Query 003161
Match_columns 843
No_of_seqs 577 out of 2522
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 1.4E-37 4.6E-42 287.7 10.1 106 733-838 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 3.1E-22 1.1E-26 183.8 8.1 92 743-839 5-98 (111)
3 3pgw_S U1-70K; protein-RNA com 99.8 3E-21 1E-25 219.7 11.5 85 126-210 100-184 (437)
4 1x4q_A U4/U6 small nuclear rib 99.8 3.5E-19 1.2E-23 159.3 7.1 68 764-831 15-82 (92)
5 4fxv_A ELAV-like protein 1; RN 99.8 2.8E-18 9.4E-23 156.0 10.9 82 126-207 17-98 (99)
6 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.6E-22 163.4 12.6 91 127-217 54-146 (156)
7 3s8s_A Histone-lysine N-methyl 99.7 2.9E-17 9.9E-22 152.2 11.3 82 127-208 5-86 (110)
8 2khc_A Testis-specific RNP-typ 99.7 1.7E-16 5.7E-21 147.7 14.2 82 125-206 37-118 (118)
9 2lxi_A RNA-binding protein 10; 99.7 2.4E-17 8.3E-22 147.3 7.2 81 128-208 1-83 (91)
10 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-16 4.2E-21 140.2 10.6 82 127-208 5-86 (87)
11 3md1_A Nuclear and cytoplasmic 99.7 1.4E-16 4.8E-21 138.5 10.5 80 129-208 2-81 (83)
12 2e5h_A Zinc finger CCHC-type a 99.7 2.9E-16 9.9E-21 139.9 12.5 81 126-206 14-94 (94)
13 2lkz_A RNA-binding protein 5; 99.7 8.9E-17 3E-21 145.3 9.0 81 127-207 8-94 (95)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.2E-21 138.4 10.6 81 126-206 5-85 (85)
15 3ns6_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 147.3 7.5 82 127-208 5-93 (100)
16 2la6_A RNA-binding protein FUS 99.7 1.9E-16 6.4E-21 142.9 10.9 80 127-206 12-99 (99)
17 2cpz_A CUG triplet repeat RNA- 99.7 3.4E-16 1.2E-20 145.1 12.9 83 126-208 23-105 (115)
18 2x1f_A MRNA 3'-END-processing 99.7 2.1E-16 7.3E-21 141.8 10.7 82 127-208 1-82 (96)
19 2cq4_A RNA binding motif prote 99.7 1.6E-16 5.6E-21 147.0 10.1 82 126-208 23-104 (114)
20 1x5u_A Splicing factor 3B subu 99.7 2.8E-16 9.4E-21 143.1 11.3 83 126-208 13-95 (105)
21 2dnz_A Probable RNA-binding pr 99.7 2.5E-16 8.5E-21 140.6 10.3 82 127-208 4-85 (95)
22 3p5t_L Cleavage and polyadenyl 99.7 6.9E-17 2.3E-21 143.5 6.6 80 129-208 2-83 (90)
23 2dgs_A DAZ-associated protein 99.7 3.1E-16 1.1E-20 141.4 10.9 82 126-208 8-89 (99)
24 2jrs_A RNA-binding protein 39; 99.7 2.5E-16 8.6E-21 145.1 10.4 84 125-208 23-106 (108)
25 2cqc_A Arginine/serine-rich sp 99.7 4.8E-16 1.6E-20 138.6 11.9 81 126-206 13-93 (95)
26 1whw_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 140.7 11.0 83 126-208 6-88 (99)
27 2dgo_A Cytotoxic granule-assoc 99.7 5.4E-16 1.9E-20 143.6 12.4 84 125-208 12-95 (115)
28 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-16 1.1E-20 143.9 10.7 83 126-208 24-106 (110)
29 1x5t_A Splicing factor 3B subu 99.7 2.5E-16 8.6E-21 140.9 9.5 82 127-208 4-86 (96)
30 4f25_A Polyadenylate-binding p 99.7 2.4E-16 8.3E-21 146.7 9.8 79 128-208 5-83 (115)
31 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.8E-16 9.6E-21 142.3 10.0 83 126-208 10-92 (102)
32 2cq0_A Eukaryotic translation 99.7 4E-16 1.4E-20 141.7 10.9 83 126-208 13-95 (103)
33 1p27_B RNA-binding protein 8A; 99.7 2.7E-16 9.2E-21 143.4 9.8 82 127-208 22-103 (106)
34 1u6f_A Tcubp1, RNA-binding pro 99.6 9E-16 3.1E-20 146.9 13.8 84 125-208 39-122 (139)
35 2dnm_A SRP46 splicing factor; 99.6 2.8E-16 9.5E-21 142.7 9.2 82 126-207 11-92 (103)
36 1x4h_A RNA-binding protein 28; 99.6 5.1E-16 1.7E-20 142.6 10.9 83 126-208 13-101 (111)
37 2cpe_A RNA-binding protein EWS 99.6 6.1E-16 2.1E-20 142.8 11.3 84 125-208 12-103 (113)
38 1x5s_A Cold-inducible RNA-bind 99.6 3.7E-16 1.3E-20 141.5 9.7 83 126-208 10-92 (102)
39 2do4_A Squamous cell carcinoma 99.6 8.2E-16 2.8E-20 138.8 11.6 82 126-208 15-96 (100)
40 2cph_A RNA binding motif prote 99.6 5.7E-16 1.9E-20 141.3 10.7 84 125-208 12-97 (107)
41 2dgp_A Bruno-like 4, RNA bindi 99.6 4.4E-16 1.5E-20 142.0 9.7 83 126-208 11-96 (106)
42 3s7r_A Heterogeneous nuclear r 99.6 7.6E-16 2.6E-20 135.4 10.8 79 126-205 9-87 (87)
43 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.7E-16 5.9E-21 143.8 6.6 81 126-208 17-98 (100)
44 2ywk_A Putative RNA-binding pr 99.6 6.4E-16 2.2E-20 137.9 10.2 80 126-206 14-93 (95)
45 2div_A TRNA selenocysteine ass 99.6 5.2E-16 1.8E-20 139.7 9.6 82 126-207 7-93 (99)
46 3ulh_A THO complex subunit 4; 99.6 9E-16 3.1E-20 140.2 11.2 80 126-206 27-106 (107)
47 2dnh_A Bruno-like 5, RNA bindi 99.6 8.5E-16 2.9E-20 139.8 10.9 82 126-208 13-97 (105)
48 2cpf_A RNA binding motif prote 99.6 5.4E-16 1.8E-20 139.4 9.1 82 127-208 4-88 (98)
49 2err_A Ataxin-2-binding protei 99.6 5.9E-16 2E-20 142.7 9.4 82 125-208 26-107 (109)
50 2dng_A Eukaryotic translation 99.6 1.2E-15 4E-20 138.7 11.1 81 126-208 13-93 (103)
51 3ucg_A Polyadenylate-binding p 99.6 9.5E-16 3.3E-20 135.0 10.0 80 128-208 6-85 (89)
52 3ex7_B RNA-binding protein 8A; 99.6 7E-16 2.4E-20 145.2 9.7 82 127-208 21-102 (126)
53 2kxn_B Transformer-2 protein h 99.6 6.8E-16 2.3E-20 147.0 9.7 83 126-208 44-126 (129)
54 2m2b_A RNA-binding protein 10; 99.6 3.2E-16 1.1E-20 149.1 7.3 81 126-207 21-107 (131)
55 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.1E-15 7.2E-20 136.9 12.4 82 125-208 12-93 (103)
56 1s79_A Lupus LA protein; RRM, 99.6 3.9E-16 1.3E-20 143.0 7.5 79 126-206 9-87 (103)
57 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.4E-20 142.6 11.1 84 126-211 15-101 (118)
58 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.7E-20 141.3 11.2 86 126-213 13-99 (114)
59 1wi8_A EIF-4B, eukaryotic tran 99.6 1.3E-15 4.6E-20 138.5 10.9 80 127-208 14-94 (104)
60 4a8x_A RNA-binding protein wit 99.6 8.5E-16 2.9E-20 134.9 9.2 81 127-207 3-84 (88)
61 2wbr_A GW182, gawky, LD47780P; 99.6 2E-15 7E-20 133.8 11.5 81 127-213 6-86 (89)
62 2cqp_A RNA-binding protein 12; 99.6 9.4E-16 3.2E-20 137.8 9.5 82 126-207 13-94 (98)
63 2cqd_A RNA-binding region cont 99.6 2.1E-15 7.1E-20 140.0 12.0 82 125-207 14-95 (116)
64 1x4b_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 142.1 9.8 82 126-208 25-106 (116)
65 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.7E-20 143.9 10.0 88 126-214 23-110 (124)
66 2d9p_A Polyadenylate-binding p 99.6 1.3E-15 4.6E-20 138.2 10.1 81 126-208 13-93 (103)
67 2fy1_A RNA-binding motif prote 99.6 1.2E-15 4E-20 142.5 9.9 82 126-208 5-86 (116)
68 2cq3_A RNA-binding protein 9; 99.6 3.4E-15 1.2E-19 135.5 12.8 82 125-208 12-93 (103)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.5E-15 8.7E-20 143.3 12.5 80 126-205 61-140 (140)
70 2dhg_A TRNA selenocysteine ass 99.6 7.9E-16 2.7E-20 139.8 8.4 82 126-208 7-90 (104)
71 2dh8_A DAZ-associated protein 99.6 1.2E-15 4.1E-20 139.0 9.7 83 125-208 13-95 (105)
72 1p1t_A Cleavage stimulation fa 99.6 1.1E-15 3.8E-20 138.7 9.3 84 127-210 7-90 (104)
73 1x4e_A RNA binding motif, sing 99.6 3.2E-16 1.1E-20 137.2 5.6 80 127-206 4-83 (85)
74 2rs2_A Musashi-1, RNA-binding 99.6 1.2E-15 4.3E-20 140.6 9.7 83 125-208 22-104 (109)
75 2kt5_A RNA and export factor-b 99.6 5.9E-15 2E-19 138.7 14.5 82 126-208 33-114 (124)
76 2cqg_A TDP-43, TAR DNA-binding 99.6 3.3E-15 1.1E-19 135.6 12.3 82 125-208 12-93 (103)
77 2mss_A Protein (musashi1); RNA 99.6 6.7E-16 2.3E-20 131.9 7.2 75 130-205 1-75 (75)
78 2ek1_A RNA-binding protein 12; 99.6 8.8E-16 3E-20 137.0 8.1 80 127-206 14-93 (95)
79 2nlw_A Eukaryotic translation 99.6 1.4E-15 4.6E-20 139.2 9.5 78 127-206 14-98 (105)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.8E-15 6.2E-20 149.6 11.0 83 126-208 70-152 (165)
81 2dgv_A HnRNP M, heterogeneous 99.6 1.4E-15 4.8E-20 134.9 9.1 80 127-208 7-86 (92)
82 2dgw_A Probable RNA-binding pr 99.6 3E-15 1E-19 132.8 11.1 80 126-208 8-87 (91)
83 2dgx_A KIAA0430 protein; RRM d 99.6 2.6E-15 8.8E-20 135.0 10.6 79 127-208 8-90 (96)
84 2do0_A HnRNP M, heterogeneous 99.6 3.9E-15 1.3E-19 137.4 11.6 81 126-207 13-93 (114)
85 1uaw_A Mouse-musashi-1; RNP-ty 99.6 9.7E-16 3.3E-20 131.3 6.7 77 129-206 1-77 (77)
86 2lmi_A GRSF-1, G-rich sequence 99.6 1.4E-15 4.8E-20 139.6 8.2 87 125-213 8-97 (107)
87 2ki2_A SS-DNA binding protein 99.6 4.9E-16 1.7E-20 137.5 4.7 80 129-209 2-81 (90)
88 1fj7_A Nucleolin RBD1, protein 99.6 4.9E-16 1.7E-20 140.6 4.8 81 126-208 15-95 (101)
89 2a3j_A U1 small nuclear ribonu 99.6 2.3E-15 7.9E-20 143.2 9.6 80 126-208 27-110 (127)
90 2kn4_A Immunoglobulin G-bindin 99.6 3.2E-15 1.1E-19 146.0 10.9 82 127-208 69-150 (158)
