Query 003162
Match_columns 843
No_of_seqs 370 out of 1782
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 18:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04784 DUF547: Protein of un 100.0 2.8E-37 6.1E-42 289.8 11.0 112 690-821 1-117 (117)
2 TIGR02189 GlrX-like_plant Glut 99.8 9.3E-21 2E-25 173.1 10.9 85 424-508 7-94 (99)
3 PRK10824 glutaredoxin-4; Provi 99.8 1.3E-20 2.9E-25 177.4 11.1 87 424-510 14-105 (115)
4 cd04440 DEP_2_P-Rex DEP (Dishe 99.8 1.3E-20 2.8E-25 171.4 8.1 72 547-618 21-93 (93)
5 cd04448 DEP_PIKfyve DEP (Dishe 99.8 7.5E-21 1.6E-25 169.0 6.3 79 536-614 1-80 (81)
6 PHA03050 glutaredoxin; Provisi 99.8 3.4E-20 7.4E-25 172.5 10.9 86 424-509 12-103 (108)
7 TIGR00365 monothiol glutaredox 99.8 6.7E-20 1.4E-24 167.0 10.2 82 424-505 11-97 (97)
8 cd04442 DEP_1_DEP6 DEP (Dishev 99.8 4.5E-20 9.8E-25 164.5 5.9 72 544-615 9-82 (82)
9 cd04437 DEP_Epac DEP (Dishevel 99.8 1.8E-19 4E-24 171.9 10.2 80 545-624 12-93 (125)
10 PRK10638 glutaredoxin 3; Provi 99.8 3.7E-19 8E-24 156.1 10.2 81 426-506 3-83 (83)
11 cd04439 DEP_1_P-Rex DEP (Dishe 99.8 1.2E-19 2.5E-24 161.5 6.0 71 545-615 10-81 (81)
12 cd04441 DEP_2_DEP6 DEP (Dishev 99.8 1.9E-19 4.1E-24 161.5 6.9 69 547-615 16-85 (85)
13 cd04443 DEP_GPR155 DEP (Dishev 99.8 2.1E-19 4.5E-24 160.6 6.8 79 537-615 4-83 (83)
14 cd04438 DEP_dishevelled DEP (D 99.8 2.2E-19 4.9E-24 160.7 6.9 79 537-616 3-83 (84)
15 TIGR02181 GRX_bact Glutaredoxi 99.8 7.2E-19 1.6E-23 151.8 9.2 79 427-505 1-79 (79)
16 cd03028 GRX_PICOT_like Glutare 99.8 9.1E-19 2E-23 156.8 10.1 78 425-502 8-90 (90)
17 cd04449 DEP_DEPDC5-like DEP (D 99.8 2.6E-19 5.7E-24 159.5 6.3 80 535-615 2-83 (83)
18 cd04446 DEP_DEPDC4 DEP (Dishev 99.7 2.2E-18 4.8E-23 157.5 5.7 76 539-614 3-95 (95)
19 cd03031 GRX_GRX_like Glutaredo 99.7 1.2E-17 2.7E-22 163.4 11.3 83 426-508 1-93 (147)
20 KOG1752 Glutaredoxin and relat 99.7 1.1E-17 2.4E-22 155.3 10.5 90 421-510 10-102 (104)
21 cd03418 GRX_GRXb_1_3_like Glut 99.7 1.4E-17 3E-22 141.5 10.1 74 426-499 1-75 (75)
22 cd03027 GRX_DEP Glutaredoxin ( 99.7 1.2E-17 2.5E-22 142.9 9.3 73 425-497 1-73 (73)
23 COG0695 GrxC Glutaredoxin and 99.7 1.4E-17 3E-22 147.1 9.0 77 426-502 2-80 (80)
24 PTZ00062 glutaredoxin; Provisi 99.7 4.1E-17 8.9E-22 167.4 10.9 84 424-507 112-200 (204)
25 cd04447 DEP_BRCC3 DEP (Disheve 99.7 1.5E-17 3.3E-22 150.6 4.6 77 539-615 5-92 (92)
26 TIGR02180 GRX_euk Glutaredoxin 99.7 9.2E-17 2E-21 138.2 8.9 79 427-505 1-84 (84)
27 cd04444 DEP_PLEK2 DEP (Disheve 99.7 1.6E-17 3.5E-22 154.8 4.3 86 533-618 1-99 (109)
28 PF00610 DEP: Domain found in 99.7 7E-17 1.5E-21 139.1 6.6 69 547-615 1-74 (74)
29 cd03029 GRX_hybridPRX5 Glutare 99.7 2.4E-16 5.2E-21 134.3 9.3 70 426-496 2-71 (72)
30 cd03419 GRX_GRXh_1_2_like Glut 99.7 3.2E-16 6.9E-21 134.8 9.0 78 426-503 1-81 (82)
31 TIGR02190 GlrX-dom Glutaredoxi 99.7 5.6E-16 1.2E-20 135.2 10.0 73 423-496 6-78 (79)
32 COG0278 Glutaredoxin-related p 99.6 1.8E-16 3.9E-21 145.4 6.3 83 426-508 16-104 (105)
33 PRK11200 grxA glutaredoxin 1; 99.6 7.3E-16 1.6E-20 135.7 9.8 73 426-498 2-81 (85)
34 TIGR02183 GRXA Glutaredoxin, G 99.6 1.1E-15 2.3E-20 136.0 9.6 73 427-499 2-81 (86)
35 smart00049 DEP Domain found in 99.6 4.2E-16 9.2E-21 135.2 6.5 72 545-616 2-76 (77)
36 cd04450 DEP_RGS7-like DEP (Dis 99.6 6.5E-16 1.4E-20 139.0 6.8 79 538-616 3-83 (88)
37 cd02066 GRX_family Glutaredoxi 99.6 4.1E-15 8.8E-20 122.3 9.8 72 426-497 1-72 (72)
38 cd03030 GRX_SH3BGR Glutaredoxi 99.6 8.3E-15 1.8E-19 133.3 8.9 80 427-506 2-91 (92)
39 cd04371 DEP DEP domain, named 99.6 4.3E-15 9.2E-20 129.3 6.3 78 537-614 2-81 (81)
40 PF00462 Glutaredoxin: Glutare 99.6 1.4E-14 3.1E-19 119.5 8.4 60 427-486 1-60 (60)
41 PRK12759 bifunctional gluaredo 99.5 1.1E-14 2.4E-19 162.8 10.0 82 423-507 1-90 (410)
42 cd04445 DEP_PLEK1 DEP (Disheve 99.5 7.5E-15 1.6E-19 133.9 5.8 85 533-617 1-97 (99)
43 TIGR02194 GlrX_NrdH Glutaredox 99.4 3E-13 6.4E-18 115.9 7.7 64 427-491 1-65 (72)
44 PRK10329 glutaredoxin-like pro 99.4 4.4E-13 9.5E-18 118.8 8.6 65 426-491 2-66 (81)
45 KOG0911 Glutaredoxin-related p 99.4 3.6E-13 7.7E-18 139.1 8.5 82 426-507 140-226 (227)
46 TIGR02196 GlrX_YruB Glutaredox 99.2 6.5E-11 1.4E-15 98.0 8.5 65 427-491 2-66 (74)
47 cd02976 NrdH NrdH-redoxin (Nrd 99.1 2.9E-10 6.2E-15 94.2 8.7 65 427-491 2-66 (73)
48 KOG2824 Glutaredoxin-related p 99.0 5E-10 1.1E-14 118.9 7.9 84 426-509 132-225 (281)
49 TIGR02200 GlrX_actino Glutared 99.0 2.4E-09 5.2E-14 90.6 8.5 64 426-489 1-66 (77)
50 PF04908 SH3BGR: SH3-binding, 98.8 1.2E-08 2.7E-13 94.5 9.0 80 427-506 3-97 (99)
51 cd02973 TRX_GRX_like Thioredox 98.8 7E-09 1.5E-13 86.7 6.6 58 426-487 2-64 (67)
52 KOG3571 Dishevelled 3 and rela 98.8 5E-09 1.1E-13 118.0 5.2 85 533-618 392-478 (626)
53 cd03041 GST_N_2GST_N GST_N fam 98.6 1.4E-07 3.1E-12 81.8 8.8 71 427-497 2-74 (77)
54 cd00570 GST_N_family Glutathio 98.6 1.6E-07 3.4E-12 75.7 6.7 68 428-495 2-69 (71)
55 KOG3572 Uncharacterized conser 98.5 6E-08 1.3E-12 117.6 5.4 87 532-619 1271-1361(1701)
56 cd03040 GST_N_mPGES2 GST_N fam 98.5 5.9E-07 1.3E-11 77.1 9.0 69 426-497 1-73 (77)
57 cd03055 GST_N_Omega GST_N fami 98.5 5.6E-07 1.2E-11 80.3 8.9 79 416-495 8-87 (89)
58 cd03037 GST_N_GRX2 GST_N famil 98.4 6.6E-07 1.4E-11 75.8 7.8 68 428-497 2-70 (71)
59 cd04436 DEP_fRgd2 DEP (Disheve 98.4 3.3E-07 7.1E-12 82.7 4.6 78 537-614 2-83 (84)
60 cd03036 ArsC_like Arsenate Red 98.3 8.8E-07 1.9E-11 82.9 5.1 49 427-475 1-49 (111)
61 cd03059 GST_N_SspA GST_N famil 98.2 3.9E-06 8.5E-11 70.7 7.5 69 427-496 1-69 (73)
62 cd03060 GST_N_Omega_like GST_N 98.2 4.4E-06 9.5E-11 71.0 7.5 66 428-494 2-68 (71)
63 cd02977 ArsC_family Arsenate R 98.2 1.6E-06 3.5E-11 79.6 5.2 49 427-475 1-49 (105)
64 cd03051 GST_N_GTT2_like GST_N 98.2 4.7E-06 1E-10 69.8 6.5 67 428-494 2-71 (74)
65 TIGR00411 redox_disulf_1 small 98.1 7.8E-06 1.7E-10 70.1 7.8 59 426-488 2-67 (82)
66 cd03045 GST_N_Delta_Epsilon GS 98.1 7.9E-06 1.7E-10 69.2 7.1 69 427-495 1-71 (74)
67 PF13417 GST_N_3: Glutathione 98.1 1.1E-05 2.5E-10 69.4 7.1 68 429-497 1-68 (75)
68 cd03056 GST_N_4 GST_N family, 98.0 1.7E-05 3.6E-10 66.6 7.3 68 427-494 1-70 (73)
69 PF05768 DUF836: Glutaredoxin- 98.0 3.1E-05 6.7E-10 68.5 9.0 53 426-483 1-57 (81)
70 PRK01655 spxA transcriptional 98.0 9.9E-06 2.2E-10 78.2 5.9 45 427-471 2-46 (131)
71 cd03026 AhpF_NTD_C TRX-GRX-lik 97.9 2.3E-05 5.1E-10 70.9 6.3 58 426-487 15-77 (89)
72 TIGR00412 redox_disulf_2 small 97.9 3.4E-05 7.4E-10 67.4 6.6 54 427-486 3-60 (76)
73 TIGR01617 arsC_related transcr 97.9 2.4E-05 5.2E-10 73.6 5.9 45 427-471 1-45 (117)
74 cd03032 ArsC_Spx Arsenate Redu 97.8 2.8E-05 6.1E-10 73.1 6.1 45 427-471 2-46 (115)
75 PRK12559 transcriptional regul 97.8 4.1E-05 8.8E-10 74.2 5.8 45 427-471 2-46 (131)
76 PHA02125 thioredoxin-like prot 97.8 8.8E-05 1.9E-09 64.4 7.3 55 427-486 2-56 (75)
77 cd04435 DEP_fRom2 DEP (Disheve 97.7 3.9E-05 8.5E-10 68.8 4.7 77 539-615 4-82 (82)
78 PRK13344 spxA transcriptional 97.7 5.7E-05 1.2E-09 73.3 5.9 45 427-471 2-46 (132)
79 cd03035 ArsC_Yffb Arsenate Red 97.7 6.4E-05 1.4E-09 70.2 5.2 45 427-471 1-45 (105)
80 cd03054 GST_N_Metaxin GST_N fa 97.6 0.00018 3.9E-09 61.2 7.4 56 434-497 15-70 (72)
81 cd03053 GST_N_Phi GST_N family 97.5 0.00035 7.5E-09 59.6 7.9 70 427-496 2-73 (76)
82 cd03058 GST_N_Tau GST_N family 97.5 0.00031 6.8E-09 59.9 7.4 68 428-496 2-70 (74)
83 cd03033 ArsC_15kD Arsenate Red 97.5 0.00014 3E-09 69.0 5.6 45 427-471 2-46 (113)
84 cd03052 GST_N_GDAP1 GST_N fami 97.5 0.00027 5.9E-09 61.2 6.9 69 427-495 1-71 (73)
85 PF13192 Thioredoxin_3: Thiore 97.4 0.00059 1.3E-08 59.6 7.1 54 427-486 3-60 (76)
86 cd03049 GST_N_3 GST_N family, 97.3 0.00061 1.3E-08 57.9 6.7 67 428-495 2-71 (73)
87 cd03042 GST_N_Zeta GST_N famil 97.3 0.00069 1.5E-08 56.9 6.7 68 428-495 2-71 (73)
88 cd02975 PfPDO_like_N Pyrococcu 97.3 0.00063 1.4E-08 63.6 7.0 51 427-481 25-81 (113)
89 cd01659 TRX_superfamily Thiore 97.2 0.001 2.2E-08 50.7 6.3 57 427-484 1-62 (69)
90 cd03080 GST_N_Metaxin_like GST 97.2 0.0014 3.1E-08 56.5 7.3 63 427-497 2-71 (75)
91 cd03039 GST_N_Sigma_like GST_N 97.2 0.0011 2.4E-08 56.3 6.5 68 428-495 2-69 (72)
92 cd03076 GST_N_Pi GST_N family, 97.1 0.0016 3.4E-08 56.0 7.4 69 427-496 2-70 (73)
93 TIGR01295 PedC_BrcD bacterioci 97.1 0.0011 2.4E-08 63.3 6.8 63 427-489 27-106 (122)
94 KOG4023 Uncharacterized conser 97.1 0.00089 1.9E-08 62.6 5.4 80 427-506 4-97 (108)
95 COG1393 ArsC Arsenate reductas 97.1 0.00088 1.9E-08 64.2 5.6 45 427-471 3-47 (117)
96 TIGR02182 GRXB Glutaredoxin, G 97.1 0.0014 3E-08 67.1 7.3 68 428-497 1-69 (209)
97 cd03048 GST_N_Ure2p_like GST_N 97.1 0.0021 4.5E-08 55.8 7.4 69 427-496 2-75 (81)
98 TIGR02187 GlrX_arch Glutaredox 97.1 0.0013 2.8E-08 67.9 7.0 56 426-485 136-196 (215)
99 cd02953 DsbDgamma DsbD gamma f 97.0 0.0017 3.7E-08 58.7 6.9 56 427-482 15-79 (104)
100 PRK10387 glutaredoxin 2; Provi 97.0 0.0018 3.8E-08 65.1 7.6 67 427-495 1-68 (210)
101 PRK10026 arsenate reductase; P 97.0 0.0012 2.5E-08 65.3 6.0 46 426-471 3-48 (141)
102 cd02947 TRX_family TRX family; 97.0 0.0032 6.9E-08 53.1 7.5 56 427-486 14-76 (93)
103 cd03061 GST_N_CLIC GST_N famil 96.9 0.0025 5.5E-08 58.6 7.2 63 433-496 20-82 (91)
104 cd03050 GST_N_Theta GST_N fami 96.9 0.0035 7.6E-08 53.7 7.4 69 427-495 1-71 (76)
105 cd03038 GST_N_etherase_LigE GS 96.9 0.0016 3.5E-08 57.1 5.2 64 433-497 14-80 (84)
106 TIGR00014 arsC arsenate reduct 96.9 0.0014 3.1E-08 61.8 5.0 45 427-471 1-45 (114)
107 PRK10853 putative reductase; P 96.8 0.00088 1.9E-08 64.0 3.4 45 427-471 2-46 (118)
108 cd03034 ArsC_ArsC Arsenate Red 96.8 0.0018 3.9E-08 61.0 5.3 45 427-471 1-45 (112)
109 cd03044 GST_N_EF1Bgamma GST_N 96.8 0.0037 8.1E-08 53.8 6.8 68 428-495 2-71 (75)
110 PRK09481 sspA stringent starva 96.8 0.0037 8.1E-08 63.6 7.5 59 427-486 11-69 (211)
111 cd02950 TxlA TRX-like protein 96.7 0.0059 1.3E-07 59.5 8.3 86 427-517 24-118 (142)
112 cd02949 TRX_NTR TRX domain, no 96.7 0.0042 9.2E-08 55.8 6.7 56 427-486 17-80 (97)
113 TIGR01616 nitro_assoc nitrogen 96.7 0.0026 5.6E-08 61.6 5.6 47 426-472 2-48 (126)
114 PF13409 GST_N_2: Glutathione 96.6 0.003 6.4E-08 54.2 4.9 64 434-497 1-68 (70)
115 PRK15317 alkyl hydroperoxide r 96.5 0.0037 8.1E-08 72.4 6.3 58 426-487 119-181 (517)
116 PHA02278 thioredoxin-like prot 96.5 0.0088 1.9E-07 55.7 7.4 60 427-486 18-85 (103)
117 cd03047 GST_N_2 GST_N family, 96.5 0.0098 2.1E-07 50.7 7.1 67 428-494 2-70 (73)
118 TIGR03140 AhpF alkyl hydropero 96.5 0.004 8.7E-08 72.2 6.3 59 426-488 120-183 (515)
119 cd02954 DIM1 Dim1 family; Dim1 96.4 0.01 2.3E-07 56.8 7.7 57 427-487 18-82 (114)
120 cd03057 GST_N_Beta GST_N famil 96.4 0.0092 2E-07 51.2 6.7 67 428-495 2-71 (77)
121 TIGR03143 AhpF_homolog putativ 96.3 0.006 1.3E-07 71.5 6.5 56 426-485 479-539 (555)
122 cd02957 Phd_like Phosducin (Ph 96.3 0.017 3.8E-07 53.5 8.0 64 427-495 28-98 (113)
123 PTZ00051 thioredoxin; Provisio 96.2 0.018 3.9E-07 51.1 7.2 59 427-489 22-87 (98)
124 cd02985 TRX_CDSP32 TRX family, 96.2 0.024 5.2E-07 51.8 8.2 60 426-486 18-84 (103)
