVV 251 (364)
T ss_dssp TTCSEEEEEGGGHHHHHHHHHHH--TTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSGGGSCBTT
T ss_pred cCCCEEeccchHHHHHHHHHHHH--HHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCCCCEeecc
Confidence 56889999999965321 12221 12223345 356788888888 7999999 78999887
Q ss_pred hHHHhhChhHHHHHHHhC
Q 003160 481 DTIKEFGADALRFTISLG 498 (843)
Q Consensus 481 dii~~yGaDalR~~l~~~ 498 (843)
|- ++.++=.+.++
T Consensus 252 d~-----p~~i~~Ki~~a 264 (364)
T 2cya_A 252 DS-----DDDIRRKIRKA 264 (364)
T ss_dssp CC-----HHHHHHHHHTS
T ss_pred CC-----HHHHHHHHHhC
Confidence 73 66777666654
No 63
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=92.77 E-value=0.59 Score=38.65 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++++++.|+.+++++++++..++.+|+|+. |+.++++.-++|.+|.+--.--+..+..+..
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~-----~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~ 66 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRD-----AKQTVQKHIDLLHTYNEIRDIALGMIGKVAE 66 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998754 8899999999999988655544444444443
No 64
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=92.53 E-value=0.09 Score=57.43 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=37.5
Q ss_pred CcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhh
Q 003160 422 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 481 (843)
Q Consensus 422 ~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 481 (843)
+++...|.||.... .+|-++- .+....| ..+.+.++...+| .|||||.+| .|...|
T Consensus 208 a~~vpvG~DQ~~hl~l~Rdla~--r~n~~~p--~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D 267 (392)
T 3jxe_A 208 RCLIPAAIDQDPYWRLQRDFAE--SLGYYKT--AALHSKFVPSLTSLSGKMSASKPETAIYLTD 267 (392)
T ss_dssp CEEEEEEGGGHHHHHHHHHHTG--GGTSCCC--EEEEECCCCCSSCSSSCCCTTSGGGCCBTTC
T ss_pred CceeecccchHHHHHHHHHHHH--HcCCCCC--eeeecccccCCCCCccccccCCCCCeeeCCC
Confidence 56778899996533 2232221 2222455 4567889988899 599999999 886554
No 65
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=92.53 E-value=0.087 Score=58.34 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHHh--HhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhh
Q 003160 420 YPTTMLETGHDILFFWVARMVMMGI--EFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~~--~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 481 (843)
|-+++...|.||.... ++..-+ .+....| .++.+.++...+| .|||||.|| .|+..|
T Consensus 255 ~~~~lVpvG~DQ~~~i---~l~Rdla~r~~~~~P--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 255 DIQCLIPCAIDQDPYF---RMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CCEEEEEEEGGGHHHH---HHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CCceEEEeehhhHHHH---HHHHHHHHHhCCCCc--eEeecccccCCCCCccccCCCCCCCeeeccC
Confidence 3345555799996532 222222 2222456 3577889999999 899999999 898765
No 66
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=92.49 E-value=0.077 Score=58.04 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=25.1
Q ss_pred EEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhh
Q 003160 424 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 481 (843)
Q Consensus 424 ~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 481 (843)
+...|.||.... .+|-++ -.+....| .++.|.++...+| .|||||.+| .|+..|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla--~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVA--PRLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHT--GGGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred ecccccchHHHHHHHHHHH--HHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 557899996533 122222 12223344 4667888988899 799999998 787655
No 67
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=92.29 E-value=0.09 Score=57.69 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCC--CcccccC-CCccChhh
Q 003160 421 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQG--RKMSKTL-GNVIDPID 481 (843)
Q Consensus 421 P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~-GNvI~p~d 481 (843)
-+++...|.||.... .+|-++-- +....| .++.+.++...+| .|||||. ||.|+..|
T Consensus 243 ~a~lvpvG~DQ~~~i~l~Rdla~r--~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 243 AMCLVPAAVDQDPFFRLARDKAKA--LGEKKP--SSIYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred CCeEEeeccchHHHHHHHHHHHHH--cCCCCc--eeeccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 466778899997643 23333332 223445 4557889989999 6999999 78997655
No 68
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=92.03 E-value=0.098 Score=56.46 Aligned_cols=68 Identities=19% Similarity=0.045 Sum_probs=41.7
Q ss_pred CCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECC-CC-CcccccC-CCccChhhHHHhhChhHHHHHHH
Q 003160 421 PTTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDS-QG-RKMSKTL-GNVIDPIDTIKEFGADALRFTIS 496 (843)
Q Consensus 421 P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~-~G-~KMSKS~-GNvI~p~dii~~yGaDalR~~l~ 496 (843)
-+|+...|.||.... .+|-++ -.+....| .+..+.++... +| .|||||. ||.|+..| .+|.+|==+.
T Consensus 186 ~~~~~~~G~DQ~~~i~l~Rdia--~r~~~~~p--~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d-----~p~~i~kKI~ 256 (348)
T 2j5b_A 186 GIDICQLGIDQRKVNMLAIEYA--NDRGLKIP--ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD-----TEQEVSEKIS 256 (348)
T ss_dssp CCSEECCBGGGHHHHHHHHHHH--HHTTCCCC--EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC-----CHHHHHHHHH
T ss_pred CCcEEEeccChHHHHHHHHHHH--HHhCCCCc--eeecCccccCCCCcccccccCCCCCeEeecC-----CHHHHHHHHh
Confidence 578888899996532 222222 22222334 45667788877 57 7999999 68897655 3444444444
Q ss_pred h
Q 003160 497 L 497 (843)
Q Consensus 497 ~ 497 (843)
+
T Consensus 257 k 257 (348)
T 2j5b_A 257 R 257 (348)
T ss_dssp H
T ss_pred c
Confidence 4
No 69
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=91.76 E-value=0.13 Score=55.98 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=43.7
Q ss_pred CcEEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCCC-ccccc-CCCccChhhHHHhhChhHHHHHHHh
Q 003160 422 TTMLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR-KMSKT-LGNVIDPIDTIKEFGADALRFTISL 497 (843)
Q Consensus 422 ~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~-KMSKS-~GNvI~p~dii~~yGaDalR~~l~~ 497 (843)
+++...|.||.... .+|-++-- +....| .++.+.++...+|. ||||| .||.|...| .+|.++=-+.+
T Consensus 225 a~~VpvG~DQ~~hl~l~Rdla~r--~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 225 RCLVLDSIKNVQFHSIIDQIATT--LNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHH--HTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHH--cCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 44555599997643 33444332 233455 56678888888995 99999 899997765 44555544544
No 70
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=91.75 E-value=0.12 Score=58.04 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHH--hHhhCCCCceEEEEeeeEECCCC--CcccccCCC-ccChhh
Q 003160 420 YPTTMLETGHDILFFWVARMVMMG--IEFTGSVPFSHVYLHGLIRDSQG--RKMSKTLGN-VIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~--~~~~~~~Pf~~v~~hg~v~d~~G--~KMSKS~GN-vI~p~d 481 (843)
|-+++...|.||.... .+..- -.+....| .++.+.++...+| .|||||.|| .|+..|
T Consensus 302 ~~~~~VpvG~DQ~~~i---~l~Rdla~r~~~~~p--~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYF---RMTRDVAPRIGYPKP--ALLHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp CCEEEEEEEGGGHHHH---HHHHHHGGGGTCCCC--EEEEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred CCceeEeccccHHHHH---HHHHHHHHHhCCCCc--eeeecccccCCCCCccccCCCCCCCceeecC
Confidence 3345555799996532 22222 22222456 3577889999999 899999999 887665
No 71
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=91.69 E-value=0.11 Score=58.37 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred CccccccCCCcccCCCCcCcccccchHHHHH----HHH-HcCCC---Ccc-c--------CHHHH------------HHH
Q 003160 1 MVRYHRMKGRPTLWLPGTDHAGIATQLVVEK----MLA-AEGIK---RVE-L--------SRDEF------------TKR 51 (843)
Q Consensus 1 ~~Ry~rm~G~~v~~~~G~D~~Gl~~e~~vek----~l~-~~g~~---~~~-~--------~~~~f------------~~~ 51 (843)
++|+.||.||+|+-..-....|..+...+.. ... ..|.+ |++ + .++-| .+.
T Consensus 59 ~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~ 138 (464)
T 3fnr_A 59 LTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPS 138 (464)
T ss_dssp HHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHH
T ss_pred HHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHH
Confidence 4799999999999987777777765433221 111 12322 221 0 11111 123
Q ss_pred HHHHH-HHHHHHHHHHHHHhccccc-CcCccccCchhHHHHHHHHHHHHHHcCceeeCCc
Q 003160 52 VWEWK-EKYGGTITSQIKRLGASCD-WTRERFTLDEQLSRAVVEAFIRLHEKGLIYQGSY 109 (843)
Q Consensus 52 ~~~~~-~~~~~~~~~q~~~lG~~~D-w~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~ 109 (843)
.|+|. +...+.+++.+++||+.+| |..|-.. |. .+..+..+|.++|++|....
T Consensus 139 ~~~~~~~~~l~~~~~~~~~l~V~fD~~~~Ess~----~~-~~~~vv~~L~~~g~~~e~dG 193 (464)
T 3fnr_A 139 LADWAKDKMLVLIKQNLEQAKIKIDSYVSERSY----YD-ALNATLESLKEHKGIYEQEG 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCEEEGGGG----ST-THHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceeecCHHHH----HH-HHHHHHHHHHHCCCEEEeCC
Confidence 55664 4456788999999999999 7554111 22 78899999999999998643
No 72
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=91.48 E-value=0.093 Score=56.61 Aligned_cols=73 Identities=25% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhH-hhC---CCCceEEEE--eeeEECCCC--CcccccCCC---ccChhhHHHhhC
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL--HGLIRDSQG--RKMSKTLGN---VIDPIDTIKEFG 487 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~-~~~---~~Pf~~v~~--hg~v~d~~G--~KMSKS~GN---vI~p~dii~~yG 487 (843)
|-+|+...|.||.... ++|-++-.+. ..| ..| .-++. +.++.+.+| +|||||.|| .|+..| .