91 3q2s_C Cleavage and polyadenyl 99.6 1.9E-15 6.3E-20 157.8 9.7 87 127-213 67-155 (229)
92 1x4a_A Splicing factor, argini 99.6 8.6E-15 2.9E-19 134.3 12.7 79 126-207 20-98 (109)
93 1h2v_Z 20 kDa nuclear CAP bind 99.6 4.4E-15 1.5E-19 145.1 11.4 82 126-207 37-118 (156)
94 2cpi_A CCR4-NOT transcription 99.6 2.2E-15 7.7E-20 139.1 8.7 83 127-209 14-102 (111)
95 2dis_A Unnamed protein product 99.6 2.3E-15 7.9E-20 137.9 8.6 82 127-208 7-92 (109)
96 1sjq_A Polypyrimidine tract-bi 99.6 2.2E-15 7.6E-20 138.5 8.4 76 127-208 15-92 (105)
97 2hgl_A HNRPF protein, heteroge 99.6 3.3E-15 1.1E-19 143.8 9.6 84 126-211 42-128 (136)
98 2jwn_A Embryonic polyadenylate 99.6 3.8E-15 1.3E-19 139.7 9.8 80 127-207 35-114 (124)
99 1x5o_A RNA binding motif, sing 99.6 9.1E-15 3.1E-19 135.1 12.2 82 125-207 22-111 (114)
100 1wg5_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 135.9 9.3 81 126-208 13-94 (104)
101 2krb_A Eukaryotic translation 99.6 1.7E-15 5.8E-20 131.7 6.4 74 128-203 1-81 (81)
102 2j8a_A Histone-lysine N-methyl 99.6 7.1E-15 2.4E-19 138.8 10.4 83 128-210 2-98 (136)
103 2cq1_A PTB-like protein L; RRM 99.6 9.4E-15 3.2E-19 133.5 10.7 78 125-208 12-91 (101)
104 3pgw_A U1-A; protein-RNA compl 99.6 5.2E-14 1.8E-18 149.7 18.2 78 125-207 204-282 (282)
105 2lea_A Serine/arginine-rich sp 99.6 2.6E-15 8.9E-20 144.0 7.1 82 126-207 45-126 (135)
106 2cpx_A Hypothetical protein FL 99.6 3.6E-15 1.2E-19 137.9 7.7 83 126-208 23-105 (115)
107 2fc9_A NCL protein; structure 99.6 1.1E-14 3.8E-19 131.6 10.7 80 125-208 12-91 (101)
108 1nu4_A U1A RNA binding domain; 99.6 3.6E-15 1.2E-19 133.5 7.4 80 126-208 6-89 (97)
109 3lqv_A PRE-mRNA branch site pr 99.6 9.7E-15 3.3E-19 135.1 10.4 79 127-208 7-85 (115)
110 3r27_A HnRNP L, heterogeneous 99.6 6.7E-15 2.3E-19 134.1 8.9 78 126-209 19-98 (100)
111 1wez_A HnRNP H', FTP-3, hetero 99.6 4.5E-15 1.6E-19 135.5 7.7 78 127-207 14-91 (102)
112 1x4c_A Splicing factor, argini 99.6 1.8E-14 6.3E-19 132.2 11.8 74 127-207 14-92 (108)
113 2fc8_A NCL protein; structure 99.6 1.2E-14 4.3E-19 131.4 10.4 80 126-208 13-92 (102)
114 1iqt_A AUF1, heterogeneous nuc 99.6 2.6E-15 8.9E-20 128.1 5.5 75 130-205 1-75 (75)
115 2dnn_A RNA-binding protein 12; 99.5 1.7E-14 5.7E-19 133.6 10.9 79 127-208 15-93 (109)
116 2jvo_A Nucleolar protein 3; nu 99.5 1.4E-14 4.7E-19 133.5 10.2 76 125-208 28-103 (108)
117 2la4_A Nuclear and cytoplasmic 99.5 1.2E-14 3.9E-19 131.5 9.4 75 127-207 26-100 (101)
118 2xnq_A Nuclear polyadenylated 99.5 1.8E-14 6.1E-19 130.0 10.6 74 126-207 20-94 (97)
119 2ytc_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.4E-19 125.0 10.3 75 126-206 10-85 (85)
120 1x4d_A Matrin 3; structural ge 99.5 8E-15 2.7E-19 134.2 7.5 75 127-207 14-91 (102)
121 2f3j_A RNA and export factor b 99.5 4.7E-14 1.6E-18 141.5 13.7 82 126-208 86-167 (177)
122 4f02_A Polyadenylate-binding p 99.5 1.8E-14 6.2E-19 147.8 10.9 82 127-208 14-95 (213)
123 2dnq_A RNA-binding protein 4B; 99.5 2.5E-14 8.6E-19 126.7 10.1 75 126-208 6-80 (90)
124 2jvr_A Nucleolar protein 3; RN 99.5 2.1E-14 7.1E-19 133.4 9.9 77 127-207 27-104 (111)
125 2e5j_A Methenyltetrahydrofolat 99.5 2.3E-14 8E-19 128.7 9.9 77 127-208 18-94 (97)
126 1why_A Hypothetical protein ri 99.5 3.2E-14 1.1E-18 127.8 10.8 76 127-208 16-93 (97)
127 2ad9_A Polypyrimidine tract-bi 99.5 1.2E-14 4.1E-19 136.7 8.2 76 127-208 30-107 (119)
128 1fjc_A Nucleolin RBD2, protein 99.5 9.1E-15 3.1E-19 130.8 7.0 79 125-208 13-91 (96)
129 2xs2_A Deleted in azoospermia- 99.5 6.5E-15 2.2E-19 133.4 5.9 79 127-208 8-86 (102)
130 1x4g_A Nucleolysin TIAR; struc 99.5 2.5E-14 8.6E-19 131.3 9.9 77 126-208 23-99 (109)
131 3md3_A Nuclear and cytoplasmic 99.5 5.1E-14 1.8E-18 136.5 12.2 81 127-207 86-166 (166)
132 2lcw_A RNA-binding protein FUS 99.3 1.1E-15 3.8E-20 142.0 0.0 83 126-208 5-95 (116)
133 3egn_A RNA-binding protein 40; 99.5 7.6E-15 2.6E-19 141.3 5.8 82 126-207 43-129 (143)
134 1x4f_A Matrin 3; structural ge 99.5 2.7E-14 9.3E-19 132.9 9.2 78 125-208 22-102 (112)
135 2dha_A FLJ20171 protein; RRM d 99.5 2.1E-14 7.1E-19 135.8 8.4 87 126-214 21-111 (123)
136 2dgt_A RNA-binding protein 30; 99.5 6.4E-14 2.2E-18 124.5 11.0 75 126-208 8-82 (92)
137 1wex_A Hypothetical protein (r 99.5 4E-14 1.4E-18 130.0 9.7 77 126-208 13-91 (104)
138 2cpj_A Non-POU domain-containi 99.5 4.3E-14 1.5E-18 127.4 9.6 77 126-208 13-89 (99)
139 1whx_A Hypothetical protein ri 99.5 1.9E-14 6.7E-19 133.1 7.1 77 127-209 9-85 (111)
140 2hvz_A Splicing factor, argini 99.5 2E-14 6.7E-19 130.0 6.9 75 129-208 1-75 (101)
141 2dgu_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 127.2 10.4 74 127-208 10-83 (103)
142 2e44_A Insulin-like growth fac 99.5 4.6E-14 1.6E-18 126.2 9.0 78 127-208 14-92 (96)
143 2hgm_A HNRPF protein, heteroge 99.5 2.8E-14 9.5E-19 135.6 7.9 80 127-209 41-122 (126)
144 2i2y_A Fusion protein consists 99.5 5.2E-14 1.8E-18 136.6 9.9 77 127-208 72-148 (150)
145 1wf1_A RNA-binding protein RAL 99.5 1.3E-13 4.4E-18 126.8 11.9 73 126-206 25-98 (110)
146 1fxl_A Paraneoplastic encephal 99.5 7.2E-14 2.4E-18 135.6 10.8 81 128-208 2-82 (167)
147 2dnp_A RNA-binding protein 14; 99.5 8.2E-14 2.8E-18 123.3 9.9 75 126-208 7-81 (90)
148 2g4b_A Splicing factor U2AF 65 99.5 8.1E-14 2.8E-18 136.5 10.8 79 128-206 94-172 (172)
149 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.6E-18 123.5 12.0 75 126-208 13-89 (99)
150 1b7f_A Protein (SXL-lethal pro 99.5 6.6E-14 2.3E-18 136.4 9.8 82 127-208 2-83 (168)
151 2cqh_A IGF-II mRNA-binding pro 99.5 5.5E-14 1.9E-18 125.1 8.0 75 127-208 7-83 (93)
152 2e5g_A U6 snRNA-specific termi 99.5 1.1E-13 3.7E-18 123.7 9.5 76 127-208 7-82 (94)
153 2kvi_A Nuclear polyadenylated 99.5 5.7E-14 1.9E-18 126.1 7.7 75 126-208 8-83 (96)
154 1l3k_A Heterogeneous nuclear r 99.5 1.4E-13 4.6E-18 137.7 10.3 82 126-208 11-92 (196)
155 1x5p_A Negative elongation fac 99.5 3.4E-13 1.2E-17 121.1 11.7 74 127-208 14-87 (97)
156 2hgn_A Heterogeneous nuclear r 99.5 2.4E-14 8.3E-19 138.2 4.3 80 126-208 44-123 (139)
157 1wg1_A KIAA1579 protein, homol 99.4 1.3E-13 4.4E-18 121.8 8.4 75 127-208 4-78 (88)
158 2cjk_A Nuclear polyadenylated 99.4 7.3E-14 2.5E-18 136.1 7.4 80 128-208 87-166 (167)
159 2qfj_A FBP-interacting repress 99.4 1.5E-13 5.1E-18 139.6 10.0 82 127-208 124-205 (216)
160 2yh0_A Splicing factor U2AF 65 99.4 2.7E-13 9.1E-18 135.8 11.7 83 126-208 112-194 (198)
161 4f02_A Polyadenylate-binding p 99.4 1.7E-13 5.9E-18 140.5 10.1 79 128-208 103-181 (213)
162 3d2w_A TAR DNA-binding protein 99.4 2.3E-13 8E-18 120.9 9.4 74 126-208 9-84 (89)
163 2diu_A KIAA0430 protein; struc 99.4 2.1E-13 7.3E-18 122.1 8.8 70 128-207 8-83 (96)
164 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-13 6.3E-18 126.9 8.7 77 127-206 7-86 (114)
165 3beg_B Splicing factor, argini 99.4 1.4E-13 4.7E-18 128.1 7.5 74 127-207 15-93 (115)
166 1l3k_A Heterogeneous nuclear r 99.4 3E-13 1E-17 135.2 10.5 81 127-208 103-183 (196)
167 2cq2_A Hypothetical protein LO 99.4 2.8E-13 9.6E-18 126.3 8.8 74 127-206 24-104 (114)
168 3md3_A Nuclear and cytoplasmic 99.4 3.4E-13 1.1E-17 130.7 9.5 78 129-207 1-78 (166)
169 1b7f_A Protein (SXL-lethal pro 99.4 6.1E-13 2.1E-17 129.5 10.8 79 127-205 88-168 (168)
170 2qfj_A FBP-interacting repress 99.4 4.2E-13 1.4E-17 136.2 9.7 82 127-208 27-108 (216)
171 2hzc_A Splicing factor U2AF 65 99.4 5.2E-13 1.8E-17 116.9 8.7 71 127-204 5-86 (87)
172 1sjr_A Polypyrimidine tract-bi 99.4 4.9E-13 1.7E-17 132.2 9.0 77 128-208 46-124 (164)
173 1fxl_A Paraneoplastic encephal 99.4 6.9E-13 2.4E-17 128.6 9.8 79 127-205 87-167 (167)
174 3zzy_A Polypyrimidine tract-bi 99.4 7.5E-13 2.6E-17 126.2 9.7 77 127-208 27-106 (130)
175 3tyt_A Heterogeneous nuclear r 99.4 8E-13 2.7E-17 135.5 10.4 77 127-208 3-80 (205)
176 2pe8_A Splicing factor 45; RRM 99.4 1.8E-12 6E-17 119.2 11.6 81 127-207 7-93 (105)
177 2cjk_A Nuclear polyadenylated 99.4 5.7E-13 1.9E-17 129.8 8.4 80 127-208 2-81 (167)
178 3nmr_A Cugbp ELAV-like family 99.4 8.1E-13 2.8E-17 129.3 9.2 78 127-205 94-174 (175)
179 2bz2_A Negative elongation fac 99.4 9.1E-13 3.1E-17 124.0 9.0 75 126-208 37-111 (121)
180 3nmr_A Cugbp ELAV-like family 99.4 1.1E-12 3.7E-17 128.4 9.3 81 127-207 2-87 (175)
181 2e5i_A Heterogeneous nuclear r 99.4 1.6E-12 5.5E-17 123.0 10.1 75 128-208 25-102 (124)
