Query 003161
Match_columns 843
No_of_seqs 577 out of 2522
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 18:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 1.7E-67 3.7E-72 591.9 31.2 619 127-838 39-668 (668)
2 KOG4661 Hsp27-ERE-TATA-binding 99.8 6.2E-20 1.3E-24 202.9 13.7 83 126-208 403-485 (940)
3 PF01480 PWI: PWI domain; Int 99.7 1.7E-18 3.6E-23 151.9 5.7 68 765-832 2-74 (77)
4 smart00311 PWI PWI, domain in 99.7 1.9E-17 4.1E-22 144.0 8.1 71 761-831 3-73 (74)
5 KOG2146 Splicing coactivator S 99.6 5.7E-17 1.2E-21 167.8 3.4 92 744-839 26-120 (354)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 8.8E-15 1.9E-19 162.8 15.9 83 126-208 267-349 (352)
7 PLN03134 glycine-rich RNA-bind 99.6 6.6E-15 1.4E-19 144.4 11.1 82 126-207 32-113 (144)
8 KOG0113 U1 small nuclear ribon 99.5 5.4E-14 1.2E-18 147.4 13.0 95 125-219 98-192 (335)
9 TIGR01659 sex-lethal sex-letha 99.5 2.1E-13 4.5E-18 151.8 17.9 83 125-207 104-186 (346)
10 KOG0146 RNA-binding protein ET 99.5 3.6E-14 7.9E-19 146.2 7.7 90 119-208 276-365 (371)
11 KOG0125 Ataxin 2-binding prote 99.5 2.9E-13 6.2E-18 143.5 13.8 84 123-208 91-174 (376)
12 KOG0122 Translation initiation 99.4 7.2E-13 1.6E-17 135.9 12.9 84 125-208 186-269 (270)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3E-13 6.6E-18 150.4 10.7 81 127-207 2-82 (352)
14 KOG0121 Nuclear cap-binding pr 99.4 1.8E-13 3.8E-18 127.7 7.2 81 126-206 34-114 (153)
15 PF00076 RRM_1: RNA recognitio 99.4 4.6E-13 1E-17 113.1 9.3 70 131-201 1-70 (70)
16 PLN03213 repressor of silencin 99.4 6E-13 1.3E-17 146.4 11.3 91 126-220 8-100 (759)
17 KOG0145 RNA-binding protein EL 99.4 4.2E-12 9.1E-17 130.7 12.0 82 127-208 277-358 (360)
18 KOG0149 Predicted RNA-binding 99.3 1.7E-12 3.6E-17 132.8 7.2 81 125-206 9-89 (247)
19 TIGR01645 half-pint poly-U bin 99.3 4.1E-12 8.8E-17 149.1 10.8 81 127-207 203-283 (612)
20 TIGR01645 half-pint poly-U bin 99.3 3.8E-12 8.2E-17 149.4 10.0 81 126-206 105-185 (612)
21 KOG0127 Nucleolar protein fibr 99.3 4.2E-12 9.2E-17 141.8 9.6 84 127-211 116-199 (678)
22 KOG0126 Predicted RNA-binding 99.3 4.8E-13 1E-17 131.6 1.9 80 126-205 33-112 (219)
23 KOG0415 Predicted peptidyl pro 99.3 3.7E-12 7.9E-17 135.9 8.2 90 125-214 236-325 (479)
24 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.3E-16 105.8 9.2 70 131-201 1-70 (70)
25 PLN03120 nucleic acid binding 99.3 8.8E-12 1.9E-16 131.5 10.1 75 128-206 4-78 (260)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.5E-11 5.4E-16 142.0 14.1 82 126-207 293-374 (509)
27 KOG0148 Apoptosis-promoting RN 99.3 7.1E-12 1.5E-16 130.1 7.9 82 128-209 62-143 (321)
28 TIGR01659 sex-lethal sex-letha 99.3 1.4E-11 3.1E-16 137.2 10.2 81 127-207 192-274 (346)
29 KOG0117 Heterogeneous nuclear 99.3 1.9E-11 4.1E-16 134.2 10.5 81 126-206 81-162 (506)
30 TIGR01622 SF-CC1 splicing fact 99.2 2E-11 4.4E-16 140.9 10.8 79 128-206 186-264 (457)
31 KOG4207 Predicted splicing fac 99.2 1.2E-11 2.5E-16 124.0 7.2 79 128-206 13-91 (256)
32 smart00362 RRM_2 RNA recogniti 99.2 6.1E-11 1.3E-15 98.8 9.6 72 130-203 1-72 (72)
33 KOG0108 mRNA cleavage and poly 99.2 1.8E-11 3.8E-16 138.7 8.3 80 129-208 19-98 (435)
34 TIGR01628 PABP-1234 polyadenyl 99.2 3.1E-11 6.7E-16 143.2 10.7 78 130-207 2-79 (562)
35 PLN03121 nucleic acid binding 99.2 4.9E-11 1.1E-15 124.1 10.1 76 127-206 4-79 (243)
36 TIGR01628 PABP-1234 polyadenyl 99.2 3.8E-11 8.3E-16 142.4 10.6 83 126-209 283-365 (562)
37 KOG0107 Alternative splicing f 99.2 3.3E-11 7.2E-16 118.4 7.6 75 127-206 9-83 (195)
38 COG0724 RNA-binding proteins ( 99.2 6E-11 1.3E-15 123.6 10.1 80 128-207 115-194 (306)
39 KOG0145 RNA-binding protein EL 99.2 8.1E-11 1.8E-15 121.4 10.7 84 125-208 38-121 (360)
40 TIGR01648 hnRNP-R-Q heterogene 99.2 5.8E-11 1.3E-15 139.2 10.7 79 127-206 57-136 (578)
41 KOG0111 Cyclophilin-type pepti 99.2 1.1E-11 2.4E-16 125.0 4.0 84 127-210 9-92 (298)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.9E-10 6.4E-15 132.5 16.1 79 125-208 272-351 (481)
43 TIGR01622 SF-CC1 splicing fact 99.2 8.2E-11 1.8E-15 135.9 11.1 81 125-206 86-166 (457)
44 smart00360 RRM RNA recognition 99.2 1.2E-10 2.6E-15 96.6 8.8 71 133-203 1-71 (71)
45 KOG0131 Splicing factor 3b, su 99.2 3.4E-11 7.4E-16 118.9 5.7 80 127-206 8-87 (203)
46 KOG0130 RNA-binding protein RB 99.1 7E-11 1.5E-15 111.3 6.5 82 127-208 71-152 (170)
47 KOG0148 Apoptosis-promoting RN 99.1 2.5E-10 5.4E-15 118.8 9.2 76 125-206 161-236 (321)
48 KOG0124 Polypyrimidine tract-b 99.1 7E-11 1.5E-15 126.4 4.6 78 128-205 113-190 (544)
49 cd00590 RRM RRM (RNA recogniti 99.1 8.1E-10 1.8E-14 92.5 10.0 74 130-204 1-74 (74)
50 KOG0144 RNA-binding protein CU 99.1 4.7E-10 1E-14 122.9 10.4 82 125-206 421-502 (510)
51 KOG0114 Predicted RNA-binding 99.1 1.4E-09 3E-14 98.6 11.1 78 128-208 18-95 (124)
52 KOG0127 Nucleolar protein fibr 99.0 8.4E-10 1.8E-14 123.8 10.5 82 127-208 291-378 (678)
53 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.6E-09 3.6E-14 126.7 12.0 82 123-205 170-257 (509)
54 KOG0147 Transcriptional coacti 99.0 4.2E-10 9.1E-15 126.9 6.5 79 128-206 278-356 (549)
55 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.5E-09 3.3E-14 126.5 9.8 76 127-208 1-78 (481)
56 KOG0144 RNA-binding protein CU 99.0 2.4E-09 5.2E-14 117.5 10.2 83 124-206 30-115 (510)
57 TIGR01648 hnRNP-R-Q heterogene 98.9 2.1E-09 4.6E-14 126.2 10.0 74 127-208 232-307 (578)
58 smart00361 RRM_1 RNA recogniti 98.9 3.2E-09 6.8E-14 91.3 8.4 61 142-202 2-69 (70)
59 KOG0226 RNA-binding proteins [ 98.9 9.5E-09 2.1E-13 106.4 13.2 82 125-206 187-268 (290)
60 KOG0124 Polypyrimidine tract-b 98.9 2.1E-09 4.5E-14 115.4 7.4 96 111-206 186-288 (544)
61 KOG0105 Alternative splicing f 98.9 2.4E-09 5.3E-14 105.9 6.5 77 127-206 5-81 (241)
62 KOG0131 Splicing factor 3b, su 98.9 1.7E-09 3.8E-14 107.0 5.4 82 127-208 95-177 (203)
63 PF13893 RRM_5: RNA recognitio 98.9 6.8E-09 1.5E-13 85.0 8.1 56 145-205 1-56 (56)
64 KOG0109 RNA-binding protein LA 98.9 1.7E-09 3.7E-14 113.6 5.6 72 129-208 3-74 (346)
65 KOG0117 Heterogeneous nuclear 98.8 9.8E-09 2.1E-13 113.3 7.4 77 127-211 258-334 (506)
66 KOG4208 Nucleolar RNA-binding 98.7 3.3E-08 7.2E-13 100.0 7.9 84 125-208 46-130 (214)
67 KOG0109 RNA-binding protein LA 98.7 1.5E-08 3.3E-13 106.6 4.8 80 121-208 71-150 (346)
68 KOG0123 Polyadenylate-binding 98.7 4.1E-08 9E-13 110.4 8.5 75 131-208 79-153 (369)
69 KOG4206 Spliceosomal protein s 98.7 4.3E-08 9.3E-13 100.6 7.5 78 128-208 9-90 (221)
70 KOG4212 RNA-binding protein hn 98.7 6.9E-08 1.5E-12 106.0 9.3 86 127-213 43-129 (608)
71 KOG0110 RNA-binding protein (R 98.6 5.6E-08 1.2E-12 112.7 7.1 86 125-210 610-695 (725)
72 KOG0146 RNA-binding protein ET 98.6 1.2E-07 2.7E-12 98.6 7.2 79 127-206 18-99 (371)
73 KOG0132 RNA polymerase II C-te 98.5 1.1E-07 2.3E-12 111.0 7.2 79 128-212 421-499 (894)
74 KOG0123 Polyadenylate-binding 98.5 1.4E-07 3.1E-12 106.1 7.9 76 129-210 2-77 (369)
75 KOG4205 RNA-binding protein mu 98.5 6.9E-08 1.5E-12 105.5 4.3 81 127-208 5-85 (311)
76 KOG1457 RNA binding protein (c 98.5 8.5E-07 1.8E-11 90.5 11.4 82 126-207 32-117 (284)
77 KOG0110 RNA-binding protein (R 98.5 2.9E-07 6.3E-12 106.9 7.9 78 128-206 515-596 (725)
78 KOG0153 Predicted RNA-binding 98.5 3.6E-07 7.9E-12 98.5 8.0 80 122-207 222-302 (377)
79 KOG4212 RNA-binding protein hn 98.4 5.7E-07 1.2E-11 99.0 7.1 76 125-205 533-608 (608)
80 KOG1548 Transcription elongati 98.4 1.3E-06 2.8E-11 94.3 9.3 92 121-213 127-226 (382)
81 KOG0151 Predicted splicing reg 98.4 1.2E-06 2.5E-11 101.5 9.4 83 125-207 171-256 (877)
82 KOG0533 RRM motif-containing p 98.3 1.4E-06 2.9E-11 92.2 8.3 81 125-206 80-160 (243)
83 KOG4209 Splicing factor RNPS1, 98.3 7.8E-07 1.7E-11 93.9 5.8 81 125-206 98-178 (231)
84 KOG4676 Splicing factor, argin 98.2 2.4E-07 5.2E-12 100.9 0.7 65 127-196 150-214 (479)
85 KOG2416 Acinus (induces apopto 98.2 3.5E-06 7.5E-11 96.1 9.4 84 125-214 441-528 (718)
86 KOG4205 RNA-binding protein mu 98.2 1.3E-06 2.9E-11 95.6 5.7 83 127-210 96-178 (311)
87 KOG0120 Splicing factor U2AF, 98.2 1.7E-06 3.7E-11 99.2 5.8 86 125-210 286-371 (500)
88 KOG0116 RasGAP SH3 binding pro 98.2 3.2E-06 6.9E-11 95.9 7.2 78 128-206 288-365 (419)
89 KOG2253 U1 snRNP complex, subu 98.1 8.4E-05 1.8E-09 86.5 17.6 35 600-635 513-547 (668)
90 KOG4454 RNA binding protein (R 98.1 1.4E-06 3.1E-11 88.8 2.5 78 127-206 8-85 (267)
91 PF04059 RRM_2: RNA recognitio 98.0 5.8E-05 1.2E-09 69.3 10.3 82 129-210 2-89 (97)
92 KOG4660 Protein Mei2, essentia 98.0 7.2E-06 1.6E-10 93.5 5.3 71 126-201 73-143 (549)
93 KOG0106 Alternative splicing f 97.9 8.8E-06 1.9E-10 84.5 4.3 71 129-207 2-72 (216)
94 KOG1924 RhoA GTPase effector D 97.9 3.6E-05 7.9E-10 90.2 9.3 9 126-134 639-647 (1102)
95 KOG1995 Conserved Zn-finger pr 97.9 3.2E-05 7E-10 84.4 7.6 88 126-213 64-159 (351)
96 KOG1924 RhoA GTPase effector D 97.8 7E-05 1.5E-09 87.9 10.2 8 451-458 958-965 (1102)
97 KOG1029 Endocytic adaptor prot 97.7 0.011 2.3E-07 70.1 26.1 6 280-285 248-253 (1118)
98 KOG4307 RNA binding protein RB 97.7 0.0012 2.7E-08 77.0 17.4 76 128-203 867-942 (944)
99 KOG4849 mRNA cleavage factor I 97.6 0.0001 2.2E-09 79.6 7.0 91 126-216 78-170 (498)
100 KOG1190 Polypyrimidine tract-b 97.6 0.00052 1.1E-08 75.9 12.1 74 128-206 297-371 (492)
101 KOG4676 Splicing factor, argin 97.6 0.00023 5E-09 78.2 8.5 77 129-206 8-87 (479)
102 KOG0147 Transcriptional coacti 97.5 3.8E-05 8.1E-10 87.7 1.9 81 125-206 176-256 (549)
103 KOG4211 Splicing factor hnRNP- 97.5 0.00021 4.6E-09 80.8 7.3 80 127-210 9-88 (510)
104 PF11608 Limkain-b1: Limkain b 97.4 0.00047 1E-08 61.1 7.1 68 129-206 3-75 (90)
105 KOG1457 RNA binding protein (c 97.4 0.00014 3E-09 74.8 4.0 66 127-196 209-274 (284)
106 KOG1456 Heterogeneous nuclear 97.3 0.0046 1E-07 67.9 14.5 81 125-210 284-365 (494)
107 KOG4210 Nuclear localization s 97.2 0.00019 4E-09 78.4 2.7 78 128-206 184-262 (285)
108 COG5175 MOT2 Transcriptional r 97.2 0.00099 2.2E-08 72.0 7.7 88 128-215 114-210 (480)
109 KOG4206 Spliceosomal protein s 97.1 0.0022 4.8E-08 66.5 9.1 77 125-206 143-220 (221)
110 KOG2314 Translation initiation 97.1 0.0014 3.1E-08 75.0 8.1 77 127-204 57-140 (698)
111 KOG0106 Alternative splicing f 96.8 0.00096 2.1E-08 69.5 3.4 70 125-202 96-165 (216)
112 KOG3152 TBP-binding protein, a 96.7 0.0011 2.4E-08 69.6 3.5 72 128-199 74-157 (278)
113 KOG4211 Splicing factor hnRNP- 96.6 0.0067 1.5E-07 69.0 8.6 85 128-214 103-188 (510)
114 PF08777 RRM_3: RNA binding mo 96.6 0.0081 1.8E-07 56.1 7.7 73 128-206 1-78 (105)
115 KOG0129 Predicted RNA-binding 96.4 0.0059 1.3E-07 69.9 7.0 64 125-188 367-431 (520)
116 PF08952 DUF1866: Domain of un 96.4 0.014 2.9E-07 57.4 8.3 78 127-213 26-112 (146)
117 KOG4307 RNA binding protein RB 96.3 0.039 8.4E-07 65.0 12.4 77 128-206 311-387 (944)