T Consensus 146 ~~a~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P-~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D-----~ 219 (348)
T 2yy5_A 146 YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLP-QFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD-----P 219 (348)
T ss_dssp TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCC-EEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC-----C
T ss_pred hCccEEEecccHHHHHHHHHHHHHHhhhhcccccCCC-eeecccccccccCCCCcchhcCCCCCCCCceEeecC-----C
Confidence 5688999999997632 2333332221 113 245 33333 577888888 999999999 897766 3
Q ss_pred hhHHHHHHHhC
Q 003160 488 ADALRFTISLG 498 (843)
Q Consensus 488 aDalR~~l~~~ 498 (843)
+|.+|==+.++
T Consensus 220 ~~~i~~KI~~a 230 (348)
T 2yy5_A 220 KEVVVKKIRQA 230 (348)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 45555555543
No 73
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=91.36 E-value=0.12 Score=55.29 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhH-hhC---CCCceEEEE--eeeEECCCC--CcccccCCC-c--cChhhHHHhhC
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIE-FTG---SVPFSHVYL--HGLIRDSQG--RKMSKTLGN-V--IDPIDTIKEFG 487 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~-~~~---~~Pf~~v~~--hg~v~d~~G--~KMSKS~GN-v--I~p~dii~~yG 487 (843)
|-+++...|.||.... .+|-++-.+. ..| ..| .-++. +.++.+.+| +|||||.|| . |+..| .
T Consensus 136 ~~~~~vpvG~DQ~~~iel~Rdia~r~n~~yg~~f~~P-~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d-----~ 209 (328)
T 1i6k_A 136 YNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIP-EARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLD-----D 209 (328)
T ss_dssp TTCSEEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCC-EEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTC-----C
T ss_pred hCCCEEecccchHHHHHHHHHHHHHhCcccccccCCC-eeeeccccccccCCCCCccCCCCCCCCcCceeeecC-----C
Confidence 6788999999997632 2232322211 111 245 34443 577888889 999999999 6 87655 3
Q ss_pred hhHHHHHHHhC
Q 003160 488 ADALRFTISLG 498 (843)
Q Consensus 488 aDalR~~l~~~ 498 (843)
+|.++==+.++
T Consensus 210 ~~~i~~KI~~a 220 (328)
T 1i6k_A 210 AKTIEKKIKSA 220 (328)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 44455445543
No 74
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=90.18 E-value=0.19 Score=57.98 Aligned_cols=71 Identities=23% Similarity=0.067 Sum_probs=48.8
Q ss_pred EEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 426 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 426 ~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
+-|.|.+..=+. .+.+--++.-..| .+.-++++++.+|+||||+.|+ +...++.+. |-++++|-||+..+.
T Consensus 320 irG~D~~~~t~~-q~~l~~alg~~~P--~~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 320 FRGEDHLSNTPK-QLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp CEEGGGGGGHHH-HHHHHTTTTCCCC--BCCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred EEchhhHhCHHH-HHHHHHHhCCCCC--eEEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 458888764332 2222222222234 4445677889999999999999 578888775 889999999997654
No 75
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=90.05 E-value=0.18 Score=59.24 Aligned_cols=58 Identities=24% Similarity=0.167 Sum_probs=37.2
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhhCCCCce-EEEEeeeEECC-CCC-cccccCC-CccChhh
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFTGSVPFS-HVYLHGLIRDS-QGR-KMSKTLG-NVIDPID 481 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~-~v~~hg~v~d~-~G~-KMSKS~G-NvI~p~d 481 (843)
|-+|+...|.||.... .+|-++- .+ +..+ + .++.+.++.+. +|. |||||.| |.|+..|
T Consensus 182 ~~ad~vpvG~DQ~~~l~l~Rdla~--r~-n~~~-~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D 244 (690)
T 3p0j_A 182 LKADICQLGLDQRKVNMLAREYCD--LI-GRKL-KPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 244 (690)
T ss_dssp TTCSEECCBGGGHHHHHHHHHHHH--HT-TCCC-CCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTC
T ss_pred hCCCEEeccccHHHHHHHHHHHHH--Hh-CCCC-CceEeecCeeecCCCCCcCCCCCCCCCeeeccC
Confidence 4678888999996532 2222222 22 2221 2 45678888887 884 9999998 6786543
No 76
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=89.78 E-value=0.28 Score=53.36 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCcEEEEeehhhhhHHHHHHHHHhHh-hCC----------CCceEEEEeeeEECCCC------------------Cccc
Q 003160 420 YPTTMLETGHDILFFWVARMVMMGIEF-TGS----------VPFSHVYLHGLIRDSQG------------------RKMS 470 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W~~~~~~~~~~~-~~~----------~Pf~~v~~hg~v~d~~G------------------~KMS 470 (843)
|-+|+...|.||... .+++.-++- .+. .| .++.|.++...+| +|||
T Consensus 179 ~~~~~vp~G~DQ~~~---i~l~rdla~r~n~~~~~~~g~~~~~--~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~~KMS 253 (375)
T 2cyc_A 179 QGVTIAHAGMDQRKA---HVIAIEVAQKLRYHPIVHEGEKLKP--VAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMS 253 (375)
T ss_dssp TTCSEEEEEGGGHHH---HHHHHHHGGGCSSSCEEETTEEECC--EEEEECCCBCSSCCSSSSCCSHHHHHHHHHHHBGG
T ss_pred hCCCeecccchHHHH---HHHHHHHHHHhCCcccccccccCcc--EEeccccccCCCCcccccccchhhhhhhhhhhccc
Confidence 568899999999643 222222221 122 33 3456788888888 8999
Q ss_pred ccC-CCccChhhHHHhhChhHHHHHHHhC
Q 003160 471 KTL-GNVIDPIDTIKEFGADALRFTISLG 498 (843)
Q Consensus 471 KS~-GNvI~p~dii~~yGaDalR~~l~~~ 498 (843)
||. +|.|+..|- ++.+|=.+.++
T Consensus 254 KS~~~~~I~L~d~-----p~~i~~KI~~A 277 (375)
T 2cyc_A 254 KSKPYSAVFIHDS-----PEEIRQKLRKA 277 (375)
T ss_dssp GSCGGGSCBTTCC-----HHHHHHHHHHS
T ss_pred CCCCCCeeccCCC-----HHHHHHHHHHh
Confidence 999 788987763 66666666653
No 77
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=87.56 E-value=0.46 Score=49.92 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=49.7
Q ss_pred CCCcCcccccchHHHHHHH--HHcCC----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC-ccccCchhH
Q 003160 15 LPGTDHAGIATQLVVEKML--AAEGI----KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR-ERFTLDEQL 87 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~g~----~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r-~~~T~d~~~ 87 (843)
|+|.=|.|=.-- .+-+.+ +..|- ..+++..+. -...+.+.|.++|+.||+..| . .++.++ +
T Consensus 14 PtG~LHiG~~rt-al~n~l~Ar~~~g~~ilRieDtD~~R-------~~~~~~~~I~~dL~~LGl~~D--~~~~~qSe--r 81 (298)
T 1nzj_A 14 PSGELHFGSLIA-ALGSYLQARARQGRWLVRIEDIDPPR-------EVPGAAETILRQLEHYGLHWD--GDVLWQSQ--R 81 (298)
T ss_dssp TTSCCCHHHHHH-HHHHHHHHHHTTCEEEEEECCSCGGG-------SCTTHHHHHHHHHHHTTCCCS--SCCEEGGG--C
T ss_pred CCCCccHHHHHH-HHHHHHHHHhcCCeEEEEEecCCchh-------hHHHHHHHHHHHHHHcCCCCC--CCCeeeeC--C
Confidence 568888887632 233333 33332 122332221 125678899999999996544 3 333333 4
Q ss_pred HHHHHHHHHHHHHcCceee
Q 003160 88 SRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 88 ~~~v~~~F~~L~~~GlIyr 106 (843)
....+.+..+|.++|++|.
T Consensus 82 ~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 82 HDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCccc
Confidence 5677888899999999996
No 78
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=87.22 E-value=1.5 Score=49.04 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=53.8
Q ss_pred EEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc--cc
Q 003160 426 ETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA--GQ 502 (843)
Q Consensus 426 ~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~--~~ 502 (843)
+=|.|.+..=+. .+.+--++.-..| ...-++++++.+|+||||+.|. ++..++.+. |.+++++=||+..+. +.
T Consensus 225 iRG~D~l~~tpr-q~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~ 300 (490)
T 4g6z_A 225 IRGDDHVNNTPR-QINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGD 300 (490)
T ss_dssp EEEGGGGGGHHH-HHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTT
T ss_pred EeccccccChHH-HHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCC
Confidence 447777653222 2222122222344 5555678999999999999986 567777765 899999999998665 33
Q ss_pred ccccCHHHHH
Q 003160 503 DLSLSIERLT 512 (843)
Q Consensus 503 D~~f~~~~~~ 512 (843)
.--|+.+.+.