182 3pgw_A U1-A; protein-RNA compl 99.4 1.7E-12 5.7E-17 138.1 10.9 81 125-208 6-90 (282)
183 1fje_B Nucleolin RBD12, protei 99.4 1.6E-12 5.3E-17 128.0 9.7 77 127-208 98-174 (175)
184 1wf0_A TDP-43, TAR DNA-binding 99.3 7E-13 2.4E-17 116.8 6.2 75 127-208 4-78 (88)
185 2voo_A Lupus LA protein; RNA-b 99.3 1.9E-12 6.4E-17 131.6 10.1 77 128-206 109-185 (193)
186 2ghp_A U4/U6 snRNA-associated 99.3 1.7E-12 5.9E-17 138.6 9.5 83 125-208 207-291 (292)
187 3smz_A Protein raver-1, ribonu 99.3 5E-12 1.7E-16 134.5 11.6 82 127-208 94-175 (284)
188 2adc_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 132.7 9.0 77 127-208 33-110 (229)
189 3smz_A Protein raver-1, ribonu 99.3 4.9E-12 1.7E-16 134.6 10.4 84 126-210 182-266 (284)
190 3u1l_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 133.9 8.7 78 125-208 131-229 (240)
191 1fje_B Nucleolin RBD12, protei 99.3 1.2E-12 4.1E-17 128.8 5.0 82 125-208 10-91 (175)
192 3tyt_A Heterogeneous nuclear r 99.2 7.7E-12 2.6E-16 128.1 8.4 78 126-205 121-204 (205)
193 2dit_A HIV TAT specific factor 99.2 2E-11 6.9E-16 112.8 10.4 78 127-208 14-102 (112)
194 1qm9_A Polypyrimidine tract-bi 99.2 6.5E-12 2.2E-16 126.3 7.2 76 128-208 3-79 (198)
195 3v4m_A Splicing factor U2AF 65 99.2 3.2E-11 1.1E-15 110.7 10.4 82 127-208 4-97 (105)
196 3sde_A Paraspeckle component 1 99.2 2.6E-11 8.9E-16 128.2 11.0 76 126-207 20-95 (261)
197 1qm9_A Polypyrimidine tract-bi 99.2 2.4E-11 8.3E-16 122.1 9.7 78 126-208 118-197 (198)
198 2yh0_A Splicing factor U2AF 65 99.2 3.5E-12 1.2E-16 127.6 3.4 80 127-207 3-87 (198)
199 1jmt_A Splicing factor U2AF 35 99.2 7.9E-12 2.7E-16 114.5 5.2 73 132-205 19-103 (104)
200 3sde_A Paraspeckle component 1 99.2 2.8E-11 9.6E-16 127.9 9.8 80 127-207 95-178 (261)
201 2ghp_A U4/U6 snRNA-associated 99.2 2.6E-11 8.9E-16 129.5 9.3 81 127-208 116-197 (292)
202 2adc_A Polypyrimidine tract-bi 99.2 4.5E-11 1.5E-15 123.8 9.3 78 126-208 149-228 (229)
203 3ue2_A Poly(U)-binding-splicin 99.2 8.2E-11 2.8E-15 110.3 9.6 81 127-207 19-108 (118)
204 2g4b_A Splicing factor U2AF 65 99.2 5.6E-11 1.9E-15 116.1 8.7 73 127-206 3-86 (172)
205 3tht_A Alkylated DNA repair pr 99.0 3.6E-10 1.2E-14 124.4 9.7 76 125-206 15-97 (345)
206 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.7E-14 99.1 10.2 64 138-208 27-90 (100)
207 3s6e_A RNA-binding protein 39; 99.0 3.6E-09 1.2E-13 98.6 11.5 77 128-208 7-93 (114)
208 2dnr_A Synaptojanin-1; RRM dom 98.8 5E-09 1.7E-13 93.1 7.6 75 127-210 6-88 (91)
209 1owx_A Lupus LA protein, SS-B, 98.7 3.2E-08 1.1E-12 92.9 10.3 83 126-214 16-102 (121)
210 1ufw_A Synaptojanin 2; RNP dom 98.6 1E-07 3.4E-12 85.2 7.6 72 126-206 13-93 (95)
211 3dxb_A Thioredoxin N-terminall 98.4 2.4E-07 8.2E-12 95.2 7.7 68 140-207 141-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.8 6.8E-05 2.3E-09 68.4 9.4 72 127-204 20-96 (117)
213 1wey_A Calcipressin 1; structu 97.0 0.0018 6.1E-08 58.8 8.2 74 127-206 4-82 (104)
214 1uw4_A UPF3X; nonsense mediate 95.3 0.055 1.9E-06 48.0 8.3 68 129-196 2-71 (91)
215 3p3d_A Nucleoporin 53; structu 95.3 0.026 8.8E-07 53.3 6.3 88 128-217 7-108 (132)
216 1whv_A Poly(A)-specific ribonu 95.1 0.093 3.2E-06 47.0 9.0 55 128-191 16-70 (100)
217 2dhx_A Poly (ADP-ribose) polym 95.0 0.077 2.6E-06 48.0 8.3 71 127-206 7-82 (104)
218 1wwh_A Nucleoporin 35, nucleop 94.9 0.11 3.6E-06 48.4 9.1 74 127-208 23-97 (119)
219 2kn4_A Immunoglobulin G-bindin 93.5 0.052 1.8E-06 51.9 4.3 45 157-203 2-46 (158)
220 3ctr_A Poly(A)-specific ribonu 92.9 0.11 3.7E-06 46.7 4.9 54 129-191 7-60 (101)
221 2i2y_A Fusion protein consists 92.8 0.059 2E-06 51.2 3.5 42 166-208 9-51 (150)
222 3pgw_S U1-70K; protein-RNA com 91.6 0.019 6.4E-07 65.1 -2.1 6 201-206 148-153 (437)
223 2l08_A Regulator of nonsense t 88.9 0.47 1.6E-05 42.5 5.0 69 128-196 9-79 (97)
224 3pq1_A Poly(A) RNA polymerase; 88.2 0.28 9.6E-06 55.8 3.9 55 128-188 53-107 (464)
225 3d45_A Poly(A)-specific ribonu 66.3 12 0.00042 42.9 8.3 55 128-191 440-494 (507)
226 3m91_B Prokaryotic ubiquitin-l 63.9 2.4 8.3E-05 32.0 1.2 24 799-822 15-38 (44)
227 2v75_A Nuclear polyadenylated 49.5 49 0.0017 29.3 7.2 61 763-823 6-72 (104)
228 3qks_C DNA double-strand break 42.7 11 0.00039 26.6 1.7 25 771-795 7-31 (34)
229 2g0c_A ATP-dependent RNA helic 38.0 50 0.0017 27.2 5.5 68 130-206 2-75 (76)
230 3m9d_G Prokaryotic ubiquitin-l 32.0 6.2 0.00021 32.5 -1.1 24 799-822 39-62 (68)
231 4f25_A Polyadenylate-binding p 23.0 18 0.0006 32.3 0.0 17 127-143 96-112 (115)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=287.73 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred hHHhhhhcCCCCchhhhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhh
Q 003161 733 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 812 (843)
Q Consensus 733 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld 812 (843)
|+++||++||++|++||+|+|+|++||.++|+++|||||++||+||||++|++|||||+++|.+|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 003161 813 DEAEMFVLKMWRMLIFEIKKVETGLA 838 (843)
Q Consensus 813 ~~a~~fv~~lwrllife~~~~~~gl~ 838 (843)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999996
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.86 E-value=3.1e-22 Score=183.77 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=84.0
Q ss_pred CCchhhhceeccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhc-cCChHHHHHHHHHhhh-HHHHHHHH
Q 003161 743 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 820 (843)
Q Consensus 743 ~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~p~~l~~~l~~~ld-~~a~~fv~ 820 (843)
+.++.+|+++|||..|+-. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||+ ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999765 4799999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 003161 821 KMWRMLIFEIKKVETGLAL 839 (843)
Q Consensus 821 ~lwrllife~~~~~~gl~~ 839 (843)
+||+||||. .+...||..
T Consensus 81 eLW~LLi~a-q~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIPS 98 (111)
T ss_dssp HHHHHHHHH-TTSSSSCCH
T ss_pred HHHHHHHHh-hcCCcCcCH
Confidence 999999975 788888863
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=3e-21 Score=219.65 Aligned_cols=85 Identities=19% Similarity=0.374 Sum_probs=80.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.||+.+|..+|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chhhH
Q 003161 206 TREYL 210 (843)
Q Consensus 206 ~~k~l 210 (843)
..+.+
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86644
No 4
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=159.26 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=65.0
Q ss_pred hhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003161 764 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 831 (843)
Q Consensus 764 ~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lwrllife~~ 831 (843)
.+.|||||++||+||||++|++||+||+++|..|.+|+.|+++|++|||++|..||.+||+||++-+.
T Consensus 15 l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~ 82 (92)
T 1x4q_A 15 LDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRS 82 (92)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999999999999997663
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=156.01 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=78.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..+++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 6
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=163.39 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=84.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCC--ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G--~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..++|||||||+.+++++|+.+|+.|| .|..|.|+.|+.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHh
Q 003161 205 ATREYLERYVDKK 217 (843)
Q Consensus 205 A~~k~le~~~~kk 217 (843)
|.++.+..|....
T Consensus 134 a~~~~~~~~e~~~ 146 (156)
T 3n9u_C 134 ATRQNLSQFEAQA 146 (156)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCCCcchhhhhhc
Confidence 9998887776543
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=152.24 Aligned_cols=82 Identities=15% Similarity=0.234 Sum_probs=79.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.|+.||+++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.7e-16 Score=147.72 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
+.
