BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003161
(843 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 735 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 794
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 795 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 838
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 102 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 140
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 201 M--VDQATREYLERYVDKK 217
+ VD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNE 246
LRLL+ I ++L+V VD KT K D K+ S +
Sbjct: 144 LRLLHDLQIGEKKLLVK----------VDAKT------KAQLDEWKAKKKASNGNARPET 187
Query: 247 PTKSPENLKDNETGNKESHDPTNFGVVTEE--------DRKADQEALEKLTCMVEERLKT 298
T E D ET ++ V+ E +++D +K E+ +
Sbjct: 188 VTNDDEEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIFRR 247
Query: 299 NPLPPPPPQTTADGSGISNSELPAKARD 326
P+ P P I+ E+ RD
Sbjct: 248 FPVAPLIPYPLITKEDINAIEMEEDKRD 275
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 735 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 794
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 795 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 838
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 102 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 140
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 201 M--VDQATREYLERYVDKKTENTKKLKET 227
+ VD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 42/171 (24%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE+
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEY--------- 134
Query: 187 LRLLNKFNIDGQELMVDQATREYLERYVDKKTENT-KKLKETQDAGAGKEDESVQSVEKN 245
K+ E+T + L+ D G++ V+ K
Sbjct: 135 -----------------------------KEPESTLRALRLLHDLQIGEKKLLVKVDAKT 165
Query: 246 EPTKSPENLKDNETGNKESHDPTNFG--VVTEEDRKADQEALEKLTCMVEE 294
+ K GN TN + EE ++ DQ + ++ E
Sbjct: 166 KAQLDEWKAKKKANGNARPETVTNDDEEALDEETKRRDQMIKGAIEVLIRE 216
>sp|Q8WZK0|US107_SCHPO U1 snRNP-associated protein usp107 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp107 PE=1 SV=1
Length = 695
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 727 DNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTL 786
D +K + LI+ IP E L++ I+W+ + L E M+ +++KKI E++G +E +L
Sbjct: 586 DAEKTKRLRSLIEKIPVEAESLWALPIDWSKVTEDLLKEEMQAFVTKKIIEYIGIQEDSL 645
Query: 787 VDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRML 826
+ + + + H A Q++ L L ++A FV K++R L
Sbjct: 646 ITFTIDHIRQHKGAEQLVSELDLALAEDAPEFVSKVYRYL 685
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 119 PTVTP-AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF 177
P V P +++ + +++G I D ++ +L++ G + SW+R N FGF EF
Sbjct: 128 PFVPPNSQQMRRMLFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSM-TSFGFAEF 186
Query: 178 ESAEGVLRALRLLNKFNI 195
ES E RAL LN F +
Sbjct: 187 ESNEQFSRALEALNDFVV 204
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 385 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 444
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 445 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 503
E E KR+++ + E+ E ++ E KR+++ R +KEE L + +E +
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Query: 504 RRAEEEQLQQQQ 515
+R E+E+L++++
Sbjct: 2854 KRQEQERLERKK 2865
Score = 34.7 bits (78), Expect = 3.4, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 18/119 (15%)
Query: 352 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKI 411
K + +R + + + +R R+K+ L +KE E+ R E+ER++KE +R+
Sbjct: 2790 KRQEQERLQKEEELKRQEQERLEREKQEQL--QKEEELKR----QEQERLQKEEALKRQ- 2842
Query: 412 EEAEREYERCLKDWEYREREREK-ERQYEKEKEKERERKRKKE-----ILYDEEEDEDD 464
E ER K+ E + +E+E+ ER+ + E+E+ K K E I+ DE E D
Sbjct: 2843 -----EQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKD 2896
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 352 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVRKEREQRRK 410
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R ER+ R K
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIR-ERD-RDK 892
Query: 411 IEEAEREYERCLKDWEYREREREKERQYEKEKEKER------------ERKRKKEILYDE 458
E +R+ E+ + RE+++EKER +++KE+E+ E+KR KE+ D+
Sbjct: 893 GREKDRDKEQV----KTREKDQEKERLKDRDKEREKVRDKGRDRDRDQEKKRNKELTEDK 948
Query: 459 EEDEDDSR 466
+ E SR
Sbjct: 949 QAPEQRSR 956
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 94/152 (61%), Gaps = 16/152 (10%)
Query: 365 DRSRVHDR---RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERC 421
DR + D+ +GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE
Sbjct: 777 DREKNQDKELEKGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE---- 827
Query: 422 LKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKR 481
KD + +E E+ +E+ +K +EK+R++ R K+ E+D D R++ R L EK R++
Sbjct: 828 -KDQD-KELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREK 884
Query: 482 IREKEEDLADEV-REEEEIAVAKRRAEEEQLQ 512
IRE++ D E R++E++ ++ E+E+L+
Sbjct: 885 IRERDRDKGREKDRDKEQVKTREKDQEKERLK 916
>sp|Q75CK5|NST1_ASHGO Stress response protein NST1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NST1 PE=3
SV=2
Length = 1207
Score = 33.5 bits (75), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 24/91 (26%)
Query: 382 KREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRER----------- 430
KR++ E R ++EAE +++ QR+K+EEA+R+ KD E R+R
Sbjct: 618 KRKQVEEEARLKQEAEAREMQRRENQRKKVEEAKRK-----KDLEMRKRLEEQRRREEEQ 672
Query: 431 --------EREKERQYEKEKEKERERKRKKE 453
E +++R E+++ +E +RKRK+E
Sbjct: 673 ERQRRMKEEIKRKRDQERKQREEEQRKRKQE 703
>sp|P46504|YLX8_CAEEL Uncharacterized protein F23F12.8 OS=Caenorhabditis elegans
GN=F23F12.8 PE=4 SV=2
Length = 980
Score = 33.1 bits (74), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 404 EREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDED 463
ER+Q+ K E+ E+E R K+ + RE ER ++ + E E ++ E R+ I ++E
Sbjct: 310 ERQQQEKFEKMEQERLRQEKEEKARELERRRKLE-ESETARQAELDRQATIYAEQERMAM 368
Query: 464 DSRKRWRRSVLEEKRRKRIREKEEDLADE---VREEEEIAVAKRRAEE 508
+ + R LEEK+R+ R ++E++A E +RE E + + ++R E
Sbjct: 369 ERNRELERIRLEEKKRENERVRQEEIAMEISKIRELERLQLERQRKNE 416
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,854,799
Number of Sequences: 539616
Number of extensions: 16920171
Number of successful extensions: 255228
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2223
Number of HSP's successfully gapped in prelim test: 5183
Number of HSP's that attempted gapping in prelim test: 108903
Number of HSP's gapped (non-prelim): 61787
length of query: 843
length of database: 191,569,459
effective HSP length: 126
effective length of query: 717
effective length of database: 123,577,843
effective search space: 88605313431
effective search space used: 88605313431
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)