T Consensus 301 ~e~~s~~eli 310 (490)
T 4g6z_A 301 AEIFTREQFV 310 (490)
T ss_dssp CCCCCHHHHH
T ss_pred ccccCHHHHH
Confidence 3346766554
No 79
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=85.88 E-value=0.36 Score=53.45 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=34.3
Q ss_pred EEEEeehhhhhH-HHHHHHHHhHhhCCCCceEEEEeeeEECCCCC--cccccCCC-ccChhh
Q 003160 424 MLETGHDILFFW-VARMVMMGIEFTGSVPFSHVYLHGLIRDSQGR--KMSKTLGN-VIDPID 481 (843)
Q Consensus 424 ~~~~G~Di~~~W-~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~--KMSKS~GN-vI~p~d 481 (843)
+...|.||.+.. ++|-++.. +....| .++.|.++...+|. |||||.+| .|...|
T Consensus 290 ~VPvG~DQ~~hlel~Rdia~r--fn~~~p--~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQDPYFRLARDLAPR--MGHPKN--AYLLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTHHHHHHHHHHTTT--TTSCCC--EEEEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchHHHHHHHHHHHHH--hCCCCC--eeecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 445699998643 33433322 212234 46678888888886 99999998 675433
No 80
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=85.50 E-value=0.2 Score=53.77 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=44.0
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHh-hCC------CCceEEEE--eeeEECC-CC-CcccccC---CCccChhhHHH
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEF-TGS------VPFSHVYL--HGLIRDS-QG-RKMSKTL---GNVIDPIDTIK 484 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~-~~~------~Pf~~v~~--hg~v~d~-~G-~KMSKS~---GNvI~p~dii~ 484 (843)
|-+|+...|.||.... ++|-++--+.. .|. .| .-++. +.++... +| +|||||. ||.|...|
T Consensus 142 ~~ad~vpvG~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p-~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D--- 217 (341)
T 3sz3_A 142 YGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIP-EPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLE--- 217 (341)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCC-EECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTC---
T ss_pred cCCCEEEeccchHHHHHHHHHHHHHhchhccCCCcccccC-hhhhccCcccccCCCCCCCccCCCCCCCCCeeecCC---
Confidence 4578888999998643 45555543321 231 23 23332 3456555 57 6999999 89997665
Q ss_pred hhChhHHHHHHHhC
Q 003160 485 EFGADALRFTISLG 498 (843)
Q Consensus 485 ~yGaDalR~~l~~~ 498 (843)
.+|.+|==+.++
T Consensus 218 --~p~~i~kKI~~a 229 (341)
T 3sz3_A 218 --DPKSIIKKINKA 229 (341)
T ss_dssp --CHHHHHHHHHTC
T ss_pred --CHHHHHHHhhhc
Confidence 345555555553
No 81
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=84.86 E-value=0.51 Score=50.57 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=41.6
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHh-hC---CCCceEEEEe---eeEECC-CC-CcccccCC---CccChhhHHHhh
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEF-TG---SVPFSHVYLH---GLIRDS-QG-RKMSKTLG---NVIDPIDTIKEF 486 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~-~~---~~Pf~~v~~h---g~v~d~-~G-~KMSKS~G---NvI~p~dii~~y 486 (843)
|-+|+...|.||.... ++|-++--+.. .| ..| ..+++ .++... +| +|||||.+ |.|...|
T Consensus 151 ~~ad~vpvG~DQ~~hleltRdia~rfn~~yg~~f~~p--~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D----- 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQHLELSRDIASRFNNLYGDIFKIP--EPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE----- 223 (346)
T ss_dssp TTCSEECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCC--EECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS-----
T ss_pred hCceEEEeccchHHHHHHHHHHHHHhccccCCccccc--chhccCCcccCccCCCCccccCCCCCCCCceecCCC-----
Confidence 4578888999998643 45555443321 12 123 33333 345455 67 59999997 6887655
Q ss_pred ChhHHHHHHHh
Q 003160 487 GADALRFTISL 497 (843)
Q Consensus 487 GaDalR~~l~~ 497 (843)
.+|.+|==+.+
T Consensus 224 ~p~~i~kKI~k 234 (346)
T 3n9i_A 224 DPKSVVKKIKR 234 (346)
T ss_dssp CHHHHHHHHHT
T ss_pred CHHHHHHHHHh
Confidence 34445544444
No 82
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=83.37 E-value=3.1 Score=35.40 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
..+++|++++...++++.-.++||.. +.=..+-|.+|- ++.+.-.+.++.++..++..|+..
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999977 333467787764 333444455555555555555543
No 83
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=83.10 E-value=5.5 Score=34.13 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHhHh----cCcch--hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDG-------LVARL----SSSKF--VEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~-------~~~kl----~n~~f--~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.-+.+|++++..++++|++ +.+.. +||.| .+.+ +.-+.+...++..++.++.+++..|+++..
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455566666555555544 44443 46888 3333 445555666777777777777777777654
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=80.88 E-value=2.7 Score=35.98 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC----cchh---------ccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS----SKFV---------EKAPEDVV-RGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n----~~f~---------~kap~~vv-~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
++.++++.|+.+.++|.++++.++.+|.+ -.|- .+-|.... ++.++.++.++++++++...+..|.
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677888888888888888888888877 4552 23455444 3456777888888888887776554
No 85
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=80.66 E-value=1.5 Score=47.47 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=37.0
Q ss_pred CcEEEEeehhhhh-HHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCC-ccChhh
Q 003160 422 TTMLETGHDILFF-WVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGN-VIDPID 481 (843)
Q Consensus 422 ~d~~~~G~Di~~~-W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GN-vI~p~d 481 (843)
+.+.-.|.||... =++|-++.-+.-.-..|......|.++-..+|+|||||.+| .|...|
T Consensus 209 a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 209 HVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred ceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccCC
Confidence 4466679999863 34555543322111123235677788878899999999955 665443
No 86
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=78.83 E-value=5.8 Score=32.12 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+++|++++...++++.-.+.||.. +.=..+-|.+|- ..-+.-...++.+|..++..|+..
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888777777766 233367777664 334444455555555555555543
No 87
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=78.34 E-value=1.2 Score=48.36 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=41.5
Q ss_pred CCCcEEEEeehhhhhH-HHHHHHHHhHhh-CCCCc--eEEEEe---eeEECC-CC-CcccccC---CCccChhhHHHhhC
Q 003160 420 YPTTMLETGHDILFFW-VARMVMMGIEFT-GSVPF--SHVYLH---GLIRDS-QG-RKMSKTL---GNVIDPIDTIKEFG 487 (843)
Q Consensus 420 ~P~d~~~~G~Di~~~W-~~~~~~~~~~~~-~~~Pf--~~v~~h---g~v~d~-~G-~KMSKS~---GNvI~p~dii~~yG 487 (843)
|-+|+...|.||.... ++|-++--+... +. +| ..-+++ ..+... +| +|||||. ||.|...| .
T Consensus 170 ~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~-~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D-----~ 243 (388)
T 3prh_A 170 YGTDLVPPGEDQKQHLELTRNLAERFNKKYND-IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLD-----E 243 (388)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHHHHHHHTCS-CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTC-----C
T ss_pred hCCCEEEechhHHHHHHHHHHHHHHhCcccCC-CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCC-----C
Confidence 5688889999997633 445554433221 21 12 122232 233444 44 7999999 99997665 3
Q ss_pred hhHHHHHHHhC
Q 003160 488 ADALRFTISLG 498 (843)
Q Consensus 488 aDalR~~l~~~ 498 (843)
+|.+|==+.++
T Consensus 244 p~~I~kKI~ka 254 (388)
T 3prh_A 244 PKQLEKKIKSA 254 (388)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 45555445543
No 88
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=76.56 E-value=4.4 Score=44.82 Aligned_cols=60 Identities=8% Similarity=0.305 Sum_probs=49.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+|+++-++.|+++++++++++++++++|+ +-|.. ++.+.|+.++++++++.++.+...+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~ 302 (426)
T 1lrz_A 243 INFDEYIKELNEERDILNKDLNKALKDIE------KRPEN--KKAHNKRDNLQQQLDANEQKIEEGKR 302 (426)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHhh------hCccc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999993 33332 56678888888888888888777653
No 89
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=74.72 E-value=7.1 Score=33.68 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
+++|++++...++++.-.+.||.. +.=+.+-|.+|- ..-+.-.+.++.+|..++..|+..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655 223356666653 334444455555555555555543
No 90
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=73.28 E-value=8.5 Score=32.35 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC-cchhccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSS-SKFVEKAPEDVV----RGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~kap~~vv----~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
+++|++++...++++.-.+.||.. +.=+.+-|.+|- ..-+.-...++.+|..++..|+..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777766666665 222356676654 333444455555555555555443
No 91
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=72.05 E-value=1.6 Score=26.52 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGL 793 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~ 793 (843)
+++...||+|+..|++.+++++
T Consensus 6 ldanvkrlekevgklegevarl 27 (28)
T 4dac_A 6 LDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccHHHHHHHHhhhhhhhhhc
Confidence 5677888999999888887654
No 92
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=64.86 E-value=34 Score=29.75 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhh
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRST 838 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~~ 838 (843)
...-+..++.-+-.+++.|.++.|-.+.+++-.++.++++.+++.-| +.++.+++.|++.
T Consensus 7 ~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~ 74 (113)
T 3lof_A 7 RVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQV 74 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHH
Confidence 33445677777888888998888999999999888888888776543 4556666666653
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.30 E-value=9.4 Score=34.92 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.....+...|+.+++.+.+++..+...|..-.- ..+.-++++.++++++..++..+..|..
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~-------k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQI-------KAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665544222 3344445555555555555555555543
No 94
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.22 E-value=12 Score=34.13 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=35.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+++..|.-+++.+.+.++++++.+.+.+.+= .+-....+.++.+++.+++++++.+..|+.
T Consensus 64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~l-------K~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 64 LNIADDYFKAKKMADSLSLDIENKDKEIYDL-------KHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777777776654431 112334445555555555555555555543
No 95
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=60.98 E-value=0.32 Score=36.83 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
|++.|+|+++.++++++.-.-.-.-++--+.||----+.-++||++++=++..+++.=++|+
T Consensus 14 elqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlk 75 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLK 75 (80)
T ss_dssp TTHHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566777777777766655555556777778766666677888888877777665444443
No 96
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=58.43 E-value=47 Score=29.43 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
++.|+++++.++.+++.++.-+++-.=...+-+.+.+..+.+++.-++++++.++.|..