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 73
No 9
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=147.29 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=75.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEecc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVDQA 205 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L-nG~~i~Gr~L~V~~A 205 (843)
+++|||+|||+.+|+++|+.+|+.|| .|.+|+|++++.||.++|||||+|.+.++|.+||..| |+..|+|++|.|.+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999977 567899999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=140.16 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=77.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.4e-16 Score=138.52 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=77.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999854
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=139.91 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=8.9e-17 Score=145.26 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=75.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCc--eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQEL 200 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~--I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~----~i~Gr~L 200 (843)
.-.||||+|||+.+|+++|+.+|+.||. |..|++++|+.||.++|||||+|.+.++|.+||..|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3579999999999999999999999995 679999999999999999999999999999999999997 5999999
Q ss_pred EEeccch
Q 003161 201 MVDQATR 207 (843)
Q Consensus 201 ~V~~A~~ 207 (843)
.|+||..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999863
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.8e-16 Score=138.41 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=77.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=5.5e-17 Score=147.33 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=78.7
Q ss_pred CCcEEEEccCCC------CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 003161 127 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 199 (843)
Q Consensus 127 ~~~tLfVgNLp~------~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G-r~ 199 (843)
..++|||+|||+ .+++.+|+.+|+.||.|.+|.|+.++.||+++|||||+|.+.++|.+||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeccchh
Q 003161 200 LMVDQATRE 208 (843)
Q Consensus 200 L~V~~A~~k 208 (843)
|.|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999854
No 16
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=142.95 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=77.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeE--------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~--------vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr 198 (843)
+.++|||+|||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4789999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEeccc
Q 003161 199 ELMVDQAT 206 (843)
Q Consensus 199 ~L~V~~A~ 206 (843)
.|.|.+|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=3.4e-16 Score=145.08 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=2.1e-16 Score=141.75 Aligned_cols=82 Identities=27% Similarity=0.440 Sum_probs=78.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 19
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=147.02 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=78.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34789999999999999999999999999999999999989999999999999999999999 89999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=143.08 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 854
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=140.61 Aligned_cols=82 Identities=26% Similarity=0.480 Sum_probs=78.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=6.9e-17 Score=143.52 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=73.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCC--ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G--~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+|||+|||+.+++++|+.+|+.|| .|.++.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=141.38 Aligned_cols=82 Identities=24% Similarity=0.394 Sum_probs=78.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 357899999999999999999999999999999999999899999999999999999999999 9999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 24
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=145.15 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=79.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=138.60 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=78.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 6
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=140.68 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 27
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.65 E-value=5.4e-16 Score=143.59 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=79.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34589999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9844
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.65 E-value=3.3e-16 Score=143.90 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=79.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 753
No 29
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=140.86 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=78.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEE-EEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~v-kiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+ .|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 744
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=2.4e-16 Score=146.69 Aligned_cols=79 Identities=19% Similarity=0.399 Sum_probs=74.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||+|||+.+++++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999984 56899999999999999999999999999999999999874
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=142.27 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4e-16 Score=141.68 Aligned_cols=83 Identities=20% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 93 ~~~ 95 (103)
T 2cq0_A 93 KPS 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 33
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=143.39 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=78.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 102 ~~ 103 (106)
T 1p27_B 102 VR 103 (106)
T ss_dssp ES
T ss_pred CC
Confidence 54
No 34
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=9e-16 Score=146.89 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=79.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8843
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=142.71 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.1e-16 Score=142.59 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 199 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln------G~~i~Gr~ 199 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 347899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEeccchh
Q 003161 200 LMVDQATRE 208 (843)
Q Consensus 200 L~V~~A~~k 208 (843)
|.|.++..+
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999854
No 37
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=142.82 Aligned_cols=84 Identities=21% Similarity=0.342 Sum_probs=79.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCcee--------EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~--------~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
....++|||+|||+.+++++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34579999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEeccchh
Q 003161 197 GQELMVDQATRE 208 (843)
Q Consensus 197 Gr~L~V~~A~~k 208 (843)
|+.|.|.++..+
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999998844
No 38
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=141.46 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=79.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 744
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=138.84 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=78.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 40
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=141.32 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=79.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeec-CCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMV 202 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d-~~tGk~kGfgFVeF~s~e~A~~Al~~L-nG~~i~Gr~L~V 202 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 345799999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|..+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999843
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=4.4e-16 Score=141.98 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELMV 202 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i---~Gr~L~V 202 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..| .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999999998999999999999999999999999999998 8999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|..+
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 998743
No 42
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=7.6e-16 Score=135.36 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=75.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||. ++|..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 457899999999999999999999999999999999999899999999999999999999997 6899999999999876
No 43
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=143.83 Aligned_cols=81 Identities=22% Similarity=0.436 Sum_probs=74.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecC-CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~-~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...++|||+|||+.+++++|+.+|+.|| |..|.|+.++ .+|+++|||||+|.+.++|.+|| .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3479999999999999999999999999 9999999997 68999999999999999999999 8999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8753
No 44
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=6.4e-16 Score=137.94 Aligned_cols=80 Identities=24% Similarity=0.462 Sum_probs=76.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357899999999999999999999999999999999997 4999999999999999999999999999999999999998
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 6
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.2e-16 Score=139.74 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=78.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCcee-EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 200 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~-~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~----L 200 (843)
.+.++|||+|||+.+++++|+.+|+.||.|. .+.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3478999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEeccch
Q 003161 201 MVDQATR 207 (843)
Q Consensus 201 ~V~~A~~ 207 (843)
.|.||..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999874
No 46
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=9e-16 Score=140.15 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999988
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=8.5e-16 Score=139.84 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=77.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELMV 202 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G---r~L~V 202 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|..+
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 999854
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=139.38 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=77.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCC---CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~---tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++. ||.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 478999999999999999999999999999999999876 66999999999999999999999999999999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
++..+
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98744
No 49
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.9e-16 Score=142.70 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=76.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||..+++++|+.+|+.||.|..|.++.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999984 55999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9865
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.2e-15 Score=138.67 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=76.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3478999999999999999999999997 999999999989999999999999999999999 79999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=9.5e-16 Score=135.00 Aligned_cols=80 Identities=25% Similarity=0.407 Sum_probs=76.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999999874
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=7e-16 Score=145.17 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=78.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 101 ~~ 102 (126)
T 3ex7_B 101 VR 102 (126)
T ss_dssp ES
T ss_pred CC
Confidence 44
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=6.8e-16 Score=146.97 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=79.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 754
No 54
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=149.12 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=77.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeE--EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 199 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~--vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~----~i~Gr~ 199 (843)
...++|||+|||+.+|+++|+.+|+.||.|.. |+|+.|+.+|+++|||||+|.+. +|.+||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEeccch
Q 003161 200 LMVDQATR 207 (843)
Q Consensus 200 L~V~~A~~ 207 (843)
|.|.+|..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99999985
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=136.87 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=76.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3457999999999999999999999999999999999984 34789999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 9854
No 56
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=142.96 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=75.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||||||+.+|+++|+.+|+.||.|.+|.|+.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3478999999999999999999999999999999999976 9999999999999999999999 9999999999999987
Q ss_pred c
Q 003161 206 T 206 (843)
Q Consensus 206 ~ 206 (843)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 6
No 57
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=142.61 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=78.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCc---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~---I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
...++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred eccchhhHH
Q 003161 203 DQATREYLE 211 (843)
Q Consensus 203 ~~A~~k~le 211 (843)
.++..+.+.
T Consensus 93 ~~a~~~~~~ 101 (118)
T 2db1_A 93 FKSHRTEMD 101 (118)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 999876553
No 58
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=141.26 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=79.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCce-eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I-~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+.++|||+|||+.+|+++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 347899999999999999999999999999 899999997 999999999999999999999996 99999999999999
Q ss_pred cchhhHHHH
Q 003161 205 ATREYLERY 213 (843)
Q Consensus 205 A~~k~le~~ 213 (843)
|..+.....
T Consensus 91 a~~~~~~~~ 99 (114)
T 2cpy_A 91 VTLEDMREI 99 (114)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHHH
Confidence 997755443
No 59
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=138.53 Aligned_cols=80 Identities=25% Similarity=0.466 Sum_probs=76.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCC-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~t-Gk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|+|+.|.|.+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 468999999999999999999999999 999999999887 999999999999999999999 89999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 92 ~~~ 94 (104)
T 1wi8_A 92 DQA 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 743
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=134.86 Aligned_cols=81 Identities=23% Similarity=0.435 Sum_probs=76.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCC-CcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk-~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..++|||+|||+.+++++|+.+|+.||.|..+.++.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999999987766 9999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 61
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2e-15 Score=133.81 Aligned_cols=81 Identities=11% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.+..||||||++.+|+++|+.+|.+||+|.+++++. ++|||||+|.+.++|.+|+..|||..|+|++|.|++|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367999999999999999999999999999999865 68999999999999999999999999999999999997
Q ss_pred hhhHHHH
Q 003161 207 REYLERY 213 (843)
Q Consensus 207 ~k~le~~ 213 (843)
...+..+
T Consensus 80 e~~~~~~ 86 (89)
T 2wbr_A 80 ENEVQSI 86 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.4e-16 Score=137.80 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=77.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.1e-15 Score=140.02 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=78.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..||+ .|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44579999999999999999999999999999999999998999999999999999999999999999 89999999999
Q ss_pred cch
Q 003161 205 ATR 207 (843)
Q Consensus 205 A~~ 207 (843)
|..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 874
No 64
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=142.09 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=77.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999998999999999999999999999997 999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 854
No 65
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=143.95 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=80.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+|+++|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 346899999999999999999999999999987777776799999999999999999999999 9999999999999999
Q ss_pred chhhHHHHH
Q 003161 206 TREYLERYV 214 (843)
Q Consensus 206 ~~k~le~~~ 214 (843)
.++.+....
T Consensus 102 ~~~~~~~~~ 110 (124)
T 1wel_A 102 TKKGMLEKI 110 (124)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 987654443
No 66
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=138.19 Aligned_cols=81 Identities=27% Similarity=0.359 Sum_probs=77.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45889999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 854
No 67
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=142.49 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=78.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 843
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=135.46 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999985 34899999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 9854
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=143.30 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999986
No 70
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.9e-16 Score=139.81 Aligned_cols=82 Identities=20% Similarity=0.343 Sum_probs=78.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhc-CCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~-~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~-i~Gr~L~V~ 203 (843)
.+.++|||+|||+.+++++|+.+|+. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
++.++
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98744
No 71
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=138.98 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=78.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34579999999999999999999999999999999999998999999999999999999999998 99999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8854
No 72
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=138.69 Aligned_cols=84 Identities=33% Similarity=0.557 Sum_probs=79.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred hhhH
Q 003161 207 REYL 210 (843)
Q Consensus 207 ~k~l 210 (843)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6543
No 73
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-16 Score=137.15 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=76.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999998764
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=140.62 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=75.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 445789999999999999999999999999999999999989999999999999999999999965 5999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=5.9e-15 Score=138.68 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 854
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-15 Score=135.57 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=76.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3457899999999999999999999999999999999998899999999999999999999999 58899999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9854
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.61 E-value=6.7e-16 Score=131.87 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=72.7
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 9999999999999986
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=8.8e-16 Score=137.04 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999876
No 79
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=139.23 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=73.7
Q ss_pred CCcEEEEccCCCCC------cHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 003161 127 PQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 199 (843)
Q Consensus 127 ~~~tLfVgNLp~~v------te~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr-~ 199 (843)
..++|||+|||+.+ ++.+|+.+|+.||.|..|.|+. .+|.++|||||+|.+.++|.+||..|||..|+|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 47899999999999 7899999999999999999983 5899999999999999999999999999999998 9
Q ss_pred EEEeccc
Q 003161 200 LMVDQAT 206 (843)
Q Consensus 200 L~V~~A~ 206 (843)
|.|.+|.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999986
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=1.8e-15 Score=149.57 Aligned_cols=83 Identities=24% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+..+|..||..|||..|+|+.|.|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 854
No 81
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=1.4e-15 Score=134.91 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.|+.+ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4789999999999999999999999999999999985 89999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=132.80 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=75.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.| .|..|.|+.+ .+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 357899999999999999999999999 9999999999 799999999999999999999999 9999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.6e-15 Score=135.04 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=74.1
Q ss_pred CCcEEEEccCCCCCcHHHHH----HHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~----~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
..++|||+|||+.+++++|+ .+|+.||.|..|.|+.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 46899999999999999999 99999999999999998654 899999999999999999999999999999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|...