118 KOG1855 Predicted RNA-binding 96.2 0.0062 1.3E-07 68.1 5.4 77 117-193 220-309 (484)
119 KOG1365 RNA-binding protein Fu 95.6 0.04 8.6E-07 61.0 8.3 85 128-213 280-367 (508)
120 KOG0120 Splicing factor U2AF, 95.5 0.03 6.5E-07 65.1 7.5 64 144-207 425-491 (500)
121 PF05172 Nup35_RRM: Nup53/35/4 95.5 0.041 9E-07 51.0 6.9 76 128-205 6-89 (100)
122 KOG1365 RNA-binding protein Fu 95.3 0.026 5.6E-07 62.4 5.5 79 128-208 161-243 (508)
123 KOG2193 IGF-II mRNA-binding pr 95.1 0.026 5.7E-07 63.0 4.9 76 129-210 2-78 (584)
124 KOG0112 Large RNA-binding prot 95.1 0.044 9.6E-07 66.4 7.1 77 125-207 452-530 (975)
125 KOG0128 RNA-binding protein SA 95.0 0.003 6.4E-08 75.8 -2.9 76 127-202 666-741 (881)
126 KOG1548 Transcription elongati 95.0 0.062 1.3E-06 59.0 7.3 75 126-204 263-348 (382)
127 KOG1190 Polypyrimidine tract-b 94.9 0.045 9.8E-07 61.1 6.2 77 126-206 412-489 (492)
128 KOG0128 RNA-binding protein SA 94.8 0.011 2.4E-07 71.0 1.3 79 128-207 736-814 (881)
129 PF14605 Nup35_RRM_2: Nup53/35 94.6 0.068 1.5E-06 43.7 5.1 52 129-187 2-53 (53)
130 KOG0129 Predicted RNA-binding 94.6 0.46 9.9E-06 55.0 13.3 65 126-190 257-326 (520)
131 KOG2891 Surface glycoprotein [ 94.6 5.1 0.00011 43.1 19.9 88 128-215 149-275 (445)
132 KOG0115 RNA-binding protein p5 94.4 0.031 6.7E-07 59.1 3.2 77 129-206 32-112 (275)
133 KOG1456 Heterogeneous nuclear 94.3 0.096 2.1E-06 57.9 6.8 73 133-210 127-201 (494)
134 KOG2068 MOT2 transcription fac 93.8 0.028 6.1E-07 61.6 1.5 88 128-216 77-171 (327)
135 KOG1996 mRNA splicing factor [ 93.6 0.16 3.5E-06 54.6 6.8 63 144-206 302-365 (378)
136 KOG0105 Alternative splicing f 93.1 0.26 5.7E-06 49.9 7.0 70 126-202 113-184 (241)
137 PTZ00266 NIMA-related protein 92.9 0.41 8.9E-06 60.7 10.0 23 740-762 873-895 (1021)
138 KOG4285 Mitotic phosphoprotein 92.7 4 8.6E-05 44.6 15.5 73 130-210 199-272 (350)
139 KOG4849 mRNA cleavage factor I 92.1 0.91 2E-05 50.0 10.0 26 131-156 348-373 (498)
140 KOG4574 RNA-binding protein (c 91.2 0.65 1.4E-05 56.4 8.4 74 128-207 298-373 (1007)
141 KOG1923 Rac1 GTPase effector F 90.9 0.79 1.7E-05 55.3 8.7 9 130-138 387-395 (830)
142 KOG0112 Large RNA-binding prot 90.1 0.079 1.7E-06 64.3 -0.4 77 127-204 371-447 (975)
143 KOG4246 Predicted DNA-binding 89.9 3 6.5E-05 50.7 12.2 13 1-13 1-13 (1194)
144 KOG4661 Hsp27-ERE-TATA-binding 89.3 6.8 0.00015 45.9 14.1 6 144-149 236-241 (940)
145 PF15023 DUF4523: Protein of u 89.0 1.5 3.2E-05 43.1 7.3 74 125-206 83-160 (166)
146 KOG2202 U2 snRNP splicing fact 88.6 0.24 5.2E-06 52.7 1.9 62 144-206 84-146 (260)
147 KOG4660 Protein Mei2, essentia 85.7 1.5 3.3E-05 51.2 6.3 79 128-206 388-471 (549)
148 KOG2591 c-Mpl binding protein, 85.4 6.8 0.00015 46.0 11.2 68 127-201 174-245 (684)
149 PF10309 DUF2414: Protein of u 85.0 3.7 7.9E-05 34.9 6.7 55 128-190 5-62 (62)
150 KOG4210 Nuclear localization s 84.2 0.76 1.7E-05 50.5 3.0 80 126-206 86-166 (285)
151 PF04847 Calcipressin: Calcipr 83.7 2.7 5.8E-05 43.3 6.5 63 142-210 9-73 (184)
152 PF03467 Smg4_UPF3: Smg-4/UPF3 83.6 1.5 3.3E-05 44.8 4.6 80 127-206 6-96 (176)
153 PF08675 RNA_bind: RNA binding 83.4 3.5 7.5E-05 37.1 6.1 54 130-191 10-63 (87)
154 PF03880 DbpA: DbpA RNA bindin 82.4 4.9 0.00011 34.9 6.8 67 130-205 2-74 (74)
155 KOG2135 Proteins containing th 82.1 0.79 1.7E-05 52.5 2.1 73 128-207 372-445 (526)
156 KOG4672 Uncharacterized conser 81.5 6.8 0.00015 44.4 8.9 7 19-25 302-308 (487)
157 TIGR03687 pupylate_cterm ubiqu 80.9 2.3 5E-05 31.1 3.3 24 799-822 4-27 (33)
158 KOG0226 RNA-binding proteins [ 80.4 3.2 7E-05 44.3 5.7 74 130-204 98-174 (290)
159 PF07576 BRAP2: BRCA1-associat 78.4 15 0.00033 34.7 9.1 67 129-197 14-81 (110)
160 KOG4364 Chromatin assembly fac 76.9 64 0.0014 39.1 15.3 6 627-632 559-564 (811)
161 KOG2888 Putative RNA binding p 75.9 2.4 5.2E-05 46.6 3.3 13 285-297 226-238 (453)
162 PF11517 Nab2: Nuclear abundan 70.0 23 0.00049 32.8 7.5 75 762-836 7-83 (107)
163 KOG0804 Cytoplasmic Zn-finger 64.9 19 0.00042 41.5 7.5 67 128-197 74-142 (493)
164 KOG1984 Vesicle coat complex C 63.2 35 0.00075 42.6 9.5 26 181-206 339-367 (1007)
165 KOG1830 Wiskott Aldrich syndro 62.8 62 0.0013 37.2 10.8 7 182-188 458-464 (518)
166 COG5178 PRP8 U5 snRNP spliceos 62.2 6.4 0.00014 49.6 3.3 31 128-158 72-102 (2365)
167 KOG2318 Uncharacterized conser 59.4 31 0.00066 41.1 7.9 74 125-198 171-296 (650)
168 PF11600 CAF-1_p150: Chromatin 58.8 2.4E+02 0.0052 29.7 15.8 7 503-509 166-172 (216)
169 KOG2375 Protein interacting wi 57.9 48 0.001 41.0 9.5 22 8-29 546-568 (756)
170 KOG4246 Predicted DNA-binding 55.3 4.9 0.00011 49.0 0.8 12 208-219 194-205 (1194)
171 PF11767 SET_assoc: Histone ly 53.4 51 0.0011 28.4 6.4 55 139-202 11-65 (66)
172 PF03276 Gag_spuma: Spumavirus 50.7 39 0.00084 40.1 6.9 42 145-187 294-337 (582)
173 KOG3702 Nuclear polyadenylated 49.1 20 0.00043 43.2 4.4 63 765-827 22-84 (681)
174 PF05639 Pup: Pup-like protein 48.7 5.9 0.00013 34.2 0.1 25 798-822 39-63 (69)
175 KOG2888 Putative RNA binding p 47.2 20 0.00043 39.8 3.7 8 207-214 171-178 (453)
176 KOG1984 Vesicle coat complex C 45.6 1.5E+02 0.0032 37.4 10.9 9 785-793 990-998 (1007)
177 KOG4454 RNA binding protein (R 44.5 5.8 0.00013 41.6 -0.7 76 126-202 78-157 (267)
178 KOG3671 Actin regulatory prote 44.4 2.6E+02 0.0056 33.2 12.0 27 129-155 482-508 (569)
179 KOG1925 Rac1 GTPase effector F 43.9 69 0.0015 37.6 7.4 27 125-151 303-329 (817)
180 PHA03378 EBNA-3B; Provisional 43.0 1.4E+02 0.0029 36.6 9.8 9 141-149 821-829 (991)
181 PF05518 Totivirus_coat: Totiv 42.9 1.6E+02 0.0036 36.5 10.8 21 4-24 624-644 (759)
182 KOG4483 Uncharacterized conser 41.7 3.3E+02 0.0071 31.4 12.0 55 128-189 391-446 (528)
183 KOG3938 RGS-GAIP interacting p 40.2 33 0.00071 37.2 4.0 57 770-826 263-322 (334)
184 KOG0670 U4/U6-associated splic 39.0 5.1 0.00011 47.1 -2.3 26 481-506 271-296 (752)
185 KOG0162 Myosin class I heavy c 37.7 1.9E+02 0.0041 35.8 9.9 8 151-158 1071-1078(1106)
186 COG0724 RNA-binding proteins ( 35.8 34 0.00073 35.1 3.4 70 125-194 222-291 (306)
187 cd07354 HN_L-delphilin-R1_like 35.3 73 0.0016 28.5 4.7 49 772-821 9-60 (80)
188 KOG4410 5-formyltetrahydrofola 35.1 1.6E+02 0.0035 32.3 8.1 47 128-180 330-377 (396)
189 PF13797 Post_transc_reg: Post 34.3 96 0.0021 28.1 5.5 58 763-820 5-67 (87)
190 KOG3671 Actin regulatory prote 34.1 2.3E+02 0.005 33.5 9.7 6 153-158 479-484 (569)
191 PF09707 Cas_Cas2CT1978: CRISP 33.5 65 0.0014 29.2 4.2 49 128-179 25-73 (86)
192 KOG3054 Uncharacterized conser 32.9 1.3E+02 0.0028 32.4 6.8 9 632-640 257-265 (299)
193 KOG2375 Protein interacting wi 32.9 1.5E+02 0.0032 37.0 8.3 10 14-23 556-565 (756)
194 KOG2295 C2H2 Zn-finger protein 32.0 8.1 0.00018 45.4 -2.2 69 128-196 231-299 (648)
195 PRK11901 hypothetical protein; 31.8 5.5E+02 0.012 29.0 11.8 61 128-193 245-307 (327)
196 KOG2135 Proteins containing th 29.5 59 0.0013 38.0 4.0 63 765-827 7-73 (526)
197 KOG2193 IGF-II mRNA-binding pr 28.8 4 8.8E-05 46.3 -5.1 77 126-206 78-155 (584)
198 PF04625 DEC-1_N: DEC-1 protei 28.5 2.9E+02 0.0062 30.9 8.8 9 285-293 295-303 (407)
199 KOG4019 Calcineurin-mediated s 28.3 37 0.0008 34.9 2.0 78 127-210 9-92 (193)
200 KOG1985 Vesicle coat complex C 26.2 3.3E+02 0.0071 34.3 9.6 7 174-180 231-237 (887)
201 smart00596 PRE_C2HC PRE_C2HC d 24.8 86 0.0019 27.3 3.3 61 143-206 2-63 (69)
202 KOG0835 Cyclin L [General func 24.0 93 0.002 34.9 4.2 24 171-195 174-197 (367)
203 cd07347 harmonin_N_like N-term 23.6 2.4E+02 0.0053 25.2 6.0 61 768-828 5-65 (78)
204 PF02607 B12-binding_2: B12 bi 23.2 2.2E+02 0.0048 24.3 5.8 51 769-824 3-54 (79)
205 KOG1925 Rac1 GTPase effector F 22.8 1.9E+02 0.004 34.3 6.4 11 628-638 752-762 (817)
206 PRK11558 putative ssRNA endonu 22.8 1.2E+02 0.0026 28.3 4.0 50 128-180 27-76 (97)
207 KOG2072 Translation initiation 22.1 3.1E+02 0.0066 34.6 8.3 8 129-136 422-429 (988)
208 PF03468 XS: XS domain; Inter 22.1 88 0.0019 29.9 3.2 56 130-188 10-75 (116)
209 PF09932 DUF2164: Uncharacteri 21.6 2.1E+02 0.0045 25.4 5.2 64 760-824 8-72 (76)
210 KOG0796 Spliceosome subunit [R 21.3 34 0.00074 38.0 0.3 11 368-378 269-279 (319)
211 PF08926 DUF1908: Domain of un 21.2 2E+02 0.0043 31.6 5.9 28 801-828 190-224 (282)
212 KOG0905 Phosphoinositide 3-kin 21.2 3.6E+02 0.0079 35.4 8.8 68 727-794 841-930 (1639)
213 PF15473 PCNP: PEST, proteolyt 20.8 36 0.00079 33.7 0.3 19 602-620 88-106 (150)
214 KOG3895 Synaptic vesicle prote 20.6 4.4E+02 0.0094 30.1 8.4 97 28-125 390-488 (488)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-67 Score=591.87 Aligned_cols=619 Identities=30% Similarity=0.459 Sum_probs=386.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+..+||||||...|....+..++..||.|.+|+.+. ||||.|..+..+.+|+..|+-..++|..+.++.-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 467999999999999999999999999999998754 99999999999999999999999999998887642
Q ss_pred hhhHHHHHHHhhHhhhhhhhhccccCCCCcccccccccCCCCC-CCCccccCcCCCCCCCCCCCCCccchhhHhhhHHHH
Q 003161 207 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 285 (843)
Q Consensus 207 ~k~le~~~~kk~~~~k~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~d~~~~e~~~i~~~g~~~eed~e~D~~~~ 285 (843)
+.... ..+.+.......... ++... ...+. .......++-..++++.+.+.........++|...+
T Consensus 110 q~~~n----~~k~~~~~~~~~~~f--------~p~~s-rr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~d~h~~ 176 (668)
T KOG2253|consen 110 QTIEN----ADKEKSIANKESHKF--------VPSSS-RRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEADDHCL 176 (668)
T ss_pred hhhcC----ccccccchhhhhccc--------CCchh-HHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence 11110 000000000000000 00000 00000 000111111123355566666666666677777777
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCcccccccchhhhccccccccCcccccCCCCCCCCCC
Q 003161 286 EKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSSPD 365 (843)
Q Consensus 286 e~ie~~~ee~~~~~~~p~p~~~~~~~g~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~~~~e~~s~~r~re~~R~~~~~~~ 365 (843)
+.+.+.++.+...+..+.+...+ .+....+..+.+..+ +.. .++.+... +.+
T Consensus 177 e~~~~~~~s~~~~~~~~~~~~~~---------~e~~~~s~~~~s~td-----s~~-------~~d~~~~~-------s~~ 228 (668)
T KOG2253|consen 177 ELEKTETESNSALSKEAESKKSP---------FEDTKDSKRSFSSTD-----SGS-------ESDSAEVN-------SSS 228 (668)
T ss_pred HHHHhhcccccccCcccccccCc---------hhhhchhhhhhcccC-----ccc-------cchhhhhc-------ccc
Confidence 77777776554432222211111 000000000000000 000 00000000 000
Q ss_pred CcccccccCCchhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 003161 366 RSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKE 445 (843)
Q Consensus 366 r~r~r~rr~r~r~Rer~rerere~~r~~rererer~r~~r~~~~~~re~er~~~er~r~~e~rER~re~~r~~e~erere 445 (843)
+++ .+++.+.+.|.|...|.+++.+.....+..|++|...++..++|.+|+.|++.|+.||+.+++++++++.++..