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld~ 121 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKK 121 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999999998888733355666678888899999999999988887754
No 97
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=56.85 E-value=41 Score=29.82 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcC------cchhccC---C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSS------SKFVEKA---P----EDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n------~~f~~ka---p----~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
...|+++++.+++++.++++.+.. ++|...+ | -++-+.+-++|++++.++..++..++.+.
T Consensus 8 ~~~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le 81 (125)
T 2pms_C 8 EVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLE 81 (125)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445666677777777777666654 3343331 1 11333444455566666666666555554
No 98
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=56.03 E-value=46 Score=28.54 Aligned_cols=61 Identities=8% Similarity=0.102 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
...+.+.+++..++.++.-|++++--+.| +|+.....-..|+.+|+.+|.+++..++.++.
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~------~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVRE------IPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTT------SCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888888887766555 48888999999999999999999998887653
No 99
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=55.25 E-value=22 Score=30.92 Aligned_cols=78 Identities=14% Similarity=0.212 Sum_probs=51.3
Q ss_pred eEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 760 LEAYLPLADMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 760 ~~~~~~l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
.++.+++.... +..|++||.+.-+.+-|--+.....|..+ +++-=+++..+-..++.+.+.+...-.+.++.+.+.+
T Consensus 26 ~r~~~~~~sDP-L~~ELeRLr~~~d~~~K~HE~kklqLkse--~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 26 PQIPFPVFNDP-FLHELEKLRRESENSKKTFEEKKSILKAE--LERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp -------CCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655543 67899999999888887766665555554 3444566667777778888888888888888887755
Q ss_pred c
Q 003160 840 M 840 (843)
Q Consensus 840 ~ 840 (843)
.
T Consensus 103 ~ 103 (115)
T 3vem_A 103 I 103 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=53.37 E-value=33 Score=30.92 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhc
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVE 804 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~ 804 (843)
.++.+++-++|.+++.++..+++.+.++.|+.
T Consensus 48 ~~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~ 79 (136)
T 4adz_A 48 HKQKAEHLKRLRRIEGQIRGLQRMVDEDVYCI 79 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 46789999999999999999999999998873
No 101
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=52.74 E-value=27 Score=39.43 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=55.7
Q ss_pred cEEEEeehhhhhHH-HHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCccChhhHHHh-hChhHHHHHHHhCCc
Q 003160 423 TMLETGHDILFFWV-ARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNVIDPIDTIKE-FGADALRFTISLGTA 500 (843)
Q Consensus 423 d~~~~G~Di~~~W~-~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNvI~p~dii~~-yGaDalR~~l~~~~~ 500 (843)
+-.+=|.|.+-.=+ +.++.-.+. -..| ...-|+++++.+|+|+||+.|.. ...+..+. |=++|+.=||+..+.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg--~~~P--~y~H~pli~~~~g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLGw 305 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFK--WKPP--IYCHLPMVMGNDGQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLLGW 305 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHT--CCCC--EEEEECCCBCTTSSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSSB
T ss_pred ceeccccccccccHHHHHHHHHcC--CCCC--eEEecchhccccccccCcccccc-cHHHHHHcCCChHHHHHHHHHhCC
Confidence 34455778765322 112222222 1344 66778899999999999998865 56676665 889999999987655
Q ss_pred --cc-ccccCHHHHH
Q 003160 501 --GQ-DLSLSIERLT 512 (843)
Q Consensus 501 --~~-D~~f~~~~~~ 512 (843)
+. .--|+.+.+.
T Consensus 306 s~~~~~Eifs~~eli 320 (512)
T 4gri_A 306 SYDDKREFFSKNDLE 320 (512)
T ss_dssp CSSSSCCCCCHHHHH
T ss_pred CCcccchhhhHHHHH
Confidence 33 3457877664
No 102
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=51.35 E-value=10 Score=31.83 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 778 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 778 rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
+.+++++.+..+|++++.+++.=.=.- |.+++-...-.+++++.++++.++..|..+
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~l-adp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQV-ADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888776632221 223333345567777777777777777654
No 103
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=50.83 E-value=52 Score=28.94 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhh
Q 003160 782 RLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRS 837 (843)
Q Consensus 782 ~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~ 837 (843)
.+..++.-+-.+++.|..+.|-.+.+++-.++.++++.++++-| +.++.+++.|++
T Consensus 19 arN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~ 82 (120)
T 2p32_A 19 SHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEG 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 35666777778888887777888889888888888777776443 345566666655
No 104
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=50.68 E-value=50 Score=27.90 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcc-hh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSK-FV 803 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~-f~ 803 (843)
.++..++-++|.+++.++..+++.+.++. |+
T Consensus 10 ~~~k~~~l~RLkRieGQv~gI~rMiEe~~~~C 41 (94)
T 3aai_A 10 PKVREEARRRLLSAKGHLEGILRMLEDEKVYC 41 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccH
Confidence 35678899999999999999999999998 87
No 105
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.81 E-value=25 Score=24.74 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 003160 775 EVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~k 796 (843)
.+.|+.++++|.+++|+.+++|
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 106
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.29 E-value=51 Score=28.69 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=21.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
.|++.-+..|+++++.++++++++++++
T Consensus 66 ~~~~ea~~~L~~~~e~ie~~i~~le~~~ 93 (117)
T 2zqm_A 66 TTKDKAVAELKEKIETLEVRLNALERQE 93 (117)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777888888888888888777643
No 107
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=48.16 E-value=22 Score=24.98 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
++|+++.++++..+++.+..++.
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 108
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.01 E-value=1.5e+02 Score=26.35 Aligned_cols=46 Identities=4% Similarity=0.119 Sum_probs=32.2
Q ss_pred ceEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHhH
Q 003160 751 SVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVAR 796 (843)
Q Consensus 751 ~~~~~~~~~~~~~~~l~~~----id~~~e~~rl~k~~~~~~~~~~~~~~k 796 (843)
++...+.+.-.|++.++.. .+.+.-++-++++++.+++.++.+++.
T Consensus 61 yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~ 110 (133)
T 1fxk_C 61 FIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGEN 110 (133)
T ss_dssp EEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555677766642 367777888999999999998888773
No 109
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=47.93 E-value=35 Score=29.56 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhh
Q 003160 783 LSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI--------NLTKNRLAFLRS 837 (843)
Q Consensus 783 ~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l--------~~~~~~l~~l~~ 837 (843)
+..++.-+-.+++.|.++.|-.+.+++-.++.++++.++++-| +.++.+++.|.+
T Consensus 6 rN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~ 68 (113)
T 1ud0_A 6 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEK 68 (113)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHH
Confidence 4566677777888887666777888887777777777666443 334455555544
No 110
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.79 E-value=1.7e+02 Score=26.79 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=32.9
Q ss_pred ceEEEecCCeEEEecCCCc----cChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 751 SVHLVASEGLEAYLPLADM----VDISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 751 ~~~~~~~~~~~~~~~l~~~----id~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
++...+.+.-.|++++... .+.+.-++-++++++.+++.++++++
T Consensus 71 yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~ 119 (151)
T 2zdi_C 71 FLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQG 119 (151)
T ss_dssp EEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555677776633 37777788899999999999988877
No 111
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=46.78 E-value=79 Score=26.98 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.+.|+..|++++..++.++++++..|..- ....+.......+.+++.+.+...+.-|
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-------~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKS-------EDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777666655421 1223333444555666666666655444
No 112
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=46.68 E-value=18 Score=37.67 Aligned_cols=49 Identities=20% Similarity=0.114 Sum_probs=18.3
Q ss_pred EEEeehhhhhHHHHHHHHHhHhhCCCCceEEEEeeeEECCCCCcccccCCCc
Q 003160 425 LETGHDILFFWVARMVMMGIEFTGSVPFSHVYLHGLIRDSQGRKMSKTLGNV 476 (843)
Q Consensus 425 ~~~G~Di~~~W~~~~~~~~~~~~~~~Pf~~v~~hg~v~d~~G~KMSKS~GNv 476 (843)
.+-|.|.+-.=+... .+--+ .|. |.-.+.-++++++.+|+|||||.||+
T Consensus 188 vIrG~D~l~~t~~q~-~l~~a-lG~-~~p~~~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 188 IVRGADLIEPTVRQI-SLYQL-FGW-KVPDYIHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp EEEEGGGHHHHHHHH-HHHHH-HTC-CCCEEEEECBCCC-------------
T ss_pred EEeCccccccHHHHH-HHHHH-cCC-CCCeEEEeeeeECCCCCcccccCCcc
Confidence 334888874333222 21112 232 22466777888899999999999998
No 113
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.57 E-value=91 Score=26.37 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
...++.+|+.++.....++.++...| ..++.+-.+.+.+..+++..|++|.
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l--------------~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDI--------------AKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777777777777776644 3444444555555555555555544
No 114
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=46.50 E-value=50 Score=29.15 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFV 803 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~ 803 (843)
.+.+++-++|.+++.++..+++.+.++.|+
T Consensus 7 ~~kk~ll~RLkRIeGQvrGI~rMIEedr~C 36 (119)
T 2hh7_A 7 AKKRAALNRLKTVRGHLDGIVRMLESDAYC 36 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 467889999999999999999999999998
No 115
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=45.51 E-value=40 Score=21.00 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003160 816 EKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 816 ~kl~~~~~~l~~~~~~l~~l 835 (843)
+|-+.++++++.+++.|+.|
T Consensus 8 kkcaalesklqalekkleal 27 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444
No 116
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.38 E-value=34 Score=31.64 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhHhcC--------cchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 780 SKRLSKMQSEYDGLVARLSS--------SKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 780 ~k~~~~~~~~~~~~~~kl~n--------~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
++++.++++|++.+..-|=+ ......+-+.-+++-++++.+.+..+..++..|..|+.++
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877665533 2222222233334445667777777778888888887754
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.27 E-value=53 Score=35.91 Aligned_cols=64 Identities=22% Similarity=0.326 Sum_probs=41.8
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 768 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 768 ~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+.++++...++.+++.++.+.+.+.+.+.. ++.+ -.++.+++..++.++++.+++.+.++.+
T Consensus 29 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-----~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPK-----APPE-EKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-----SCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999876 2222 2333444455555555555555544443
No 118
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.16 E-value=33 Score=42.51 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 812 RGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 812 ~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
+.-++|++.++++.++++.++.+|.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777766666653
No 119
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.54 E-value=95 Score=26.73 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 809 DVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 809 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++++..+.++.+++.++..++..++.+..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~ 92 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777776664
No 120
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.41 E-value=94 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.335 Sum_probs=32.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHH
Q 003160 769 MVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINL 827 (843)
Q Consensus 769 ~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~ 827 (843)
..|++..+.||+.-++.+|...+|+-.-... .+.+-+.++..++.++..