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 998743
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=137.42 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=77.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 347899999999999999999999999999999999996 7999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 73
No 85
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=9.7e-16 Score=131.26 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=74.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+| ..|+|+.|.|.+|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 589999999999999999999999999999999998899999999999999999999999999 99999999999873
No 86
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=139.61 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCc---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~---I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
....++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999998 89999999975 9999999999999999999999 999999999999
Q ss_pred EeccchhhHHHH
Q 003161 202 VDQATREYLERY 213 (843)
Q Consensus 202 V~~A~~k~le~~ 213 (843)
|.++..+.+...
T Consensus 86 V~~a~~~~~~~~ 97 (107)
T 2lmi_A 86 VYEINNEDVDAL 97 (107)
T ss_dssp CEECCHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999997765433
No 87
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=4.9e-16 Score=137.47 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=74.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999999999999865
Q ss_pred h
Q 003161 209 Y 209 (843)
Q Consensus 209 ~ 209 (843)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 88
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=4.9e-16 Score=140.57 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=75.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 777777789999999999999999999999 9999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 89
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=143.17 Aligned_cols=80 Identities=13% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCCcEEEEccCCCCCcHHHHH----HHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~----~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.+.. +|+++|||||+|.+.++|..||..|||..|.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 347899999999999998865 7999999999987743 789999999999999999999999999999999999
Q ss_pred Eeccchh
Q 003161 202 VDQATRE 208 (843)
Q Consensus 202 V~~A~~k 208 (843)
|.||..+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999854
No 90
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.59 E-value=3.2e-15 Score=145.96 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=78.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 149 ~~ 150 (158)
T 2kn4_A 149 YG 150 (158)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 91
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=1.9e-15 Score=157.81 Aligned_cols=87 Identities=20% Similarity=0.369 Sum_probs=81.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCC--ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G--~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..++|||+||++.+|+++|+.+|+.|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHH
Q 003161 205 ATREYLERY 213 (843)
Q Consensus 205 A~~k~le~~ 213 (843)
|.+..+..+
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 997766544
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.6e-15 Score=134.32 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3578999999999999999999999999999999955 4678999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=4.4e-15 Score=145.09 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=79.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=139.15 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=76.8
Q ss_pred CCcEEEEccCCCCCcHHHHH---HHHhcCCceeEEEEeecCCCC---CCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 127 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~---~lFs~~G~I~~vkiv~d~~tG---k~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
..++|||+|||+.+++++|. .+|+.||.|..|.|+.+..+| .++|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 999999999999999987654 566999999999999999999999999999999
Q ss_pred EEeccchhh
Q 003161 201 MVDQATREY 209 (843)
Q Consensus 201 ~V~~A~~k~ 209 (843)
.|.+|..+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998663
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=137.89 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=77.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCc-eeEEEEe-ecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMV 202 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~-I~~vkiv-~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln--G~~i~Gr~L~V 202 (843)
+.++|||+|||+.+++++|+.+|..||. |..+.++ .+..+|.++|||||+|.+.++|..||..|| +..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999998 788889999999999999999999999996 59999999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|.++
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 999744
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=138.55 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln--G~~i~Gr~L~V~~ 204 (843)
+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|+ |..|.|++|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4789999999999999999999999999999999875 6999999999999999999886 4789999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 9855
No 97
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=3.3e-15 Score=143.81 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCc---eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~---I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
...++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34789999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred eccchhhHH
Q 003161 203 DQATREYLE 211 (843)
Q Consensus 203 ~~A~~k~le 211 (843)
.++..+.+.
T Consensus 120 ~~a~~~e~~ 128 (136)
T 2hgl_A 120 FKSHRTEMD 128 (136)
T ss_dssp EECCHHHHH
T ss_pred EECChHHHH
Confidence 999877554
No 98
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=3.8e-15 Score=139.74 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=76.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 99
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.1e-15 Score=135.11 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=77.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--------C
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 196 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i--------~ 196 (843)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999999 5
Q ss_pred CeEEEEeccch
Q 003161 197 GQELMVDQATR 207 (843)
Q Consensus 197 Gr~L~V~~A~~ 207 (843)
|++|.|.||.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999874
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=135.91 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=75.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeE-EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~-vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...++|||+|||+.+++++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34789999999999999999999999999987 889888 7999999999999999999999996 99999999999998
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+.++
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8754
No 101
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=131.70 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=68.9
Q ss_pred CcEEEEccCCCCC------cHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003161 128 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (843)
Q Consensus 128 ~~tLfVgNLp~~v------te~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr-~L 200 (843)
.++|||+|||+.+ ++++|+.+|+.||.|..+.++. .+|.++|||||+|.+.++|..||..|||..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3799999999999 6799999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EEe
Q 003161 201 MVD 203 (843)
Q Consensus 201 ~V~ 203 (843)
.|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 102
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.1e-15 Score=138.82 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred CcEEEEccC----CCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCC----HHH----HHHHHH--HhCCc
Q 003161 128 QTKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKF 193 (843)
Q Consensus 128 ~~tLfVgNL----p~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s----~e~----A~~Al~--~LnG~ 193 (843)
+++|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.+ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 379999999 9999999999999999999999999999999999999999996 434 788988 78999
Q ss_pred eeCCeEEEEeccchhhH
Q 003161 194 NIDGQELMVDQATREYL 210 (843)
Q Consensus 194 ~i~Gr~L~V~~A~~k~l 210 (843)
.|+|+.|+|.....-.+
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999977664444
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.4e-15 Score=133.46 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMV 202 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L--nG~~i~Gr~L~V 202 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..| ++..|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988764 799999999999999999977 478899999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.+|..+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 999855
No 104
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=5.2e-14 Score=149.68 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 203 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~ 203 (843)
..+.++|||+|||..+++++|+.+|+.||.|..|.|+.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4457899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred ccch
Q 003161 204 QATR 207 (843)
Q Consensus 204 ~A~~ 207 (843)
||.+
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9863
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.56 E-value=2.6e-15 Score=143.96 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.6e-15 Score=137.89 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=72.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999954433333238999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 843
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=131.64 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.| .++.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3458999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9754
No 108
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=3.6e-15 Score=133.53 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=74.6
Q ss_pred CCCcEEEEccCCCCCcHHHHH----HHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~----~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 357899999999999999999 9999999999999873 688899999999999999999999999999999999
Q ss_pred Eeccchh
Q 003161 202 VDQATRE 208 (843)
Q Consensus 202 V~~A~~k 208 (843)
|.++..+
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999854
No 109
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=9.7e-15 Score=135.14 Aligned_cols=79 Identities=13% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4789999999999999999999999999999999865 5669999999999999999999999999999999999998
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=6.7e-15 Score=134.13 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~--i~Gr~L~V~ 203 (843)
.+.++|||+|||+.+|+++|+.+|+.||.|.++.+++ .+|||||+|.+.++|..||..|||.. |.|++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3578999999999999999999999999999999975 36999999999999999999999876 789999999
Q ss_pred ccchhh
Q 003161 204 QATREY 209 (843)
Q Consensus 204 ~A~~k~ 209 (843)
++..+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998653
No 111
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-15 Score=135.45 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=73.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+|+++|+.+|+.|| ++.|.|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 468999999999999999999999999 5599999997 99999999999999999999995 89999999999998877
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=132.23 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G-----r~L~ 201 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|.+|.+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 999985
No 113
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=131.38 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=74.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.|+ .+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3578999999999999999999999774 6788888889999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 90 ~~~ 92 (102)
T 2fc8_A 90 KPK 92 (102)
T ss_dssp CCC
T ss_pred cCC
Confidence 853
No 114
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.6e-15 Score=128.07 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=72.1
Q ss_pred EEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 130 tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||. ++|..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999899999999999999999999999 6999999999999875
No 115
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=133.64 Aligned_cols=79 Identities=20% Similarity=0.149 Sum_probs=74.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+|+++|+.+|+.| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36899999999999999999999999 89999999996 5999999999999999999999 599999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.4e-14 Score=133.55 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=71.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999999999997 68999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9754
No 117
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.2e-14 Score=131.50 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..+.++ .++|||||+|.+.++|..||..|||..|+|+.|.|.||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 457999999999999999999999999999999999987
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=1.8e-14 Score=130.03 Aligned_cols=74 Identities=14% Similarity=0.368 Sum_probs=69.7
Q ss_pred CCCcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+.++|||+|||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3578999999998 99999999999999999999983 68999999999999999999999999999999999
Q ss_pred cch
Q 003161 205 ATR 207 (843)
Q Consensus 205 A~~ 207 (843)
+..
T Consensus 92 a~~ 94 (97)
T 2xnq_A 92 SSS 94 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 119
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=124.96 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=70.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~L-nG~~i~Gr~L~V~~ 204 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45789999999999999999999999999999999864 699999999999999999998 99999999999999
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
|.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=8e-15 Score=134.22 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=69.6
Q ss_pred CCcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEe
Q 003161 127 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF--NIDGQELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~--~i~Gr~L~V~ 203 (843)
+.++|||+|||+ .+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|||. .|.|++|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 578999999999 9999999999999999999999875 489999999999999999999864 5999999999
Q ss_pred ccch
Q 003161 204 QATR 207 (843)
Q Consensus 204 ~A~~ 207 (843)
+|..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9984
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.53 E-value=4.7e-14 Score=141.52 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 854
No 122
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.53 E-value=1.8e-14 Score=147.76 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||||||+.+|+++|+.+|+.||.|.+|+|++++.+|+++|||||+|.+.++|..||..|||..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 123
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.5e-14 Score=126.66 Aligned_cols=75 Identities=20% Similarity=0.411 Sum_probs=70.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 357899999999999999999999999999999996 579999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 743
No 124
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=2.1e-14 Score=133.43 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..++|||+|||+.+++++|+.+|+.|| .|..+.|+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 478999999999999999999999999 899998853 358899999999999999999999999999999999998
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 125
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=128.75 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.+|.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 66654 4788999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=127.78 Aligned_cols=76 Identities=20% Similarity=0.402 Sum_probs=71.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~--Gr~L~V~~ 204 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|.+||..|||..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4689999999999999999999999999999998654 689999999999999999999999999 99999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9754
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=136.66 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=70.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln--G~~i~Gr~L~V~~ 204 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|.+||..|| +..|.|++|.|.+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4789999999999999999999999999999999875 6999999999999999999998 4689999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9855
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=9.1e-15 Score=130.81 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457999999999999999999999999988766 24899999999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8743
No 129
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.52 E-value=6.5e-15 Score=133.40 Aligned_cols=79 Identities=28% Similarity=0.437 Sum_probs=75.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||. ||..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999997 99999999999999999999999 9999999999999988
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=131.33 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=72.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35789999999999999999999999999999999876 799999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.1e-14 Score=136.45 Aligned_cols=81 Identities=19% Similarity=0.352 Sum_probs=78.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003161 207 R 207 (843)
Q Consensus 207 ~ 207 (843)
+
T Consensus 166 ~ 166 (166)
T 3md3_A 166 K 166 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-15 Score=141.96 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=78.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeE--------EEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~--------vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999999 8999998899999999999999999999999999999999
Q ss_pred eEEEEeccchh
Q 003161 198 QELMVDQATRE 208 (843)
Q Consensus 198 r~L~V~~A~~k 208 (843)
+.|.|.+|..+
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998854
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=7.6e-15 Score=141.32 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEE--Eee---cCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQ---YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vk--iv~---d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
.+.++|||+|||+.+|+++|+.+|+.||.|..+. ++. ...+|.++|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3478999999999999999999999999998751 111 12479999999999999999999999999999999999
Q ss_pred EEeccch
Q 003161 201 MVDQATR 207 (843)
Q Consensus 201 ~V~~A~~ 207 (843)
.|.+|..