T Consensus 229 ~n~---~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke~~ke~~ 305 (668)
T KOG2253|consen 229 LNY---CRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKERLKEKS 305 (668)
T ss_pred ccc---chhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 12222222222222233333222223356677788888999999999999999999999997766666655555
Q ss_pred HH------HHHHHHhhhcccchhhhhHhhhhhhHHHHHHHhhhhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003161 446 RE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDAL 519 (843)
Q Consensus 446 re------r~r~~e~~~~~dder~~~~k~~r~~~~~~r~~~r~re~e~d~~dr~re~eE~~e~~r~~~e~~~~~~~~~~~ 519 (843)
+. .+++++|++||||++++ .+||+++++..|++++.+|.|+|.+||.+|++|.+|++|+..++..+....++.
T Consensus 306 r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~~~~e~~ 384 (668)
T KOG2253|consen 306 RQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAEDPSAEEE 384 (668)
T ss_pred HHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccccchHHH
Confidence 43 35788899999999766 699999999999999999999999999999999999999998887655554444
Q ss_pred hhccccccCCCcc----ccccccccCCcccCcCCCCcccccCCCCCCCCCCCCCCCCCCccccccccccCCCCCcccccc
Q 003161 520 KLLSDNAVNGSLA----EESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQSGNVPARKLGF 595 (843)
Q Consensus 520 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (843)
+.+.+......++ ....++.........+.+.+++..|+.... .+..+-.+.+.- ....-..+|...+++
T Consensus 385 r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~ee--e~~s~r~~~~~d----~~~~i~~~ps~~~~s 458 (668)
T KOG2253|consen 385 RNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDEE--EIKSQRDDYKPD----ENDHISHAPSASLAS 458 (668)
T ss_pred HHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccchh--hcccchhhhhhh----hhhhhhcCchhhhhh
Confidence 4444433333322 222233333333334444445544411111 111111111000 012334567888999
Q ss_pred cccCCCcccccCCCCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhhccCcchhhchHH
Q 003161 596 GLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAE 675 (843)
Q Consensus 596 ~~~~~~k~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 675 (843)
|+++++.+...+.+|-.-++..+++..++..++||.|+.....+ .|++.+.++.++ |-+-.+.+
T Consensus 459 ~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~---kk~~~~~v-------- 522 (668)
T KOG2253|consen 459 GLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAK---KKLPETGV-------- 522 (668)
T ss_pred hccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCcccccc---ccCCCccc--------
Confidence 99999999999999987665555677788899999998844332 222222211111 11111111
Q ss_pred HHhhhhhccccchhhhcccccccccchhhhhhhhcccccccccccccccCchhhhhhhHHhhhhcCCCCchhhhceeccc
Q 003161 676 RERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINW 755 (843)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~~k~~lf~~~i~w 755 (843)
.+....+|+- -+.+ + ++.+.+.++.......++...-|.+++++||.+||++|++||+|+|+|
T Consensus 523 -~~~~~d~Dk~-------------v~~~--k-k~vp~dyd~n~~~~~~~~~ndeK~~~~ksLI~tIP~~keeLf~~pidw 585 (668)
T KOG2253|consen 523 -FREDDDEDKN-------------VHEK--K-KLVPLDYDRNQARAHSGESNDEKRKRIKSLIETIPTEKEELFAYPIDW 585 (668)
T ss_pred -ccccCCcccc-------------cchh--h-hcccccCChhhcccccCCcchhHHHHHHhhcccCCcchHHHhhCcccH
Confidence 1111111111 1111 1 455444444211222222212233479999999999999999999999
Q ss_pred cccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 003161 756 AVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVET 835 (843)
Q Consensus 756 ~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~~~~~ 835 (843)
+.||..+|+++|+|||+|||+||||++|++||||||++|+.|.+||+||.+|.+|||+||++||+|||||||||+.+++.
T Consensus 586 ~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWRlLiyel~ar~~ 665 (668)
T KOG2253|consen 586 DELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMWRLLIYELGARKL 665 (668)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 003161 836 GLA 838 (843)
Q Consensus 836 gl~ 838 (843)
||+
T Consensus 666 g~~ 668 (668)
T KOG2253|consen 666 GLT 668 (668)
T ss_pred cCC
Confidence 985
No 2
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.82 E-value=6.2e-20 Score=202.86 Aligned_cols=83 Identities=14% Similarity=0.296 Sum_probs=78.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..+++|||.+|...+...+|+.||++||+|+.++||++..+...+|||||+|.+..+|.+||..||.++|+|+.|.|..|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44789999999999999999999999999999999999888889999999999999999999999999999999999887
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 644
No 3
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.74 E-value=1.7e-18 Score=151.86 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccC-----ChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 003161 765 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 832 (843)
Q Consensus 765 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~~ 832 (843)
++|||||.+||+||||.+|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988754
No 4
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=1.9e-17 Score=144.05 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=67.6
Q ss_pred hhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003161 761 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 831 (843)
Q Consensus 761 ~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~ 831 (843)
.+..++|+|||+++|++|||++|++||+||+++|++|.+|+.++.+|..+++.+|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.64 E-value=5.7e-17 Score=167.84 Aligned_cols=92 Identities=21% Similarity=0.491 Sum_probs=80.4
Q ss_pred CchhhhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhc--cCChHHHHHHHHHhhh-HHHHHHHH
Q 003161 744 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVL 820 (843)
Q Consensus 744 ~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-~~a~~fv~ 820 (843)
-..+.+...||...|+ .+.|+|||+++|+|+||+||++||+||+++|.+ ..+|..|+++|++||. .+|..||.
T Consensus 26 KF~~~lekkVDmsKvn----leVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmg 101 (354)
T KOG2146|consen 26 KFPACLEKKVDMSKVN----LEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMG 101 (354)
T ss_pred ccHHHHhhhcchhhcc----hhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHH
Confidence 3557777788887774 456799999999999999999999999999975 6799999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 003161 821 KMWRMLIFEIKKVETGLAL 839 (843)
Q Consensus 821 ~lwrllife~~~~~~gl~~ 839 (843)
+||-|||-+.-+-.+||..
T Consensus 102 eLW~LliS~a~~s~~giP~ 120 (354)
T KOG2146|consen 102 ELWSLLISEASQSQYGIPA 120 (354)
T ss_pred HHHHHHHhhccccccCCch
Confidence 9999999877777777653
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=8.8e-15 Score=162.76 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=79.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..+.+|||+|||+.+++++|..+|++||.|.+++|++|+.||.++|||||+|.+.++|.+||..|||+.|+|+.|.|+|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 865
No 7
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=6.6e-15 Score=144.38 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|..||.|..|.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 74
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.4e-14 Score=147.41 Aligned_cols=95 Identities=17% Similarity=0.369 Sum_probs=90.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.+||||+-|++.+++..|+..|..||.|..+.||+|..||+++|||||+|.+..+...|....+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhH
Q 003161 205 ATREYLERYVDKKTE 219 (843)
Q Consensus 205 A~~k~le~~~~kk~~ 219 (843)
-....+..|...+..
T Consensus 178 ERgRTvkgW~PRRLG 192 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLG 192 (335)
T ss_pred ccccccccccccccc
Confidence 999999999987754
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=2.1e-13 Score=151.82 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=79.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+|+++|+.+|..||.|.+|+|+.|+.+|+++|||||+|.+.++|.+||..|||..|.+++|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cch
Q 003161 205 ATR 207 (843)
Q Consensus 205 A~~ 207 (843)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 864
No 10
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.6e-14 Score=146.18 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=83.2
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003161 119 PTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (843)
Q Consensus 119 p~~~~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr 198 (843)
+......+.+|+|||-.||...++.+|..+|-.||.|++.+|..|+.|+.++|||||.|.++.+|..||.+|||+.|+-+
T Consensus 276 ~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 276 PQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 34444567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccchh
Q 003161 199 ELMVDQATRE 208 (843)
Q Consensus 199 ~L~V~~A~~k 208 (843)
+|+|....+|
T Consensus 356 RLKVQLKRPk 365 (371)
T KOG0146|consen 356 RLKVQLKRPK 365 (371)
T ss_pred hhhhhhcCcc
Confidence 9999876654
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=143.49 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 123 ~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
+.....+.|||+|||+...+.+|+.+|.+||+|.+|.||.+ ...+||||||+|+++++|.+|-..|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34456789999999999999999999999999999999998 6779999999999999999999999999999999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
+.|+.+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999976
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=7.2e-13 Score=135.85 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=80.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
-...++|-|.||+.++++.+|..||..||.|..+.|.+|+.||.++|||||+|.+.++|.+||..|||+-+++-.|.|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9864
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=3e-13 Score=150.44 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=78.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++.+|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.8e-13 Score=127.74 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=77.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..++|||||||++.+++++|.++|+.||.|..|-+-.|+.+-.++|||||+|.+.++|..||..+||+.|+.++|.|+|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.44 E-value=4.6e-13 Score=113.09 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.7
Q ss_pred EEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 131 LfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
|||+|||..+++.+|+.+|+.||.|..+.++.+ .+|..+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=6e-13 Score=146.42 Aligned_cols=91 Identities=19% Similarity=0.360 Sum_probs=83.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~--e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
....+||||||++.+++++|..+|+.||.|..|.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3468999999999999999999999999999999994 578 99999999987 78999999999999999999999
Q ss_pred ccchhhHHHHHHHhhHh
Q 003161 204 QATREYLERYVDKKTEN 220 (843)
Q Consensus 204 ~A~~k~le~~~~kk~~~ 220 (843)
.|.+.|+......+...
T Consensus 84 KAKP~YLeRLkrEReea 100 (759)
T PLN03213 84 KAKEHYLARLKREWEAA 100 (759)
T ss_pred eccHHHHHHHHHHHHHh
Confidence 99999999888766544
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.2e-12 Score=130.73 Aligned_cols=82 Identities=22% Similarity=0.325 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+.+|||-||.+.+++.-|.++|+.||.|..|+|++|..|.+++|||||++.+.++|..||..|||+.++++.|.|.|.+
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.7e-12 Score=132.85 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
+...++||||+|+|.+..+.|+.+|.+||.|+.+.||.|+.||+++|||||+|.+.++|.+|+.. ..-.|+||+-.|+.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34578999999999999999999999999999999999999999999999999999999999983 34678999999988
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
|.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 76
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=4.1e-12 Score=149.09 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=78.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+||++.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|+++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999888
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.32 E-value=3.8e-12 Score=149.36 Aligned_cols=81 Identities=28% Similarity=0.445 Sum_probs=77.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++||||||++.+++++|+.+|..||.|.+|.|+.|+.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=4.2e-12 Score=141.81 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=78.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+-..|+|.||||.|...+|..+|+.||.|..|.|++.+ .|+.+|||||.|....+|..||..|||..|+||+|.|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 36789999999999999999999999999999999775 67777999999999999999999999999999999999999
Q ss_pred hhhHH
Q 003161 207 REYLE 211 (843)
Q Consensus 207 ~k~le 211 (843)
.+...
T Consensus 195 ~Kd~y 199 (678)
T KOG0127|consen 195 DKDTY 199 (678)
T ss_pred ccccc
Confidence 87553
No 22
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.8e-13 Score=131.58 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=76.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..+.-|||||||+..|+.+|..+|+.||.|+.|.+++|..||+++||||+.|++..+..-|+..|||..|.||.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999643
No 23
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.7e-12 Score=135.86 Aligned_cols=90 Identities=20% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.++.+.|||..|++.+|+++|.-+|+.||+|.+|.||+|..||.+..||||+|.+.++|.+|.-.|++..|+.+.|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHH
Q 003161 205 ATREYLERYV 214 (843)
Q Consensus 205 A~~k~le~~~ 214 (843)
++.-.-..|.
T Consensus 316 SQSVsk~k~r 325 (479)
T KOG0415|consen 316 SQSVSKVKYR 325 (479)
T ss_pred hhhhhhhhcc
Confidence 8855444454
No 24
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=1e-11 Score=105.79 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=65.2
Q ss_pred EEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 131 LfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
|||+|||+.++.++|..+|+.||.|..+.++.++. |.++|+|||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999975 99999999999999999999999999999999884
No 25
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.29 E-value=8.8e-12 Score=131.46 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=70.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.++|||+||++.+++.+|+.||+.||.|..|.|+.+. .++|||||+|.+..+|..||. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5799999999999999999999999999999998874 357999999999999999996 99999999999999865
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=2.5e-11 Score=141.96 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=78.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|..+|..||.|..+.|+.++.+|.++|||||+|.+...|..||..|||..|+|+.|.|.+|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 63
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7.1e-12 Score=130.06 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
..-||||.|...++.+.|++.|.+||.|..++|++|..|++++|||||.|-+.++|.+||..|||.-|++|.|+.+||+.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 003161 208 EY 209 (843)
Q Consensus 208 k~ 209 (843)
|-
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 75
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.26 E-value=1.4e-11 Score=137.17 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=76.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V~~ 204 (843)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.+..+|+++|||||+|.+.++|.+||..||+..|.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 36789999999999999999999999999999999998899999999999999999999999999999875 7899998
Q ss_pred cch
Q 003161 205 ATR 207 (843)
Q Consensus 205 A~~ 207 (843)
|..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 874
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.9e-11 Score=134.22 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=77.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~~ 204 (843)
+.+|-||||.||.++.+++|.-||.+.|+|-.++++.|+.+|.++|||||+|.+.+.|+.||..||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999997 99999876
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 55
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=2e-11 Score=140.85 Aligned_cols=79 Identities=28% Similarity=0.505 Sum_probs=77.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||+.|.|+.|.|.+|.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999899999999999999999999999999999999999999987
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=124.04 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=77.0
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
-++|-|-||.+-++.++|+.+|.+||.|..|.|..|+.|+.++|||||-|....+|+.|+.+|+|.+|+|+.|.|.+|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998876
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.22 E-value=6.1e-11 Score=98.81 Aligned_cols=72 Identities=31% Similarity=0.551 Sum_probs=68.1
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
+|||+|||..++..+|+.+|..||.|..+.++.++ |.++|||||+|.+...|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 8899999999999999999999999999999999873
No 33
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=1.8e-11 Score=138.66 Aligned_cols=80 Identities=36% Similarity=0.626 Sum_probs=78.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..+.|++|+|+|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999844
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.22 E-value=3.1e-11 Score=143.17 Aligned_cols=78 Identities=22% Similarity=0.408 Sum_probs=75.7
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
+|||||||+.+|+++|+.+|+.||.|.+|+|++|..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999764
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=4.9e-11 Score=124.07 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=70.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+.+|||+||++.+|+.+|+.||+.||.|..|.|+.+ +...|||||+|.++.+|..||. |||..|.|++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 99999999999996654
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=3.8e-11 Score=142.39 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=78.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+||++.+++++|+.+|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred chhh
Q 003161 206 TREY 209 (843)
Q Consensus 206 ~~k~ 209 (843)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8653
No 37
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.3e-11 Score=118.37 Aligned_cols=75 Identities=32% Similarity=0.472 Sum_probs=70.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..+.||||||+..++..+|..+|..||.|.+|-|..+ +.|||||+|+++.+|..|+..|||..|.|..|.|...+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999999888654 57999999999999999999999999999999999877
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=6e-11 Score=123.58 Aligned_cols=80 Identities=28% Similarity=0.470 Sum_probs=77.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999764
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=8.1e-11 Score=121.37 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=80.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|.|..||.++|.++|+.+|+..|.|.+|++++|+.+|.+.|||||.|.++.+|.+||..|||..|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|.+.