125 cd03046 GST_N_GTT1_like GST_N 96.1 0.018 3.9E-07 48.8 6.5 68 428-496 2-71 (76)
126 cd02989 Phd_like_TxnDC9 Phosdu 96.1 0.016 3.4E-07 54.4 6.6 59 427-489 26-91 (113)
127 PF13098 Thioredoxin_2: Thiore 96.0 0.024 5.1E-07 51.5 7.4 65 426-490 8-103 (112)
128 TIGR00862 O-ClC intracellular 96.0 0.024 5.2E-07 60.3 8.3 58 433-491 17-74 (236)
129 COG4545 Glutaredoxin-related p 96.0 0.018 3.8E-07 51.8 6.0 62 427-488 4-78 (85)
130 cd02951 SoxW SoxW family; SoxW 95.9 0.015 3.2E-07 54.4 6.0 56 426-481 17-90 (125)
131 TIGR01068 thioredoxin thioredo 95.9 0.035 7.6E-07 48.5 7.9 57 427-487 18-82 (101)
132 PF00085 Thioredoxin: Thioredo 95.9 0.032 6.9E-07 49.1 7.6 58 426-487 20-85 (103)
133 cd03043 GST_N_1 GST_N family, 95.9 0.031 6.6E-07 48.2 7.1 64 432-495 7-71 (73)
134 PRK15113 glutathione S-transfe 95.8 0.027 5.8E-07 57.5 7.8 61 426-486 5-69 (214)
135 PRK09381 trxA thioredoxin; Pro 95.8 0.035 7.5E-07 50.5 7.7 60 426-489 24-91 (109)
136 PLN02473 glutathione S-transfe 95.8 0.025 5.4E-07 57.3 7.3 68 427-494 3-72 (214)
137 cd02984 TRX_PICOT TRX domain, 95.6 0.043 9.4E-07 48.4 7.3 56 427-486 18-81 (97)
138 cd03003 PDI_a_ERdj5_N PDIa fam 95.6 0.033 7.3E-07 50.0 6.6 55 426-484 21-83 (101)
139 PF03960 ArsC: ArsC family; I 95.6 0.022 4.9E-07 53.1 5.5 42 430-471 1-42 (110)
140 cd02994 PDI_a_TMX PDIa family, 95.6 0.037 8E-07 49.6 6.7 52 426-481 19-77 (101)
141 KOG0406 Glutathione S-transfer 95.4 0.046 1E-06 58.3 7.9 64 425-489 8-72 (231)
142 cd02959 ERp19 Endoplasmic reti 95.4 0.02 4.3E-07 54.2 4.7 58 427-487 23-91 (117)
143 cd02996 PDI_a_ERp44 PDIa famil 95.4 0.045 9.7E-07 49.9 6.8 54 427-484 22-89 (108)
144 cd02961 PDI_a_family Protein D 95.4 0.051 1.1E-06 46.9 6.8 52 426-481 18-77 (101)
145 cd02948 TRX_NDPK TRX domain, T 95.4 0.049 1.1E-06 49.7 6.9 55 426-485 20-83 (102)
146 cd03004 PDI_a_ERdj5_C PDIa fam 95.3 0.049 1.1E-06 49.0 6.7 52 426-481 22-79 (104)
147 TIGR02187 GlrX_arch Glutaredox 95.3 0.041 8.9E-07 56.9 6.9 59 426-486 22-90 (215)
148 KOG3029 Glutathione S-transfer 95.2 0.043 9.2E-07 59.9 6.9 63 426-491 90-152 (370)
149 cd02956 ybbN ybbN protein fami 95.2 0.057 1.2E-06 47.8 6.6 56 427-486 16-79 (96)
150 cd03002 PDI_a_MPD1_like PDI fa 95.2 0.049 1.1E-06 49.1 6.3 54 426-481 21-80 (109)
151 cd02963 TRX_DnaJ TRX domain, D 95.1 0.055 1.2E-06 50.2 6.5 57 426-486 27-92 (111)
152 cd02999 PDI_a_ERp44_like PDIa 95.0 0.067 1.5E-06 49.0 6.5 52 426-481 21-78 (100)
153 cd02962 TMX2 TMX2 family; comp 94.9 0.061 1.3E-06 53.7 6.7 62 427-488 51-123 (152)
154 cd02993 PDI_a_APS_reductase PD 94.8 0.073 1.6E-06 49.0 6.4 54 426-481 24-84 (109)
155 TIGR01126 pdi_dom protein disu 94.7 0.059 1.3E-06 47.4 5.3 52 426-481 16-75 (102)
156 PRK10996 thioredoxin 2; Provis 94.7 0.11 2.4E-06 50.4 7.6 57 426-486 55-119 (139)
157 cd02987 Phd_like_Phd Phosducin 94.6 0.091 2E-06 53.3 7.1 58 427-489 87-151 (175)
158 cd03001 PDI_a_P5 PDIa family, 94.6 0.1 2.3E-06 46.3 6.7 51 427-481 22-78 (103)
159 PTZ00443 Thioredoxin domain-co 94.6 0.12 2.7E-06 54.7 8.2 57 426-486 55-119 (224)
160 cd02965 HyaE HyaE family; HyaE 94.6 0.085 1.8E-06 50.4 6.4 61 426-490 30-100 (111)
161 cd03005 PDI_a_ERp46 PDIa famil 94.6 0.085 1.8E-06 46.8 6.0 55 426-484 19-84 (102)
162 cd02998 PDI_a_ERp38 PDIa famil 94.5 0.095 2.1E-06 46.3 6.2 52 426-481 21-81 (105)
163 PLN02378 glutathione S-transfe 94.5 0.083 1.8E-06 54.2 6.5 55 433-488 18-72 (213)
164 TIGR01262 maiA maleylacetoacet 94.5 0.061 1.3E-06 54.1 5.4 63 428-490 1-66 (210)
165 PLN02395 glutathione S-transfe 94.3 0.13 2.8E-06 52.1 7.4 63 427-490 3-67 (215)
166 PRK10877 protein disulfide iso 94.2 0.18 3.8E-06 53.5 8.5 68 424-491 108-219 (232)
167 cd03006 PDI_a_EFP1_N PDIa fami 94.2 0.12 2.6E-06 49.1 6.3 53 426-481 32-90 (113)
168 PLN02817 glutathione dehydroge 94.1 0.11 2.4E-06 56.0 6.7 57 433-490 71-127 (265)
169 cd03000 PDI_a_TMX3 PDIa family 93.8 0.14 3E-06 46.5 5.9 51 427-481 19-78 (104)
170 KOG0910 Thioredoxin-like prote 93.6 0.086 1.9E-06 52.9 4.5 56 427-486 65-128 (150)
171 cd02955 SSP411 TRX domain, SSP 93.6 0.17 3.7E-06 49.0 6.3 63 427-489 19-97 (124)
172 PRK13728 conjugal transfer pro 93.6 0.2 4.4E-06 51.6 7.2 55 427-481 73-142 (181)
173 cd02997 PDI_a_PDIR PDIa family 93.5 0.18 4E-06 44.7 6.0 57 426-484 20-86 (104)
174 COG0625 Gst Glutathione S-tran 93.4 0.15 3.3E-06 51.7 6.1 57 428-484 2-59 (211)
175 COG3118 Thioredoxin domain-con 93.3 0.15 3.2E-06 56.2 6.0 62 426-491 46-115 (304)
176 PRK10357 putative glutathione 93.3 0.17 3.7E-06 50.8 6.1 58 428-486 2-60 (202)
177 cd02952 TRP14_like Human TRX-r 93.1 0.16 3.4E-06 49.0 5.3 55 427-481 25-96 (119)
178 cd02972 DsbA_family DsbA famil 93.0 0.29 6.3E-06 41.9 6.4 57 427-483 1-91 (98)
179 cd03077 GST_N_Alpha GST_N fami 92.8 0.61 1.3E-05 40.9 8.1 68 427-495 2-71 (79)
180 cd02995 PDI_a_PDI_a'_C PDIa fa 92.5 0.27 5.9E-06 43.5 5.7 51 426-481 21-79 (104)
181 PF14595 Thioredoxin_9: Thiore 92.5 0.064 1.4E-06 52.1 1.8 63 426-489 44-114 (129)
182 PRK13972 GSH-dependent disulfi 92.5 0.39 8.4E-06 49.0 7.4 54 427-481 2-57 (215)
183 cd03009 TryX_like_TryX_NRX Try 92.4 0.57 1.2E-05 44.0 7.9 55 427-481 22-105 (131)
184 KOG0907 Thioredoxin [Posttrans 92.4 0.28 6.1E-06 46.3 5.8 54 427-484 25-85 (106)
185 cd03020 DsbA_DsbC_DsbG DsbA fa 92.3 0.53 1.2E-05 47.9 8.2 33 425-457 79-113 (197)
186 cd02964 TryX_like_family Trypa 92.2 0.61 1.3E-05 44.2 7.9 55 427-481 21-105 (132)
187 PF02798 GST_N: Glutathione S- 91.6 0.73 1.6E-05 40.1 7.1 66 427-494 3-72 (76)
188 cd02992 PDI_a_QSOX PDIa family 91.6 0.38 8.3E-06 45.1 5.8 54 426-481 22-84 (114)
189 cd02988 Phd_like_VIAF Phosduci 91.4 0.39 8.4E-06 49.7 6.0 56 427-489 106-168 (192)
190 PTZ00057 glutathione s-transfe 91.3 0.64 1.4E-05 47.3 7.5 71 423-493 1-76 (205)
191 cd03065 PDI_b_Calsequestrin_N 91.2 0.54 1.2E-05 45.4 6.4 57 427-487 31-101 (120)
192 cd02986 DLP Dim1 family, Dim1- 91.0 0.42 9.1E-06 46.1 5.5 56 427-486 18-81 (114)
193 cd03078 GST_N_Metaxin1_like GS 90.6 0.71 1.5E-05 40.5 6.1 56 434-497 15-70 (73)
194 TIGR02740 TraF-like TraF-like 90.4 0.56 1.2E-05 50.9 6.4 56 426-481 169-235 (271)
195 PLN00410 U5 snRNP protein, DIM 90.1 0.63 1.4E-05 46.4 5.9 54 427-484 27-89 (142)
196 cd03023 DsbA_Com1_like DsbA fa 90.0 1.6 3.4E-05 41.1 8.4 23 425-447 7-29 (154)
197 PF13899 Thioredoxin_7: Thiore 89.9 0.59 1.3E-05 41.0 5.0 50 427-481 21-79 (82)
198 PF06953 ArsD: Arsenical resis 89.1 1.6 3.5E-05 42.7 7.7 68 423-491 1-90 (123)
199 cd02982 PDI_b'_family Protein 88.6 0.91 2E-05 40.5 5.4 52 426-481 15-74 (103)
200 TIGR02738 TrbB type-F conjugat 88.3 1.4 3.1E-05 44.1 7.0 56 426-481 53-124 (153)
201 TIGR00424 APS_reduc 5'-adenyly 88.2 1.1 2.4E-05 52.4 7.1 53 427-481 375-434 (463)
202 KOG1422 Intracellular Cl- chan 87.9 1.2 2.6E-05 47.3 6.3 57 434-493 20-78 (221)
203 cd03079 GST_N_Metaxin2 GST_N f 87.8 0.96 2.1E-05 40.3 4.9 57 433-496 15-71 (74)
204 PRK11752 putative S-transferas 87.7 1.4 3E-05 47.2 7.0 57 426-483 44-108 (264)
205 PF06764 DUF1223: Protein of u 87.6 1.7 3.7E-05 45.7 7.4 64 427-490 2-86 (202)
206 PF13728 TraF: F plasmid trans 87.1 1.4 3E-05 46.4 6.5 56 426-481 123-189 (215)
207 PRK00293 dipZ thiol:disulfide 86.7 1.6 3.5E-05 52.1 7.4 55 427-481 478-540 (571)
208 PTZ00102 disulphide isomerase; 86.7 1.4 3.1E-05 50.0 6.7 52 426-481 52-112 (477)
209 TIGR01130 ER_PDI_fam protein d 86.0 1.7 3.7E-05 48.6 6.9 55 427-485 22-87 (462)
210 COG2143 Thioredoxin-related pr 86.0 1.6 3.6E-05 44.6 5.9 61 427-487 46-130 (182)
211 PTZ00062 glutaredoxin; Provisi 85.7 1.5 3.3E-05 46.0 5.9 52 427-490 21-79 (204)
212 COG3019 Predicted metal-bindin 85.7 3.3 7.1E-05 41.6 7.7 66 426-491 27-92 (149)
213 cd03010 TlpA_like_DsbE TlpA-li 85.3 3.9 8.4E-05 38.1 7.8 35 427-461 29-67 (127)
214 PLN02309 5'-adenylylsulfate re 84.7 1.8 3.8E-05 50.7 6.3 53 426-481 368-428 (457)
215 PRK10542 glutathionine S-trans 84.7 2.1 4.5E-05 42.8 6.1 59 428-487 2-64 (201)
216 PRK03147 thiol-disulfide oxido 83.7 3.3 7.2E-05 40.4 6.9 36 426-461 64-106 (173)
217 cd02967 mauD Methylamine utili 83.3 3.9 8.5E-05 37.1 6.8 54 426-480 24-83 (114)
218 cd03075 GST_N_Mu GST_N family, 83.1 5 0.00011 35.5 7.2 67 429-495 3-77 (82)
219 TIGR02661 MauD methylamine deh 82.9 4.3 9.4E-05 41.4 7.6 33 426-458 77-113 (189)
220 COG2999 GrxB Glutaredoxin 2 [P 82.2 1.7 3.7E-05 45.2 4.3 63 429-493 3-66 (215)
221 cd03011 TlpA_like_ScsD_MtbDsbE 82.0 1.5 3.2E-05 40.4 3.5 22 426-447 23-44 (123)
222 PRK15412 thiol:disulfide inter 81.9 4.8 0.0001 40.8 7.4 36 427-462 72-110 (185)
223 TIGR00385 dsbE periplasmic pro 81.8 5.7 0.00012 39.7 7.8 34 427-460 67-103 (173)
224 PTZ00102 disulphide isomerase; 80.8 2.5 5.5E-05 48.0 5.6 52 426-481 378-437 (477)
225 cd02966 TlpA_like_family TlpA- 80.7 5.8 0.00013 34.5 6.7 42 426-467 22-71 (116)
226 cd03008 TryX_like_RdCVF Trypar 80.1 4.2 9.2E-05 40.6 6.2 36 427-462 29-78 (146)
227 KOG4244 Failed axon connection 79.0 2.3 5E-05 46.5 4.2 61 426-494 45-112 (281)
228 PF08534 Redoxin: Redoxin; In 78.8 7.9 0.00017 36.9 7.4 50 427-478 32-89 (146)
229 KOG0867 Glutathione S-transfer 77.0 6.2 0.00013 41.6 6.7 63 427-489 3-67 (226)
230 COG0526 TrxA Thiol-disulfide i 76.8 6.5 0.00014 33.3 5.6 48 431-480 40-94 (127)
231 COG5494 Predicted thioredoxin/ 76.5 6 0.00013 42.3 6.2 58 427-488 13-72 (265)
232 PHA03075 glutaredoxin-like pro 76.5 3 6.4E-05 40.7 3.7 35 423-457 1-35 (123)
233 cd02958 UAS UAS family; UAS is 76.3 4.2 9E-05 37.7 4.6 54 427-481 21-82 (114)
234 KOG0868 Glutathione S-transfer 76.2 3.7 8.1E-05 42.9 4.6 61 426-488 5-70 (217)
235 TIGR02739 TraF type-F conjugat 75.8 5.9 0.00013 43.2 6.2 58 426-483 153-221 (256)
236 PF13905 Thioredoxin_8: Thiore 75.6 5.2 0.00011 35.3 4.9 34 427-460 5-46 (95)
237 KOG1695 Glutathione S-transfer 75.1 7.7 0.00017 41.0 6.7 68 426-494 3-70 (206)
238 PF07315 DUF1462: Protein of u 74.6 18 0.00039 34.0 8.1 68 428-495 1-88 (93)
239 TIGR01130 ER_PDI_fam protein d 73.8 5.2 0.00011 44.8 5.5 50 426-481 367-425 (462)
240 cd03007 PDI_a_ERp29_N PDIa fam 73.4 12 0.00027 36.1 7.1 55 427-481 22-86 (116)
241 COG5422 ROM1 RhoGEF, Guanine n 73.2 0.38 8.3E-06 59.1 -3.8 76 535-610 276-352 (1175)
242 PRK11657 dsbG disulfide isomer 71.9 4.4 9.5E-05 43.6 4.1 33 425-457 119-155 (251)
243 cd02970 PRX_like2 Peroxiredoxi 68.7 14 0.00031 34.7 6.4 52 427-480 27-86 (149)
244 PF00578 AhpC-TSA: AhpC/TSA fa 68.7 16 0.00034 33.4 6.5 53 427-481 29-89 (124)
245 PRK13703 conjugal pilus assemb 65.4 14 0.00029 40.3 6.2 58 425-482 145-213 (248)
246 PF06110 DUF953: Eukaryotic pr 63.6 5.5 0.00012 38.7 2.5 50 432-481 35-95 (119)
247 KOG0190 Protein disulfide isom 63.3 12 0.00027 44.3 5.8 55 427-485 46-111 (493)
248 PRK14018 trifunctional thiored 63.2 17 0.00037 43.5 6.9 21 427-447 60-80 (521)
249 smart00594 UAS UAS domain. 62.0 29 0.00063 32.9 7.1 52 427-483 31-94 (122)
250 PTZ00056 glutathione peroxidas 60.0 22 0.00047 36.9 6.3 32 427-458 43-81 (199)
251 PF11009 DUF2847: Protein of u 59.5 40 0.00087 32.4 7.4 61 426-486 21-91 (105)