T Consensus 2 ~~dlEEKv~~LE~sld~LQTrfARLLaEy~s----------sQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 2 AMGLEEKVTRMESSVDLLQTRFARILAEYES----------MQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcc
Confidence 3577777888888888888888887664433 455566666666665554
No 121
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=41.49 E-value=62 Score=27.39 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhccC--CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA--PEDVVRGVQEKAAEAEEKINL-TKNRLAFLRS 837 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~ka--p~~vv~~~~~kl~~~~~~l~~-~~~~l~~l~~ 837 (843)
-+...+..++.+..-|+.++--+. .+ |+.....-..|+.+|+.++.+ ++..++.|..
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~------~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVN------NSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555555555555554443 45 999999999999999999999 9999887753
No 122
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=41.06 E-value=1e+02 Score=26.55 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhcc-C-CHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVEK-A-PEDVVRGVQEKAAEAEEKIN----LTKNRLAFLRSTV 839 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~k-a-p~~vv~~~~~kl~~~~~~l~----~~~~~l~~l~~~~ 839 (843)
-..||-|+..-+++|++.-+.++.. |.+. + .+..+.+.++=|.+.+.-+- +|++++..|..++
T Consensus 12 ~vkRL~KE~~~Y~kE~~~q~~riek--~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 12 ALKRLTKEEGYYQQELKDQEAHVAK--LKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678999999888888888877766 3322 3 57778887777777775443 4455555555544
No 123
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=40.58 E-value=1.3e+02 Score=25.68 Aligned_cols=55 Identities=9% Similarity=0.104 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 832 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 832 (843)
..+.+..++..++.++.-|++++--.. .+|+.....-..|+.+|+.+|.+++..+
T Consensus 47 rk~~i~~ie~~ldEA~eLl~qMelE~r------~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 47 KKKLVRDFDEKQQEANETLAEMEEELR------YAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466677777777777777655544 4589999999999999999999988765
No 124
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=39.09 E-value=63 Score=28.14 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
..+|+++|..+|++++-.++.+.. ....+++.+-.+..+.+.+++++++.
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~---------rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSL---------VEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCT---------TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777766666544 33445555555555555555555544
No 125
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=38.96 E-value=1.4e+02 Score=26.20 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhc-cCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPEDVVRGVQEKAAEAEEKIN----LTKNRLAFLRST 838 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~-kap~~vv~~~~~kl~~~~~~l~----~~~~~l~~l~~~ 838 (843)
-+.||-|+..-+++|+..-+.++.. +.+ .+.+..+.+.++=|.+.+.-+- +|.+++..|+++
T Consensus 16 ~vkRL~KE~~~Y~kE~~~q~~kiek--mk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~ 82 (116)
T 3mxz_A 16 TCKRIVKELHSYEKEVEREAAKTAD--MKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKST 82 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4678888888888888877777643 322 3566777777777766664443 334444455443
No 126
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.95 E-value=92 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003160 818 AAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 818 l~~~~~~l~~~~~~l~~l~ 836 (843)
|+.++++++.+++.|+.|+
T Consensus 22 laaleselqalekklaalk 40 (48)
T 1g6u_A 22 LAALESELQALEKKLAALK 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 127
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.40 E-value=43 Score=20.23 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhc
Q 003160 778 RLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 778 rl~k~~~~~~~~~~~~~~kl~ 798 (843)
.|-|+++.+|..+.++++||.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 355666666666666666664
No 128
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.98 E-value=1.2e+02 Score=26.46 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
.+++|.+.-++++++++.||..++.+|.+
T Consensus 61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 61 SLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888888775543
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.58 E-value=83 Score=34.13 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
.++.|++.|+++++.++.+++.++.. .+..++++.+-+.+..++...+.+|+..|-|
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELG--------------MKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 45667788888888888888888764 4455677777777778888888888876654
No 130
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=36.54 E-value=80 Score=25.61 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+++.-+..|+-+++..+.-|+.++. +|-+-...+..++.++..+.+.++.+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~--------------~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSE--------------ALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566688899999999988888877 666677777777777777777766655
No 131
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.42 E-value=1.3e+02 Score=25.55 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=46.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh-cCcchhcc----CCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEK----APEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl-~n~~f~~k----ap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
-++++|+...+++|.-.++.+...++-. .||+=++| +-..+|..-+.|+++++.+++....
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988888877766554 35666665 4577889999999999988876554
No 132
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.18 E-value=78 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
.|.+.-...|+++++.++++++++++++
T Consensus 61 ~~~~e~~~~L~~~~e~i~~~i~~le~~~ 88 (107)
T 1fxk_A 61 VAKDELTEELQEKLETLQLREKTIERQE 88 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677888888888887777776643
No 133
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.11 E-value=44 Score=22.88 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
|++.|+.++..+++.++.+..||
T Consensus 21 elaaleselqalekklaalkskl 43 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 134
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=35.24 E-value=1.5e+02 Score=25.74 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+...|.++|.++.++.+.++..++- ..+.-+.+.+.+..+...-+..|..|+.
T Consensus 12 q~~~~ql~~qL~k~~~~r~~Le~~w~~----------k~E~~k~qV~~L~~~~q~sE~~L~~Lqq 66 (112)
T 1x79_B 12 QLMLRQANDQLEKTMKDKQELEDFIKQ----------SSEDSSHQISALVLRAQASEILLEELQQ 66 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766432 4555566666666666666666666654
No 135
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=34.64 E-value=24 Score=36.88 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCCccChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 766 LADMVDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 766 l~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
+.++++++..++.+++|++.|..+++++++..
T Consensus 8 i~DLl~id~~I~~i~~eRd~La~~lq~~~~~~ 39 (355)
T 3etv_A 8 IDDLLNINDRIKQVQNERNELASKLQNLKQSL 39 (355)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45678999999999999999999999988655
No 136
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.22 E-value=40 Score=37.30 Aligned_cols=64 Identities=13% Similarity=0.346 Sum_probs=33.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchh-ccCCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV-EKAPEDV---VRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~-~kap~~v---v~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
+.++++...++.+++.++.+.+.+.+.+..-.=- ..+ +++ +.+.+++++++++++..+++.+..
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV-DELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777776665531000 111 122 233344555555555555555543
No 137
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.69 E-value=1.3e+02 Score=25.48 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 779 LSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
.++++.+++++++.|..-|=+ -|..=|. ..+..-+.++.+..+++..|++
T Consensus 45 aE~~~~~ie~ElEeLTasLFe-----EAN~MVa-~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 45 AEEEADKLNKEVEDLTASLFD-----EANNMVA-DARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 447777788888877776633 4444444 3456667777777788777765
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.55 E-value=23 Score=39.47 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=17.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARL 797 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl 797 (843)
+.++++...++.+++.++.+.+.+.+.+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666554
No 139
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.44 E-value=70 Score=20.24 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLV 794 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~ 794 (843)
+..|++.|.|+++.+.-|++.+.
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666554
No 140
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.34 E-value=94 Score=35.39 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 810 VVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 810 vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
..++.++++.+++.+.+.+.+.+++|.+.
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777776776666666553
No 141
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.22 E-value=1.6e+02 Score=28.19 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
++++..++|+...++..++++..
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444444433
No 142
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=33.20 E-value=1.2e+02 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 809 DVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 809 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
+-+..-+.|+..++.++.+.+..|....
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777766666665544
No 143
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=32.83 E-value=2e+02 Score=23.33 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVM 840 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~ 840 (843)
+...+..|+|+-+++++.+++-...-. .++.+- ...-..--.+-.-++.+|.++...+.+|..++.
T Consensus 11 Lr~~~d~L~kkq~~L~~~i~~e~~~Ak--~~~~kn-K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 11 LRDTEEMLSKKQEFLEKKIEQELTAAK--KHGTKN-KRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcC-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666555555554332221 233322 222222333445677888888888888877653
No 144
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.80 E-value=80 Score=27.84 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNR 831 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~ 831 (843)
.+|+.+|..++..+|..+++.++.|...+-. ..-+.-.-.||.++++.|.+-...
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q----QnQQSlDiRKLrELEADLKEKDsM 113 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQ----QNQQSLDMRKLGELEADLKEKDSM 113 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH----HhHhhhhHHHHHHHHhHHhhhhHH
Confidence 5677777666666677666666666542221 223334445666666666544333
No 145
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=32.45 E-value=1.1e+02 Score=26.37 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhcCcchhc-cCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhh
Q 003160 775 EVQRLSKRLSKMQSEYDGLVARLSSSKFVE-KAPEDVVRGVQEKAAEAEEK----INLTKNRLAFLRSTV 839 (843)
Q Consensus 775 e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~-kap~~vv~~~~~kl~~~~~~----l~~~~~~l~~l~~~~ 839 (843)
-+.||-|+..-+++|++.-+.++.. |.. .+.+..+.+.++=|.+.+.- ..++++++..|+.++
T Consensus 15 ~vkRL~KE~~~Y~kE~~~q~~riek--~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 82 (108)
T 1h7c_A 15 VVRRLVKERVMYEKEAKQQEEKIEK--MRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRIL 82 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888777766 333 34566666666666666533 234455555555544
No 146
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=32.09 E-value=64 Score=23.33 Aligned_cols=26 Identities=23% Similarity=0.320 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
.|+-||+++++.|+++.+.-..-|..