T Consensus 118 ARPS 121 (360)
T KOG0145|consen 118 ARPS 121 (360)
T ss_pred ccCC
Confidence 9864
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.19 E-value=5.8e-11 Score=139.23 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~~A 205 (843)
..++|||+|||+.+++++|..+|+.||.|..|+|+.| .+|+++|||||+|.+.++|..||..|||..|. |+.|.|+++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999999996 888888765
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 4
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=124.97 Aligned_cols=84 Identities=25% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++||||+|...|++.-|...|-.||.|..+.++.|-.+++++|||||+|...++|.+||..||+.+|.||.|+|++|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhH
Q 003161 207 REYL 210 (843)
Q Consensus 207 ~k~l 210 (843)
+-.+
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 6543
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.18 E-value=2.9e-10 Score=132.49 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCCcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 125 ~~~~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
..+.++|||+||++ .+|+++|+.+|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|++|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34578999999998 69999999999999999999998862 6999999999999999999999999999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
++...
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 88644
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.17 E-value=8.2e-11 Score=135.87 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||. |||..|.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999998 999999999999987
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
+.
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 64
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.17 E-value=1.2e-10 Score=96.57 Aligned_cols=71 Identities=32% Similarity=0.541 Sum_probs=67.6
Q ss_pred EccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 133 VgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999999873
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=3.4e-11 Score=118.93 Aligned_cols=80 Identities=21% Similarity=0.459 Sum_probs=77.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
...|||||||+..+++..|.++|-++|+|+.+++.+|+.+..++|||||+|.+.++|.-||..||...|.|++|+|+.+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999877
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=7e-11 Score=111.34 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=78.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+-.|||.++...+|+++|...|+.||.|+.+.+-.|+.||-.+||++|+|++...|+.||..|||..|.|++|.|+|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
-+
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 44
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.5e-10 Score=118.77 Aligned_cols=76 Identities=25% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+..|+||||||+..+|++.|+..|+.||.|..|+|..+ +||+||.|++.++|.+||-.+||..|+|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999887 59999999999999999999999999999999999
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
-.
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 76
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=7e-11 Score=126.43 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=75.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
-|.||||.|.+.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|.-|+..|||..++||.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999643
No 49
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.08 E-value=8.1e-10 Score=92.46 Aligned_cols=74 Identities=28% Similarity=0.480 Sum_probs=69.0
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
+|||+|||..++.++|..+|..||.|..+.+..++. +.+.|+|||+|.+.++|..|+..++|..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999998854 47889999999999999999999999999999999864
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=4.7e-10 Score=122.91 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+.+.+|||++||....+.+|...|..||.|++.++..|+.||.+++||||+|++..+|..||..|||+.|++++|+|..
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 501 k~ 502 (510)
T KOG0144|consen 501 KR 502 (510)
T ss_pred ee
Confidence 54
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=98.57 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=71.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.+-|||.|||+.+|.+++..+|+.||.|..++|-. +...+|-|||.|++..+|.+|+..|+|+.+.++.|.|-+.+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 67899999999999999999999999999999844 456689999999999999999999999999999999977764
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=8.4e-10 Score=123.78 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=76.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 200 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L-----nG-~~i~Gr~L 200 (843)
.+.+|||.|||+.||++.|...|++||.|.++.|+.++.||.++|+|||.|.+...|..||.+. .| +.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999977 24 78899999
Q ss_pred EEeccchh
Q 003161 201 MVDQATRE 208 (843)
Q Consensus 201 ~V~~A~~k 208 (843)
.|..|..+
T Consensus 371 kv~~Av~R 378 (678)
T KOG0127|consen 371 KVTLAVTR 378 (678)
T ss_pred eeeeccch
Confidence 99999854
No 53
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.00 E-value=1.6e-09 Score=126.71 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=63.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeE------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 123 ~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~------vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
......++|||||||+.+|+.+|..||..|+.+.. +..+.+...++.+|||||+|.+.++|..||. |||..|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 34556799999999999999999999997521111 1111111235568999999999999999995 9999999
Q ss_pred CeEEEEecc
Q 003161 197 GQELMVDQA 205 (843)
Q Consensus 197 Gr~L~V~~A 205 (843)
|+.|.|...
T Consensus 249 g~~l~v~r~ 257 (509)
T TIGR01642 249 NVFLKIRRP 257 (509)
T ss_pred CceeEecCc
Confidence 999999644
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.99 E-value=4.2e-10 Score=126.90 Aligned_cols=79 Identities=27% Similarity=0.503 Sum_probs=74.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
...||||||.+++++.+|+.+|..||.|..|.+..|..||.++||||++|.+.++|.+|+..|||++|.|+.|+|...+
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3449999999999999999999999999999999998899999999999999999999999999999999999997655
No 55
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.96 E-value=1.5e-09 Score=126.53 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L--nG~~i~Gr~L~V~~ 204 (843)
++++|||+|||+.+++.+|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|.+||..| |+..|+|++|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999854 589999999999999999864 78999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 9754
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.4e-09 Score=117.47 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=75.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eC--CeEE
Q 003161 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQEL 200 (843)
Q Consensus 124 ~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~-i~--Gr~L 200 (843)
.+...-+||||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|.+|+.+||... |- ..+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 34557799999999999999999999999999999999999999999999999999999999999999765 43 4788
Q ss_pred EEeccc
Q 003161 201 MVDQAT 206 (843)
Q Consensus 201 ~V~~A~ 206 (843)
.|.+|-
T Consensus 110 qvk~Ad 115 (510)
T KOG0144|consen 110 QVKYAD 115 (510)
T ss_pred eecccc
Confidence 888876
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.94 E-value=2.1e-09 Score=126.23 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcC--CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~--G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..++|||+||++.+++++|+.+|+.| |.|..|.++. +||||+|.+.++|.+||..|||..|+|+.|.|+|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|.+.
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9864
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.94 E-value=3.2e-09 Score=91.33 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=55.5
Q ss_pred HHHHHHHHh----cCCceeEEE-EeecCCC--CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 142 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 142 e~~L~~lFs----~~G~I~~vk-iv~d~~t--Gk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
+++|+.+|+ .||.|.++. |+.++.+ |.++|||||+|.+.++|..|+..|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 468889998 999999995 7777666 999999999999999999999999999999999986
No 59
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=9.5e-09 Score=106.42 Aligned_cols=82 Identities=17% Similarity=0.396 Sum_probs=76.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
......||+|.|...++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|||..++.++|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 44
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=2.1e-09 Score=115.36 Aligned_cols=96 Identities=27% Similarity=0.496 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCC-------CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHH
Q 003161 111 PVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 183 (843)
Q Consensus 111 ~~~~P~~~p~~~~~-------~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A 183 (843)
.+++|+++|++.+. ....+.|||..+.++.++.+|+.+|..||.|+.|.+.+++.++.++||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 35566666666553 45578999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEeccc
Q 003161 184 LRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 184 ~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..||..||-+.|+|+.|+|..+.
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHhhhcchhhcccceEeccccc
Confidence 99999999999999999995543
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.4e-09 Score=105.92 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=70.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||||||..+.+.+|..||.+||.|..|.+-.. -.+.+||||+|+++.+|.-||..-||+.++|..|.|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4789999999999999999999999999999987433 3456799999999999999999999999999999999987
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.88 E-value=1.7e-09 Score=107.03 Aligned_cols=82 Identities=26% Similarity=0.448 Sum_probs=76.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEE-EEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~v-kiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.+||||||.+.+++..|..+|+.||.+... ++++++.||.++|||||.|.+.+.+.+||..|||..+.+++|.|.+|
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 35899999999999999999999999988763 78899999999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 175 ~k~ 177 (203)
T KOG0131|consen 175 FKK 177 (203)
T ss_pred Eec
Confidence 844
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=6.8e-09 Score=84.98 Aligned_cols=56 Identities=32% Similarity=0.476 Sum_probs=50.9
Q ss_pred HHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 145 L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
|..+|++||.|..+.+.... .|+|||+|.+.++|..|+..|||..|+|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997652 689999999999999999999999999999999986
No 64
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=1.7e-09 Score=113.57 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=68.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
..|||||||..+++..|+.+|.+||+|+.|.||++ ||||..++...|.-||..|||+.|+|..|.|..++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999887754
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=9.8e-09 Score=113.28 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=71.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
....|||.||+.++|++.|+.+|+.||.|..|+.++| ||||.|.+.++|.+|+..+||++|+|..|.|.+|.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3678999999999999999999999999999999877 99999999999999999999999999999999998
Q ss_pred hhhHH
Q 003161 207 REYLE 211 (843)
Q Consensus 207 ~k~le 211 (843)
+-.-+
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 76443
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.70 E-value=3.3e-08 Score=99.99 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=76.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcC-CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~-G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
.....-+||+.||..+.+.+|..+|..| |.|..+++.+++.||.++|||||+|++.+-|.-|-..||++.|+|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3446789999999999999999999988 777888888999999999999999999999999999999999999999998
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
+--+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87765
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.68 E-value=1.5e-08 Score=106.59 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=73.6
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 121 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 121 ~~~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
+.......++||||||.+.|+..+|+..|.+||.|..|.|+.| |+||.|.-.++|..||..|||.+|.|+++
T Consensus 71 SksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 3334556889999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred EEeccchh
Q 003161 201 MVDQATRE 208 (843)
Q Consensus 201 ~V~~A~~k 208 (843)
+|..++.+
T Consensus 143 ~vq~stsr 150 (346)
T KOG0109|consen 143 HVQLSTSR 150 (346)
T ss_pred eeeeeccc
Confidence 99988754
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=4.1e-08 Score=110.37 Aligned_cols=75 Identities=28% Similarity=0.497 Sum_probs=71.4
Q ss_pred EEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 131 LfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
|||.||++.++...|..+|+.||.|++|++..+. +| ++|| ||.|++.++|.+||..|||..+.|+.|.|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 9999999999999999999999999999999994 66 9999 99999999999999999999999999999887754
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.66 E-value=4.3e-08 Score=100.65 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=71.8
Q ss_pred CcEEEEccCCCCCcHHHHHH----HHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 128 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~----lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
..||||.||+..+..++|+. +|+.||.|..|.... +.+.+|-|||.|.+...|..|+..|+|+.+-|++++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999988877 999999999998754 78999999999999999999999999999999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
+|..+
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 99844
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.66 E-value=6.9e-08 Score=106.04 Aligned_cols=86 Identities=24% Similarity=0.411 Sum_probs=77.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHh-cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs-~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..+.+||.|||+.+...+|+.||. +.|.|..|.++.| .+|+++|||.|+|.+++.+++|++.||.+.+.||+|+|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356799999999999999999997 8899999999999 69999999999999999999999999999999999999776
Q ss_pred chhhHHHH
Q 003161 206 TREYLERY 213 (843)
Q Consensus 206 ~~k~le~~ 213 (843)
.-..-..|
T Consensus 122 ~d~q~~~~ 129 (608)
T KOG4212|consen 122 HDEQRDQY 129 (608)
T ss_pred Cchhhhhh
Confidence 64443444
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=5.6e-08 Score=112.66 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=79.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...++.|+|.|||+.++-.+++.+|+.||.|.+|+|+.-...+.++|||||+|-++.+|.+|+.+|.++.|.||.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34478999999999999999999999999999999988755677899999999999999999999999999999999999
Q ss_pred cchhhH
Q 003161 205 ATREYL 210 (843)
Q Consensus 205 A~~k~l 210 (843)
|.....
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 997765
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=98.56 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=72.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-C--eEEEEe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-G--QELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-G--r~L~V~ 203 (843)
..++||||-|...-.+++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||..-. | ..|+|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 8999999999999999999999999997643 4 679999
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
+|-
T Consensus 97 ~AD 99 (371)
T KOG0146|consen 97 FAD 99 (371)
T ss_pred ecc
Confidence 886
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.55 E-value=1.1e-07 Score=110.96 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=73.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
++|||||.|+..+++.+|..+|..||.|.+|.++.. +|||||.+....+|.+||.+|+.+.|.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998765 69999999999999999999999999999999999986
Q ss_pred hhHHH
Q 003161 208 EYLER 212 (843)
Q Consensus 208 k~le~ 212 (843)
+-+..
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 55543
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.4e-07 Score=106.05 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=71.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
..|||| +.+|+..|..+|+.+|.|++++|++|. | +.|||||.|.++.+|.+||..||...|.|++|+|.|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999996 5 9999999999999999999999999999999999999866
Q ss_pred hH
Q 003161 209 YL 210 (843)
Q Consensus 209 ~l 210 (843)
..
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 44
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.51 E-value=6.9e-08 Score=105.54 Aligned_cols=81 Identities=23% Similarity=0.439 Sum_probs=74.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++||||+|+|.++++.|+..|..||.|..|.++.|+.+|.++||+||+|.++..+.++|. ..-+.|+|+.|-+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999988877 55677899999998887
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 55
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.50 E-value=8.5e-07 Score=90.54 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeec-CCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d-~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~---Gr~L~ 201 (843)
...+||||.+||.++..-+|..+|..|-....+.+-.. +...-++-+|||+|.+...|..|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34799999999999999999999999987877766432 211224579999999999999999999999997 88999
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|++|..
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 999873
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=2.9e-07 Score=106.88 Aligned_cols=78 Identities=26% Similarity=0.373 Sum_probs=70.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCC----CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tG----k~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
.++|||.||++.+|...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|+..|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 4459999999999999999999999999999887654 22 355999999999999999999999999999999998
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 876
No 78
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.6e-07 Score=98.54 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHH-HhCCceeCCeEE
Q 003161 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR-LLNKFNIDGQEL 200 (843)
Q Consensus 122 ~~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~-~LnG~~i~Gr~L 200 (843)
++.+..-.+||||+|...+++.+|+.+|.+||.|.++.++.. +|||||+|.+..+|..|.. .+|-+.|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 345666889999999999999999999999999999999775 4699999999999998775 577777899999
Q ss_pred EEeccch
Q 003161 201 MVDQATR 207 (843)
Q Consensus 201 ~V~~A~~ 207 (843)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999986
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.37 E-value=5.7e-07 Score=99.00 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....|+|||.|||+++|...|+.-|..||.|.++.|+. .|+++| .|.|.++++|.+|+..|||..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45589999999999999999999999999999999843 688887 9999999999999999999999999999976
Q ss_pred c
Q 003161 205 A 205 (843)
Q Consensus 205 A 205 (843)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.36 E-value=1.3e-06 Score=94.33 Aligned_cols=92 Identities=26% Similarity=0.409 Sum_probs=78.9
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeE--------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC
Q 003161 121 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 192 (843)
Q Consensus 121 ~~~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~--------vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG 192 (843)
..+.....+.|||.|||..+|.+++..+|++||.|.. |++..+ ..|+.+|-|.|.|.-.+++.-|+..|++
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCc
Confidence 3333445677999999999999999999999998864 788888 4699999999999999999999999999
Q ss_pred ceeCCeEEEEeccchhhHHHH
Q 003161 193 FNIDGQELMVDQATREYLERY 213 (843)
Q Consensus 193 ~~i~Gr~L~V~~A~~k~le~~ 213 (843)
..|.|+.|+|..|.-.+-.+|
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~ 226 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEY 226 (382)
T ss_pred ccccCcEEEEehhhhhhccCc
Confidence 999999999988874444333
No 81
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=101.54 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCC---CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~---tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
++..++||||||++.+++..|...|+.||+|.+++|+..+. ....+.||||.|.+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 55678999999999999999999999999999999988642 234567999999999999999999999999999999
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
+.|+..
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.32 E-value=1.4e-06 Score=92.16 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|+|.||++.|++.+|+++|..||.+..+.|-+++ +|.+.|.|-|.|...++|.+|+..|||+.++|++|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3345899999999999999999999999999999998885 999999999999999999999999999999999998876
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 54
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.30 E-value=7.8e-07 Score=93.93 Aligned_cols=81 Identities=26% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+...+||||+.+.+|...+...|..||.|..+.|..+..+|.++||+||+|.+...+..|+. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4457899999999999999999999999999999999999999999999999999999999999 999999999999987
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 55
No 84
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.25 E-value=2.4e-07 Score=100.89 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=55.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
..++|+|++|+..+...++..+|..+|.|...++ ..|...-||.++|....+...|+. ++|.++.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~----ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHT----ASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhh----hccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3589999999999999999999999999998877 345556688899999999999998 7777665
No 85
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.23 E-value=3.5e-06 Score=96.15 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHh-cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQEL 200 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs-~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i---~Gr~L 200 (843)
....+.|||.||-.-+|.-+|+.+++ .||.|..+ +.| +.+..|||.|.+.++|...+.+|||+.+ +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 45678999999999999999999999 67777776 444 4567899999999999999999999997 47999
Q ss_pred EEeccchhhHHHHH
Q 003161 201 MVDQATREYLERYV 214 (843)
Q Consensus 201 ~V~~A~~k~le~~~ 214 (843)
.|+|+....|..+.