252 COG4837 Uncharacterized protei 59.3 44 0.00095 31.9 7.4 71 426-496 6-96 (106)
253 cd03012 TlpA_like_DipZ_like Tl 58.0 30 0.00066 32.4 6.4 22 426-447 26-47 (126)
254 COG5429 Uncharacterized secret 57.6 21 0.00045 38.9 5.8 78 425-509 43-141 (261)
255 PF10568 Tom37: Outer mitochon 57.6 26 0.00057 31.0 5.5 54 435-496 14-71 (72)
256 cd03019 DsbA_DsbA DsbA family, 56.2 15 0.00033 35.8 4.3 24 424-447 16-39 (178)
257 cd03017 PRX_BCP Peroxiredoxin 56.1 30 0.00065 32.4 6.1 46 432-479 33-85 (140)
258 cd00340 GSH_Peroxidase Glutath 55.3 26 0.00055 34.2 5.6 31 427-458 26-63 (152)
259 KOG4420 Uncharacterized conser 55.1 9.1 0.0002 42.1 2.7 72 427-498 27-100 (325)
260 COG3634 AhpF Alkyl hydroperoxi 54.9 16 0.00034 42.1 4.5 79 426-514 119-200 (520)
261 TIGR02540 gpx7 putative glutat 53.5 35 0.00075 33.3 6.2 31 427-457 26-63 (153)
262 PLN02412 probable glutathione 53.2 31 0.00067 34.5 6.0 53 427-480 33-100 (167)
263 cd03018 PRX_AhpE_like Peroxire 52.6 27 0.00058 33.2 5.2 50 427-478 32-89 (149)
264 TIGR00869 sec62 protein transl 51.9 13 0.00029 40.1 3.3 42 562-603 20-75 (232)
265 cd02971 PRX_family Peroxiredox 51.1 43 0.00093 31.3 6.3 52 427-479 26-85 (140)
266 PTZ00256 glutathione peroxidas 49.6 45 0.00098 33.8 6.5 52 428-480 46-112 (183)
267 PRK09437 bcp thioredoxin-depen 49.1 40 0.00088 32.5 5.9 45 433-479 41-92 (154)
268 cd02968 SCO SCO (an acronym fo 47.6 50 0.0011 31.0 6.1 34 426-459 25-69 (142)
269 cd03015 PRX_Typ2cys Peroxiredo 47.2 45 0.00098 33.2 6.0 33 427-459 32-73 (173)
270 cd02960 AGR Anterior Gradient 45.8 18 0.00038 35.8 2.8 19 427-445 27-45 (130)
271 PF10865 DUF2703: Domain of un 45.0 38 0.00082 33.3 4.9 46 434-486 14-72 (120)
272 PF13462 Thioredoxin_4: Thiore 44.5 24 0.00052 33.8 3.5 36 424-459 13-56 (162)
273 KOG2501 Thioredoxin, nucleored 43.8 1.3E+02 0.0028 31.0 8.6 53 429-481 39-121 (157)
274 PF01323 DSBA: DSBA-like thior 43.7 45 0.00098 32.9 5.4 37 426-462 1-42 (193)
275 KOG0912 Thiol-disulfide isomer 42.9 1.8E+02 0.004 33.2 10.2 34 563-596 189-228 (375)
276 COG1651 DsbG Protein-disulfide 41.8 35 0.00076 35.6 4.5 23 470-492 210-232 (244)
277 KOG4277 Uncharacterized conser 41.5 16 0.00034 41.1 1.9 55 427-481 47-106 (468)
278 PLN02399 phospholipid hydroper 41.0 71 0.0015 34.5 6.7 33 426-458 102-141 (236)
279 KOG3425 Uncharacterized conser 40.2 24 0.00052 34.9 2.7 31 432-462 42-78 (128)
280 PF03190 Thioredox_DsbH: Prote 39.9 1E+02 0.0022 31.8 7.3 59 427-488 41-118 (163)
281 TIGR01626 ytfJ_HI0045 conserve 39.4 73 0.0016 33.3 6.3 36 426-461 62-106 (184)
282 cd02969 PRX_like1 Peroxiredoxi 38.9 94 0.002 30.7 6.8 34 426-459 28-68 (171)
283 PF13462 Thioredoxin_4: Thiore 38.8 42 0.00091 32.1 4.2 25 469-493 130-154 (162)
284 cd03014 PRX_Atyp2cys Peroxired 38.6 87 0.0019 29.7 6.3 51 427-478 30-86 (143)
285 KOG0190 Protein disulfide isom 35.1 18 0.00039 43.0 1.2 28 426-453 387-414 (493)
286 KOG0191 Thioredoxin/protein di 35.0 38 0.00083 38.2 3.8 52 426-481 50-107 (383)
287 cd03022 DsbA_HCCA_Iso DsbA fam 34.7 43 0.00092 33.2 3.7 56 440-495 125-187 (192)
288 KOG0908 Thioredoxin-like prote 34.5 65 0.0014 35.7 5.1 56 427-486 25-87 (288)
289 PLN02919 haloacid dehalogenase 33.2 85 0.0018 40.7 6.8 21 427-447 424-444 (1057)
290 PRK11509 hydrogenase-1 operon 31.9 1E+02 0.0022 30.7 5.7 52 435-490 48-108 (132)
291 TIGR03137 AhpC peroxiredoxin. 31.8 1.1E+02 0.0024 31.2 6.1 34 427-460 34-76 (187)
292 TIGR03143 AhpF_homolog putativ 31.8 48 0.001 39.5 4.0 62 414-481 357-425 (555)
293 PF04134 DUF393: Protein of un 30.8 1.6E+02 0.0034 27.2 6.5 77 430-508 2-87 (114)
294 cd05295 MDH_like Malate dehydr 30.7 82 0.0018 37.3 5.6 66 432-497 1-82 (452)
295 PF01323 DSBA: DSBA-like thior 29.0 34 0.00073 33.8 1.9 55 441-495 126-188 (193)
296 PF09413 DUF2007: Domain of un 28.3 60 0.0013 27.5 3.0 53 427-484 1-53 (67)
297 COG2761 FrnE Predicted dithiol 26.6 33 0.00072 37.0 1.4 27 422-448 3-29 (225)
298 KOG4700 Uncharacterized homolo 24.9 2.4E+02 0.0052 30.0 7.0 64 466-529 104-171 (207)
299 KOG0191 Thioredoxin/protein di 24.4 1.1E+02 0.0024 34.6 5.1 54 426-481 165-224 (383)
300 cd03016 PRX_1cys Peroxiredoxin 24.2 1.4E+02 0.0031 30.8 5.5 53 427-479 28-93 (203)
301 cd04816 PA_SaNapH_like PA_SaNa 24.1 1.6E+02 0.0035 28.0 5.4 62 422-484 41-103 (122)
302 PRK10954 periplasmic protein d 22.8 86 0.0019 32.4 3.5 20 424-443 38-57 (207)
303 cd03021 DsbA_GSTK DsbA family, 22.8 1.1E+02 0.0024 31.5 4.4 33 426-458 2-38 (209)
304 COG4232 Thiol:disulfide interc 20.7 1.4E+02 0.003 36.4 5.1 68 409-481 464-540 (569)
305 KOG0913 Thiol-disulfide isomer 20.7 30 0.00064 37.7 -0.3 50 427-480 43-99 (248)
306 TIGR03439 methyl_EasF probable 20.3 1.8E+02 0.0039 32.8 5.6 60 432-494 82-146 (319)
307 TIGR03759 conj_TIGR03759 integ 20.3 1.8E+02 0.0039 31.1 5.2 62 421-486 106-170 (200)
No 1
>PF04784 DUF547: Protein of unknown function, DUF547; InterPro: IPR006869 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans and Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.8e-37 Score=289.77 Aligned_cols=112 Identities=52% Similarity=0.979 Sum_probs=105.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhh---hccCCCeEEEEcCEEecHHHHHhhhccCCCCCCCCCC
Q 003162 690 RVELQDMPREEMLAFFINLYNMMAIHAILVCGHPIGALER---RKFFGDFKYVIGGYTYSLSAIQNGILRGNQRPPYNLM 766 (843)
Q Consensus 690 ~VdL~~Ls~eEKLAFwINlYNaLvIHaiL~~G~P~s~l~r---~~FF~~~~Y~IGG~~~SLdDIEHgILR~n~~~p~~l~ 766 (843)
+||++.|+++||+|||||+||+|+||+++..|+|.+..++ ..||++..|.|||+.+||+||||+|||+++++
T Consensus 1 ~v~~~~l~~~e~lAFwIN~yNal~~h~~l~~~~~~s~~~~~~~~~~~~~~~y~Igg~~~SL~dIe~~ILR~~~~~----- 75 (117)
T PF04784_consen 1 RVDLSSLSREEKLAFWINLYNALVLHAILENGPPKSILDRKLGGSFFSKVRYNIGGQRFSLDDIEHGILRGNRPP----- 75 (117)
T ss_pred CcChHHCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhcccccccceEEEECCEEecHHHHHHhhccCCCCC-----
Confidence 4789999999999999999999999999999988787776 69999999999999999999999999997542
Q ss_pred CCCCCccccccccCCCCCceeEEEeccCCCCCCcee--eecccchHHHHHHHHHHHH
Q 003162 767 KPFGAKDKRSQVALPYPEPSTHFALVCGTRSSPALR--CYSPGNIDKELMKAARSFL 821 (843)
Q Consensus 767 kpF~~~D~R~~~aL~~~DPRIHFALnCGS~SCPpLr--aYtpe~LdeQLe~Aar~FL 821 (843)
+.|||||||||||++|||||| +|+|++|++||++||++||
T Consensus 76 ---------------~~DprihFaL~cgs~s~P~lr~~~yt~~~l~~qL~~a~~~fi 117 (117)
T PF04784_consen 76 ---------------WPDPRIHFALNCGSKSCPPLRREAYTAENLDEQLEEAAREFI 117 (117)
T ss_pred ---------------CCCCceeeeeecCCCCChhhhhhccCHHHHHHHHHHHHHhhC
Confidence 689999999999999999999 9999999999999999997
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.84 E-value=9.3e-21 Score=173.15 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=78.3
Q ss_pred cccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh---HHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCc
Q 003162 424 KGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS---RKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGK 500 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e---~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGe 500 (843)
.++|+||++++||||.+||++|.++|++|+++||+.++. .++++.+++|++|||||||+|++||||+++.+++++|+
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G~ 86 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISGS 86 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcCC
Confidence 357999999999999999999999999999999997765 45577888899999999999999999999999999999
Q ss_pred chHHHHHH
Q 003162 501 LDEKIEYL 508 (843)
Q Consensus 501 L~~lLk~~ 508 (843)
|+++|+.+
T Consensus 87 L~~~l~~~ 94 (99)
T TIGR02189 87 LVPMLKQA 94 (99)
T ss_pred HHHHHHHh
Confidence 99999765
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.83 E-value=1.3e-20 Score=177.44 Aligned_cols=87 Identities=22% Similarity=0.349 Sum_probs=82.3
Q ss_pred cccEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhc
Q 003162 424 KGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (843)
Q Consensus 424 kgkVVIYTk-----~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (843)
.++|+||++ |+||||.+||++|..+|++|.++||+.+++.+++|++++|++|||||||||++|||+|++.+++++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~~ 93 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQR 93 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHC
Confidence 357999999 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHh
Q 003162 499 GKLDEKIEYLIT 510 (843)
Q Consensus 499 GeL~~lLk~~~~ 510 (843)
|+|+++|+.+..
T Consensus 94 G~L~~lL~~~~~ 105 (115)
T PRK10824 94 GELQQLIKETAA 105 (115)
T ss_pred CCHHHHHHHHHh
Confidence 999999987644
No 4
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.82 E-value=1.3e-20 Score=171.35 Aligned_cols=72 Identities=35% Similarity=0.561 Sum_probs=68.6
Q ss_pred CceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCCceEEecCC
Q 003162 547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDH 618 (843)
Q Consensus 547 gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYRF~~d 618 (843)
+..|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||..|
T Consensus 21 ~~likdR~~~l~~y~~cFvGsElVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~HV~~~h~F~D~~lfYrF~~d 93 (93)
T cd04440 21 TPVVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVILGVGLCNNGFMHHVLEKSEFKDEPLLFRFYAD 93 (93)
T ss_pred ccceeeceeccEEcccccchhHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCEEecCCCcCcCCcCeEEEEecC
Confidence 458999999999999999999999999998 678999999999999999999999999999999999999864
No 5
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=99.82 E-value=7.5e-21 Score=169.00 Aligned_cols=79 Identities=30% Similarity=0.561 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 003162 536 ELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR 614 (843)
Q Consensus 536 eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYR 614 (843)
+|+..|+++..|+.|+||++++++|++||+|+||||||+++ .+.+|+||+.+||.|+++|+|+||.++|.|+|+++|||
T Consensus 1 ~l~~~m~~~~~gv~i~drr~~~~~y~~cF~GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i~hV~~~~~F~D~~~~Yr 80 (81)
T cd04448 1 DLWEKICRSSTGIEFQDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAIGQALLDAGWIECVSDDDLFRDEYALYK 80 (81)
T ss_pred CHHHHhhCcCCCCeeEEEEECCEEcCcccChHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCccccCccccC
Confidence 47788999999999999999999999999999999999998 57999999999999999999999999999999999998
No 6
>PHA03050 glutaredoxin; Provisional
Probab=99.82 E-value=3.4e-20 Score=172.48 Aligned_cols=86 Identities=21% Similarity=0.407 Sum_probs=80.5
Q ss_pred cccEEEEEcCCChhHHHHHHHHHhcCC---ceEEEEcCC---ChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 424 KGRVILYTRLGCQESREVRLFLYWKRL---RYVEINIDV---YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~lL~~lGI---~YeeIDId~---d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
.++|+||+++|||||.+||++|+++|+ +|+.+||+. .++.+++|.+.+|++|||+|||||++|||+++|+++++
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDN 91 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHH