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e 31 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTE 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 47889999999999998888777765
No 147
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=32.03 E-value=1.2e+02 Score=29.89 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 003160 783 LSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI-----NLTKNRLAFLRST 838 (843)
Q Consensus 783 ~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l-----~~~~~~l~~l~~~ 838 (843)
+..++.-+-.++++|.. +..+.+++-.++.++.++++++-| +.+++++++|+++
T Consensus 145 kn~le~~i~~~~~~l~~--~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~ 203 (227)
T 1u00_A 145 KVEAARVLESLHGALAA--DAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQ 203 (227)
T ss_dssp HHHHHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--hhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34455566667777754 667888888888888887777433 4566666666553
No 148
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.94 E-value=1.1e+02 Score=33.42 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
++.|+..+++++++++.++++++. -.+..+++|.+.+.+..++...+.+++..|-|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAA--------------ELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 556677777777777777776655 34455577777788888888888888876654
No 149
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=31.66 E-value=1.7e+02 Score=26.94 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCC--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAP--E-------DVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap--~-------~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+...+..+++++..|+-+..++.+... ..+-.| + .+...-..+.++..++...+...++.+..|
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~~e~~---~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVVDQVR---RQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455666666666666666544333 111112 2 344555556666666666677777776654
No 150
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=31.49 E-value=71 Score=33.83 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 807 PEDVVRGVQEKAAEAEEKINLTKNRL 832 (843)
Q Consensus 807 p~~vv~~~~~kl~~~~~~l~~~~~~l 832 (843)
.++..+..++.+++++++++.++..|
T Consensus 67 D~e~~~~a~~e~~~l~~~~~~le~~l 92 (354)
T 3d5a_X 67 DPELKEMAKAEREALLARKEALEKEL 92 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555544444433
No 151
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=31.19 E-value=1.6e+02 Score=29.64 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
+..+.+++..++++++.++ |.+.++ +++.-.+..+..+...+++++..+..|+..+..
T Consensus 70 ~~a~a~l~~a~~~~~r~~~-L~~~g~---~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~ 127 (277)
T 2f1m_A 70 AKAQAAANIAQLTVNRYQK-LLGTQY---ISKQEYDQALADAQQANAAVTAAKAAVETARIN 127 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTTSTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555543 333443 466677777788888888888888777766543
No 152
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.77 E-value=1.1e+02 Score=30.85 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
|.+.++.+++.+++.++..+++.+++|.+
T Consensus 57 d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 57 ALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57778888888888888888888888865
No 153
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.45 E-value=2e+02 Score=25.35 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 829 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 829 (843)
+.+..|..|..+++.+..+++++..-- ..+|..-+.++.+++++|+.-.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~----------q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTES----------QRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999884422 2367777888888888777643
No 154
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=30.42 E-value=2.1e+02 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKA-AEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl-~~~~~~l~~~~~~l~~l~~~~ 839 (843)
|+++-...+.++++.+.+++..++ .||++ ++.+...-.++ .....--+.+.+.|+.|.+|.
T Consensus 25 dveksv~~~~k~l~~l~~el~~ie-----kGFL~---k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ 86 (135)
T 1i6z_A 25 DLEVSAEKIANHLQELNKELSGIQ-----QGFLA---KELQAEALCKLDRKVKATIEQFMKILEEIDTMV 86 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcchh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444444555555555555555555 48875 33333333333 233333455666677776654
No 155
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=30.13 E-value=1.7e+02 Score=28.74 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 003160 786 MQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI-----NLTKNRLAFLRST 838 (843)
Q Consensus 786 ~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l-----~~~~~~l~~l~~~ 838 (843)
++.-+.++++.|.. |-.+.|++-.++.++.++++++-| +.+++++++|++.
T Consensus 151 le~~i~~~~~~l~~--~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~~~ 206 (219)
T 4e81_A 151 GDHLLHSTRKQVEE--AGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQV 206 (219)
T ss_dssp HHHHHHHHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33445566666654 667888888888888887777554 4566666666553
No 156
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.10 E-value=1.1e+02 Score=27.38 Aligned_cols=26 Identities=12% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCcc
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLSSSK 801 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~n~~ 801 (843)
+..|+.+..++..+...+...|..+.
T Consensus 36 r~ele~~~~~l~~Ek~~L~~qL~~E~ 61 (129)
T 2fxo_A 36 RKELEEKMVSLLQEKNDLQLQVQAEQ 61 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555433
No 157
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.86 E-value=72 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 003160 815 QEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 815 ~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
++.++.+++++.+++..+.+|.+
T Consensus 32 ~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 32 SEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 158
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.71 E-value=2.3e+02 Score=23.19 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 808 EDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 808 ~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.+-++.-++.+.++++++++.+..|+.|..
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677788888888888888888887764
No 159
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=29.69 E-value=1.5e+02 Score=25.78 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=33.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKA-AEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl-~~~~~~l~~~~~~l~~l~~~~ 839 (843)
.|+++-.....++++.+.+++..+++ ||+. ++.+.+.-.|| .....--+.+.+.|++|.+|.
T Consensus 14 ~~veksv~~~~kkl~~~~~el~~iek-----GFL~---kel~~eal~kldKrik~~~E~~MK~LE~lDsl~ 76 (114)
T 1hx1_B 14 KHLEKSVEKIADQLEELNKELTGIQQ-----GFLP---KDLQAEALCKLDRRVKATIEQFMKILEEIDTLI 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCSC---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----cccc---cHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 45556666667777777777777765 7863 33332222222 222233344555666666654
No 160
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.39 E-value=1.6e+02 Score=23.76 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKA-PEDVVRGVQEKAAEAEEKINLTKNRLAFLRST 838 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~ka-p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~ 838 (843)
++-+.|+..++...+.|++.+++.-+. =.-.+. =++++.+-+..-++++..++.++...+.|...
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~E-L~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEED-LKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888877543221 111110 12344444444555566666666666666543
No 161
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.88 E-value=1.1e+02 Score=26.97 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
..+.++|+-+++.++..++.++.|..+
T Consensus 33 ~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 33 TNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344455555555555555555554443
No 162
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.85 E-value=1.2e+02 Score=33.25 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 811 VRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 811 v~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+-+.||++|+.++.++++.|++++.
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667888888888888888888765
No 163
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.77 E-value=46 Score=37.66 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcccccCcCccccCchhHHHHHHHHHHHHHHcCceee
Q 003160 56 KEKYGGTITSQIKRLGASCDWTRERFTLDEQLSRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 56 ~~~~~~~~~~q~~~lG~~~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr 106 (843)
..++.+.|.++|+.||+.. +..++. .+|.........+|.++|+.|.
T Consensus 144 ~~e~~~~I~edL~wLGl~w--d~~~~q--Sdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 DPEAYDMIPADLEWLGVEW--DETVIQ--SDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp CTTHHHHHHHHHHHHTCCC--SEEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHHHcCCCC--CCCccc--ccCHHHHHHHHHHHHHcCCcee
Confidence 3567889999999999654 444444 4566777888899999999996
No 164
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=28.58 E-value=78 Score=23.61 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
+..|.+.|+.+.+.|.++++.+.++|..
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677778888888888888877764
No 165
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.36 E-value=1.9e+02 Score=23.47 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
++-.|+.-|.-++..++.|-..+++||.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKs 51 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKA 51 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45578888888888899998888888865
No 166
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=28.25 E-value=2.6e+02 Score=23.36 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcch-hccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKF-VEKAPEDVVRGVQEKAAE---AEEKINLTKNRLAFLRS 837 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f-~~kap~~vv~~~~~kl~~---~~~~l~~~~~~l~~l~~ 837 (843)
..-+.+.++++..+.+.|+.+++.|....- -.-.|.++....++..+. +-++++.|.+.++.++.
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999988543 234578887776665543 34556666666555554
No 167
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=27.99 E-value=67 Score=35.84 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCcCcccccchHHHHHHH--HHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc---------
Q 003160 15 LPGTDHAGIATQLVVEKML--AAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE--------- 79 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~--------- 79 (843)
|+|.=|-|-+--. .-..+ +.. |. ..+|..++. -...+.+.|.++|+.||+. |+..
T Consensus 34 PtG~LHiG~~rta-l~n~l~Ar~~~G~filRieDtD~~R-------~~~~~~~~I~~dL~wlGl~--wDe~~~~gG~~gp 103 (488)
T 3afh_A 34 PTGHLHVGGARTA-LFNWMFARKEGGKFILRIEDTDTER-------SSREYEQQILESLRWCGLD--WDEGPDIGGDFGP 103 (488)
T ss_dssp CSSSCBHHHHHHH-HHHHHHHHHHTCEEEECBCCCCTTT-------CCHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCC
T ss_pred CCCCccHHHHHHH-HHHHHHHHHcCCEEEEEEeeCCccc-------ccHHHHHHHHHHHHHcCCC--CCcCCCCCCCCCC
Confidence 5799999986322 22322 333 31 222322221 1256778899999999964 6552
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
|+.+ ++....+....+|.++|++|.-
T Consensus 104 ~~QS--er~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 104 YRQS--ERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp CBGG--GCHHHHHHHHHHHHHTTSEEEE
T ss_pred eeee--CCHHHHHHHHHHHHHcCCeEec
Confidence 4443 3446778888999999999974
No 168
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=27.67 E-value=1.8e+02 Score=23.48 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=47.6
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHh-cCcchhccC----CHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEKA----PEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl-~n~~f~~ka----p~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
+++-++++|+...+++|.-..+.+...++-. .||+=++|. -..+|..-+.|+++++.+|+..-.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344678899999999888887777666544 356666653 567889999999999988876544
No 169
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.16 E-value=2.1e+02 Score=24.24 Aligned_cols=55 Identities=20% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
.++.-|++++..++.++++++..|..- ....+....+..+.+++.+.+...|.-|
T Consensus 44 ~ei~sL~kKiq~lE~eld~~~e~l~~a-------~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 44 EEQQGLQKKLKGTEDEVEKYSESVKEA-------QEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443310 0122333444555566666666555433
No 170
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.82 E-value=1.5e+02 Score=32.42 Aligned_cols=69 Identities=17% Similarity=0.273 Sum_probs=45.6
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHHhHhcCcchh-ccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 768 DMVDISAEVQRLSKRLSKMQSEYDGLVARLSSSKFV-EKA--PEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 768 ~~id~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~-~ka--p~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
..+.++++...++.+++.++.+.+.+.+.+..-.=. ..+ -.+-+.+.+++++++++++..+++.+..+-
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888999998888888887641100 111 123345566777777777777777775543
No 171
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.80 E-value=2.5e+02 Score=22.67 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTK 829 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~ 829 (843)
...+++.|..++..-...+..+.. ++|+..++...=.+|..++++++.+.