T Consensus 515 ~adf~~~deld~hr 528 (718)
T KOG2416|consen 515 IADFVRADELDKHR 528 (718)
T ss_pred EeeecchhHHHHHh
Confidence 99999988887665
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.22 E-value=1.3e-06 Score=95.61 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=77.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
....||||+||..+++.+|+..|.+||.|..+.++.|..+..++|||||+|.+.+.+.+++. .....|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 36699999999999999999999999999999999999999999999999999999998887 88899999999999999
Q ss_pred hhhH
Q 003161 207 REYL 210 (843)
Q Consensus 207 ~k~l 210 (843)
++.+
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 8855
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=1.7e-06 Score=99.23 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=80.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....+.+|||+||..+++..+.+++..||.+....++.+..+|.++||||++|.++.-...|+..|||..+++.+|+|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhhH
Q 003161 205 ATREYL 210 (843)
Q Consensus 205 A~~k~l 210 (843)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 875533
No 88
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=3.2e-06 Score=95.93 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=67.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..+|||+|||++++..+|.++|..||.|....|..-.-.++..|||||+|.+..++..||. .+-..|+|++|.|....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 5569999999999999999999999999988886643245655999999999999999999 55888999999997544
No 89
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=98.11 E-value=8.4e-05 Score=86.54 Aligned_cols=35 Identities=34% Similarity=0.634 Sum_probs=27.1
Q ss_pred CCcccccCCCCCCCCCcchhcccCCCCcccCCCChH
Q 003161 600 SGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 635 (843)
Q Consensus 600 ~~k~~~~~~vf~~~dd~~~~~~~~~r~lvp~~y~~e 635 (843)
..|++.+.+||++++|.|-+--.++ +||||+|+..
T Consensus 513 ~~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 513 AKKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred ccccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 3456889999999888774444444 9999999995
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.09 E-value=1.4e-06 Score=88.80 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..+||||+|+...|+++.|.++|-..|+|..|.|..+. .++.+ ||||.|.+..++.-|+..|||..+.|+.|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 37899999999999999999999999999999998874 67777 99999999999999999999999999999996554
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.97 E-value=5.8e-05 Score=69.26 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=71.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHhc--CCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMV 202 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~--~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~----Gr~L~V 202 (843)
+||.|.|||...|..+|..++.. .|...-+.++.|..++-+.|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999988863 467778888999889999999999999999999999999999985 567888
Q ss_pred eccchhhH
Q 003161 203 DQATREYL 210 (843)
Q Consensus 203 ~~A~~k~l 210 (843)
.+|.-...
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 98874433
No 92
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=7.2e-06 Score=93.54 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=65.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
....+|+|-|||..|+.++|..+|+.||.|..++. |-...|..||+|.+..+|.+|+..||+..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34789999999999999999999999999999765 556789999999999999999999999999999887
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=8.8e-06 Score=84.45 Aligned_cols=71 Identities=28% Similarity=0.448 Sum_probs=65.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
..||||+||+.+.+.+|..||..||.|..+.+.. |||||.|.+..+|.-||..|||..|.|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 3689999999999999999999999999988743 6999999999999999999999999998899998874
No 94
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.89 E-value=3.6e-05 Score=90.22 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=5.0
Q ss_pred CCCcEEEEc
Q 003161 126 KPQTKVYVG 134 (843)
Q Consensus 126 ~~~~tLfVg 134 (843)
-+..+.||+
T Consensus 639 ~s~~cFWvk 647 (1102)
T KOG1924|consen 639 LSENCFWVK 647 (1102)
T ss_pred cCccceeee
Confidence 334566665
No 95
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.85 E-value=3.2e-05 Score=84.45 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=78.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCcee--------EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~--------~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
....+|||-+||..++..+|..+|.+||.|. .+.|.+++.|+.++|-|.|+|.++..|+.||..+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3467999999999999999999999999875 36778889999999999999999999999999999999999
Q ss_pred eEEEEeccchhhHHHH
Q 003161 198 QELMVDQATREYLERY 213 (843)
Q Consensus 198 r~L~V~~A~~k~le~~ 213 (843)
..|+|..|..+.--+|
T Consensus 144 n~ikvs~a~~r~~ve~ 159 (351)
T KOG1995|consen 144 NTIKVSLAERRTGVES 159 (351)
T ss_pred CCchhhhhhhccCccc
Confidence 9999988886654333
No 96
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.83 E-value=7e-05 Score=87.95 Aligned_cols=8 Identities=25% Similarity=-0.097 Sum_probs=3.4
Q ss_pred HHHhhhcc
Q 003161 451 KKEILYDE 458 (843)
Q Consensus 451 ~~e~~~~~ 458 (843)
+++.+-.|
T Consensus 958 lye~L~eY 965 (1102)
T KOG1924|consen 958 LYESLGEY 965 (1102)
T ss_pred HHHHHHHH
Confidence 34444444
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.011 Score=70.14 Aligned_cols=6 Identities=50% Similarity=0.451 Sum_probs=2.7
Q ss_pred hhHHHH
Q 003161 280 ADQEAL 285 (843)
Q Consensus 280 ~D~~~~ 285 (843)
+|+-++
T Consensus 248 ~dEfil 253 (1118)
T KOG1029|consen 248 ADEFIL 253 (1118)
T ss_pred HHHHHH
Confidence 344444
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.69 E-value=0.0012 Score=76.99 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
++.|-|.|+|++++-++|..||..|-.+-.--+++....|++.|-|.|.|++.++|.+|...|++..|.++.|.|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4478899999999999999999999876554445544789999999999999999999999999999999999875
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.62 E-value=0.0001 Score=79.60 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=77.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCC--ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G--~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
....++|||||.|.+|+.+|...+...| .+..+++..++.+|.++|||+|...+.....+.+..|--..|+|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999998888777 57788888999999999999999999999999999999999999988886
Q ss_pred ccchhhHHHHHHH
Q 003161 204 QATREYLERYVDK 216 (843)
Q Consensus 204 ~A~~k~le~~~~k 216 (843)
.+.+..+.++...
T Consensus 158 ~~NK~~~ak~E~~ 170 (498)
T KOG4849|consen 158 SYNKTNQAKLEDA 170 (498)
T ss_pred ccchhhHHHHHHH
Confidence 6666666555543
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.60 E-value=0.00052 Score=75.94 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=67.3
Q ss_pred CcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+.|.|.||.. .+|.+.|..+|+.||.|..|+|+.++. --|.|.|.+...|.-|+.+|+|..|.|++|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57889999865 789999999999999999999998742 469999999999999999999999999999998876
No 101
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.55 E-value=0.00023 Score=78.23 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=62.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~t---Gk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..|.|.||.+.+|.++++.||+..|+|..+.|+....+ ....-.|||.|.+...+..|-. |..+.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 38999999999999999999999999999999774322 2234589999999999988866 7778877777777444
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 102
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.51 E-value=3.8e-05 Score=87.66 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=75.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....+|||+.-|+..++.-+|..||+.+|+|..|.+|.|..++.++|.|||+|.+..++..||. |.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4557899999999999999999999999999999999999999999999999999999999996 999999999999975
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 255 sE 256 (549)
T KOG0147|consen 255 SE 256 (549)
T ss_pred cH
Confidence 44
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.48 E-value=0.00021 Score=80.79 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
...-|-+.+|||+||+.+|..||+.|+ |..+.+.+ .+|++.|-|||+|.+.+++..||+ .+-..++.+-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 355677889999999999999999996 77766655 489999999999999999999999 88888999999997776
Q ss_pred hhhH
Q 003161 207 REYL 210 (843)
Q Consensus 207 ~k~l 210 (843)
.+..
T Consensus 85 ~~e~ 88 (510)
T KOG4211|consen 85 GAEA 88 (510)
T ss_pred Cccc
Confidence 5544
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.42 E-value=0.00047 Score=61.07 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=48.7
Q ss_pred cEEEEccCCCCCcHH----HHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 129 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 129 ~tLfVgNLp~~vte~----~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
..|||.|||...+.. -|+.++..|| +|.++ + .|.|+|-|.+.+.|.+|..-|+|-.+.|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 479999999988865 5678888887 45554 1 2689999999999999999999999999999999
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 875
No 105
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.39 E-value=0.00014 Score=74.77 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=56.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
-+.||||.||..+|+++.|+.+|+.|-....++|... .|. +.+||.|++.+.|..|+..|.|..|-
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 4679999999999999999999999987777766322 333 58999999999999999999998873
No 106
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.30 E-value=0.0046 Score=67.90 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
..+++.+.|.+|... ++-+.|..+|..||.|..|++++.+ .|-|.|++.+.....+||..||+..+.|.+|.|+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 445889999999874 4567899999999999999998863 3689999999999999999999999999999999
Q ss_pred ccchhhH
Q 003161 204 QATREYL 210 (843)
Q Consensus 204 ~A~~k~l 210 (843)
++.+..+
T Consensus 359 ~SkQ~~v 365 (494)
T KOG1456|consen 359 VSKQNFV 365 (494)
T ss_pred ecccccc
Confidence 9886655
No 107
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.20 E-value=0.00019 Score=78.43 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=72.0
Q ss_pred CcEEE-EccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLf-VgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++| |+||++.++.++|+.+|..||.|..+++..++.+|.++|||||.|.....+..++.. +...++|+++.|.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 999999999999999999999999999999999999999999999999999999987 8888999999998765
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.17 E-value=0.00099 Score=71.98 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=71.0
Q ss_pred CcEEEEccCCCCCcHHH----H--HHHHhcCCceeEEEEeecCCC-CCCcc-eE-EEEeCCHHHHHHHHHHhCCceeCCe
Q 003161 128 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYPSN-GTPKG-FG-FCEFESAEGVLRALRLLNKFNIDGQ 198 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~----L--~~lFs~~G~I~~vkiv~d~~t-Gk~kG-fg-FVeF~s~e~A~~Al~~LnG~~i~Gr 198 (843)
.+-+||-+|++.+..+. | ..+|++||.|..+.|-+...+ ....+ +| ||+|.+.++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999887765 2 479999999998877554211 11223 32 9999999999999999999999999
Q ss_pred EEEEeccchhhHHHHHH
Q 003161 199 ELMVDQATREYLERYVD 215 (843)
Q Consensus 199 ~L~V~~A~~k~le~~~~ 215 (843)
.|+..+.+-||--.|..
T Consensus 194 ~lkatYGTTKYCtsYLR 210 (480)
T COG5175 194 VLKATYGTTKYCTSYLR 210 (480)
T ss_pred eEeeecCchHHHHHHHc
Confidence 99999999999888874
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.09 E-value=0.0022 Score=66.49 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 203 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~ 203 (843)
.++...||+.|||..++...|..+|..|+....++++... .+.+||+|.+...|..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999997753 479999999999999999999999997 8889988
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
+|.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 875
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0014 Score=75.04 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=64.6
Q ss_pred CCcEEEEccCCCCCcH------HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 003161 127 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 199 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte------~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~ 199 (843)
-...|+|-|+|-.-.. .-|..+|+++|+|..+.++.+. .|+++||.|++|.+..+|..|+..|||+.|+ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3578899999853332 3567899999999999999886 4559999999999999999999999999998 778
Q ss_pred EEEec
Q 003161 200 LMVDQ 204 (843)
Q Consensus 200 L~V~~ 204 (843)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 88853
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.00096 Score=69.54 Aligned_cols=70 Identities=20% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
....+.|+|.||+..+...+|..+|..+|.+....+ ..+++||.|....+|.+||..|+|..|.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 345789999999999999999999999999844433 3469999999999999999999999999999999
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.73 E-value=0.0011 Score=69.61 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=61.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCC--------CCCcce----EEEEeCCHHHHHHHHHHhCCcee
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~t--------Gk~kGf----gFVeF~s~e~A~~Al~~LnG~~i 195 (843)
.-.||+++||+.+...-|+.+|+.||.|-.|.+-....+ |.+.++ |.|+|.+...|.++...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999999988765444 333333 67999999999999999999999
Q ss_pred CCeE
Q 003161 196 DGQE 199 (843)
Q Consensus 196 ~Gr~ 199 (843)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 113
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.59 E-value=0.0067 Score=69.01 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=70.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~-vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
...|-+.+||+.||+.+|.+||+..-.|.. +.++.+ ..|++.|=|||.|++.+.|+.||. -|-..|+.+-|.|-.+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 567889999999999999999997654444 455566 478899999999999999999998 78888999999999888
Q ss_pred hhhHHHHH
Q 003161 207 REYLERYV 214 (843)
Q Consensus 207 ~k~le~~~ 214 (843)
...+..+.
T Consensus 181 ~~e~~~~~ 188 (510)
T KOG4211|consen 181 RAEVKRAA 188 (510)
T ss_pred HHHHHhhc
Confidence 66554443
No 114
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.56 E-value=0.0081 Score=56.12 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=45.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEE
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-----NIDGQELMV 202 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~-----~i~Gr~L~V 202 (843)
++.|+|.+++..|+-.+|+.+|+.||.|..|.+... . .-|||-|.+.+.|..|+..+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G----~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG----D--TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC----C--CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 367899999999999999999999999999988554 2 37999999999999999876643 566777666
Q ss_pred eccc
Q 003161 203 DQAT 206 (843)
Q Consensus 203 ~~A~ 206 (843)
..-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 5544
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0059 Score=69.86 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=60.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHh-cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHH
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs-~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~ 188 (843)
-.+.+|||||+||.-++..+|..||. -||.|..+.|=+|+.-+-++|-|-|+|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 34578999999999999999999999 89999999999998888999999999999999999998
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.39 E-value=0.014 Score=57.39 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=53.8
Q ss_pred CCcEEEEccCCC------CCcH---HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 127 PQTKVYVGKIAP------TADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 127 ~~~tLfVgNLp~------~vte---~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
+..||.|.-+.+ ...+ ..|.+.|..||.|.-++++.+ .-+|+|.+-.+|.+|+. |+|..|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 356777765551 2222 267788899999998888665 58999999999999999 99999999
Q ss_pred eEEEEeccchhhHHHH
Q 003161 198 QELMVDQATREYLERY 213 (843)
Q Consensus 198 r~L~V~~A~~k~le~~ 213 (843)
+.|.|...++..+...
T Consensus 97 ~~l~i~LKtpdW~~~l 112 (146)
T PF08952_consen 97 RTLKIRLKTPDWLKGL 112 (146)
T ss_dssp EEEEEEE---------
T ss_pred EEEEEEeCCccHHHHH
Confidence 9999999887766333
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.27 E-value=0.039 Score=65.05 Aligned_cols=77 Identities=8% Similarity=-0.091 Sum_probs=59.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+.+-+.+.++++...+++.||... .|..+.|..+...+-..|.++|.|....++..|+. -|...+-.|.|.|..+.
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 4555567899999999999999643 35666666665455557999999999999999988 56566668888886665
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.19 E-value=0.0062 Score=68.12 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeec---CCCC--CC--------cceEEEEeCCHHHH
Q 003161 117 PLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSNG--TP--------KGFGFCEFESAEGV 183 (843)
Q Consensus 117 ~~p~~~~~~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d---~~tG--k~--------kGfgFVeF~s~e~A 183 (843)
++|......-+.++|.+.|||..-.-+-|..||+.||.|..|+|+.. +.++ .+ +-||||+|...+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 44555555567999999999999888999999999999999999876 3332 22 45899999999999
Q ss_pred HHHHHHhCCc
Q 003161 184 LRALRLLNKF 193 (843)
Q Consensus 184 ~~Al~~LnG~ 193 (843)
.+|...||..