Confidence 347999999999999999999999999 799999986 56789999999999999999999999999999999999
Q ss_pred cCcchHHHHHHH
Q 003162 498 SGKLDEKIEYLI 509 (843)
Q Consensus 498 sGeL~~lLk~~~ 509 (843)
+|+|.++|+.+.
T Consensus 92 ~g~L~~~l~~~~ 103 (108)
T PHA03050 92 MDALGDILSSIG 103 (108)
T ss_pred cCCHHHHHHHcc
Confidence 999999998763
No 7
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.81 E-value=6.7e-20 Score=166.96 Aligned_cols=82 Identities=17% Similarity=0.355 Sum_probs=78.2
Q ss_pred cccEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhc
Q 003162 424 KGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (843)
Q Consensus 424 kgkVVIYTk-----~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (843)
.++|+||++ ++||||.+||++|+++||+|.++||..+++.+++|++++|++|||||||||++|||++++.+++++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~~ 90 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQS 90 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHHC
Confidence 357999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHH
Q 003162 499 GKLDEKI 505 (843)
Q Consensus 499 GeL~~lL 505 (843)
|+|.++|
T Consensus 91 g~L~~~l 97 (97)
T TIGR00365 91 GELQTLL 97 (97)
T ss_pred cChHHhC
Confidence 9999875
No 8
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.80 E-value=4.5e-20 Score=164.54 Aligned_cols=72 Identities=38% Similarity=0.695 Sum_probs=68.0
Q ss_pred ccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhccccccccccc-ccccCCceEEe
Q 003162 544 MKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDEN-LFEDGNHLYRF 615 (843)
Q Consensus 544 ~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~-~F~D~~~LYRF 615 (843)
+..+..|+||+|++++|++||+|+||||||+++ .+.+|+||+.+||.|++.|+|+||.++| .|+|+++||||
T Consensus 9 ~~~~~~IkdR~~~~r~y~~cF~GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYrF 82 (82)
T cd04442 9 LHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF 82 (82)
T ss_pred cCCCCeeeeeEECCEEcCceeEcHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEeccCCcCceeCCceeeeC
Confidence 456789999999999999999999999999998 5689999999999999999999999998 69999999998
No 9
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=99.80 E-value=1.8e-19 Score=171.92 Aligned_cols=80 Identities=28% Similarity=0.467 Sum_probs=74.2
Q ss_pred cCCceeeecccceeeecccccchhHHHHHHhh--ccCCHHHHHHHHHHHHhcccccccccccccccCCceEEecCCCCcc
Q 003162 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRFLDHDPLV 622 (843)
Q Consensus 545 ~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~--~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYRF~~ddP~~ 622 (843)
..+..||||+|++++|++||+|+||||||+++ .+.+|+||+.+||.|++.|+|+||.++|.|.|+++||||..+.+..
T Consensus 12 ~~~~~ikdR~~~~~~y~~cF~GsElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~ 91 (125)
T cd04437 12 DAPHLIRDRKYHLRTYRQCCVGTELVDWLLQQSPCVQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSP 91 (125)
T ss_pred cCcccceeeeECCEECCcccccHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCc
Confidence 34779999999999999999999999999999 3689999999999999999999999999999999999999997775
Q ss_pred cc
Q 003162 623 SS 624 (843)
Q Consensus 623 ~s 624 (843)
.+
T Consensus 92 ~~ 93 (125)
T cd04437 92 AP 93 (125)
T ss_pred cc
Confidence 43
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.79 E-value=3.7e-19 Score=156.11 Aligned_cols=81 Identities=31% Similarity=0.530 Sum_probs=78.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcchHHH
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI 505 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~~lL 505 (843)
+|+||++++||||.+|+.+|+.+|++|+++||+.+++.++++.+++|..+||+||+||++|||++++++++++|+|.++|
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~~~ 82 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLL 82 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHHHh
Confidence 79999999999999999999999999999999999888899999999999999999999999999999999999999987
Q ss_pred H
Q 003162 506 E 506 (843)
Q Consensus 506 k 506 (843)
+
T Consensus 83 ~ 83 (83)
T PRK10638 83 K 83 (83)
T ss_pred C
Confidence 4
No 11
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=99.78 E-value=1.2e-19 Score=161.54 Aligned_cols=71 Identities=38% Similarity=0.651 Sum_probs=67.5
Q ss_pred cCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 003162 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (843)
Q Consensus 545 ~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYRF 615 (843)
..+..|+||+|++++|++||+|+|+|+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|+|+++||||
T Consensus 10 ~~~~~ikdr~~~~~~~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF 81 (81)
T cd04439 10 KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF 81 (81)
T ss_pred cCCCceEeeEECcEEcCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence 35678999999999999999999999999998 678899999999999999999999999999999999998
No 12
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=99.78 E-value=1.9e-19 Score=161.54 Aligned_cols=69 Identities=30% Similarity=0.509 Sum_probs=66.2
Q ss_pred CceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 003162 547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (843)
Q Consensus 547 gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYRF 615 (843)
+..|++|++++++|++||+|+||||||+++ .+.+|+||+.+||.|+++|+|+||.++|.|+|+++||||
T Consensus 16 ~~~ik~R~~~~~~y~~cF~GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~fYrF 85 (85)
T cd04441 16 NSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQF 85 (85)
T ss_pred CCceeeeEeCCEEcCCEeEchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCeeeeC
Confidence 458999999999999999999999999999 578999999999999999999999999999999999998
No 13
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=99.78 E-value=2.1e-19 Score=160.61 Aligned_cols=79 Identities=34% Similarity=0.530 Sum_probs=70.3
Q ss_pred HHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCCceEEe
Q 003162 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYRF 615 (843)
Q Consensus 537 La~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYRF 615 (843)
+.........+..|+||+|++++|++||+|+|||+||++. .+.+|+||+.+||.|++.|+|+||.+++.|+|+++||||
T Consensus 4 f~~~~~~~~~~~~ikdR~~~~~~y~~cF~GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~~YrF 83 (83)
T cd04443 4 FVRYHLDQCRQDIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENLLYRF 83 (83)
T ss_pred HHHHHHhcccchhhccceecceeccccccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCCcCEecCCeeEeC
Confidence 3333334444458999999999999999999999999998 678999999999999999999999999999999999998
No 14
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=99.78 E-value=2.2e-19 Score=160.72 Aligned_cols=79 Identities=23% Similarity=0.437 Sum_probs=73.6
Q ss_pred HHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh--ccCCHHHHHHHHHHHHhcccccccccccccccCCceEE
Q 003162 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHLYR 614 (843)
Q Consensus 537 La~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~--~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~LYR 614 (843)
++..|+++..|+.|+||+|++++|++||+|+|||+||+++ .+.+|+||+.+||.|++.|+|+||.++|.|.|+ .||+
T Consensus 3 i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~-~yy~ 81 (84)
T cd04438 3 IPRVMRRPDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVNKITFSEQ-CYYV 81 (84)
T ss_pred hhHhhcCCCCCCceEEEEEeeEECCccccchHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCCCccccCC-eEEe
Confidence 5667888889999999999999999999999999999997 478999999999999999999999999999964 8999
Q ss_pred ec
Q 003162 615 FL 616 (843)
Q Consensus 615 F~ 616 (843)
|-
T Consensus 82 ~~ 83 (84)
T cd04438 82 FG 83 (84)
T ss_pred cC
Confidence 85
No 15
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.78 E-value=7.2e-19 Score=151.83 Aligned_cols=79 Identities=32% Similarity=0.573 Sum_probs=76.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcchHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLDEKI 505 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~~lL 505 (843)
|+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+++|+.+||+|||+|++|||++++.+++++|+|.++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l 79 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL 79 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998875
No 16
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.78 E-value=9.1e-19 Score=156.77 Aligned_cols=78 Identities=24% Similarity=0.409 Sum_probs=75.1
Q ss_pred ccEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcC
Q 003162 425 GRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (843)
Q Consensus 425 gkVVIYTk-----~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (843)
++|+||++ ++||||.+||++|+++|++|+++||..+++.+++|.+++|+.|||+|||||++|||++++++++++|
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~~g 87 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHESG 87 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHHcC
Confidence 46999998 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cch
Q 003162 500 KLD 502 (843)
Q Consensus 500 eL~ 502 (843)
+|+
T Consensus 88 ~L~ 90 (90)
T cd03028 88 ELQ 90 (90)
T ss_pred CcC
Confidence 985
No 17
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=99.77 E-value=2.6e-19 Score=159.47 Aligned_cols=80 Identities=34% Similarity=0.490 Sum_probs=73.2
Q ss_pred HHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh--ccCCHHHHHHHHHHHHhcccccccccccccccCCce
Q 003162 535 DELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGNHL 612 (843)
Q Consensus 535 ~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~--~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~~L 612 (843)
.+|+..|+++.. +.|++|+|++++|++||+|+|+|+||+++ .+.+|+||+.+||.|+++|+|+||.++|.|.|+++|
T Consensus 2 ~~i~~~m~~~~~-~~i~~r~~~~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I~hv~~~~~F~d~~~~ 80 (83)
T cd04449 2 AEIAEAMRDPSG-IGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVELGQELMNEGLIEHVSGRHPFLDGFYF 80 (83)
T ss_pred HHHHHHHhCCCC-CceeechhcCccCCcceEhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCEe
Confidence 456777777665 57999999999999999999999999998 479999999999999999999999999999999999
Q ss_pred EEe
Q 003162 613 YRF 615 (843)
Q Consensus 613 YRF 615 (843)
||+
T Consensus 81 Yr~ 83 (83)
T cd04449 81 YYI 83 (83)
T ss_pred EeC
Confidence 996
No 18
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=99.73 E-value=2.2e-18 Score=157.49 Aligned_cols=76 Identities=33% Similarity=0.535 Sum_probs=68.8
Q ss_pred HHHHhccCCceeeecccceeeecccccchhHHHHHHhhc---------cCCHHHHHHHHHHHHhccccccc-------cc
Q 003162 539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ---------YLEREEAVEFGRKLASKLFFRHV-------LD 602 (843)
Q Consensus 539 ~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~~---------~~sReEAv~lGQ~LLd~GlI~hV-------~~ 602 (843)
.+++.++++++|+||+|+|++|++||+|+||||||++.. ..+|++|+++||.||++|+|+|| ..
