BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003161
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V53|A Chain A, Crystal Structure Of Human Rbm25
pdb|3V53|B Chain B, Crystal Structure Of Human Rbm25
pdb|3V53|C Chain C, Crystal Structure Of Human Rbm25
pdb|3V53|D Chain D, Crystal Structure Of Human Rbm25
pdb|3V53|E Chain E, Crystal Structure Of Human Rbm25
Length = 119
Score = 109 bits (273), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/103 (45%), Positives = 72/103 (69%)
Query: 735 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 794
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 15 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 74
Query: 795 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 837
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 75 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 117
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 191 NKFNIDGQELMVDQATRE 208
N G+ L VD A E
Sbjct: 71 NGREFSGRALRVDNAASE 88
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186
Query: 190 LNKFNIDGQELMVDQA 205
+N F++ GQ L V +A
Sbjct: 187 MNLFDLGGQYLRVGKA 202
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 33/78 (42%)
Query: 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188
++VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88
Query: 189 LLNKFNIDGQELMVDQAT 206
+N + G+ + V + +
Sbjct: 89 QMNSVMLGGRNIKVGRPS 106
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 112 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 171
Query: 190 LNKFNIDGQELMVDQAT 206
+N F++ GQ L V +A
Sbjct: 172 MNLFDLGGQYLRVGKAV 188
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
+VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 15 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 74
Query: 190 LNKFNIDGQELMV 202
+N + G+ + V
Sbjct: 75 MNSVMLGGRNIKV 87
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 111 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 170
Query: 190 LNKFNIDGQELMVDQA 205
N F++ GQ L V +A
Sbjct: 171 XNLFDLGGQYLRVGKA 186
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
+VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 190 LNKFNIDGQELMVDQAT 206
N + G+ + V + +
Sbjct: 74 XNSVXLGGRNIKVGRPS 90
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YVG + D + + + G ++S + G KG+GF F +E +AL
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87
Query: 190 LNKFNIDGQELMVDQAT 206
LN F + G+ + V T
Sbjct: 88 LNGFELAGRPMKVGHVT 104
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA---QYPSNGTPKGFGFCEFESAEGVLR 185
TKV++G++ D ++ + G +K +P KG+ + EFE+ + +
Sbjct: 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH--LSKGYAYVEFENPDEAEK 62
Query: 186 ALRLLNKFNIDGQEL 200
AL+ ++ IDGQE+
Sbjct: 63 ALKHMDGGQIDGQEI 77
>pdb|1MP1|A Chain A, Solution Structure Of The Pwi Motif From Srm160
Length = 111
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 765 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDE-AEMFVLKM 822
E ++PWI+K++TE LG E+ ++++I + + S+M+++ L L+ + A F+ ++
Sbjct: 23 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGEL 82
Query: 823 WRMLI 827
W +L+
Sbjct: 83 WPLLL 87
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
+YVG + D + + + G + + + G KG+GF F +E RAL L
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 191 NKFNIDGQELMVDQAT 206
N F + G+ + V T
Sbjct: 68 NGFELAGRPMRVGHVT 83
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 98 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 157
Query: 190 LNKFNIDGQELMVDQAT 206
LN + ++L+V +A+
Sbjct: 158 LNGMQLGDKKLLVQRAS 174
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175
Query: 190 LNKFNIDGQELMVDQAT 206
LN + ++L+V +A+
Sbjct: 176 LNGMQLGDKKLLVQRAS 192
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 96 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155
Query: 190 LNKFNIDGQELMVDQAT 206
LN + ++L+V +A+
Sbjct: 156 LNGMQLGDKKLLVQRAS 172
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 40/77 (51%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 190 LNKFNIDGQELMVDQAT 206
LN + ++L+V +A+
Sbjct: 63 LNGMQLGDKKLLVQRAS 79
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 2 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Query: 187 LRLLNKFNIDGQEL 200
+R LN + + + L
Sbjct: 62 VRNLNGYQLGSRFL 75
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 3 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 62
Query: 187 LRLLNKFNIDGQEL 200
+R LN + + + L
Sbjct: 63 VRNLNGYQLGSRFL 76
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Query: 187 LRLLNKFNIDGQEL 200
+R LN + + + L
Sbjct: 61 VRNLNGYQLGSRFL 74
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 169 PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207
+GFGF FE+ + A+ +N ++DG+++ VDQA +
Sbjct: 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 166 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202