T Consensus 300 ~KA~e~~~~e 309 (484)
T KOG1855|consen 300 RKARELLNPE 309 (484)
T ss_pred HHHHHhhchh
Confidence 9999977643
No 119
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.61 E-value=0.04 Score=61.01 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=72.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCc-e--eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGT-V--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~-I--~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+|-+.+||+.++.++|..||..|-. | ..|+++.+ ..|.+.|-|||.|.+.+.|..|....+...+.+|.|.|-.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 568899999999999999999998863 2 34788887 5899999999999999999999998888888899999987
Q ss_pred cchhhHHHH
Q 003161 205 ATREYLERY 213 (843)
Q Consensus 205 A~~k~le~~ 213 (843)
+.-..++..
T Consensus 359 ~S~eeln~v 367 (508)
T KOG1365|consen 359 CSVEELNEV 367 (508)
T ss_pred ccHHHHHHH
Confidence 775555433
No 120
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.53 E-value=0.03 Score=65.11 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHhcCCceeEEEEeec-C--CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 144 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 144 ~L~~lFs~~G~I~~vkiv~d-~--~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
+++.-+++||.|.+|.+.++ . ...-..|.-||+|.+.++|++|+..|+|..|.|+.|+..+.-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45556678999999999876 2 2233457789999999999999999999999999999987763
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.49 E-value=0.041 Score=50.96 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=51.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCC-------CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE-
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE- 199 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~-------tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~- 199 (843)
.+.|.|-+.|+. ....+...|+.||.|....-+.... ......+-.|+|.++.+|.+||. .||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456888888877 4467778999999998875111100 01223589999999999999999 9999999854
Q ss_pred EEEecc
Q 003161 200 LMVDQA 205 (843)
Q Consensus 200 L~V~~A 205 (843)
+-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446655
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.27 E-value=0.026 Score=62.43 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=60.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhc----CCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKV----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~----~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
.-.|-+.+||++|++.++..||.. -|....+-+++.+ +|+..|-|||.|...++|..||. -|...|+-|-|.|-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 345677899999999999999962 2345667777764 89999999999999999999998 56666665555554
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
.++..
T Consensus 239 RSTaa 243 (508)
T KOG1365|consen 239 RSTAA 243 (508)
T ss_pred HHhHH
Confidence 44433
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.09 E-value=0.026 Score=62.99 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEeccch
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMVDQATR 207 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~-i~Gr~L~V~~A~~ 207 (843)
+.+|+|||.+.++.++|..+|...-...+-.++. -.||+||.+.+..-|.+|+..|+|.. +.|.++.|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998542111111211 13799999999999999999999865 8899999988876
Q ss_pred hhH
Q 003161 208 EYL 210 (843)
Q Consensus 208 k~l 210 (843)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 644
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.06 E-value=0.044 Score=66.39 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMV 202 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V 202 (843)
....+.+|||+|..++....|...|..||.|..|.+- .|. -|++|.|++...++.|+..|-|..|+| +.|.|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 3457899999999999999999999999999987662 233 499999999999999999999999985 78999
Q ss_pred eccch
Q 003161 203 DQATR 207 (843)
Q Consensus 203 ~~A~~ 207 (843)
++|..
T Consensus 526 dla~~ 530 (975)
T KOG0112|consen 526 DLASP 530 (975)
T ss_pred ccccC
Confidence 98873
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.98 E-value=0.003 Score=75.77 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
..+++||.||+..+.+.+|...|+.+|.+..+.+.....+|+.+|+|||.|..+..+.+||....+..++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 3578999999999999999999999999888888766678999999999999999999999955555555444444
No 126
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.98 E-value=0.062 Score=59.00 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=60.0
Q ss_pred CCCcEEEEccCCC----CCc-------HHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003161 126 KPQTKVYVGKIAP----TAD-------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (843)
Q Consensus 126 ~~~~tLfVgNLp~----~vt-------e~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~ 194 (843)
...++|.|.||=. ..+ .++|..-..+||.|.+|.|. ...+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3468999999833 222 13455667899999999874 34567999999999999999999999999
Q ss_pred eCCeEEEEec
Q 003161 195 IDGQELMVDQ 204 (843)
Q Consensus 195 i~Gr~L~V~~ 204 (843)
|+||.|....
T Consensus 339 fdgRql~A~i 348 (382)
T KOG1548|consen 339 FDGRQLTASI 348 (382)
T ss_pred ecceEEEEEE
Confidence 9999998754
No 127
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.93 E-value=0.045 Score=61.10 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=65.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~~ 204 (843)
+++.+|...|||..+++++|+.+|..-|..+..... -++.+-++++.+.+.++|..|+-.++.+.++ +.-|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 557899999999999999999999988876554432 2345569999999999999999999999998 45899998
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
+.
T Consensus 488 Sk 489 (492)
T KOG1190|consen 488 SK 489 (492)
T ss_pred ec
Confidence 75
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.80 E-value=0.011 Score=71.01 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=70.0
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
...|||.|+|+.+|.+.|+.+|+.+|.+.+..++..+ .|+++|.+||.|.+..++.+++...++..+.-..+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999988884 899999999999999999999998888777766666655544
No 129
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.64 E-value=0.068 Score=43.70 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=41.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHH
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 187 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al 187 (843)
+.|-|.+.+....+. +..+|..||.|..+.+. ....+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 567788888777654 44588899999998874 22348999999999999985
No 130
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=0.46 Score=54.97 Aligned_cols=65 Identities=25% Similarity=0.395 Sum_probs=47.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCcee-EEEEeecCCC-CCCcc---eEEEEeCCHHHHHHHHHHh
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSN-GTPKG---FGFCEFESAEGVLRALRLL 190 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~-~vkiv~d~~t-Gk~kG---fgFVeF~s~e~A~~Al~~L 190 (843)
.-.+.||||+||+.++++.|...|..||.+. .|-.-..... --++| |.|+.|++..++...|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3478999999999999999999999999763 3432011001 12456 9999999988887666543
No 131
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=94.55 E-value=5.1 Score=43.11 Aligned_cols=88 Identities=20% Similarity=0.323 Sum_probs=56.8
Q ss_pred CcEEEEccCCC------------CCcHHHHHHHHhcCCceeEEEEee-cC----CCCCC-----cceEE---------EE
Q 003161 128 QTKVYVGKIAP------------TADSDFVLSVLKVCGTVKSWKRAQ-YP----SNGTP-----KGFGF---------CE 176 (843)
Q Consensus 128 ~~tLfVgNLp~------------~vte~~L~~lFs~~G~I~~vkiv~-d~----~tGk~-----kGfgF---------Ve 176 (843)
+.|||+.+||- .-++.-|+..|..||.|..|.|+. || -+|+. .|||| |.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 45666666664 235678999999999999887753 21 23443 44544 44
Q ss_pred eCCHHHHHHHHHHhCCcee----CC----eEEEEeccchhhHHHHHH
Q 003161 177 FESAEGVLRALRLLNKFNI----DG----QELMVDQATREYLERYVD 215 (843)
Q Consensus 177 F~s~e~A~~Al~~LnG~~i----~G----r~L~V~~A~~k~le~~~~ 215 (843)
|.....-..|+.+|.|..+ +| -.+.|+|....++.+..-
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrhlsevqi 275 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRHLSEVQI 275 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhhhhHHHH
Confidence 4444555567777777654 23 368888888888876653
No 132
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.40 E-value=0.031 Score=59.14 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=66.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC----CceeCCeEEEEec
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN----KFNIDGQELMVDQ 204 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln----G~~i~Gr~L~V~~ 204 (843)
..|||.||+..++.+.|..-|+.||.|....++.| ..|++.+-++|.|.....|..|+..++ +..+.+++..|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 68999999999999999999999999998888887 589999999999999999999999885 3344577777754
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 133
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.29 E-value=0.096 Score=57.95 Aligned_cols=73 Identities=25% Similarity=0.216 Sum_probs=62.7
Q ss_pred EccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-C-eEEEEeccchhhH
Q 003161 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-G-QELMVDQATREYL 210 (843)
Q Consensus 133 VgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-G-r~L~V~~A~~k~l 210 (843)
|-|--+.+|.+-|..+...+|+|..|.|.+. +|. -|.|+|++.+.|++|..+|||..|. | -.|+|++|.+..|
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 3455668899999999999999999988775 554 5999999999999999999999986 4 6799999997765
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.76 E-value=0.028 Score=61.63 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=71.2
Q ss_pred CcEEEEccCCCCCcHHHH-H--HHHhcCCceeEEEEeecCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 128 QTKVYVGKIAPTADSDFV-L--SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L-~--~lFs~~G~I~~vkiv~d~~----tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
.+-+||-+|+..+.+..+ . ..|++||.|..+.+..++. .|.+ +-++|+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356889999987766543 3 6899999999998887752 1222 238999999999999999999999999999
Q ss_pred EEeccchhhHHHHHHH
Q 003161 201 MVDQATREYLERYVDK 216 (843)
Q Consensus 201 ~V~~A~~k~le~~~~k 216 (843)
+..+.+.+|-..|...
T Consensus 156 ka~~gttkycs~~l~~ 171 (327)
T KOG2068|consen 156 KASLGTTKYCSFYLRN 171 (327)
T ss_pred HHhhCCCcchhHHhhh
Confidence 9999999888777643
No 135
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.65 E-value=0.16 Score=54.64 Aligned_cols=63 Identities=21% Similarity=0.113 Sum_probs=51.9
Q ss_pred HHHHHHhcCCceeEEEEeecCCCCCCc-ceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 144 FVLSVLKVCGTVKSWKRAQYPSNGTPK-GFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 144 ~L~~lFs~~G~I~~vkiv~d~~tGk~k-GfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+..-..+||.|..|-|...+...... ---||+|+.+++|.+|+-.|||..|+|+.+..+|..
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 556677899999999887765333332 246999999999999999999999999999998876
No 136
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.13 E-value=0.26 Score=49.93 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=60.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMV 202 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~--Gr~L~V 202 (843)
.....|.|.+||+..+..+|+.+....|.|-...+.+| |+|.|+|...++..-||..|+...+. |-...+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 34678999999999999999999999999999999887 59999999999999999999877764 444333
No 137
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.91 E-value=0.41 Score=60.72 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=12.6
Q ss_pred cCCCCchhhhceeccccccchhh
Q 003161 740 MIPKTKEELFSYEINWAVYDKHE 762 (843)
Q Consensus 740 ~ip~~k~~lf~~~i~w~~~~~~~ 762 (843)
.|..-|..+++-.++=..|.+..
T Consensus 873 ~~~~~~~~~~~~~~~~~~~~~~~ 895 (1021)
T PTZ00266 873 AINAKKASIYNNTCDEGTLSKKG 895 (1021)
T ss_pred hhhhhhhhhhhhccccccccccC
Confidence 34455666665555555555443
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=4 Score=44.62 Aligned_cols=73 Identities=23% Similarity=0.256 Sum_probs=54.7
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEeccchh
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMVDQATRE 208 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr-~L~V~~A~~k 208 (843)
=|-|-+.++... ..|..+|.+||.|+.... +..-.|-+|-|.+..+|.+||. .||..|+|- .|-|..++-+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 344556666544 577789999999987654 2334589999999999999999 999999974 5667777644
Q ss_pred hH
Q 003161 209 YL 210 (843)
Q Consensus 209 ~l 210 (843)
.+
T Consensus 271 sv 272 (350)
T KOG4285|consen 271 SV 272 (350)
T ss_pred HH
Confidence 33
No 139
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.14 E-value=0.91 Score=50.04 Aligned_cols=26 Identities=4% Similarity=-0.115 Sum_probs=12.6
Q ss_pred EEEccCCCCCcHHHHHHHHhcCCcee
Q 003161 131 VYVGKIAPTADSDFVLSVLKVCGTVK 156 (843)
Q Consensus 131 LfVgNLp~~vte~~L~~lFs~~G~I~ 156 (843)
+.|+--.+.+++.++..+...--.|.
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiS 373 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAIS 373 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhh
Confidence 33444444555566665555443333
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.22 E-value=0.65 Score=56.41 Aligned_cols=74 Identities=22% Similarity=0.162 Sum_probs=64.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEecc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMVDQA 205 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i--~Gr~L~V~~A 205 (843)
..+.++.|.+-..+-..|..+|+.||.|.++..+++- ..+.|+|.+.+.|..|+.+|+|..+ -|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4567788888899999999999999999998876662 4799999999999999999999986 4889999887
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 63
No 141
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.91 E-value=0.79 Score=55.31 Aligned_cols=9 Identities=11% Similarity=0.006 Sum_probs=3.7
Q ss_pred EEEEccCCC
Q 003161 130 KVYVGKIAP 138 (843)
Q Consensus 130 tLfVgNLp~ 138 (843)
|+|---+.+
T Consensus 387 tvf~~~~De 395 (830)
T KOG1923|consen 387 TVFHELNDE 395 (830)
T ss_pred chhhhhhHH
Confidence 444443333
No 142
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.06 E-value=0.079 Score=64.33 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=64.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...|||+|||...+++.+|+..|..||.|..|.|-+.+ -+.-..||||.|.+...+-+|...+.|..|....+.+.+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 36899999999999999999999999999999885542 344456999999999999999999999888744444433
No 143
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=89.91 E-value=3 Score=50.73 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=8.3
Q ss_pred CCccccccccccc
Q 003161 1 MNEYTVRKVGRLQ 13 (843)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (843)
|.|||-.+-+..+
T Consensus 1 m~QfGgqk~pPg~ 13 (1194)
T KOG4246|consen 1 MQQFGGQKGPPGS 13 (1194)
T ss_pred CcccCCCCCCCCc
Confidence 6788887754433
No 144
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=89.35 E-value=6.8 Score=45.93 Aligned_cols=6 Identities=0% Similarity=-0.247 Sum_probs=2.4
Q ss_pred HHHHHH
Q 003161 144 FVLSVL 149 (843)
Q Consensus 144 ~L~~lF 149 (843)
.|.+-|
T Consensus 236 ElEQpf 241 (940)
T KOG4661|consen 236 ELEQPF 241 (940)
T ss_pred hhhhhh
Confidence 333334
No 145
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.03 E-value=1.5 Score=43.12 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCCcEEEEccCCCCCcH----HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 125 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte----~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
+++-.||.|.=|..++.. ..+...++.||+|.+|.+. |+ .-|.|.|.+..+|-+|+.++.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 344568888766665542 3455667899999999873 33 3699999999999999999886 5567788
Q ss_pred EEeccc
Q 003161 201 MVDQAT 206 (843)
Q Consensus 201 ~V~~A~ 206 (843)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887744
No 146
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=88.57 E-value=0.24 Score=52.69 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred HHHHHHh-cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 144 FVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 144 ~L~~lFs-~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+|...|. +||.|..+.|..+. .-...|-.||.|...++|.+|+..|||.-+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444445 99999999876652 34567889999999999999999999999999999998765
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.65 E-value=1.5 Score=51.21 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=53.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHh-cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMV 202 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs-~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~----Gr~L~V 202 (843)
.+++-|.|++...|-..|..... ..|....+.++.|-.+....|||||.|.+++.+..+.+++||+.+. .+.+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 34444455554444443333322 3466666677777666677899999999999999999999999853 345566
Q ss_pred eccc
Q 003161 203 DQAT 206 (843)
Q Consensus 203 ~~A~ 206 (843)
.||.