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999974
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.7e-14 Score=132.86 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 003161 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln--G~~i~Gr~L~ 201 (843)
..+.++|||+|||+. +++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|| +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345889999999998 99999999999999999999964 47999999999999999999886 4569999999
Q ss_pred Eeccchh
Q 003161 202 VDQATRE 208 (843)
Q Consensus 202 V~~A~~k 208 (843)
|.+|..+
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9999743
No 135
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=135.84 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=78.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCce----eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I----~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
...++|||+|||+.+|+++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 347899999999999999999999999875 68999999 4999999999999999999999995 99999999999
Q ss_pred EeccchhhHHHHH
Q 003161 202 VDQATREYLERYV 214 (843)
Q Consensus 202 V~~A~~k~le~~~ 214 (843)
|..+..+.+....
T Consensus 99 V~~a~~~e~~~~~ 111 (123)
T 2dha_A 99 LFRSTAAEVQQVL 111 (123)
T ss_dssp CEEECHHHHHHHH
T ss_pred EEECCHHHHHHHH
Confidence 9999877655443
No 136
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=124.54 Aligned_cols=75 Identities=27% Similarity=0.429 Sum_probs=70.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..+.+++ +||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4579999999999999999999999999999999974 39999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 744
No 137
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=129.96 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=69.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF--NIDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~--~i~Gr~L~V~ 203 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.|+.+ +|||||+|.+.++|..||..|||. .|.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34789999999999999999999999999999998763 699999999999999999988764 5999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
++..+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99844
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=127.39 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 35789999999999999999999999999999999754 699999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 743
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=133.10 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 57899999999999999999999999999999999998
Q ss_pred hhh
Q 003161 207 REY 209 (843)
Q Consensus 207 ~k~ 209 (843)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 140
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=129.96 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=71.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999999999999999999999854
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=6.7e-14 Score=127.17 Aligned_cols=74 Identities=18% Similarity=0.396 Sum_probs=69.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.++ +|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 47899999999999999999999999999999986 3599999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=126.18 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=71.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEE-EEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~v-kiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..++|||+|||+.+++++|+.+|+.||.|..+ .|+.++.+| +|||+|.+.++|..||..|||..|+|+.|.|.+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999 588776554 3999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=2.8e-14 Score=135.55 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCcee--EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~--~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
..++|||+|||+.+|+++|+.+|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 46799999999999999999999999 577 999999975 9999999999999999999999 688999999999999
Q ss_pred cchhh
Q 003161 205 ATREY 209 (843)
Q Consensus 205 A~~k~ 209 (843)
+..+.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 88654
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=5.2e-14 Score=136.58 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=72.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|..||..|||..|+|++|.|.+|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 4789999999999999999999999999999999876 58999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=1.3e-13 Score=126.80 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=69.2
Q ss_pred CCCcEEEEccCCCC-CcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~-vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...++|||+|||+. +++++|+.+|+.||.|..|.| ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999998 478999999999999999999999999999999999
Q ss_pred cc
Q 003161 205 AT 206 (843)
Q Consensus 205 A~ 206 (843)
+.
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.49 E-value=7.2e-14 Score=135.57 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=77.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999874
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=123.32 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=70.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+++ |||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3578999999999999999999999999999999974 49999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 148
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=8.1e-14 Score=136.47 Aligned_cols=79 Identities=24% Similarity=0.491 Sum_probs=76.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 7899999999999999999999999999999999998899999999999999999999999999999999999999984
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=123.53 Aligned_cols=75 Identities=20% Similarity=0.366 Sum_probs=69.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcC--CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~--G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
.+.++|||+|||+.+++++|+.+|+.| |.|..+.++ +|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999 999998874 5799999999999999999999999999999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
+|.++
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 99854
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=6.6e-14 Score=136.36 Aligned_cols=82 Identities=18% Similarity=0.341 Sum_probs=78.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 151
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.5e-14 Score=125.08 Aligned_cols=75 Identities=17% Similarity=0.363 Sum_probs=68.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCc-eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~-I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG-~~i~Gr~L~V~~ 204 (843)
+.++|||+|||+.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4789999999999999999999999999 5665552 478999999999999999999999 999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|.++
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9743
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=123.66 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 56656666 99999999999999999 99999999999999886
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.7e-14 Score=126.11 Aligned_cols=75 Identities=15% Similarity=0.401 Sum_probs=69.8
Q ss_pred CCCcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
.+.++|||+|||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3588999999999 99999999999999999999983 68999999999999999999999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8744
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.4e-13 Score=137.75 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=77.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++|..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 457899999999999999999999999999999999999999999999999999999999998 5999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 90 ~~~ 92 (196)
T 1l3k_A 90 VSR 92 (196)
T ss_dssp CC-
T ss_pred cCc
Confidence 754
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.4e-13 Score=121.09 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=68.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|| .+++++|+.+|+.||.|..|.|. .++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4789999996 89999999999999999999983 568999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 156
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.45 E-value=2.4e-14 Score=138.21 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=73.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+|+++|+.+|+.|| |..|.|+.++ +|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3478999999999999999999999999 7799999997 4999999999999999999999 69999999999999888
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 743
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.45 E-value=1.3e-13 Score=121.77 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=70.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.| .|..+.+. .++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 678999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=7.3e-14 Score=136.12 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=77.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 6799999999999999999999999999999999998899999999999999999999998 999999999999999986
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.45 E-value=1.5e-13 Score=139.60 Aligned_cols=82 Identities=32% Similarity=0.522 Sum_probs=78.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 204 ~~ 205 (216)
T 2qfj_A 204 TP 205 (216)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=2.7e-13 Score=135.82 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=79.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.++
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=1.7e-13 Score=140.49 Aligned_cols=79 Identities=19% Similarity=0.398 Sum_probs=74.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ .+.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 579999999999999999999999999999999998 456899999999999999999999999999999999999986
Q ss_pred h
Q 003161 208 E 208 (843)
Q Consensus 208 k 208 (843)
+
T Consensus 181 ~ 181 (213)
T 4f02_A 181 R 181 (213)
T ss_dssp H
T ss_pred C
Confidence 5
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=2.3e-13 Score=120.90 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i--~Gr~L~V~ 203 (843)
.+.++|||||||+.+|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|. .|+|..+ .|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 34789999999999999999999999999999999874 7899999999999987 3666664 59999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
+|.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 99865
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=122.12 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=63.7
Q ss_pred CcE-EEEccCCCCCcHHH----HHHHHhcC-CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 128 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 128 ~~t-LfVgNLp~~vte~~----L~~lFs~~-G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
..| |||+|||+.++.+. |+.+|+.| |.|.+| +| |||||.|.+.++|.+|+..|||..|.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999887 66899999 599988 44 9999999999999999999999999999999
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|++|..
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999983
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=126.85 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCC---CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~t---Gk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
..++|||+|||+.+++++|+.+|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+||..|+ .++|+.|.|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 478999999999999999999999999999 888888777 8999999999999999999999995 3778888776
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.43 E-value=1.4e-13 Score=128.12 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=66.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~-----L~ 201 (843)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999775 89999999999999999999999999998 66
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|..+..
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 665553
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=3e-13 Score=135.22 Aligned_cols=81 Identities=17% Similarity=0.362 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.+|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 368999999999999999999999999999999999988999999999999999999999985 8999999999999998
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 65
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.8e-13 Score=126.29 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=68.0
Q ss_pred CCcEEEE--ccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee-----CCeE
Q 003161 127 PQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQE 199 (843)
Q Consensus 127 ~~~tLfV--gNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i-----~Gr~ 199 (843)
+.++||| |||++.+++++|+.+|+.||.|..|.|+. .+|||||+|.+.++|.+|+..|||..| .|++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4689999 77999999999999999999999998754 268999999999999999999999998 6899
Q ss_pred EEEeccc
Q 003161 200 LMVDQAT 206 (843)
Q Consensus 200 L~V~~A~ 206 (843)
|.|+++.
T Consensus 98 l~v~~a~ 104 (114)
T 2cq2_A 98 LYLNFVE 104 (114)
T ss_dssp CEEEEES
T ss_pred EEEEecc
Confidence 9999986
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.4e-13 Score=130.68 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=73.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
++|||+|||+.+|+++|+.+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999996 688999999999999999999999999999999999999864
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.41 E-value=6.1e-13 Score=129.48 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=75.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V~~ 204 (843)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|.| ++|.|.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999999988 9999998
Q ss_pred c
Q 003161 205 A 205 (843)
Q Consensus 205 A 205 (843)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.40 E-value=4.2e-13 Score=136.23 Aligned_cols=82 Identities=26% Similarity=0.364 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=5.2e-13 Score=116.85 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=66.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcC----C-------ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~----G-------~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i 195 (843)
+.++|||+|||+.+++++|+.+|+.| | .|.++.++.+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 47899999999999999999999999 8 8999988654 799999999999999999 8999999
Q ss_pred CCeEEEEec
Q 003161 196 DGQELMVDQ 204 (843)
Q Consensus 196 ~Gr~L~V~~ 204 (843)
+|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.39 E-value=4.9e-13 Score=132.18 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=70.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEecc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMVDQA 205 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V~~A 205 (843)
..+|||+||++.+|+++|+.+|+.||.|..|.|+.. .++|||||+|.+.++|..|+..|||..|.| +.|+|+||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 578999999999999999999999999999998654 357999999999999999999999999965 99999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 855
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=6.9e-13 Score=128.60 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=74.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEec
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMVDQ 204 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~--L~V~~ 204 (843)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3679999999999999999999999999999999999889999999999999999999999999999999964 88888
Q ss_pred c
Q 003161 205 A 205 (843)
Q Consensus 205 A 205 (843)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=7.5e-13 Score=126.16 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGf-gFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V~ 203 (843)
....|||+||++.+|+++|+.+|+.||.|..|.++.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3568899999999999999999999999999988764 2688 9999999999999999999999988 999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
||..+
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99855
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=8e-13 Score=135.47 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCcEEEEccCC-CCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp-~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+.++|||+||| +.+++++|+.+|+.||.|.+|+|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 89999999999999999999999875 3799999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 743
No 176
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.38 E-value=1.8e-12 Score=119.16 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=72.8
Q ss_pred CCcEEEEccCCC-----CCcHHHHHHHHhcCCceeEEEEeecCCC-CCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 127 PQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 127 ~~~tLfVgNLp~-----~vte~~L~~lFs~~G~I~~vkiv~d~~t-Gk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
+.++|+|.||.. .-++++|+.+|++||.|.+|.|+.++.+ |.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 478999999973 2367899999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEeccch
Q 003161 201 MVDQATR 207 (843)
Q Consensus 201 ~V~~A~~ 207 (843)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999975
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.38 E-value=5.7e-13 Score=129.76 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=75.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
+.++|||+|||+.+|+++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999999 4678999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=8.1e-13 Score=129.29 Aligned_cols=78 Identities=15% Similarity=0.340 Sum_probs=73.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEe
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMVD 203 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~---Gr~L~V~ 203 (843)
..++|||+|||+.+|+++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46799999999999999999999999999999999995 7999999999999999999999999998876 4999999
Q ss_pred cc
Q 003161 204 QA 205 (843)
Q Consensus 204 ~A 205 (843)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=9.1e-13 Score=123.96 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
.+.++|||+|| .+++++|+.+|+.||.|..|.|+ .++|||||+|.+.++|.+||..|||..|+|+.|.|.+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34789999996 69999999999999999999985 56899999999999999999999999999999999999
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 854
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.36 E-value=1.1e-12 Score=128.39 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=74.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tG--k~kGfgFVeF~s~e~A~~Al~~LnG~~i~---Gr~L~ 201 (843)
..++|||+|||+.+|+++|+.+|+.||.|.++.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998777 89999999999999999999999998876 67888
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 887763
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.6e-12 Score=123.03 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=67.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEec
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMVDQ 204 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGf-gFVeF~s~e~A~~Al~~LnG~~i~G--r~L~V~~ 204 (843)
...|||+||++.+++++|+.+|+.||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 286 9999999999999999999999987 6999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
|..+
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9865
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.35 E-value=1.7e-12 Score=138.08 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=74.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHH----HHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003161 125 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~----~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L 200 (843)
..+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|+++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3458999999999999999966 8999999999999875 78999999999999999999999999999999999
Q ss_pred EEeccchh
Q 003161 201 MVDQATRE 208 (843)
Q Consensus 201 ~V~~A~~k 208 (843)
.|.++..+
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998643
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=1.6e-12 Score=128.00 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.+|.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 47899999999999999999999999988766 3589999999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7e-13 Score=116.78 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=64.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|.+|+. .+..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4789999999999999999999999999999999764 78999999999999975422 1344589999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 185
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.9e-12 Score=131.58 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=71.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.++|||+|||+.+++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 6899999999999999999999999999999999985 6999999999999999999999855 459999999999865
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.33 E-value=1.7e-12 Score=138.62 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHhcCCceeEEEEeecCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003161 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMV 202 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~-vte~~L~~lFs~~G~I~~vkiv~d~~-tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V 202 (843)
....++|||+|||+. +++++|+.+|+.||.|..|.|+.+.. ||.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999875 5999999999999999999999 99999999999999
Q ss_pred eccchh
Q 003161 203 DQATRE 208 (843)
Q Consensus 203 ~~A~~k 208 (843)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=5e-12 Score=134.50 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=78.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
.+
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=3e-12 Score=132.70 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=72.5
Q ss_pred CCcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
+.++|||+|||+ .+++++|+.+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 478999999999 99999999999999999999998874 789999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
...