T Consensus 3 ~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~~~~~~k 82 (95)
T cd04446 3 SIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTKVFKKKK 82 (95)
T ss_pred HHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCCeeeccchhccccc
Confidence 467888899999999999999999999999999998741 45999999999999999999999 56
Q ss_pred ccccccC-CceEE
Q 003162 603 ENLFEDG-NHLYR 614 (843)
Q Consensus 603 ~~~F~D~-~~LYR 614 (843)
++.|+|+ ..|||
T Consensus 83 ~~~F~D~~~~lYR 95 (95)
T cd04446 83 RAVFEDSSSSLYR 95 (95)
T ss_pred cccccCCCcCccC
Confidence 7899999 58997
No 19
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.73 E-value=1.2e-17 Score=163.45 Aligned_cols=83 Identities=29% Similarity=0.513 Sum_probs=79.9
Q ss_pred cEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeeccchhHHHH
Q 003162 426 RVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 426 kVVIYTk~------gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~----~TVPqIFInGk~IGG~DeL~el 495 (843)
+|+|||++ +||+|.+||++|++++|+|.++||+.+++.+++|++++|. .|||||||+|++|||++++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 48999999 9999999999999999999999999999999999999875 9999999999999999999999
Q ss_pred HhcCcchHHHHHH
Q 003162 496 DESGKLDEKIEYL 508 (843)
Q Consensus 496 ~esGeL~~lLk~~ 508 (843)
+++|+|.++|+.+
T Consensus 81 ~e~G~L~~lL~~~ 93 (147)
T cd03031 81 NESGELRKLLKGI 93 (147)
T ss_pred HHcCCHHHHHhhc
Confidence 9999999999877
No 20
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=155.26 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=81.2
Q ss_pred CCCcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 421 LVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 421 ~~MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d---~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
+.+..+|+||++++||||.++|.+|...++++..++++.+ .++..+|.+++|++|||+|||+|++|||+++++++|.
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 3555689999999999999999999999999999998754 3667788899999999999999999999999999999
Q ss_pred cCcchHHHHHHHh
Q 003162 498 SGKLDEKIEYLIT 510 (843)
Q Consensus 498 sGeL~~lLk~~~~ 510 (843)
+|+|.++|+.+..
T Consensus 90 ~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 90 SGELVPLLKEAGA 102 (104)
T ss_pred cCCHHHHHHHhhc
Confidence 9999999988643
No 21
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.73 E-value=1.4e-17 Score=141.54 Aligned_cols=74 Identities=30% Similarity=0.574 Sum_probs=70.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCC-CcceEEEcCeeeccchhHHHHHhcC
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSS-AVPKVFFNEILMGGLSELKALDESG 499 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~-TVPqIFInGk~IGG~DeL~el~esG 499 (843)
+|+||++++||+|.+|+++|+++||+|+++||+.+++.++++.+.+|.. +||+|||+|++|||++++++++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4899999999999999999999999999999999888899999988887 9999999999999999999999987
No 22
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.73 E-value=1.2e-17 Score=142.93 Aligned_cols=73 Identities=62% Similarity=1.074 Sum_probs=69.9
Q ss_pred ccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
++|+||++++||+|++|+++|+++||+|+.+||..+++.++++.+++|..+||+|||||++|||+++|.+|++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998763
No 23
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.4e-17 Score=147.14 Aligned_cols=77 Identities=31% Similarity=0.571 Sum_probs=69.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcch
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~--e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (843)
.|+||++++||||.+||++|+++|++|++++++.++ +.++.+++.+|++|||||||||++|||++++.++...|.|+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 499999999999999999999999999999998777 55566666669999999999999999999999999888763
No 24
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=4.1e-17 Score=167.37 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=79.6
Q ss_pred cccEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhc
Q 003162 424 KGRVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (843)
Q Consensus 424 kgkVVIYTk-----~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (843)
..+|+||++ |+||||++++++|+++||+|.++||..+++.+++|++++|++|||||||||++|||++++++++++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~~ 191 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYES 191 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHHc
Confidence 347999998 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHH
Q 003162 499 GKLDEKIEY 507 (843)
Q Consensus 499 GeL~~lLk~ 507 (843)
|+|.++|.+
T Consensus 192 G~L~~~l~~ 200 (204)
T PTZ00062 192 NSLRKVIPD 200 (204)
T ss_pred CChhhhhhh
Confidence 999998843
No 25
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=99.69 E-value=1.5e-17 Score=150.61 Aligned_cols=77 Identities=26% Similarity=0.487 Sum_probs=70.8
Q ss_pred HHHHhccCCceeeecccceeeecccccchhHHHHHHhhc--------cCCHHHHHHHHHHHHhccccccccc---ccccc
Q 003162 539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSEDQ--------YLEREEAVEFGRKLASKLFFRHVLD---ENLFE 607 (843)
Q Consensus 539 ~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~~--------~~sReEAv~lGQ~LLd~GlI~hV~~---~~~F~ 607 (843)
.+++.|++|+++++|+++|++|++||+|+||||||+++. ..+|.+|++++|+|+++++|+||.+ .+.|+
T Consensus 5 ~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hVie~V~g~~~~~~Fe 84 (92)
T cd04447 5 EVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHVIEDIKGRWGKEDLE 84 (92)
T ss_pred HHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCCchhhccccccCccc
Confidence 567777899999999999999999999999999999873 5699999999999999999999964 57899
Q ss_pred cCCceEEe
Q 003162 608 DGNHLYRF 615 (843)
Q Consensus 608 D~~~LYRF 615 (843)
|++.||||
T Consensus 85 D~~~lYRF 92 (92)
T cd04447 85 DNNHLYRF 92 (92)
T ss_pred cccccccC
Confidence 99999998
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.68 E-value=9.2e-17 Score=138.22 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=72.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcc
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLR--YVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKL 501 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~--YeeIDId~d---~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL 501 (843)
|++|+++|||+|.+++.+|.+++++ |+.++|+.+ ...++++.+.+|..++|+||++|++|||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 888888754 45567788889999999999999999999999999999999
Q ss_pred hHHH
Q 003162 502 DEKI 505 (843)
Q Consensus 502 ~~lL 505 (843)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 8875
No 27
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=99.68 E-value=1.6e-17 Score=154.82 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=78.7
Q ss_pred cHHHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhccccccccc---------
Q 003162 533 AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD--------- 602 (843)
Q Consensus 533 ~l~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~--------- 602 (843)
+|.+|+..|++...|+.+.+|+|++++|++||+|+++||||+++ ...+|.||+.+||.||+.|+|+||..
T Consensus 1 ~L~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~~~ 80 (109)
T cd04444 1 SLHRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSG 80 (109)
T ss_pred CHHHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhhhhhcc
Confidence 47899999999999999999999999999999999999999999 56799999999999999999999952
Q ss_pred --ccccccCC-ceEEecCC
Q 003162 603 --ENLFEDGN-HLYRFLDH 618 (843)
Q Consensus 603 --~~~F~D~~-~LYRF~~d 618 (843)
.++|.|++ .||||.+.
T Consensus 81 ~~~~~f~d~s~aly~F~~~ 99 (109)
T cd04444 81 DLAEQFLDDSTALYTFAES 99 (109)
T ss_pred ccccccccCchHHHHhHHH
Confidence 46798875 99999864
No 28
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=99.67 E-value=7e-17 Score=139.09 Aligned_cols=69 Identities=45% Similarity=0.804 Sum_probs=64.6
Q ss_pred CceeeecccceeeecccccchhHHHHHHhh---ccCCHHHHHHHHHHHHhccccccccccc-ccccC-CceEEe
Q 003162 547 NVVVKDRFYKMRRFTNCFLGSEAVNFLSED---QYLEREEAVEFGRKLASKLFFRHVLDEN-LFEDG-NHLYRF 615 (843)
Q Consensus 547 gi~IrDRr~~LrtYrnCF~GsELVDWLie~---~~~sReEAv~lGQ~LLd~GlI~hV~~~~-~F~D~-~~LYRF 615 (843)
|+++++|++++++|++||+|+|+|+||+++ .+.+|+||+.+||.|++.|+|+||...+ .|.|+ ..||||
T Consensus 1 Gv~i~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf 74 (74)
T PF00610_consen 1 GVPIKDRRKRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF 74 (74)
T ss_dssp SSCSEEEECSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred CCccEEEEECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence 789999999999999999999999999985 3889999999999999999999999988 79999 899998
No 29
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.67 E-value=2.4e-16 Score=134.32 Aligned_cols=70 Identities=27% Similarity=0.428 Sum_probs=64.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
+|+||++++||+|.+||++|+++|++|+++||+.++. ..+++..+|..+||+|||||++|||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5999999999999999999999999999999988774 567888899999999999999999999998875
No 30
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.66 E-value=3.2e-16 Score=134.82 Aligned_cols=78 Identities=24% Similarity=0.440 Sum_probs=71.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcch
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d---~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (843)
+|++|+++|||+|.+|+++|.+++++|..++++.+ ...+.++++++|..++|+||++|++|||++++.++.++|+|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 48999999999999999999999999999998755 445678889999999999999999999999999999999997
Q ss_pred H
Q 003162 503 E 503 (843)
Q Consensus 503 ~ 503 (843)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 31
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.65 E-value=5.6e-16 Score=135.24 Aligned_cols=73 Identities=27% Similarity=0.428 Sum_probs=65.5
Q ss_pred CcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 423 MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
.+++|+||+++|||||.+||++|+++||+|+++||+.+.. ..++.+.+|+.+||+|||||++|||++++.+..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 3446999999999999999999999999999999987766 356778899999999999999999999988764
No 32
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-16 Score=145.40 Aligned_cols=83 Identities=17% Similarity=0.344 Sum_probs=77.5
Q ss_pred cEEEEEc-----CCChhHHHHHHHHHhcC-CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcC
Q 003162 426 RVILYTR-----LGCQESREVRLFLYWKR-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESG 499 (843)
Q Consensus 426 kVVIYTk-----~gCP~C~rAK~lL~~lG-I~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esG 499 (843)
+|++|.| |.|+|+.+|.++|..+| ++|..+||..++++|+.+++.++|+|+||+||+|++|||||.+.+|+++|
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~q~G 95 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSG 95 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHHHcc
Confidence 4666654 67999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHH
Q 003162 500 KLDEKIEYL 508 (843)
Q Consensus 500 eL~~lLk~~ 508 (843)
+|+++|++.