T Consensus 468 tYAr 471 (549)
T KOG4660|consen 468 TYAR 471 (549)
T ss_pred ehhh
Confidence 7766
No 148
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.43 E-value=6.8 Score=46.03 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=54.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHh--cCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs--~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG--~~i~Gr~L~ 201 (843)
..|.|++.-||.++..+.++.||. .|-++++|.+..+- -=||+|++..+|+.|...|-. .+|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 357788899999999999999997 58899999986651 369999999999999887652 335565554
No 149
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.02 E-value=3.7 Score=34.87 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcC---CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~---G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L 190 (843)
+..|+|.++. .++..+|..+|..| .....+..+-|. -|=|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999986 57778999999988 235677777773 5889999999999999865
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.16 E-value=0.76 Score=50.51 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=67.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG-~~i~Gr~L~V~~ 204 (843)
...+++|||++.+.+.+.++..+|..+|.+..+.+........++||+++.|...+.+..||. +++ +.+.+..+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCcc
Confidence 347899999999999999999999999998888887766788999999999999999999999 555 566777666655
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
..
T Consensus 165 ~~ 166 (285)
T KOG4210|consen 165 NT 166 (285)
T ss_pred cc
Confidence 54
No 151
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.71 E-value=2.7 Score=43.33 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEeccchhhH
Q 003161 142 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVDQATREYL 210 (843)
Q Consensus 142 e~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln--G~~i~Gr~L~V~~A~~k~l 210 (843)
...|+.+|..|+.+..+..+.. -+-..|.|.+.+.|.+|...|+ +..|.|..|+|.++..-.+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 3689999999999999877654 3457899999999999999999 9999999999999854433
No 152
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=83.58 E-value=1.5 Score=44.82 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=50.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhc-CCceeEEEEee---cCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeCC---
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNIDG--- 197 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~-~G~I~~vkiv~---d~~tG--k~kGfgFVeF~s~e~A~~Al~~LnG~~i~G--- 197 (843)
....|.|.+||+++|++++...++. +|....|..+. ...+. ...+-|||.|.+.+++..-+..++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3679999999999999999887776 66653333332 11111 123569999999999999999999988742
Q ss_pred --eEEEEeccc
Q 003161 198 --QELMVDQAT 206 (843)
Q Consensus 198 --r~L~V~~A~ 206 (843)
..-.|.+|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 345667766
No 153
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=83.38 E-value=3.5 Score=37.07 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=40.3
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln 191 (843)
-||--..|......+|..+|+.||.|. |..+-| .-|||...+.+.|..|+..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 344444999999999999999999764 555555 269999999999999998776
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.39 E-value=4.9 Score=34.93 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=38.7
Q ss_pred EEEEc-cCCCCCcHHHHHHHHhcCCc-----eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 130 tLfVg-NLp~~vte~~L~~lFs~~G~-----I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
++||. +--..++..+|..+|...+. |-.+.|..+ |.||+-.. ..|..++..|++..+.|++|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 44542 33446777888888876643 445666443 99999875 57889999999999999999998
Q ss_pred cc
Q 003161 204 QA 205 (843)
Q Consensus 204 ~A 205 (843)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 155
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=82.05 E-value=0.79 Score=52.52 Aligned_cols=73 Identities=5% Similarity=-0.030 Sum_probs=59.8
Q ss_pred CcEEEEccCCCCCcH-HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte-~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+.|-+.-+++.... .+|...|.+||.|..|.|-.. --.|.|+|.+..+|-.|.. .+|..|+|+.|+|-|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 455666667776654 699999999999999987443 2369999999999988877 89999999999998876
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 156
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=81.54 E-value=6.8 Score=44.42 Aligned_cols=7 Identities=14% Similarity=-0.050 Sum_probs=2.7
Q ss_pred CCCCCcc
Q 003161 19 TTSTTPF 25 (843)
Q Consensus 19 pt~t~qq 25 (843)
.+++.+|
T Consensus 302 k~a~P~~ 308 (487)
T KOG4672|consen 302 KTAIPEP 308 (487)
T ss_pred cccCCCC
Confidence 3444333
No 157
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=80.91 E-value=2.3 Score=31.10 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHH
Q 003161 799 KASQMLELLQTILDDEAEMFVLKM 822 (843)
Q Consensus 799 ~p~~l~~~l~~~ld~~a~~fv~~l 822 (843)
+-..|++++..||+.+|+.||..+
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 158
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=80.40 E-value=3.2 Score=44.32 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=49.4
Q ss_pred EEEEccCCCCCcHHH---HHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 130 KVYVGKIAPTADSDF---VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 130 tLfVgNLp~~vte~~---L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+|++|+-..+..+- +...|+.|-.+...+++.+. -+...+++|+.|.....-..+-..-+++.|+-..|++.-
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 344455444444332 25667777777777787773 678889999999887777777666666667666655543
No 159
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=78.44 E-value=15 Score=34.74 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=47.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
..+.+...|..++.++|..+.+.+- .|..++|+++ ...++-...+.|.+...|..-...+||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344455555555566765555543 5667888886 23356678999999999999999999999863
No 160
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=76.92 E-value=64 Score=39.11 Aligned_cols=6 Identities=50% Similarity=1.038 Sum_probs=2.7
Q ss_pred cccCCC
Q 003161 627 LVPIDY 632 (843)
Q Consensus 627 lvp~~y 632 (843)
+||=-|
T Consensus 559 fVPhgy 564 (811)
T KOG4364|consen 559 FVPHGY 564 (811)
T ss_pred ecCCcc
Confidence 344444
No 161
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=75.93 E-value=2.4 Score=46.61 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhc
Q 003161 285 LEKLTCMVEERLK 297 (843)
Q Consensus 285 ~e~ie~~~ee~~~ 297 (843)
...|.+.|+++..
T Consensus 226 qkqId~~ie~r~r 238 (453)
T KOG2888|consen 226 QKQIDEKIEERKR 238 (453)
T ss_pred HHHHHHHHHhccc
Confidence 3445555555443
No 162
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=70.02 E-value=23 Score=32.78 Aligned_cols=75 Identities=13% Similarity=0.306 Sum_probs=56.2
Q ss_pred hHhhhhhhhHHHHHHhhcCcchh--HHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 003161 762 ELHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 836 (843)
Q Consensus 762 ~~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~~~~~g 836 (843)
.+.+.||-.|.+|...+=-+-|| .+-+||+=++....++..++.+|...+|.=...++...-.-..|..++...|
T Consensus 7 ~~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 7 QITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 35567899999999887555444 4889999999999999999999999999777777777777777777776665
No 163
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.95 E-value=19 Score=41.50 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=57.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcC-CceeEEEEeecCCCCCCcc-eEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKG-FGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~-G~I~~vkiv~d~~tGk~kG-fgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
++.|+|-.+|..++-.+|..|...| -.|..++|++| |.+.. ...+.|.+..+|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998855 46889999996 44433 46899999999999999999999864
No 164
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.16 E-value=35 Score=42.57 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCce---eCCeEEEEeccc
Q 003161 181 EGVLRALRLLNKFN---IDGQELMVDQAT 206 (843)
Q Consensus 181 e~A~~Al~~LnG~~---i~Gr~L~V~~A~ 206 (843)
--|.+|-..+|-+. -+||+..++++.
T Consensus 339 vRC~RCkaYinPFmqF~~~gr~f~Cn~C~ 367 (1007)
T KOG1984|consen 339 VRCNRCKAYINPFMQFIDGGRKFICNFCG 367 (1007)
T ss_pred cchhhhhhhcCcceEEecCCceEEecCCC
Confidence 34455555555433 246666665554
No 165
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=62.84 E-value=62 Score=37.23 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003161 182 GVLRALR 188 (843)
Q Consensus 182 ~A~~Al~ 188 (843)
+..+||+
T Consensus 458 dLL~aIr 464 (518)
T KOG1830|consen 458 DLLAAIR 464 (518)
T ss_pred HHHHHHH
Confidence 3334444
No 166
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=62.22 E-value=6.4 Score=49.62 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=18.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEE
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 158 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~v 158 (843)
..+++|-.+-..+..+.|+.+.+.||...++
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 4556666666666666666666666654443
No 167
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.37 E-value=31 Score=41.08 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHhcC----CceeEEEEeecC----------CCCC---------------------
Q 003161 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 168 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~L~~lFs~~----G~I~~vkiv~d~----------~tGk--------------------- 168 (843)
....++|-|.||.|. +...+|.-+|+.| |.|.+|.|+..- ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445789999999995 5566888888865 689999876421 1111
Q ss_pred ---------------C-cceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003161 169 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (843)
Q Consensus 169 ---------------~-kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr 198 (843)
. .-||.|+|.+...|......++|+.+..-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1 23789999999999999999999999743
No 168
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=58.80 E-value=2.4e+02 Score=29.69 Aligned_cols=7 Identities=71% Similarity=0.999 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003161 503 KRRAEEE 509 (843)
Q Consensus 503 ~r~~~e~ 509 (843)
+++.+++
T Consensus 166 kr~~eE~ 172 (216)
T PF11600_consen 166 KRKKEEE 172 (216)
T ss_pred HHhhHHH
Confidence 3433433
No 169
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=57.92 E-value=48 Score=41.01 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=9.8
Q ss_pred ccccccccc-CCCCCCCcccccc
Q 003161 8 KVGRLQILH-KRTTSTTPFLQQT 29 (843)
Q Consensus 8 ~~~~~~~l~-~~pt~t~qqqqQq 29 (843)
.+.++|-++ ..+.+++++|+++
T Consensus 546 ~~~~~P~~ap~s~~~~tp~q~~~ 568 (756)
T KOG2375|consen 546 PSIFLPRVAPASPMAMTPFQNSQ 568 (756)
T ss_pred CCCCCCCcCccccCCCCCCcccc
Confidence 455555555 3334444444333
No 170
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=55.34 E-value=4.9 Score=49.00 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=5.5
Q ss_pred hhHHHHHHHhhH
Q 003161 208 EYLERYVDKKTE 219 (843)
Q Consensus 208 k~le~~~~kk~~ 219 (843)
...-.|...+..
T Consensus 194 smpfkwnaqriq 205 (1194)
T KOG4246|consen 194 SMPFKWNAQRIQ 205 (1194)
T ss_pred CCCccccHHHHH
Confidence 444455544443
No 171
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=53.44 E-value=51 Score=28.39 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 139 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 139 ~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
.++-.+++..|..|+- . .|..|+ | | =||.|.+..+|.+|....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4666899999999973 2 233342 3 2 489999999999999999999998887765
No 172
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=50.73 E-value=39 Score=40.06 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=16.4
Q ss_pred HHHHHhcCCceeEEEEeecCCCCCCcceEE--EEeCCHHHHHHHH
Q 003161 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGF--CEFESAEGVLRAL 187 (843)
Q Consensus 145 L~~lFs~~G~I~~vkiv~d~~tGk~kGfgF--VeF~s~e~A~~Al 187 (843)
|.-+|-..-..+.|+|+.- ..|.+.|.++ ++..+=.+|..||
T Consensus 294 IeGVfP~~tpd~RcRvvNA-Ll~g~~GL~L~p~ec~sW~~avaaL 337 (582)
T PF03276_consen 294 IEGVFPTTTPDLRCRVVNA-LLGGHLGLALTPNECGSWASAVAAL 337 (582)
T ss_pred hcccccCCCccHHHHHHHH-HhcCCCccccCccccccHHHHHHHH
Confidence 3444443334444444332 2333333332 3333444444444
No 173
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=49.11 E-value=20 Score=43.20 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003161 765 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 827 (843)
Q Consensus 765 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrlli 827 (843)
.+++--+.....+|+|-.-+.+++.|+..|........=..+|..||.++.+.||..+|-.|.
T Consensus 22 ~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 22 AKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 578888999999999998777777777777655544444559999999999999999999987
No 174
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=48.68 E-value=5.9 Score=34.23 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHhhhHHHHHHHHHH
Q 003161 798 VKASQMLELLQTILDDEAEMFVLKM 822 (843)
Q Consensus 798 ~~p~~l~~~l~~~ld~~a~~fv~~l 822 (843)
.+-..||++|..||+.+|+.||..+
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999754
No 175
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=47.17 E-value=20 Score=39.77 Aligned_cols=8 Identities=13% Similarity=-0.051 Sum_probs=3.6
Q ss_pred hhhHHHHH
Q 003161 207 REYLERYV 214 (843)
Q Consensus 207 ~k~le~~~ 214 (843)
+..|-.|-
T Consensus 171 p~dLw~Wy 178 (453)
T KOG2888|consen 171 PADLWDWY 178 (453)
T ss_pred hhHHHHHh
Confidence 34444444
No 176
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.55 E-value=1.5e+02 Score=37.38 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.8
Q ss_pred HHHHHHHHh
Q 003161 785 TLVDYIVSS 793 (843)
Q Consensus 785 ~lv~~i~~~ 793 (843)
.-|||+|..
T Consensus 990 sY~dyL~~~ 998 (1007)
T KOG1984|consen 990 SYVDYLCEL 998 (1007)
T ss_pred ccchHHHHH
Confidence 445666553
No 177
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=44.53 E-value=5.8 Score=41.63 Aligned_cols=76 Identities=16% Similarity=0.342 Sum_probs=63.6
Q ss_pred CCCcEEEEcc----CCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 126 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgN----Lp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
....+++.|| |...++.+.+..+|+..|.+..+++.++. +|.++.|+|++|.-....-.++....+..+.-+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3467888888 88899999999999999999999998884 689999999999988888888887777766555544
Q ss_pred E
Q 003161 202 V 202 (843)
Q Consensus 202 V 202 (843)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 4
No 178
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=44.37 E-value=2.6e+02 Score=33.18 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=12.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCce
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTV 155 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I 155 (843)
..+-+..|+..-....|..-...-|.+
T Consensus 482 ~~ve~t~~~~~dgR~~LmaqIRqG~~L 508 (569)
T KOG3671|consen 482 KKVETTALSSGDGRDALMAQIRQGGQL 508 (569)
T ss_pred cceeeccCcCcccHHHHHHHHHhcccc
Confidence 345555555444444554444433433
No 179
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=43.86 E-value=69 Score=37.60 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=18.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhc
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKV 151 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~ 151 (843)
..++.++|-.-=+-.++...|..+|..
T Consensus 303 ~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 303 SRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccccchhhhccCcceecHHHHHHHHHH
Confidence 444666776555556777889999963
No 180
>PHA03378 EBNA-3B; Provisional
Probab=43.01 E-value=1.4e+02 Score=36.60 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=5.4
Q ss_pred cHHHHHHHH
Q 003161 141 DSDFVLSVL 149 (843)
Q Consensus 141 te~~L~~lF 149 (843)
+..-|+.++
T Consensus 821 ~k~ilrqll 829 (991)
T PHA03378 821 TKQILRQLL 829 (991)
T ss_pred HHHHHHHHh
Confidence 455666665
No 181
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=42.92 E-value=1.6e+02 Score=36.51 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=14.7
Q ss_pred cccccccccccccCCCCCCCc
Q 003161 4 YTVRKVGRLQILHKRTTSTTP 24 (843)
Q Consensus 4 ~~~~~~~~~~~l~~~pt~t~q 24 (843)
||..-++.+++....|....+
T Consensus 624 fG~~~~~~m~i~~~~P~~~~~ 644 (759)
T PF05518_consen 624 FGRADVPEMPISTVPPSFGTA 644 (759)
T ss_pred cCCCCccccccccCCCccccc
Confidence 677777777777776666654
No 182
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.69 E-value=3.3e+02 Score=31.45 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=44.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCce-eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHH
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I-~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~ 189 (843)
.+.|-|.++|.....++|..+|+.||.- -.|++|-|. .+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 5678899999988889999999999743 345555552 899999999999999983
No 183
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.22 E-value=33 Score=37.19 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=41.0
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 003161 770 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 826 (843)
Q Consensus 770 wi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-ld~~--a~~fv~~lwrll 826 (843)
-|+.....|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 56666777888888888888888888888887777766655 4422 356888888654
No 184
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=38.96 E-value=5.1 Score=47.10 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHHHHH
Q 003161 481 RIREKEEDLADEVREEEEIAVAKRRA 506 (843)
Q Consensus 481 r~re~e~d~~dr~re~eE~~e~~r~~ 506 (843)
.+-+.+..+.|++++.+++.+..++.