T Consensus 11 ~~~~~~~l~~~V~~QG~~VR~LKa--------~kA~k~~i~~aV~~Ll~LKa~l~~~t 60 (79)
T 2djv_A 11 KPQQIQALMDEVTKQGNIVRELKA--------QKADKNEVAAEVAKLLDLKKQLAVAE 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhh--------ccCcHhHhhHHHHHHHHHHHHHHHhc
Confidence 456677788888777777777764 68999999999899988888887664
No 172
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=26.60 E-value=94 Score=34.20 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003160 817 KAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 817 kl~~~~~~l~~~~~~l~~l 835 (843)
+|++|+++|++.++.+++.
T Consensus 67 ~l~kY~~dlakY~~~~AeY 85 (497)
T 3iox_A 67 KLAKYQADLAKYQKDLADY 85 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 173
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.51 E-value=1.7e+02 Score=24.69 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003160 779 LSKRLSKMQSEYDGLV 794 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~ 794 (843)
|+.+++.++++|++++
T Consensus 52 L~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 52 LEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 174
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.46 E-value=1.8e+02 Score=25.77 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhc
Q 003160 776 VQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 776 ~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
+.+|+-+++.+.+....+++.|.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 175
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.18 E-value=1.9e+02 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
+....+.+|+-+++.+.+....++..|.+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45555666777776666666666666554
No 176
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.93 E-value=1e+02 Score=28.23 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.+.+..|++++..++.++..++.-+.. -...++.-+..+..++.++..++.++..|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~e-------K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIAL-------KNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666666654433 2335566667777777777777777777765
No 177
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=25.68 E-value=89 Score=21.04 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 771 DISAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 771 d~~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
+.-.|-++|.|+++.-+.+|+++++
T Consensus 4 ~~L~ENekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 4 EALKENEKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888988888888888865
No 178
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.52 E-value=2.5e+02 Score=22.27 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 808 EDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 808 ~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
++.++.-.+.|++..+++..++..|-.|++.+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34566677788888888888888888887643
No 179
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=25.14 E-value=2.6e+02 Score=23.49 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=49.5
Q ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHhHh-cCcchhcc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 767 ADMVDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEK----APEDVVRGVQEKAAEAEEKINLTKNR 831 (843)
Q Consensus 767 ~~~id~~~e~~rl~k~~~~~~~~~~~~~~kl-~n~~f~~k----ap~~vv~~~~~kl~~~~~~l~~~~~~ 831 (843)
+.+-++++|+...+++|.-..+.+...++-. .||+=++| +-..+|..-+.|+++++.+++.....
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~ 74 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAA 74 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445788999999999988888777766554 35666655 45778999999999999998876653
No 180
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=24.96 E-value=86 Score=35.88 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=49.8
Q ss_pred CCCcCcccccchHHHHHHH--HHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCc---------
Q 003160 15 LPGTDHAGIATQLVVEKML--AAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTRE--------- 79 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r~--------- 79 (843)
|+|.=|-|-+--. +-..+ +.. |. ..++..++ .-...+.+.|.++|+.||+. |+..
T Consensus 138 PTG~LHiG~artA-l~n~l~Ar~~~G~~ilRieDtD~~-------r~~~~~~~~I~~dL~wlGl~--~D~~~~~gG~~gp 207 (592)
T 3al0_C 138 PTGHLHVGGARTA-LFNWMFARKEGGKFILRIEDTDTE-------RSSREYEQQILESLRWCGLD--WDEGPDIGGDFGP 207 (592)
T ss_dssp SSSCCBHHHHHHH-HHHHHHHHHHTCEEEECBCCCCSS-------SCCHHHHHHHHHHHHHTTCC--CSBBTTTBCTTCC
T ss_pred CCCCccHHHHHHH-HHHHHHHHhcCCcEEEEecCcChh-------hccHHHHHHHHHHHHHcCCC--CCCCCCcCCCCCC
Confidence 5799999986332 22222 333 31 12222111 01245678899999999965 6552
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceeeC
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQG 107 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr~ 107 (843)
|+.++ +....+.+..+|.++|++|.-
T Consensus 208 ~~qSe--r~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 208 YRQSE--RLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp CBSTT--CHHHHHHHHHHHHHTTTEEEE
T ss_pred eeeeC--CHHHHHHHHHHHHHcCCceEe
Confidence 44433 336778888999999999974
No 181
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=24.94 E-value=47 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcc
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSK 801 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~ 801 (843)
+||..+++|+..+++++.+.|+.++
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~~~ 59 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQSEN 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
No 182
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.75 E-value=55 Score=36.66 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=15.9
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
+.++++...++.+++.++.+.+.+.+.+.
T Consensus 73 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 101 (501)
T 1wle_A 73 ISTWQELRQLREQIRSLEEEKEAVTEAVR 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555443
No 183
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.23 E-value=1.2e+02 Score=33.74 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 811 VRGVQEKAAEAEEKINLTKNRLAFL 835 (843)
Q Consensus 811 v~~~~~kl~~~~~~l~~~~~~l~~l 835 (843)
+.+.+++++++++++..+++.+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666665443
No 184
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=24.11 E-value=1.3e+02 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 809 DVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 809 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+++..-..+-.++++++..++.+|..|.+.+
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777788888888777776644
No 185
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=24.00 E-value=2.8e+02 Score=23.90 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=48.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHh-cCcchhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARL-SSSKFVEK----APEDVVRGVQEKAAEAEEKINLTKNRLAF 834 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl-~n~~f~~k----ap~~vv~~~~~kl~~~~~~l~~~~~~l~~ 834 (843)
-++++|+...+++|.-..+.+...++-. .||+=++| +-..+|..-+.|+++++.+|+......+.
T Consensus 25 eeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~ 94 (113)
T 4fi5_A 25 EELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3678899999999988888877766554 35666665 45788999999999999999877665443
No 186
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.74 E-value=1.4e+02 Score=19.19 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 811 VRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 811 v~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
+...++.-+..+++++.+++.++.++-+|
T Consensus 4 iaaikeeqaaieeeiqaikeeiaaikyli 32 (36)
T 1bb1_B 4 IAAIKEEQAAIEEEIQAIKEEIAAIKYLI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666777777777777766544
No 187
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.26 E-value=2.9e+02 Score=23.56 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.8
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 802 FVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 802 f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
|+..-.+++++.-.++...++.+++.+++.+..+..
T Consensus 63 fv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 63 IVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888877777776654
No 188
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.68 E-value=1.3e+02 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~ 798 (843)
++...+.|..+...|+.+++|+++.|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345566677777777777777776654
No 189
>2wy7_Q SBI, IGG-binding protein; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Staphylococcus aureus} PDB: 2wy8_Q 2jvg_A 2jvh_A
Probab=22.66 E-value=1.9e+02 Score=22.04 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=39.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhHhcC------cchhccCCHHHHHHHHHHHHHHHHHH
Q 003160 770 VDISAEVQRLSKRLSKMQSEYDGLVARLSS------SKFVEKAPEDVVRGVQEKAAEAEEKI 825 (843)
Q Consensus 770 id~~~e~~rl~k~~~~~~~~~~~~~~kl~n------~~f~~kap~~vv~~~~~kl~~~~~~l 825 (843)
+.+++.+.|-..+.++..-++.+++.+=+- ..-++|||-+|.+.-+++|..+-++-
T Consensus 12 vsiekaivrhdervKsqnpeISkpqikdsienrrlaqrevnkapmdvkehlqkqldalvaqk 73 (80)
T 2wy7_Q 12 VSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQK 73 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHhhcCccccccchhhhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhh
Confidence 456777777777777777777766544222 23578999999998888887776653
No 190
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=22.15 E-value=90 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
++...+||+..-+.+++.|+.+++-++|
T Consensus 22 lenivarlendnanlekdianlekdian 49 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 4444556655555555555555554443
No 191
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.04 E-value=1.6e+02 Score=27.76 Aligned_cols=69 Identities=7% Similarity=0.138 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVV--RGVQEKAAEAEEKINLTKNRLAFLRSTVMV 841 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv--~~~~~kl~~~~~~l~~~~~~l~~l~~~~~~ 841 (843)
++.++.+|+++-.+++.+|.+..++ .|..-+.---.+++ .+...+|....++|..+.-.+.....+..|
T Consensus 26 Ldr~~~kle~~ekk~~~~Ikka~k~-g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v 96 (179)
T 2gd5_A 26 VDRQIRDIQREEEKVKRSVKDAAKK-GQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRV 96 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555442 12111110112222 344566777778888888877777664433
No 192
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=21.84 E-value=2.9e+02 Score=21.52 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003160 777 QRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 777 ~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~ 836 (843)
..|..++..-+.||+++.. +|..-|.||..|.+-=.+++..+..++
T Consensus 6 KeL~~kl~~Kq~EI~rLnv--------------lvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKK--------------IAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777777777777765 666667777666555555555444433
No 193
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.58 E-value=1.8e+02 Score=20.99 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 003160 815 QEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 815 ~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
|+|+.+++..+.++++.++.|..