T Consensus 96 ELq~~l~~~ 104 (105)
T COG0278 96 ELQTLLKEA 104 (105)
T ss_pred hHHHHHHhc
Confidence 999999763
No 33
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.64 E-value=7.3e-16 Score=135.69 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=67.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeeccchhHHHHHhc
Q 003162 426 RVILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDES 498 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-----lGI~YeeIDId~d~e~rqELke~sG~--~TVPqIFInGk~IGG~DeL~el~es 498 (843)
+|+||+++|||+|.+|+++|++ .|++|+.+||+.++..++++.+.+|+ .+||||||||++|||++++.++++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4999999999999999999999 89999999999887777889888886 8999999999999999999998764
No 34
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.63 E-value=1.1e-15 Score=135.95 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=65.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCC--CCcceEEEcCeeeccchhHHHHHhcC
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFFNEILMGGLSELKALDESG 499 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~--~TVPqIFInGk~IGG~DeL~el~esG 499 (843)
|+||+++|||||.+||++|+++ +++|+++||..+...++++.+.+|+ .+||||||||++|||+++|.++++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 7899999999999999999998 5679999998766557778888887 89999999999999999999998764
No 35
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=99.63 E-value=4.2e-16 Score=135.18 Aligned_cols=72 Identities=36% Similarity=0.730 Sum_probs=68.2
Q ss_pred cCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccc--cccccccCCceEEec
Q 003162 545 KENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVL--DENLFEDGNHLYRFL 616 (843)
Q Consensus 545 ~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~--~~~~F~D~~~LYRF~ 616 (843)
..|+++++|++++++|++||+|.|+|+||+++ .+.+|.+|+.+||.|++.|+|+||. ..+.|.|+..||||.
T Consensus 2 ~~gl~~~~~~~~~~~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~ 76 (77)
T smart00049 2 ETGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFT 76 (77)
T ss_pred CCCcccEEEEECCEECcceeEcHHHHHHHHHcCCcCCHHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeC
Confidence 46889999999999999999999999999999 6689999999999999999999999 789999999999997
No 36
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=99.62 E-value=6.5e-16 Score=139.02 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=73.3
Q ss_pred HHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccc-cccCCceEEe
Q 003162 538 ALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENL-FEDGNHLYRF 615 (843)
Q Consensus 538 a~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~-F~D~~~LYRF 615 (843)
...|++...|+.+++|++++++|++||+|+++|+||+++ .+.+|+||+++|+.|++.|||+||.+.+. |.|++++|||
T Consensus 3 ~~~~~~~~~Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~ 82 (88)
T cd04450 3 VGQMQDSEVGVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDVVDPSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRF 82 (88)
T ss_pred HHHhcCCCCCeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEecCCcccccCCCceEec
Confidence 345777889999999999999999999999999999998 67899999999999999999999998766 8899999999
Q ss_pred c
Q 003162 616 L 616 (843)
Q Consensus 616 ~ 616 (843)
+
T Consensus 83 ~ 83 (88)
T cd04450 83 Q 83 (88)
T ss_pred c
Confidence 9
No 37
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.60 E-value=4.1e-15 Score=122.28 Aligned_cols=72 Identities=28% Similarity=0.532 Sum_probs=68.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
+|+||++++||+|++++.+|.+++++|.++||..+++.++++.+++|..++|+||+||++|||+++++++++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence 489999999999999999999999999999999999889999999999999999999999999999998863
No 38
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.56 E-value=8.3e-15 Score=133.31 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=73.9
Q ss_pred EEEEEcCC------ChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeeccchhHHHHH
Q 003162 427 VILYTRLG------CQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 427 VVIYTk~g------CP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~----~TVPqIFInGk~IGG~DeL~el~ 496 (843)
|+||+++- =..|.+++++|..+||+|+++||+.+++.+++|.+.+|. +||||||||++|||||+++.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 77888763 457999999999999999999999999999999999864 99999999999999999999999
Q ss_pred hcCcchHHHH
Q 003162 497 ESGKLDEKIE 506 (843)
Q Consensus 497 esGeL~~lLk 506 (843)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 39
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=99.56 E-value=4.3e-15 Score=129.34 Aligned_cols=78 Identities=41% Similarity=0.721 Sum_probs=71.4
Q ss_pred HHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhccccccccc-ccccccCCceEE
Q 003162 537 LALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGNHLYR 614 (843)
Q Consensus 537 La~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~-~~~F~D~~~LYR 614 (843)
+...+.++..++.+++|++++++|++||+|+|+|+||+++ ...+|++|+.+||.|++.|||+||.+ .+.|.|++.||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~ 81 (81)
T cd04371 2 LVRIMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR 81 (81)
T ss_pred HHHHhhccCCCCccEEEEECCEECCceeEcHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence 3456677778899999999999999999999999999998 56899999999999999999999999 999999988885
No 40
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.55 E-value=1.4e-14 Score=119.52 Aligned_cols=60 Identities=30% Similarity=0.615 Sum_probs=58.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
|+||++++||+|.+++++|+++|++|+++||+.+++.++++++.+|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999999999999999999999999999999999999999999999999999999986
No 41
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.55 E-value=1.1e-14 Score=162.84 Aligned_cols=82 Identities=20% Similarity=0.361 Sum_probs=71.7
Q ss_pred CcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--------HhCCCCcceEEEcCeeeccchhHHH
Q 003162 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--------FAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 423 MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke--------~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
|+ +|+|||+++||||++||++|+++||+|+++||+.++...+.+.+ .+|.+|||||||||++||||+++++
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 44 69999999999999999999999999999999987764443222 3689999999999999999999987
Q ss_pred HHhcCcchHHHHH
Q 003162 495 LDESGKLDEKIEY 507 (843)
Q Consensus 495 l~esGeL~~lLk~ 507 (843)
++|+|.++|+.
T Consensus 80 --~~g~l~~~~~~ 90 (410)
T PRK12759 80 --RAGEVIARVKG 90 (410)
T ss_pred --HhCCHHHHhcC
Confidence 89999999865
No 42
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=99.53 E-value=7.5e-15 Score=133.93 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhccccccccc---------
Q 003162 533 AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD--------- 602 (843)
Q Consensus 533 ~l~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~--------- 602 (843)
++.+++..|+++..|+..++++...++|++||+|+++||||+.+ .+.+|+||+.+|+.|+++|||+|+..
T Consensus 1 ~L~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL~P~gd~sk~a~~~~ 80 (99)
T cd04445 1 NLSALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYLQPAGDTSKNAADGL 80 (99)
T ss_pred CHHHHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCeeecCccchhHhhcc
Confidence 46789999999999999999999999999999999999999999 67789999999999999999999954
Q ss_pred -ccccccC-CceEEecC
Q 003162 603 -ENLFEDG-NHLYRFLD 617 (843)
Q Consensus 603 -~~~F~D~-~~LYRF~~ 617 (843)
+.+|.|+ ..||+|.+
T Consensus 81 ~~~~fld~~~aly~f~d 97 (99)
T cd04445 81 AENPFLDNPDAFYYFPD 97 (99)
T ss_pred ccccccCCccceeeccc
Confidence 4689876 59999985
No 43
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.43 E-value=3e-13 Score=115.86 Aligned_cols=64 Identities=20% Similarity=0.320 Sum_probs=58.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe-eeccchh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI-LMGGLSE 491 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk-~IGG~De 491 (843)
|+||++++||+|++|+++|.++||+|+++||+.++..+++++. .|..+||+|+++|. +||||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 5799999999999999999999999999999999988888876 49999999999765 9999974
No 44
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.42 E-value=4.4e-13 Score=118.77 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=60.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
+|+||++++||||.+||++|.++||+|+++||+.+++.+++++. .|..+||+|++++..|+||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCH
Confidence 49999999999999999999999999999999999988888876 599999999999999999974
No 45
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.6e-13 Score=139.10 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=77.3
Q ss_pred cEEEEEc-----CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCc
Q 003162 426 RVILYTR-----LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGK 500 (843)
Q Consensus 426 kVVIYTk-----~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGe 500 (843)
+|+||.| |.|++++++..+|+.+|++|..+||..|.++|+-+++++.|+|+|||||+|+++||||.+.+|+++|+
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ge 219 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEKGE 219 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhccc
Confidence 5777776 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHH
Q 003162 501 LDEKIEY 507 (843)
Q Consensus 501 L~~lLk~ 507 (843)
|+..|++
T Consensus 220 L~~~l~~ 226 (227)
T KOG0911|consen 220 LVYTLKE 226 (227)
T ss_pred HHHHhhc
Confidence 9988864
No 46
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.20 E-value=6.5e-11 Score=98.03 Aligned_cols=65 Identities=22% Similarity=0.414 Sum_probs=61.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
|+||+.+|||+|++++.+|..++++|..+|++.++...+++.+..|..+||+++++|+.++|++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 88999999999999999999999999999999888888888889999999999999999999853
No 47
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.11 E-value=2.9e-10 Score=94.15 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=61.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
|++|+.+|||+|.+++.+|...+++|..++++.++...+++.++++..+||+|+++|+.|+|++.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 78999999999999999999999999999999888888889888899999999999999999874
No 48
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5e-10 Score=118.88 Aligned_cols=84 Identities=27% Similarity=0.457 Sum_probs=79.1
Q ss_pred cEEEEEcC------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCC----CCcceEEEcCeeeccchhHHHH
Q 003162 426 RVILYTRL------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGS----SAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 426 kVVIYTk~------gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~----~TVPqIFInGk~IGG~DeL~el 495 (843)
+||||+++ +.-.|..|+.+|+.++|.|.+.||+.+..+++||+++.|. .+.|+|||+|++|||.+++++|
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 79999976 6889999999999999999999999999999999998764 7999999999999999999999
Q ss_pred HhcCcchHHHHHHH
Q 003162 496 DESGKLDEKIEYLI 509 (843)
Q Consensus 496 ~esGeL~~lLk~~~ 509 (843)
++.|+|.++|+.+.
T Consensus 212 nE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 212 NEEGKLGKLLKGIP 225 (281)
T ss_pred hhcchHHHHHhcCC
Confidence 99999999998875
No 49
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.96 E-value=2.4e-09 Score=90.56 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=56.6
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEE-cCeeeccc
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFF-NEILMGGL 489 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s-G~~TVPqIFI-nGk~IGG~ 489 (843)
+|+||+.+|||+|++++.+|.++|++|..+|++.++...+++..++ |..+||+|++ +|..+...
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 4899999999999999999999999999999998888888888887 8999999987 55666543
No 50
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.84 E-value=1.2e-08 Score=94.51 Aligned_cols=80 Identities=19% Similarity=0.374 Sum_probs=64.0
Q ss_pred EEEEEcCCC------hhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC---------CCCcceEEEcCeeeccchh
Q 003162 427 VILYTRLGC------QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG---------SSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 427 VVIYTk~gC------P~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG---------~~TVPqIFInGk~IGG~De 491 (843)
|.||+++.- .+|.++..+|..++|+|+.+||..+++.+++|++..| .+-.||||+|++++|++++
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye~ 82 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYED 82 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHHH
Confidence 888986642 3588999999999999999999999999999998874 3455899999999999999
Q ss_pred HHHHHhcCcchHHHH
Q 003162 492 LKALDESGKLDEKIE 506 (843)
Q Consensus 492 L~el~esGeL~~lLk 506 (843)
+.++.+.|+|.+.|+
T Consensus 83 f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 83 FEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHCTT-HHHHHT
T ss_pred HHHHHhhCHHHHHhC
Confidence 999999999999885
No 51
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=7e-09 Score=86.70 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=50.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IG 487 (843)
+|++|+++|||+|.+++.+|.++ +++|..+|++.+++ +.+..|..++|+|+++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 48999999999999999999876 78999999987654 556688999999999999875
No 52
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=98.78 E-value=5e-09 Score=117.96 Aligned_cols=85 Identities=22% Similarity=0.426 Sum_probs=76.8
Q ss_pred cHHHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh--ccCCHHHHHHHHHHHHhcccccccccccccccCC
Q 003162 533 AIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN 610 (843)
Q Consensus 533 ~l~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~--~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~ 610 (843)
++..+...|+++..|+.||||.|...+.++.|+|+|||+||.+| ...+|.+|..++..||..|||+|+.++..|...
T Consensus 392 d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~yAs~lLk~g~IrHtVnK~TFtEq- 470 (626)
T KOG3571|consen 392 DMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARKYASRLLKAGYIRHTVNKLTFTEQ- 470 (626)
T ss_pred cHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHHHHHHHHHhCchhhcccceeeeee-
Confidence 67777888888899999999999999999999999999999999 678999999999999999999999999999844
Q ss_pred ceEEecCC
Q 003162 611 HLYRFLDH 618 (843)
Q Consensus 611 ~LYRF~~d 618 (843)
.||-|-+.
T Consensus 471 CYYVfGD~ 478 (626)
T KOG3571|consen 471 CYYVFGDE 478 (626)
T ss_pred eEEEeccc
Confidence 46777653
No 53
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.63 E-value=1.4e-07 Score=81.75 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=60.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccchhHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKALDE 497 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~DeL~el~e 497 (843)
++||+.++||+|.+++.+|..+||+|+.++|........++.+.++..+||++.. +|..+.+...+.+..+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6799999999999999999999999999999766555677888889999999987 3577777777666543
No 54
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.56 E-value=1.6e-07 Score=75.71 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=58.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
++|+.++||+|.+++.+|+.+|++|+.++++.......++++.++..++|+++++|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999875443233677888999999999999999888766554
No 55
>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]
Probab=98.55 E-value=6e-08 Score=117.61 Aligned_cols=87 Identities=25% Similarity=0.384 Sum_probs=81.6
Q ss_pred ccHHHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh--ccCCHHHHHHHHHH--HHhcccccccccccccc
Q 003162 532 GAIDELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED--QYLEREEAVEFGRK--LASKLFFRHVLDENLFE 607 (843)
Q Consensus 532 ~~l~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~--~~~sReEAv~lGQ~--LLd~GlI~hV~~~~~F~ 607 (843)
..+..|+.+++.|+. +.++++.||.+.|..||+|+|.|.||+.+ .+.+|++|+.+||+ ++..|+++|+...|.|.