T Consensus 271 ~~~~~~~ieed~~~~~~~il~k~~~~ 296 (752)
T KOG0670|consen 271 EEAESEIIEEDRRKREEEILEKYKQK 296 (752)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 44455566666776666666665443
No 185
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=37.72 E-value=1.9e+02 Score=35.83 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=4.4
Q ss_pred cCCceeEE
Q 003161 151 VCGTVKSW 158 (843)
Q Consensus 151 ~~G~I~~v 158 (843)
.-|.|..+
T Consensus 1071 ~~~diIei 1078 (1106)
T KOG0162|consen 1071 KKGDIIEI 1078 (1106)
T ss_pred cCCCEEEE
Confidence 45666554
No 186
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=35.85 E-value=34 Score=35.11 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~ 194 (843)
......+++++++..++...+..+|..+|.+....+..........++.|+.+.....+..++...+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKK 291 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcccccee
Confidence 4457899999999999999999999999999777776654444455566666665555555555443333
No 187
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=35.31 E-value=73 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=39.4
Q ss_pred HHHHHhhcCcchhHHHHHHHHhhhccC---ChHHHHHHHHHhhhHHHHHHHHH
Q 003161 772 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVLK 821 (843)
Q Consensus 772 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~p~~l~~~l~~~ld~~a~~fv~~ 821 (843)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=+..
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Lld 60 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLLD 60 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHHH
Confidence 578999999 68889999999997543 66789999999999887654433
No 188
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.13 E-value=1.6e+02 Score=32.35 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=35.5
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCce-eEEEEeecCCCCCCcceEEEEeCCH
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESA 180 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I-~~vkiv~d~~tGk~kGfgFVeF~s~ 180 (843)
.+-|||+||+..+...+|+.-+...|.+ .++.+ ..+.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 4569999999999999999999877643 33332 13457799999874
No 189
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=34.33 E-value=96 Score=28.15 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.8
Q ss_pred HhhhhhhhHHHHHHhh--cCc---chhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHH
Q 003161 763 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 820 (843)
Q Consensus 763 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~ 820 (843)
..+.|+|||..|+.|| ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 4567999999999986 554 578899999999988888888888888888877777764
No 190
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=34.15 E-value=2.3e+02 Score=33.55 Aligned_cols=6 Identities=33% Similarity=0.507 Sum_probs=2.2
Q ss_pred CceeEE
Q 003161 153 GTVKSW 158 (843)
Q Consensus 153 G~I~~v 158 (843)
|.+..+
T Consensus 479 ~ql~~v 484 (569)
T KOG3671|consen 479 GQLKKV 484 (569)
T ss_pred ccccce
Confidence 333333
No 191
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.49 E-value=65 Score=29.23 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=34.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 179 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s 179 (843)
...|||||++..+.+.-...+...++.-.-+-+..+ .+ ..||+|.++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeCC
Confidence 567999999999998877777776654433333333 33 88999998843
No 192
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=1.3e+02 Score=32.42 Aligned_cols=9 Identities=56% Similarity=0.534 Sum_probs=6.1
Q ss_pred CChHHHhhh
Q 003161 632 YSTEELQAA 640 (843)
Q Consensus 632 y~~e~~~~~ 640 (843)
.|.+|+.||
T Consensus 257 IS~eEl~AV 265 (299)
T KOG3054|consen 257 ISMEELAAV 265 (299)
T ss_pred ecHHHHHHH
Confidence 378887655
No 193
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=32.93 E-value=1.5e+02 Score=36.97 Aligned_cols=10 Identities=10% Similarity=-0.194 Sum_probs=3.7
Q ss_pred cccCCCCCCC
Q 003161 14 ILHKRTTSTT 23 (843)
Q Consensus 14 ~l~~~pt~t~ 23 (843)
..++..+..+
T Consensus 556 ~s~~~~tp~q 565 (756)
T KOG2375|consen 556 ASPMAMTPFQ 565 (756)
T ss_pred cccCCCCCCc
Confidence 3333333333
No 194
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.02 E-value=8.1 Score=45.41 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=55.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
.|+|||.|++++++-..|..++..+-.+..+.+-.+.......-++.|+|.-.....-|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 578999999999999999999998877777766444333345568999999888888888888887764
No 195
>PRK11901 hypothetical protein; Reviewed
Probab=31.76 E-value=5.5e+02 Score=29.00 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=38.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceE--EEEeCCHHHHHHHHHHhCCc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFG--FCEFESAEGVLRALRLLNKF 193 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfg--FVeF~s~e~A~~Al~~LnG~ 193 (843)
..+|-|.. ....+.|..|...++ +..+.++.-..+|+. .|. |=.|.+.++|..|+..|-..
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 44555544 445677888777775 344555544345554 233 34688999999999988643
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=29.52 E-value=59 Score=37.96 Aligned_cols=63 Identities=19% Similarity=0.410 Sum_probs=44.8
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCC----hHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003161 765 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVK----ASQMLELLQTILDDEAEMFVLKMWRMLI 827 (843)
Q Consensus 765 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~----p~~l~~~l~~~ld~~a~~fv~~lwrlli 827 (843)
+.|+-|...-..=+---.-..|-.||+-.|+.-++ +.-++++|..||-+++..||.||...|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 35666766543333333334588999999986542 4567799999999999999999876553
No 197
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=28.76 E-value=4 Score=46.27 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEe-ecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv-~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...+.+-|.|+|+....+.|..|+..||.|..|-.+ +++.+ ..--|+|...+.+..||..|||..|.+..+.|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 346779999999999999999999999999988653 23222 2345789999999999999999999999999876
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
--
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 54
No 198
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=28.48 E-value=2.9e+02 Score=30.95 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 003161 285 LEKLTCMVE 293 (843)
Q Consensus 285 ~e~ie~~~e 293 (843)
+..|+.+.+
T Consensus 295 LQqIEr~Ak 303 (407)
T PF04625_consen 295 LQQIERMAK 303 (407)
T ss_pred HHHHHHHHH
Confidence 344444443
No 199
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=28.33 E-value=37 Score=34.88 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=55.7
Q ss_pred CCcEEEEccCCCCCcHH-----HHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003161 127 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~-----~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr-~L 200 (843)
-.+++++.+|+..+-.+ ....+|..|-...-+.+++ +.++--|.|.++..|..|.-.++++.|.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 35678888888765432 3445666665554444433 234566899999999999999999999987 88
Q ss_pred EEeccchhhH
Q 003161 201 MVDQATREYL 210 (843)
Q Consensus 201 ~V~~A~~k~l 210 (843)
..-+|..-+.
T Consensus 83 k~yfaQ~~~~ 92 (193)
T KOG4019|consen 83 KLYFAQPGHP 92 (193)
T ss_pred EEEEccCCCc
Confidence 8888876554
No 200
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.16 E-value=3.3e+02 Score=34.30 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=4.4
Q ss_pred EEEeCCH
Q 003161 174 FCEFESA 180 (843)
Q Consensus 174 FVeF~s~ 180 (843)
||+|-+.
T Consensus 231 FV~fid~ 237 (887)
T KOG1985|consen 231 FVEFIDQ 237 (887)
T ss_pred eEEecCC
Confidence 6666655
No 201
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=24.80 E-value=86 Score=27.32 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=45.6
Q ss_pred HHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 143 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 143 ~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+|.+-|...| .+..+..+..+.++.+...-||+.....+... .|+=..|+|+.|.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 67888888887777777788888876543333 456667889999997665
No 202
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=24.00 E-value=93 Score=34.87 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=12.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCcee
Q 003161 171 GFGFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 171 GfgFVeF~s~e~A~~Al~~LnG~~i 195 (843)
---||-|.-..-|..||. |-+..+
T Consensus 174 T~v~vry~pe~iACaciy-LaAR~~ 197 (367)
T KOG0835|consen 174 TDVFVRYSPESIACACIY-LAARNL 197 (367)
T ss_pred cceeeecCHHHHHHHHHH-HHHhhh
Confidence 346777765444444443 444333
No 203
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=23.63 E-value=2.4e+02 Score=25.16 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=44.6
Q ss_pred hhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 003161 768 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIF 828 (843)
Q Consensus 768 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllif 828 (843)
..=+..++..+|-+.|-.-+-+.++....+.+-..|+-.|..|||.-|.--+...=|.||.
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp 65 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVIP 65 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHcC
Confidence 4556778888886666555555555556666999999999999999999665555555553
No 204
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.22 E-value=2.2e+02 Score=24.34 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=39.9
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHH-HHHhhhHHHHHHHHHHHH
Q 003161 769 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 824 (843)
Q Consensus 769 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~ld~~a~~fv~~lwr 824 (843)
+++..-+.-++....+.+..++-..+....++..++.+ |.++|.+ |-.+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777778888888999999999887889999887 8888876 555665
No 205
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=22.84 E-value=1.9e+02 Score=34.25 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=5.5
Q ss_pred ccCCCChHHHh
Q 003161 628 VPIDYSTEELQ 638 (843)
Q Consensus 628 vp~~y~~e~~~ 638 (843)
||-|-.+|.+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 44445555554
No 206
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.77 E-value=1.2e+02 Score=28.25 Aligned_cols=50 Identities=22% Similarity=0.279 Sum_probs=34.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCH
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 180 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~ 180 (843)
...||||+++..+.+.-...+-..|+. -++.++.. +....||+|.++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEc--CCCCCCcEEEecCCC
Confidence 567999999999988776667666654 33334332 234449999998753
No 207
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=22.14 E-value=3.1e+02 Score=34.58 Aligned_cols=8 Identities=13% Similarity=0.455 Sum_probs=3.4
Q ss_pred cEEEEccC
Q 003161 129 TKVYVGKI 136 (843)
Q Consensus 129 ~tLfVgNL 136 (843)
++=||-.|
T Consensus 422 ~~QYI~sL 429 (988)
T KOG2072|consen 422 KSQYIPSL 429 (988)
T ss_pred ccccchhH
Confidence 34444443
No 208
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.14 E-value=88 Score=29.89 Aligned_cols=56 Identities=20% Similarity=0.179 Sum_probs=30.5
Q ss_pred EEEEccCCCC---------CcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHH-HHHHHH
Q 003161 130 KVYVGKIAPT---------ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEG-VLRALR 188 (843)
Q Consensus 130 tLfVgNLp~~---------vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~-A~~Al~ 188 (843)
++.|-|++.. ++...|...|+.|..+. ++.+.+. ..+.|++.|.|.+.-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4556666443 35578999999998765 6666663 3677999999987443 344544
No 209
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.55 E-value=2.1e+02 Score=25.39 Aligned_cols=64 Identities=17% Similarity=0.401 Sum_probs=41.6
Q ss_pred hhhHhhhhhhhHHHHHHhhcCcc-hhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHH
Q 003161 760 KHELHERMRPWISKKITEFLGEE-ETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWR 824 (843)
Q Consensus 760 ~~~~~~~~~pwi~kki~e~lG~e-e~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwr 824 (843)
+..|..+|+.|....--+=||.- -..|+|||++.|..|---+.|.+. ..+|.+-.+.+-..||-
T Consensus 8 k~~li~~iq~yf~~E~d~eiG~~~Ae~LLDF~~~elGp~~YNqgv~DA-~~~~~~r~~~l~~~ly~ 72 (76)
T PF09932_consen 8 KAELIDKIQRYFAEELDEEIGDFEAEFLLDFFIEELGPHFYNQGVQDA-QAVLEERMEDLEEELYE 72 (76)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHhHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHhHHHHHHH
Confidence 45677889999988888888864 556889999999877644443322 23344444444444443
No 210
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=21.32 E-value=34 Score=38.02 Aligned_cols=11 Identities=55% Similarity=0.885 Sum_probs=4.0
Q ss_pred ccccccCCchh
Q 003161 368 RVHDRRGRDKE 378 (843)
Q Consensus 368 r~r~rr~r~r~ 378 (843)
|+++|+.|+++
T Consensus 269 rd~~rr~rd~~ 279 (319)
T KOG0796|consen 269 RDRDRRSRDRS 279 (319)
T ss_pred ccccccCCccc
Confidence 33333333333
No 211
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=21.22 E-value=2e+02 Score=31.61 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhh-------HHHHHHHHHHHHHHHH
Q 003161 801 SQMLELLQTILD-------DEAEMFVLKMWRMLIF 828 (843)
Q Consensus 801 ~~l~~~l~~~ld-------~~a~~fv~~lwrllif 828 (843)
-+|.++|+..|. -++..||.+|||.|+.
T Consensus 190 ~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~ 224 (282)
T PF08926_consen 190 YELSENLEKLLQEAHERSESEEVAFVTQLVRKLLI 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 467788888887 3467899999998873
No 212
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=21.22 E-value=3.6e+02 Score=35.41 Aligned_cols=68 Identities=16% Similarity=0.350 Sum_probs=36.5
Q ss_pred hhhhhhhHHhhhh-cCCCCchhhhceeccccccchhhHhhhhhhh--------------------HHHHHHhhcCc-chh
Q 003161 727 DNKKLLDAKQLID-MIPKTKEELFSYEINWAVYDKHELHERMRPW--------------------ISKKITEFLGE-EET 784 (843)
Q Consensus 727 ~~~~~~~~~~l~~-~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pw--------------------i~kki~e~lG~-ee~ 784 (843)
|.|+++=-|.+.. +=|..=.-+++-.-+|++=.-..|..-|+-| |.+.-+++|+- -++
T Consensus 841 edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~D 920 (1639)
T KOG0905|consen 841 EDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSND 920 (1639)
T ss_pred hhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcH
Confidence 4555554555543 3344445566666677765544444555555 33444555543 366
Q ss_pred HHHHHHHHhh
Q 003161 785 TLVDYIVSST 794 (843)
Q Consensus 785 ~lv~~i~~~l 794 (843)
.|+||+=..+
T Consensus 921 eL~d~LPQlV 930 (1639)
T KOG0905|consen 921 ELLDYLPQLV 930 (1639)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 213
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=20.76 E-value=36 Score=33.72 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.1
Q ss_pred cccccCCCCCCCCCcchhc
Q 003161 602 KRTAVPSVFHVEDDDDADK 620 (843)
Q Consensus 602 k~~~~~~vf~~~dd~~~~~ 620 (843)
++.+|+.|||.+||+|..+
T Consensus 88 ~~~~va~~Fn~d~d~e~eE 106 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPEE 106 (150)
T ss_pred CcchhhhhhccccccChhh
Confidence 4667899999987776443
No 214
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.62 E-value=4.4e+02 Score=30.12 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=0.0
Q ss_pred cchhhhccccccccccccCCCCCCCCC--CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003161 28 QTMLATECSLALFKVICSAGDSCHACG--AISIMLLMCGLPRYPAPYPSMVRPAFPPRPPGPVGVLPSVARPPVPGIPGV 105 (843)
Q Consensus 28 Qqql~~~~s~aapp~~~sag~~~p~~g--a~~~~~~~pg~p~~p~P~~~~~~P~~pp~ppg~~~~~P~~~~p~~pg~pg~ 105 (843)
+.|+.+.+..+.+|.-..+++.+...+ +.....+.++.|+.|+|. +.++|.....++.-..+.++.++|.++..++.
T Consensus 390 maq~l~~~~~a~sP~rp~t~q~~~~~~~~g~a~~~pt~~~PprPppq-ggppP~g~~~~p~~~~hl~~~gppq~prt~sr 468 (488)
T KOG3895|consen 390 MAQLLTRPIAAESPARPTTSQVPSGGGLPGPAQASPTRRLPPRPPPQ-GGPPPRGHMSDPVGSRHLDHDGPPQIPRTGSR 468 (488)
T ss_pred hhhccCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCccccCCccccccCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 003161 106 RPIMPPVVRPVPLPTVTPAE 125 (843)
Q Consensus 106 ~P~~~~~~~P~~~p~~~~~~ 125 (843)
.+.....++-....+..+..
T Consensus 469 ~s~~~t~~q~~~t~Ag~~g~ 488 (488)
T KOG3895|consen 469 ESVDDTMGQLKRTFAGFFGE 488 (488)
T ss_pred CCCccccccCCccccCCCCC
Done!