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 78888888888888888887764
No 194
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.49 E-value=1.9e+02 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRL 832 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l 832 (843)
+..|+.++++.+...+.++..+++.| +..++|+.+++.++..++..+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l--------------~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMW--------------RVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666677777776644 345677777777777777654
No 195
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.96 E-value=3.3e+02 Score=21.90 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 778 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 778 rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.|+.++..-|..++.+...|.+- .+.|.+..+......|.+..+.|..+...++-+.+
T Consensus 26 ~lrq~I~DKQ~~i~~Lt~eLq~A--~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~ 83 (90)
T 4b6x_A 26 ALRQEIEDKQLMVNNLTDELQDA--IDEANPAEIANTSQQLRHARADLADLQRRFAVLRN 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555555566666666665542 35788888899999999999999999998877654
No 196
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.87 E-value=3.5e+02 Score=23.72 Aligned_cols=21 Identities=14% Similarity=0.204 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 003160 816 EKAAEAEEKINLTKNRLAFLR 836 (843)
Q Consensus 816 ~kl~~~~~~l~~~~~~l~~l~ 836 (843)
...++|++.+..|++.|+...
T Consensus 75 ~l~k~Y~~~~keLd~~ik~qe 95 (119)
T 3etw_A 75 ELASKYEDALKKLEAEMEQQK 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 197
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.82 E-value=1.6e+02 Score=18.76 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVA 795 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~ 795 (843)
+.++.+|+.-..++|+.+++++.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555543
No 198
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.79 E-value=3.4e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003160 778 RLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRSTV 839 (843)
Q Consensus 778 rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~~~ 839 (843)
..+...+.++..++++.+ ..+-.|-.+-=..++.+-+.-+.++++++..-++.+..|..+.
T Consensus 45 ~~~~l~~~i~er~~~i~~-~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 45 QNEQVYNELSQRAQRLQA-EANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555544 3344444555566777788888888888888888887776654
No 199
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.59 E-value=26 Score=31.65 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred CccChHHHHHHHHH--------------HHHHHHHHHHHH--------HhHhcCcchhccCCHHHHHHHHHHHHHHHHHH
Q 003160 768 DMVDISAEVQRLSK--------------RLSKMQSEYDGL--------VARLSSSKFVEKAPEDVVRGVQEKAAEAEEKI 825 (843)
Q Consensus 768 ~~id~~~e~~rl~k--------------~~~~~~~~~~~~--------~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l 825 (843)
++-+++.|+++|.. ++.++++|++.+ ++..++..-...+-+.-+++-++++.+.+..+
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhh
Q 003160 826 NLTKNRLAFLRSTV 839 (843)
Q Consensus 826 ~~~~~~l~~l~~~~ 839 (843)
..++..|..|+.+|
T Consensus 120 ~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 120 DTLTLQLKNLKKVM 133 (135)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHh
No 200
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=20.50 E-value=1.2e+02 Score=33.89 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCCcCcccccchHHHHHHH--HHc-CC---CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcC---------c
Q 003160 15 LPGTDHAGIATQLVVEKML--AAE-GI---KRVELSRDEFTKRVWEWKEKYGGTITSQIKRLGASCDWTR---------E 79 (843)
Q Consensus 15 ~~G~D~~Gl~~e~~vek~l--~~~-g~---~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~lG~~~Dw~r---------~ 79 (843)
|+|.=|-|-.--. .-..+ ++. |. ..+|..++. -...+.+.|.++|+.||+ ||+. +
T Consensus 15 PTG~LHiG~~rtA-L~n~l~Ar~~gG~fiLRieDtD~~R-------~~~~~~~~I~~~L~wlGl--~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 15 PTGTPHVGLVRTA-LFNWAYARHTGGTFVFRIEDTDAQR-------DSEESYLALLDALRWLGL--DWDEGPEVGGPYGP 84 (498)
T ss_dssp SSSSCBHHHHHHH-HHHHHHHHHHTCEEEECBCCCCTTT-------CCHHHHHHHHHHHHHHTC--CCSBBTTTBCTTCC
T ss_pred CCCCccHHHHHHH-HHHHHHHHHcCCEEEEEECcCCCcc-------cChHHHHHHHHHHHHcCC--CcCCCcCcCCCCCC
Confidence 6799999976322 22322 333 32 223322221 124677899999999995 5655 4
Q ss_pred cccCchhHHHHHHHHHHHHHHcCceee
Q 003160 80 RFTLDEQLSRAVVEAFIRLHEKGLIYQ 106 (843)
Q Consensus 80 ~~T~d~~~~~~v~~~F~~L~~~GlIyr 106 (843)
|+.+ ++...-+....+|.++|++|.
T Consensus 85 ~~QS--~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 85 YRQS--QRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred eeee--cCHHHHHHHHHHHHHcCCeEE
Confidence 5543 345566778889999999996
No 201
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.40 E-value=1.1e+02 Score=23.59 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
...++.|+.+++.|+..++.++..|++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345788999999999999999888764
No 202
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.27 E-value=2e+02 Score=19.35 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003160 816 EKAAEAEEKINLTKN 830 (843)
Q Consensus 816 ~kl~~~~~~l~~~~~ 830 (843)
.+..+++.+.+++++
T Consensus 15 ~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 15 SKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 333333333333333
No 203
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.19 E-value=1.4e+02 Score=22.13 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 809 DVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 809 ~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.=+++-+...++++++++.+.+.++++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666665554
No 204
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.19 E-value=3.3e+02 Score=25.62 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 003160 780 SKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKN 830 (843)
Q Consensus 780 ~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~ 830 (843)
.++...+..++...+..|+..-.-++..++.+++-.+++.+++.++.....
T Consensus 84 r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 84 YTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443334555667777777777777776655443
No 205
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.19 E-value=3.3e+02 Score=21.69 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhHhc
Q 003160 779 LSKRLSKMQSEYDGLVARLS 798 (843)
Q Consensus 779 l~k~~~~~~~~~~~~~~kl~ 798 (843)
++.++.+++..++.++-|++
T Consensus 5 lEEKv~~LE~sld~LQTrfA 24 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFA 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776654
No 206
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.19 E-value=2.5e+02 Score=30.84 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=14.2
Q ss_pred EEEecCCCccChHHHHHHHHH
Q 003160 761 EAYLPLADMVDISAEVQRLSK 781 (843)
Q Consensus 761 ~~~~~l~~~id~~~e~~rl~k 781 (843)
-||+.+...++...+.+|.+.
T Consensus 282 PlYISvs~ilt~~elkqrqee 302 (551)
T 2b5u_A 282 AVYVSVSDVLSPDQVKQRQDE 302 (551)
T ss_dssp CEEEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEeecCCHHHHHHHHHH
Confidence 478888887777766544443
No 207
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.17 E-value=2.8e+02 Score=25.41 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAA------EAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~------~~~~~l~~~~~~l~~l~~ 837 (843)
++.-.++|..+++.+..++.....-+.++.-...-|.+....+.+..- ..+..|.+|..+|..+..
T Consensus 37 l~~fr~~L~~~k~eL~~~l~~~~~~~~~~~~~~~D~~D~As~~~e~~l~~~~~~re~~~L~~i~~Al~ri~~ 108 (151)
T 1tjl_A 37 LAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVED 108 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444467788888888888877765554322111112222222222211 234667778888877653
No 208
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.15 E-value=3.4e+02 Score=23.68 Aligned_cols=28 Identities=7% Similarity=0.252 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcC
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSS 799 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n 799 (843)
.+++++.|.+++..+..+-.++.-.+.|
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn 45 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDN 45 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776666655554
No 209
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=20.05 E-value=3.6e+02 Score=25.32 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCc-ch-------h--------ccCCHHHHHHHHHHHHHHHHHH
Q 003160 773 SAEVQRLSKRLSKMQSEYDGLVARLSSS-KF-------V--------EKAPEDVVRGVQEKAAEAEEKI 825 (843)
Q Consensus 773 ~~e~~rl~k~~~~~~~~~~~~~~kl~n~-~f-------~--------~kap~~vv~~~~~kl~~~~~~l 825 (843)
..|++||-.++.+..++|+.+...|.|- .+ . ++-..+.++.++.||...+...
T Consensus 97 greiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaY 165 (294)
T 3caz_A 97 GREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAY 165 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHH
Confidence 3578999999999999999888877762 11 1 1345566677777776555443
No 210
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=20.02 E-value=3e+02 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhcCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 772 ISAEVQRLSKRLSKMQSEYDGLVARLSSSKFVEKAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 772 ~~~e~~rl~k~~~~~~~~~~~~~~kl~n~~f~~kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
..+++++.+.+++..+.++++.+. |...+.++ ..-.+..+..+..++++++..+..|+.++.
T Consensus 96 a~~~l~~a~a~l~~a~~~~~r~~~-L~~~~~~s---~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~ 157 (359)
T 3lnn_A 96 ANSDAAKARAAMTMARRNLDRQRE-LDKSEIAA---KRDFEQAQSDYDQAASESQRADARLAQLGA 157 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TTSSSCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356677888888888888888864 44555543 345667777888888888888888877654
No 211
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.01 E-value=1.8e+02 Score=32.00 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcC-cchhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003160 774 AEVQRLSKRLSKMQSEYDGLVARLSS-SKFVE--KAPEDVVRGVQEKAAEAEEKINLTKNRLAFLRS 837 (843)
Q Consensus 774 ~e~~rl~k~~~~~~~~~~~~~~kl~n-~~f~~--kap~~vv~~~~~kl~~~~~~l~~~~~~l~~l~~ 837 (843)
.++..|.++..+++.+++.++++-|. .+=+. |+..+-.++.+++..++.++++.+++.+.++.+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777788887777766554 11111 222233445566677777777777777776665
Done!