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 743
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.30 E-value=4.9e-12 Score=134.55 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=78.7
Q ss_pred CCCcEEEEccCCCCC-cHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 126 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 126 ~~~~tLfVgNLp~~v-te~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
...++|||+|||+.+ ++++|+.+|+.||.|..+.|+.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999986 899999999999999999999999999999999999999
Q ss_pred cchhhH
Q 003161 205 ATREYL 210 (843)
Q Consensus 205 A~~k~l 210 (843)
+.++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 986643
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=3.2e-12 Score=133.92 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.2
Q ss_pred CCCCcEEEEccCCCCC---------cHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003161 125 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~v---------te~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i 195 (843)
....++||||||+..+ ++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3458999999999998 79999999999999999999864 79999999999999999999999999
Q ss_pred ------------CCeEEEEeccchh
Q 003161 196 ------------DGQELMVDQATRE 208 (843)
Q Consensus 196 ------------~Gr~L~V~~A~~k 208 (843)
.|+.|.|.||..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999854
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.29 E-value=1.2e-12 Score=128.79 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEec
Q 003161 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQ 204 (843)
Q Consensus 125 ~~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~ 204 (843)
....++|||+|||+.+++++|+.+|..||.+.. .++.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 345899999999999999999999999998877 345555689999999999999999999995 999999999999999
Q ss_pred cchh
Q 003161 205 ATRE 208 (843)
Q Consensus 205 A~~k 208 (843)
+..+
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8753
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.25 E-value=7.7e-12 Score=128.13 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCce--eEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 199 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I--~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr----~ 199 (843)
.+.++|||+|||+.+|+++|+.+|+.||.| .+++++.+. |..+|||||+|.+.++|..||..|||+.|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 347899999999999999999999999999 899998873 66779999999999999999999999999876 6
Q ss_pred EEEecc
Q 003161 200 LMVDQA 205 (843)
Q Consensus 200 L~V~~A 205 (843)
+.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2e-11 Score=112.76 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=68.0
Q ss_pred CCcEEEEccCCCCCc-----------HHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003161 127 PQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 127 ~~~tLfVgNLp~~vt-----------e~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i 195 (843)
+.++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+||..|||..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 478999999955433 5799999999999999955 543 3899999999999999999999999999
Q ss_pred CCeEEEEeccchh
Q 003161 196 DGQELMVDQATRE 208 (843)
Q Consensus 196 ~Gr~L~V~~A~~k 208 (843)
+|+.|.|.++..+
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998743
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.24 E-value=6.5e-12 Score=126.35 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=71.7
Q ss_pred CcEEEEccCCC-CCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccc
Q 003161 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQAT 206 (843)
Q Consensus 128 ~~tLfVgNLp~-~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~ 206 (843)
.++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998874 7899999999999999999999999999999999987
Q ss_pred hh
Q 003161 207 RE 208 (843)
Q Consensus 207 ~k 208 (843)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.23 E-value=3.2e-11 Score=110.69 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCcEEEEccCC--CCCc--------HHHHHHHHhcCCceeEEEEeecCCC--CCCcceEEEEeCCHHHHHHHHHHhCCce
Q 003161 127 PQTKVYVGKIA--PTAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFN 194 (843)
Q Consensus 127 ~~~tLfVgNLp--~~vt--------e~~L~~lFs~~G~I~~vkiv~d~~t--Gk~kGfgFVeF~s~e~A~~Al~~LnG~~ 194 (843)
+.+.|.|.|+- ..+. .++|+..|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 46789999983 3333 2689999999999999999988654 4689999999999999999999999999
Q ss_pred eCCeEEEEeccchh
Q 003161 195 IDGQELMVDQATRE 208 (843)
Q Consensus 195 i~Gr~L~V~~A~~k 208 (843)
|+||.|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998744
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=2.6e-11 Score=128.16 Aligned_cols=76 Identities=18% Similarity=0.248 Sum_probs=70.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
...++|||+|||+.+|+++|+.+|+.||.|..|.+.. ++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3478999999999999999999999999999999854 3699999999999999999999999999999999988
Q ss_pred ch
Q 003161 206 TR 207 (843)
Q Consensus 206 ~~ 207 (843)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.21 E-value=2.4e-11 Score=122.12 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~ 203 (843)
.+.++|||+|||..+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3578999999999999999999999999 9999999764 2789999999999999999999999999 9999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
|+.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.21 E-value=3.5e-12 Score=127.61 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=65.2
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEE-----EeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK-----RAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vk-----iv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
..++|||+|||+.+++++|+.+|+.||.|..+. .+.+..++.++|||||+|.+.++|.+|| .|||..|+|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 368999999999999999999999995333321 1111123667899999999999999999 7999999999999
Q ss_pred Eeccch
Q 003161 202 VDQATR 207 (843)
Q Consensus 202 V~~A~~ 207 (843)
|.++..
T Consensus 82 v~~~~~ 87 (198)
T 2yh0_A 82 IRRPHD 87 (198)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998874
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=7.9e-12 Score=114.52 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=65.6
Q ss_pred EEccCCCCCcHHHHHHHH------------hcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003161 132 YVGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (843)
Q Consensus 132 fVgNLp~~vte~~L~~lF------------s~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~ 199 (843)
++.||++.+++.+|+.+| ++||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 367888888888887776 999999999999985 5899999999999999999999999999999999
Q ss_pred EEEecc
Q 003161 200 LMVDQA 205 (843)
Q Consensus 200 L~V~~A 205 (843)
|.|.++
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999886
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.20 E-value=2.8e-11 Score=127.90 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC-CceeC---CeEEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-KFNID---GQELMV 202 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln-G~~i~---Gr~L~V 202 (843)
+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|| |..+. |++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3679999999999999999999999999999999999 599999999999999999999999995 55554 999999
Q ss_pred eccch
Q 003161 203 DQATR 207 (843)
Q Consensus 203 ~~A~~ 207 (843)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99873
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=2.6e-11 Score=129.47 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A 205 (843)
..++|||+|||+.+++.+|+.+|+.|| .|..|.++.+. .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999986 4899999999999999999999999999999999999998
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 854
No 202
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.17 E-value=4.5e-11 Score=123.81 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHhcCC-ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 003161 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMVD 203 (843)
Q Consensus 126 ~~~~tLfVgNLp~~vte~~L~~lFs~~G-~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~-Gr~L~V~ 203 (843)
.+.++|||+|||+.+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999999653 3689999999999999999999999999 9999999
Q ss_pred ccchh
Q 003161 204 QATRE 208 (843)
Q Consensus 204 ~A~~k 208 (843)
||.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.16 E-value=8.2e-11 Score=110.33 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=71.2
Q ss_pred CCcEEEEccCCCC--C---cHHHHHHHHhcCCceeEEEEeecCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 127 PQTKVYVGKIAPT--A---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 127 ~~~tLfVgNLp~~--v---te~~L~~lFs~~G~I~~vkiv~d~~----tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
+.++|+|.|+-.. + -+++|+..|++||.|.+|.|+.++. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4789999998432 2 2579999999999999999999864 46788999999999999999999999999999
Q ss_pred eEEEEeccch
Q 003161 198 QELMVDQATR 207 (843)
Q Consensus 198 r~L~V~~A~~ 207 (843)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999874
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=5.6e-11 Score=116.14 Aligned_cols=73 Identities=22% Similarity=0.406 Sum_probs=65.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcC----C-------ceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~----G-------~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i 195 (843)
+.++|||+|||+.+|+++|+.+|+.| | .|..+.+ +.++|||||+|.+.++|.+|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 5 5566655 455899999999999999999 7999999
Q ss_pred CCeEEEEeccc
Q 003161 196 DGQELMVDQAT 206 (843)
Q Consensus 196 ~Gr~L~V~~A~ 206 (843)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999999876
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.04 E-value=3.6e-10 Score=124.39 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=66.0
Q ss_pred CCCCcEEEEcc--CCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 003161 125 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 198 (843)
Q Consensus 125 ~~~~~tLfVgN--Lp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~---Gr- 198 (843)
..+..+||||| |++.+|+++|+.+|+.||.|.+|.+.. ++|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34578999999 688999999999999999999987743 4799999999999999999999999983 45
Q ss_pred -EEEEeccc
Q 003161 199 -ELMVDQAT 206 (843)
Q Consensus 199 -~L~V~~A~ 206 (843)
.|.|+++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888874
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-09 Score=99.07 Aligned_cols=64 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccchh
Q 003161 138 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATRE 208 (843)
Q Consensus 138 ~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~k 208 (843)
..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..||..++| +.|++|.|.|+..+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 468999999999999999999997 57899999999999999999997655 67999999998744
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=3.6e-09 Score=98.55 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=65.5
Q ss_pred CcEEEEccCCCCCc----------HHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC
Q 003161 128 QTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (843)
Q Consensus 128 ~~tLfVgNLp~~vt----------e~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G 197 (843)
.+.|.+.|+-..-. .++|+..|++||.|.+|.|..+ + ++|||||+|.+.++|.+|+..|||..|+|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~--~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN--S--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT--C--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC--C--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56888888743221 2478999999999999999665 2 58999999999999999999999999999
Q ss_pred eEEEEeccchh
Q 003161 198 QELMVDQATRE 208 (843)
Q Consensus 198 r~L~V~~A~~k 208 (843)
+.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998743
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=5e-09 Score=93.07 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=64.6
Q ss_pred CCcEEEEccCCC----CCcH----HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003161 127 PQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (843)
Q Consensus 127 ~~~tLfVgNLp~----~vte----~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr 198 (843)
+..||+|.-++. ..-+ .+|...|+.||.|..++|+.+ .+||+|.+.++|.+||. |||+.|+|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 467899988762 3333 578999999999999999887 39999999999999999 999999999
Q ss_pred EEEEeccchhhH
Q 003161 199 ELMVDQATREYL 210 (843)
Q Consensus 199 ~L~V~~A~~k~l 210 (843)
.|+|+.+++..+
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999987643