T Consensus 1271 a~lStLtk~lq~m~~-~klq~~~wh~~~~e~CF~gsE~VnWL~n~f~gI~Tre~AikygqK~~e~qlglf~hal~kh~fl 1349 (1701)
T KOG3572|consen 1271 AWLSTLTKLLQLMND-IKLQYQGWHPDPNELCFRGSEWVNWLQNYFAGIETREKAIKYGQKTNEKQLGLFHHALMKHVFL 1349 (1701)
T ss_pred hhHHHHHHHHhccCC-CceeeecccCCcchhhhhhHHHHHHHHHhhhhhhhHHHHHHHHhhhhHHHhhhhhhhhhcceec
Confidence 467889999999987 99999999999999999999999999998 67899999999999 89999999999999999
Q ss_pred cCCceEEecCCC
Q 003162 608 DGNHLYRFLDHD 619 (843)
Q Consensus 608 D~~~LYRF~~dd 619 (843)
||.+||++..+-
T Consensus 1350 dG~YfY~ivpey 1361 (1701)
T KOG3572|consen 1350 DGLYFYYIVPEY 1361 (1701)
T ss_pred cceEEEEecccc
Confidence 999999999863
No 56
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.50 E-value=5.9e-07 Score=77.08 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=55.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc----CeeeccchhHHHHHh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN----EILMGGLSELKALDE 497 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn----Gk~IGG~DeL~el~e 497 (843)
+|+||+.++||+|++++.+|+.+||+|+.++++.. .+.++ +..+..+||+++++ |..+.....+.+..+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch--hHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 48899999999999999999999999999998532 23344 45788999999987 677777766665443
No 57
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.50 E-value=5.6e-07 Score=80.35 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCCcCCCcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeeccchhHHH
Q 003162 416 EPPQPLVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKA 494 (843)
Q Consensus 416 ~~~~~~~MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~e 494 (843)
+.+....+.+.+++|+.+.||+|.+++.+|..+|++|+.++++... ..+++.+.++..+||++.++ |..+.....+.+
T Consensus 8 ~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~ 86 (89)
T cd03055 8 GSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICE 86 (89)
T ss_pred CCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHH
Confidence 4444556777899999999999999999999999999999987433 23567788889999999998 787777666555
Q ss_pred H
Q 003162 495 L 495 (843)
Q Consensus 495 l 495 (843)
.
T Consensus 87 y 87 (89)
T cd03055 87 Y 87 (89)
T ss_pred h
Confidence 4
No 58
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.45 E-value=6.6e-07 Score=75.75 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=56.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeeccchhHHHHHh
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE 497 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~el~e 497 (843)
++|+.++||||.+++.+|..+|++|+.+.++..+. ....+.++..+||+++++ |..+++...+.+...
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~--~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE--ATPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch--HHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 48999999999999999999999999999875432 223456788999999997 899999988877653
No 59
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=98.39 E-value=3.3e-07 Score=82.74 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=64.8
Q ss_pred HHHHHHhccCCceeeecccce-eeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhccccccccc-ccccccCC-ce
Q 003162 537 LALIVLKMKENVVVKDRFYKM-RRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLD-ENLFEDGN-HL 612 (843)
Q Consensus 537 La~lm~~~~~gi~IrDRr~~L-rtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~-~~~F~D~~-~L 612 (843)
|-+++.+|-..+++.+|+.-+ -+|.+||+|+++|+||+++ ...++..|-.+||.|++.|||+.|.. ...|.++. .+
T Consensus 2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~~s~~~aE~fGQdLv~~gfir~~g~vG~~F~nSs~~~ 81 (84)
T cd04436 2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENMPEKDLDAAEAFGQDLLNQGFLRLVGGVGSTFVNSSKFQ 81 (84)
T ss_pred HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCchHHHhcccCcceecCccce
Confidence 456777777888888877654 5899999999999999999 57899999999999999999999985 56677664 45
Q ss_pred EE
Q 003162 613 YR 614 (843)
Q Consensus 613 YR 614 (843)
|.
T Consensus 82 Yq 83 (84)
T cd04436 82 YQ 83 (84)
T ss_pred ec
Confidence 53
No 60
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.28 E-value=8.8e-07 Score=82.87 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=43.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSA 475 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~T 475 (843)
|+||+.++||+|++|+++|.++|++|+++|+..++..+.+|.++.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~ 49 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG 49 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence 5799999999999999999999999999999988887888877655444
No 61
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.23 E-value=3.9e-06 Score=70.69 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=56.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
+++|+.++||+|.+++.+|..+|++|+.++++... ...++++.+...+||++..+|..+.....+.+..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 36999999999999999999999999999887432 2356777888899999988887777766665554
No 62
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.21 E-value=4.4e-06 Score=71.02 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=54.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc-CeeeccchhHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKA 494 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~e 494 (843)
++|+.++||+|.+++.+|..+|++|+.++++... ...++.+.++..+||++..+ |..+.....+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 6899999999999999999999999999987532 23577888899999999996 777765554443
No 63
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.21 E-value=1.6e-06 Score=79.61 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=43.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSA 475 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~T 475 (843)
|+||++++||+|++|+++|+++|++|+++||..++...++|.++.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999999999988887888888765433
No 64
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.16 E-value=4.7e-06 Score=69.79 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=53.5
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE-cCeeeccchhHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKA 494 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFI-nGk~IGG~DeL~e 494 (843)
++|+.++||+|.+++.+|..+|++|+.+.++.. .....++.+.++..+||++.+ +|..+.....+.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence 699999999999999999999999999888642 233457888889999999997 5566655554443
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.15 E-value=7.8e-06 Score=70.07 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=46.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe-eecc
Q 003162 426 RVILYTRLGCQESREVRLFLYW----KR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI-LMGG 488 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----lG--I~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk-~IGG 488 (843)
.|++|+.+|||+|..++..|.+ .+ +++..+|++.+++ +.+..|..++|+++++|+ .+-|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~vPt~~~~g~~~~~G 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGIMAVPAIVINGDVEFIG 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCCccCCEEEECCEEEEec
Confidence 4899999999999999999864 33 6677888876664 334578899999999997 3334
No 66
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.12 E-value=7.9e-06 Score=69.18 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
+++|+.++||+|++++.+|+.+|++|+.+.++. .....+++.+.+...+||.+..+|..+.....+...
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 369999999999999999999999999998873 333457788888899999999888776665555443
No 67
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.06 E-value=1.1e-05 Score=69.44 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=59.3
Q ss_pred EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 429 IYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
+|+.++||||.+++-+|+.+||+|+.++++.... ..++.+.++..+||++..+|..+.+...+.+..+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 6999999999999999999999999999974433 6778888999999999999999998877766554
No 68
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.03 E-value=1.7e-05 Score=66.61 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=56.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
+++|+.+.||+|.+++.+|..+|++|+.++|+. ......++.+.+...++|++..+|..+.....+.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 368999999999999999999999999999873 23345677788888999999999988776655544
No 69
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.01 E-value=3.1e-05 Score=68.53 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=44.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcC
Q 003162 426 RVILYTRLGCQESREVRLFLYWK----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNE 483 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInG 483 (843)
+|++||+++|+.|..|+.+|... ++.++.+||+.+++ +.+.+|. .+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence 48999999999999999999964 56799999997776 5556774 899999999
No 70
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.99 E-value=9.9e-06 Score=78.22 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++||+|++|+++|+++||+|+++||..++..+++|..+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 789999999999999999999999999999998888888887754
No 71
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.90 E-value=2.3e-05 Score=70.89 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=49.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IG 487 (843)
.|.+|+.+|||+|..+++++... ++.|..+|++..++ +.+.+|...+|.+++||+.++
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECCEEEE
Confidence 58899999999999999998775 78999999987654 445678899999999998764
No 72
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.87 E-value=3.4e-05 Score=67.38 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=43.4
Q ss_pred EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rA----K~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
|.+|+ +|||+|+.+ ++++.++|+++..++|+...+ . ...|..++|+|++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a-~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----I-LEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----H-HHcCCCcCCEEEECCEEE
Confidence 77887 999999999 667788899999999973222 2 236899999999999665
No 73
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.86 E-value=2.4e-05 Score=73.64 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++||+|++|+++|+++|++|+.+|+..++..+.++.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 579999999999999999999999999999998888777776654
No 74
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.84 E-value=2.8e-05 Score=73.09 Aligned_cols=45 Identities=27% Similarity=0.418 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|++|++|+++|.++||+|+.+|+..++..+.+|.+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 789999999999999999999999999999988877777777654
No 75
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.76 E-value=4.1e-05 Score=74.20 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|++|++|+++|.++||+|+.+|+..++...++|..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 789999999999999999999999999999998887777777754
No 76
>PHA02125 thioredoxin-like protein
Probab=97.75 E-value=8.8e-05 Score=64.36 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
|++|+.+||++|+.++.+|++.. |..++|+.+.. .++.+..+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--~~~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--YTYVDVDTDEG--VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--heEEeeeCCCC--HHHHHHcCCceeCeEE-CCEEE
Confidence 88999999999999999998754 44455543332 3566778899999987 66544
No 77
>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins. Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.
Probab=97.72 E-value=3.9e-05 Score=68.81 Aligned_cols=77 Identities=25% Similarity=0.452 Sum_probs=67.7
Q ss_pred HHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCC-ceEEe
Q 003162 539 LIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN-HLYRF 615 (843)
Q Consensus 539 ~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~-~LYRF 615 (843)
.++..++..++..+|....-.|++.|+|.++|+-|..- ...+|.=|+.+|+.|-.+.++|.|+-+|.++|+. -.|+|
T Consensus 4 ~VA~~fr~~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~t~DRnlALllgRsLdaQkfFhdV~y~hrLrDs~~evY~F 82 (82)
T cd04435 4 RVALQLRDKIPLGDHTKDGITYRNSFTGKDAVTTIQGIIRTSDRNLALLLGRSLDAQKFFHDVTYDHRLRDSVDEVYRF 82 (82)
T ss_pred HHHHHHHHhccccccccCCeecCcccCcHHHHHHHHHHHhcccHHHHHHHHHHHHHhHhhhhcccCCccccChhhhhcC
Confidence 45556677788899999999999999999999999887 6678999999999999999999999999999984 67776
No 78
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.70 E-value=5.7e-05 Score=73.28 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|++|++|+++|+++||+|+++|+..++...++|..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l 46 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL 46 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence 789999999999999999999999999999988877677776654
No 79
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.65 E-value=6.4e-05 Score=70.15 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.|+|+.|++|+++|.++|++|+++|+..+|--.++|..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 579999999999999999999999999999988877677777654
No 80
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.64 E-value=0.00018 Score=61.18 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 434 GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 434 gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
.||+|.+++.+|+.+|++|+.++++... .+...+||++..+|+.+.++..+.+..+
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 7999999999999999999999997532 5567899999999999999887776554
No 81
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.55 E-value=0.00035 Score=59.57 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=57.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
+++|+.+.||+|.+++-+|..+|++|+.+.++.. .....++.+.+...+||++..+|..+.....+.+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 6799999999999999999999999999888643 223456778888999999999888777766666554
No 82
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.53 E-value=0.00031 Score=59.91 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC-CCCcceEEEcCeeeccchhHHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG-SSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG-~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
.+|+.+.||+|.+++.+|..+|++|+.++++.. ....++.+... ..+||.+..+|..+.....+.+..
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 589999999999999999999999999887643 22345566666 489999998887777666655543
No 83
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.52 E-value=0.00014 Score=68.98 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=40.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.|.|+.|++|+++|+++|++|+++|+..++--.+++..+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 789999999999999999999999999999988776677777754
No 84
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.52 E-value=0.00027 Score=61.20 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
+++|..++||+|.+++-+|+.+|++|+.+.++.. .....++.+++...+||++..+|..+.....+...
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 4689999999999999999999999999988642 22345788899999999999988877766655543
No 85
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.36 E-value=0.00059 Score=59.57 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=40.7
Q ss_pred EEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 427 VILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL----~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
|.+ ..++||+|..+.+++ ...|++++.+++.. .+++ ..+|..++|.++|||+.+
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~----~~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED----FEEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT----HHHH-HHTT-SSSSEEEETTEEE
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC----HHHH-HHcCCCCCCEEEECCEEE
Confidence 777 467799999777655 55799998888833 3344 668999999999999753
No 86
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.32 E-value=0.00061 Score=57.85 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=52.5
Q ss_pred EEEEcCCChhHHHHHHHHHh--cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYW--KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~--lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI-nGk~IGG~DeL~el 495 (843)
++|+.+.||+|.+++.+|.. +|++|+.+.++.. ....++.+.....+||++.. +|..+.....+.+.
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 58999999999999999999 8999999998632 12345667788899999986 67777666555443
No 87
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.30 E-value=0.00069 Score=56.94 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=54.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
++|+.+.|++|.+++.+|..+|++|+.+.++.. .....++.+.+...+||++..+|..+.....+.+.
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 589999999999999999999999999888642 22345677888899999999998877666555443
No 88
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.30 E-value=0.00063 Score=63.64 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=41.6
Q ss_pred EEEE-EcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILY-TRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIY-Tk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
|++| +.+|||+|+.++.+|.+. .+.|..+|++.++ ++.+.+|..++|++++
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~i 81 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEEE
Confidence 5555 789999999999999765 3678889988765 4666789999999999
No 89
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.22 E-value=0.001 Score=50.68 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=46.4
Q ss_pred EEEEEcCCChhHHHHHHHHH-----hcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 003162 427 VILYTRLGCQESREVRLFLY-----WKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~-----~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk 484 (843)
|++|..++|++|.+++..|. ..++.|..++++........ ....+..++|++++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEeC
Confidence 46889999999999999999 67899999999877664443 23467789999999774
No 90
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.17 E-value=0.0014 Score=56.48 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=52.3
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 427 VILYTRL-------GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 427 VVIYTk~-------gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
+++|..+ .||+|.+++.+|+.+|++|+.+.++. .+.+...+||++..+|+.+.+...+.+...
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 5788887 46999999999999999999988863 245678999999999999988877766543
No 91
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.16 E-value=0.0011 Score=56.28 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=54.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
++|..+.|+.|.+++.+|..+|++|+.+.++.......++...+...++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 68999999999999999999999999998864322223356677889999999998887776665554
No 92
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.15 E-value=0.0016 Score=55.99 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=56.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
+++|..+.|+.|.+++.+|..+|++|+.+.++. .....++...+...+||++..+|..+.....+....