NG KG G +FES E RA R++N + G+E+ V
Sbjct: 44 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 166 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202
NG KG G +FES E RA R++N + G+E+ V
Sbjct: 41 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 77
>pdb|1X4Q|A Chain A, Solution Structure Of Pwi Domain In U4U6 SMALL NUCLEAR
Ribonucleoprotein Prp3(Hprp3)
Length = 92
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 760 KHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFV 819
K EL E ++PWI K + LG E T+V ++ + + + L+ LDD FV
Sbjct: 12 KRELDE-LKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFV 70
Query: 820 LKMW 823
K++
Sbjct: 71 DKLF 74
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 149 LKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203
+V G +K +G P+G+ F E+E + A + + IDG+ ++VD
Sbjct: 123 FEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
+YVG + +A S+ V + G V + K PKGFGF E + E V A+ L
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAIAKL 62
Query: 191 NKFNIDGQELMVDQA 205
+ + G+ + V +A
Sbjct: 63 DNTDFMGRTIRVTEA 77
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 149 LKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203
+V G +K +G P+G+ F E+E + A + + IDG+ ++VD
Sbjct: 123 FEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 167 GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205
G+ KGFGF +F S E A + IDG ++ +D A
Sbjct: 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFCQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3N9U|C Chain C, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
pdb|3N9U|I Chain I, Crystal Structure Of The Complex Between The 25 Kda
Subunit And The 59 Kda Subunit (Rrm Domain) Of Human
Cleavage Factor Im
Length = 156
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188
VYVG + ++ V++ G V K A+ +NG KG+ S V + L
Sbjct: 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLE 117
Query: 189 LLNKFNIDGQELMVDQATREYLERY 213
LL ++G+++ V ATR+ L ++
Sbjct: 118 LLPGKVLNGEKVDVRPATRQNLSQF 142
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFCEHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
+YVG + A ++ + + CG+V +G PKGF + EF E V +L L
Sbjct: 8 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 66
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 96 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 153
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 154 SHEHLEGALDR 164
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 54 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 111
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 112 SHEHLEGALDR 122
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE---SAEG 182
K K+++G + D + GTV K + P+ G +GFGF FE S +
Sbjct: 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 60
Query: 183 VLRALRLLNKFNID 196
V++ +L+ ID
Sbjct: 61 VVKTQHILDGKVID 74
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 167 GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202
G PK FGF F+ E V A+ LLN + G+ + V
Sbjct: 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 184
E +YVG + A ++ + + CG+V +G PKGF + EF E V
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 62
Query: 185 RALRL 189
+L L
Sbjct: 63 TSLAL 67
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 171 GFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207
GFGF E++ E +AL+ L +DG +L V + R
Sbjct: 51 GFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 87
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 645 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 703
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLEHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 704 --EHKEKILDR 712
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 192
V I T D + + + G ++S K +G+GF +F+S +A+ LN
Sbjct: 47 VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG 106
Query: 193 FNIDGQELMVDQA 205
FNI + L V A
Sbjct: 107 FNILNKRLKVALA 119
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAE 181
E+ T +Y+ + + D + ++LK G V S R S+GT +G GF ES E
Sbjct: 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTE 77
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 166 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203
NG KG+ F EF S E AL NK I+G+ + ++
Sbjct: 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG ++P ++ + S G + + + + G KG+GF F + A+ +
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 77
Query: 191 NKFNIDGQELMVDQATRE 208
+ G+++ + ATR+
Sbjct: 78 GGQWLGGRQIRTNWATRK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,557,468
Number of Sequences: 62578
Number of extensions: 691256
Number of successful extensions: 1307
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 98
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)