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.2e-08 Score=92.92 Aligned_cols=83 Identities=12% Similarity=0.047 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCCC-CcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 003161 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQELM 201 (843)
Q Consensus 126 ~~~~tLfVgNLp~~-vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s-~e~A~~Al~~Ln--G~~i~Gr~L~ 201 (843)
.+++.|||+||++. ++.++|+.+|+.||.|..|.++.+.. +|||.|.+ ..+|..|+..|| |..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45899999999999 99999999999999999999988753 59999999 899999999995 8889999999
Q ss_pred EeccchhhHHHHH
Q 003161 202 VDQATREYLERYV 214 (843)
Q Consensus 202 V~~A~~k~le~~~ 214 (843)
|....-..-..|-
T Consensus 90 ~evL~GeeE~~yw 102 (121)
T 1owx_A 90 WEVLEGEVEKEAL 102 (121)
T ss_dssp EEECCHHHHHHHH
T ss_pred EEECCCHHHHHHH
Confidence 8777644444443
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1e-07 Score=85.19 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=62.2
Q ss_pred CCCcEEEEccCCCC-----CcH----HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 126 KPQTKVYVGKIAPT-----ADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 126 ~~~~tLfVgNLp~~-----vte----~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
++..||+|.-++.. +-+ .+|.+.|..||.|..++|+.+. +||+|.+.++|.+||. |||+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34779999988743 222 4688999999999999999883 9999999999999999 9999999
Q ss_pred CeEEEEeccc
Q 003161 197 GQELMVDQAT 206 (843)
Q Consensus 197 Gr~L~V~~A~ 206 (843)
|+.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.44 E-value=2.4e-07 Score=95.20 Aligned_cols=68 Identities=18% Similarity=0.070 Sum_probs=61.0
Q ss_pred CcHHHHHHHHhcCCceeEEEEeecC----CCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeccch
Q 003161 140 ADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVDQATR 207 (843)
Q Consensus 140 vte~~L~~lFs~~G~I~~vkiv~d~----~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~~A~~ 207 (843)
-.+.+|...|++||.|.++.|+.+. .+|.++||+||+|.+.++|.+|+..|||..++||.|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3457899999999999999998553 4458999999999999999999999999999999999999873
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=6.8e-05 Score=68.44 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcC-----CceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~-----G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
..++|-+-|||.++++..|+.|+..+ |.|..+.++.|- |-|+|+|.+...|.+|.-.|||..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999998873 5699999999999999988999999999999
Q ss_pred Eec
Q 003161 202 VDQ 204 (843)
Q Consensus 202 V~~ 204 (843)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 964
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.0018 Score=58.80 Aligned_cols=74 Identities=11% Similarity=-0.002 Sum_probs=63.6
Q ss_pred CCcEEEEccCCCCC-cH----HHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 127 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~v-te----~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
.+++|+|.||+..| .. ..++.+|..|+.+..+..... -.-..|.|.++++|.+|-..|||..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36799999998866 32 467899999999999887654 22468999999999999999999999999999
Q ss_pred Eeccc
Q 003161 202 VDQAT 206 (843)
Q Consensus 202 V~~A~ 206 (843)
|-+++
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99988
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.35 E-value=0.055 Score=48.02 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=58.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCC--CcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk--~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
++|.|.+||+++|++++...++.++.+..+..+....+.+ .-+-|||.|.+.+++..-...++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999999888777777654433 2367899999999999999999999984
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.28 E-value=0.026 Score=53.26 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=61.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCC-------------CC-CCcceEEEEeCCHHHHHHHHHHhCCc
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------------NG-TPKGFGFCEFESAEGVLRALRLLNKF 193 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~-------------tG-k~kGfgFVeF~s~e~A~~Al~~LnG~ 193 (843)
..-|.|-+.|...+ ..+...|++||.|..-.-+.... .+ ...++-.|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45667777775554 56677899999987722111100 00 124578999999999999999 9999
Q ss_pred eeCCeEEEEeccchhhHHHHHHHh
Q 003161 194 NIDGQELMVDQATREYLERYVDKK 217 (843)
Q Consensus 194 ~i~Gr~L~V~~A~~k~le~~~~kk 217 (843)
.|+|..|-|....+..++.....+
T Consensus 85 ii~G~mIGV~Py~~~~ve~l~~~~ 108 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDAVERLQKRK 108 (132)
T ss_dssp EETTEECEEEECCHHHHHHHC---
T ss_pred EeCcEEEEEEECCHHHHHHHhcCC
Confidence 999999999999988776665443
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.10 E-value=0.093 Score=46.99 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=46.0
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln 191 (843)
.+.++| +.|..+...+|..+|+.|| -..|+.+-| .-|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 455666 9999999999999999999 445666666 279999999999999999763
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.02 E-value=0.077 Score=48.01 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=58.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhc-----CCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKV-----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~-----~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~ 201 (843)
-.++|.|.|||+.+.++.|.-+|.. -|.|..|.... +-|+|+|.+...|.+.|. -..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 3689999999999999999999986 25777777633 468999999999999988 337788889999
Q ss_pred Eeccc
Q 003161 202 VDQAT 206 (843)
Q Consensus 202 V~~A~ 206 (843)
|....
T Consensus 78 V~P~~ 82 (104)
T 2dhx_A 78 LRPAP 82 (104)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 86544
No 218
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.89 E-value=0.11 Score=48.40 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=60.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEecc
Q 003161 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMVDQA 205 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~G-r~L~V~~A 205 (843)
..+-|.|-+.|+.. ...+...|..||.|...... ++ ..+-.|.|.+..+|.+||. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36788888998875 56777889999999988761 22 3599999999999999999 89999984 77888776
Q ss_pred chh
Q 003161 206 TRE 208 (843)
Q Consensus 206 ~~k 208 (843)
..+
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 533
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.53 E-value=0.052 Score=51.89 Aligned_cols=45 Identities=20% Similarity=0.039 Sum_probs=34.4
Q ss_pred EEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 157 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 157 ~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
.++|+.+ ...++|||||+|.+..+|.+|+..+++....+..+.++
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~ 46 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYD 46 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccCCCCCccccc
Confidence 5677777 34799999999999999999999888755443344443
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.92 E-value=0.11 Score=46.69 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=45.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003161 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (843)
Q Consensus 129 ~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln 191 (843)
..++| +.|..+...+|..+|+.|| -..|..+-| .-|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 455677776 279999999999999999764
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.85 E-value=0.059 Score=51.25 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=38.3
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeccchh
Q 003161 166 NGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMVDQATRE 208 (843)
Q Consensus 166 tGk~kGfgFVeF~s~e~A~~Al~~L-nG~~i~Gr~L~V~~A~~k 208 (843)
....+|+++|+|.+.+.|.+|+..| ||..|+| .|.|+++..+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4578999999999999999999999 9999999 9999988743
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=91.57 E-value=0.019 Score=65.10 Aligned_cols=6 Identities=0% Similarity=0.301 Sum_probs=2.3
Q ss_pred EEeccc
Q 003161 201 MVDQAT 206 (843)
Q Consensus 201 ~V~~A~ 206 (843)
.|.|..
T Consensus 148 FV~F~~ 153 (437)
T 3pgw_S 148 FIEYEH 153 (437)
T ss_pred EEeecc
Confidence 334433
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.89 E-value=0.47 Score=42.47 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=52.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCC--CcceEEEEeCCHHHHHHHHHHhCCceeC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID 196 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk--~kGfgFVeF~s~e~A~~Al~~LnG~~i~ 196 (843)
+-+|.|..||+++|++++.+.++.+-.+.....+....+-+ .-+-|||.|.+.+++..-...++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 56899999999999999988888765543333333322222 2256899999999999999999999974
No 224
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.21 E-value=0.28 Score=55.75 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=42.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHH
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~ 188 (843)
.++|||. .+..++..+|..+|++||.|.++.+..+ .| .|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 5899997 7999999999999999999999988664 23 699999999999987765
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.33 E-value=12 Score=42.89 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHhcCCceeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 003161 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (843)
Q Consensus 128 ~~tLfVgNLp~~vte~~L~~lFs~~G~I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~Ln 191 (843)
...++|+ +|..+...+|..+|+.||. ..|..+.+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 8888899999999999994 56666655 379999999999999999885
No 226
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=63.87 E-value=2.4 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHH
Q 003161 799 KASQMLELLQTILDDEAEMFVLKM 822 (843)
Q Consensus 799 ~p~~l~~~l~~~ld~~a~~fv~~l 822 (843)
+-..||+++..||+.+|+.||..+
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345899999999999999999754
No 227
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=49.52 E-value=49 Score=29.27 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=46.9
Q ss_pred HhhhhhhhHHHHHHhhcCcch--hHHHHHHHHhhhccCChHHHHHHHHHhhhHH----HHHHHHHHH
Q 003161 763 LHERMRPWISKKITEFLGEEE--TTLVDYIVSSTQDHVKASQMLELLQTILDDE----AEMFVLKMW 823 (843)
Q Consensus 763 ~~~~~~pwi~kki~e~lG~ee--~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~----a~~fv~~lw 823 (843)
+-+.||--|.+|...+=-+-| ..+-+||+=++....++..++.+|...+|.= -..||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 445678889999988845544 4488999999999999999999999999943 235555443
No 228
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=42.69 E-value=11 Score=26.60 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHHHhhcCcchhHHHHHHHHhhh
Q 003161 771 ISKKITEFLGEEETTLVDYIVSSTQ 795 (843)
Q Consensus 771 i~kki~e~lG~ee~~lv~~i~~~l~ 795 (843)
+..||+++||+.+=.=+|+|++.|.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4679999999998888999998875
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.98 E-value=50 Score=27.15 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=41.8
Q ss_pred EEEEc-cCCCCCcHHHHHHHHhcCCc-----eeEEEEeecCCCCCCcceEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 003161 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMVD 203 (843)
Q Consensus 130 tLfVg-NLp~~vte~~L~~lFs~~G~-----I~~vkiv~d~~tGk~kGfgFVeF~s~e~A~~Al~~LnG~~i~Gr~L~V~ 203 (843)
+|||. +--..++..+|..++..-+. |-.+.+.. .|.||+-.. ..+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45663 22335666778877775553 34455533 389999875 45778889999999999999987
Q ss_pred ccc
Q 003161 204 QAT 206 (843)
Q Consensus 204 ~A~ 206 (843)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 664
No 230
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=32.01 E-value=6.2 Score=32.51 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHH
Q 003161 799 KASQMLELLQTILDDEAEMFVLKM 822 (843)
Q Consensus 799 ~p~~l~~~l~~~ld~~a~~fv~~l 822 (843)
+-..||++|..||+.+|+.||..+
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999999754
No 231
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=22.97 E-value=18 Score=32.29 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred CCcEEEEccCCCCCcHH
Q 003161 127 PQTKVYVGKIAPTADSD 143 (843)
Q Consensus 127 ~~~tLfVgNLp~~vte~ 143 (843)
..++|||+|||+.+|++
T Consensus 96 ~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -----------------
T ss_pred CCCceEeCCCCCCcccc
Confidence 35689999999999875
Done!