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 578999999999999999999999999998864 223345667778899999999998888777666654
No 93
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.12 E-value=0.0011 Score=63.26 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=43.7
Q ss_pred EEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCCh--h-----HHHHHHHHh----CCCCcceEEE--cCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYP--S-----RKMELEKFA----GSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~----~lGI~YeeIDId~d~--e-----~rqELke~s----G~~TVPqIFI--nGk~IGG~ 489 (843)
|+.|+++|||+|+.+.-.|. +.++++-.+|++.++ + ...++.+.. +...+|++++ +|+.++..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR 106 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence 78899999999999766664 456889999998553 1 122344443 3455998876 88776554
No 94
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00089 Score=62.56 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=67.4
Q ss_pred EEEEEcCCChhH------HHHHHHHHhcCCceEEEEcCCChhHHHHHHH--------HhCCCCcceEEEcCeeeccchhH
Q 003162 427 VILYTRLGCQES------REVRLFLYWKRLRYVEINIDVYPSRKMELEK--------FAGSSAVPKVFFNEILMGGLSEL 492 (843)
Q Consensus 427 VVIYTk~gCP~C------~rAK~lL~~lGI~YeeIDId~d~e~rqELke--------~sG~~TVPqIFInGk~IGG~DeL 492 (843)
|.+|+++.-+.- .++..+|+...|.|.++||..+.+.++++.+ ..|.+.-||||-++++.|+++.+
T Consensus 4 irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F 83 (108)
T KOG4023|consen 4 IRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELF 83 (108)
T ss_pred eEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHH
Confidence 778887765543 4788899999999999999988777776643 45889999999999999999999
Q ss_pred HHHHhcCcchHHHH
Q 003162 493 KALDESGKLDEKIE 506 (843)
Q Consensus 493 ~el~esGeL~~lLk 506 (843)
.+..+++.|++.|+
T Consensus 84 ~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 84 FEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998884
No 95
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00088 Score=64.15 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=40.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||..|.|.-|++|+++|+++||+|+.+|+...+--+++|.++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 899999999999999999999999999999988777777777654
No 96
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.06 E-value=0.0014 Score=67.12 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=53.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeeccchhHHHHHh
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKALDE 497 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIF-InGk~IGG~DeL~el~e 497 (843)
++|+...||+|.+++-+|..+|++|+.+++...... ...+.++..+||++. .||..+++...+.+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 379999999999999999999999999988644321 225667789999998 78888877766555443
No 97
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.06 E-value=0.0021 Score=55.81 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=54.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEc---CeeeccchhHHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFN---EILMGGLSELKALD 496 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~~TVPqIFIn---Gk~IGG~DeL~el~ 496 (843)
+++|+.++ |+|.+++.+|..+|++|+.+.++. .....+++.+.+...+||.+..+ |..+.....+.+..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 67999886 999999999999999999888763 23445678888889999999887 67666665555543
No 98
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.05 E-value=0.0013 Score=67.89 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=45.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~ 485 (843)
.|++|+.+|||+|..++.+|+.. .|.+..+|++.+++ +.+.+|..++|+++|++..
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~~ 196 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKGV 196 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecCC
Confidence 47789999999999999999864 46677788877655 4456789999999998643
No 99
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.05 E-value=0.0017 Score=58.73 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=42.7
Q ss_pred EEEEEcCCChhHHHHHHHH------Hh---cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc
Q 003162 427 VILYTRLGCQESREVRLFL------YW---KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN 482 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL------~~---lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn 482 (843)
++.|+.+||++|++....+ .+ .++.+..+|++.+.....++....+..++|++++=
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 7789999999999887543 11 16778888887665555677778899999988773
No 100
>PRK10387 glutaredoxin 2; Provisional
Probab=97.03 E-value=0.0018 Score=65.11 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=50.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE-EcCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF-FNEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIF-InGk~IGG~DeL~el 495 (843)
+++|+.+.||+|.+++-+|..+||+|+.++++.... ... .+.++..+||++. .+|..+.....+...
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~y 68 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE-ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHY 68 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch-hhH-HHhcCCcccceEEecCCeEecCHHHHHHH
Confidence 358999999999999999999999999999864332 222 3566788999994 577777665544443
No 101
>PRK10026 arsenate reductase; Provisional
Probab=97.01 E-value=0.0012 Score=65.31 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=40.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
.|+||+.++|.-|++|++||+++|++|+++|+-.++--.++|..+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 5999999999999999999999999999999987776677776654
No 102
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.97 E-value=0.0032 Score=53.07 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=45.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-----lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
+++|+.+||++|..+...|.+ .++.|..+|++..+.. ....+...+|++++ +|+.+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPEL----AEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhH----HHhcCcccccEEEEEECCEEE
Confidence 888999999999999999988 7888999999875543 34457788999877 77644
No 103
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.95 E-value=0.0025 Score=58.59 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
..||||++++-+|..+||+|+.++|+.... -+++.+++....||++..+|..+.....+.+..
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 469999999999999999999988863321 256788888899999999998887776665554
No 104
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.91 E-value=0.0035 Score=53.75 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
+++|..+.|+.|++++.+|..+|++|+.+.++.. .....++.+.+...+||++..+|..+....-+...
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999888632 22335677788899999999888766655554444
No 105
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.88 E-value=0.0016 Score=57.12 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=49.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEc-CeeeccchhHHHHHh
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFN-EILMGGLSELKALDE 497 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~el~e 497 (843)
++||+|.+++.+|..+|++|+.+.++.. .....++ +..+..+||++..+ |..+.+...+.+...
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 6799999999999999999998887632 2223344 55678999999988 888887777666543
No 106
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.86 E-value=0.0014 Score=61.83 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=39.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|+-|++|+.+|+++|++|+++|+...|--..++..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 579999999999999999999999999999987776666666654
No 107
>PRK10853 putative reductase; Provisional
Probab=96.83 E-value=0.00088 Score=63.99 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|.-|++|+++|+++|++|+.+|+-.+|--.++|....
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 789999999999999999999999999999987776677777654
No 108
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.82 E-value=0.0018 Score=60.96 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=38.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+||+.++|.-|++|+++|+++|++|+++|+...+--..++..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 579999999999999999999999999999987765566665543
No 109
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=96.82 E-value=0.0037 Score=53.77 Aligned_cols=68 Identities=15% Similarity=0.034 Sum_probs=53.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEc-CeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~-e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~el 495 (843)
++|+.+.||+|.+++-+|..+|++|+.+.++... ....++++++...++|++..+ |..+....-+.+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 4899999999999999999999999999887532 233567888889999999985 7666555444443
No 110
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=96.76 E-value=0.0037 Score=63.64 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=50.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
+++|+.++||+|.+++-+|..+|++|+.+.|+.. ....++.+++...+||++..+|..+
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l 69 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTL 69 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEe
Confidence 6799999999999999999999999999999743 2235778888899999998877544
No 111
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.72 E-value=0.0059 Score=59.53 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE---cCeeeccchhHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF---NEILMGGLSELKALDE 497 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI---nGk~IGG~DeL~el~e 497 (843)
|+.|..+||++|+.....|.++ .+.|..++++... ...+....+...+|++++ +|+.++-+.-. ..
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~---~~ 98 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL---QP 98 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC---CC
Confidence 7788999999999888877643 3567778886532 134456678899998775 46655322211 11
Q ss_pred cCcchHHHHHHHhcCCCCCC
Q 003162 498 SGKLDEKIEYLITEAPPFEA 517 (843)
Q Consensus 498 sGeL~~lLk~~~~~ap~~Da 517 (843)
..+|..+|+.+..+.+++.+
T Consensus 99 ~~~l~~~l~~l~~~~~~~~~ 118 (142)
T cd02950 99 KQVLAQNLDALVAGEPLPYA 118 (142)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 12466777777777665543
No 112
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.72 E-value=0.0042 Score=55.77 Aligned_cols=56 Identities=30% Similarity=0.509 Sum_probs=44.5
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
+++|+.+||+.|+.++..|.+ .++.|..+|++.+++ +....+..++|.+++ +|+.+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCeeccEEEEEECCeEE
Confidence 778999999999999999876 357788899887665 445567889998877 66655
No 113
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.72 E-value=0.0026 Score=61.62 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=41.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhC
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAG 472 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG 472 (843)
.|+||+.|+|.-|++|+++|+++||+|+.+|+-.++--.++|.....
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 47899999999999999999999999999999877766777777543
No 114
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=96.64 E-value=0.003 Score=54.17 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCC--Chh-HHHHHHHHhCCCCcceEEE-cCeeeccchhHHHHHh
Q 003162 434 GCQESREVRLFLYWKRLRYVEINIDV--YPS-RKMELEKFAGSSAVPKVFF-NEILMGGLSELKALDE 497 (843)
Q Consensus 434 gCP~C~rAK~lL~~lGI~YeeIDId~--d~e-~rqELke~sG~~TVPqIFI-nGk~IGG~DeL~el~e 497 (843)
.||||.++.-+|..+|++|+..-+.. .+. ...++.++++..+||.+.. +|+.+.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 49999999999999999999877632 222 2257888999999999998 7898888777776654
No 115
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.52 E-value=0.0037 Score=72.39 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=46.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeec
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMG 487 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IG 487 (843)
.|.+|.+++||||..|+++++.. .|..+-+|....|+ +.+.++..+||++||||+.+.
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence 58899999999999999999765 55666776666555 445678889999999997663
No 116
>PHA02278 thioredoxin-like protein
Probab=96.49 E-value=0.0088 Score=55.72 Aligned_cols=60 Identities=12% Similarity=0.194 Sum_probs=44.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
|+-|+.+||+.|+.+...|.+. .+++..+||+.++.-..++.+..+..++|++.+ +|+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 7788899999999998877553 356888899865422344666778888998766 77765
No 117
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.49 E-value=0.0098 Score=50.72 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=53.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
++|..++.|+|.+++-+|..+|++|+.++++.. ....+++.+.+...+||.+..+|..+.....+.+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 589999999999999999999999999887632 2334677788889999999988877665544433
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.49 E-value=0.004 Score=72.20 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=46.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG 488 (843)
.|.+|.+++||||..|+++++.. +|..+-+|....++ +.+.++..+||++||||+.++.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~~ 183 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFHN 183 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEEe
Confidence 58899999999999999999775 45555666555554 4566788899999999976643
No 119
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.44 E-value=0.01 Score=56.75 Aligned_cols=57 Identities=21% Similarity=0.153 Sum_probs=45.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----G-I~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IG 487 (843)
|+-|+.+|||.|+.+...|.++ + +.|..+|++..++ +....|..++|++++ +|+.++
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence 6779999999999999888653 3 5688999988765 555678889998766 777663
No 120
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=96.44 E-value=0.0092 Score=51.18 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=51.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh--hHHHHHHHHhCCCCcceEEEc-CeeeccchhHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP--SRKMELEKFAGSSAVPKVFFN-EILMGGLSELKAL 495 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~--e~rqELke~sG~~TVPqIFIn-Gk~IGG~DeL~el 495 (843)
++|+.++|+ |.+++.+|..+|++|+.+.++... ....++.+.+...+||++..+ |..+.....+.+.
T Consensus 2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 589888774 889999999999999988876432 334677888899999999987 6666655555444
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.32 E-value=0.006 Score=71.49 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=46.9
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCee
Q 003162 426 RVILYTRLGCQESREVRLFLYW----K-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEIL 485 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----l-GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~ 485 (843)
.|.+|..++||||.++.++++. . +|.++.+|+...++ +.+.++..+||.++|||+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhCCceecCEEEECCEE
Confidence 5889999999999998887765 3 79999999987655 5556799999999999964
No 122
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.27 E-value=0.017 Score=53.53 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=47.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~DeL~el 495 (843)
|+.|..+||+.|+.....|.++ ++.|..+|++.. .+.+..+..++|++.+ +|+.++....+..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence 6779999999999998888753 577788888654 5566678889997755 88887665544444
No 123
>PTZ00051 thioredoxin; Provisional
Probab=96.16 E-value=0.018 Score=51.09 Aligned_cols=59 Identities=12% Similarity=0.291 Sum_probs=43.7
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-----lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~ 489 (843)
++.|+.+||+.|+.....|.+ .++.|..+|++..+. +.+..+..++|++.+ +|+.++.+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~ 87 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENITSMPTFKVFKNGSVVDTL 87 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCceeeEEEEEeCCeEEEEE
Confidence 778899999999999888876 367788888875443 455567788887665 66555433
No 124
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.15 E-value=0.024 Score=51.84 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=45.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
-|+-|+.+||+.|+.....|.++ ++.|..+|++.++. ..++.+..+...+|++++ +|+.+
T Consensus 18 vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~-~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS-TMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH-HHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 37788999999999988888763 67788888877653 235666678889997666 77655
No 125
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.06 E-value=0.018 Score=48.83 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=53.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
++|+.+. +.|.+++-+|..+|++|+.+.++.. .....++.+.+...+||.+..+|..+.....+.+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4788776 6799999999999999999888642 233456777888899999999998887777666654
No 126
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.05 E-value=0.016 Score=54.43 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-----lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~ 489 (843)
|+.|+.+||+.|+.+...|.+ .++.|..+|++..++ +.+..+..++|++.+ +|+.++-.
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEEE
Confidence 778889999999999988866 268899999987665 445667788888755 88766544
No 127
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.01 E-value=0.024 Score=51.53 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=40.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh----------------HHHHHHHHhCCCCcceEE
Q 003162 426 RVILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS----------------RKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-------l--GI~YeeIDId~d~e----------------~rqELke~sG~~TVPqIF 480 (843)
.|++|+.+|||||++....+.. . ++.+..++++.... ...++....|...+|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 5889999999999988776653 1 35556666654332 123566667999999998
Q ss_pred Ec---Ce---eeccch
Q 003162 481 FN---EI---LMGGLS 490 (843)
Q Consensus 481 In---Gk---~IGG~D 490 (843)
+- |+ .+-|+-
T Consensus 88 ~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYL 103 (112)
T ss_dssp ECTTTSCEEEEEESS-
T ss_pred EEcCCCCEEEEecCCC
Confidence 83 56 344553
No 128
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.96 E-value=0.024 Score=60.27 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
+.||+|++++-+|..+|++|+.+.|+.... .+++.+++...+||++..+|..+.....
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~a 74 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNK 74 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHH
Confidence 469999999999999999999988874322 3678888888999999888776655433
No 129
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.018 Score=51.83 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=47.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHH-----------HHhCCCCcceEEEcC-eeecc
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELE-----------KFAGSSAVPKVFFNE-ILMGG 488 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~-e~rqELk-----------e~sG~~TVPqIFInG-k~IGG 488 (843)
-++|....||.|..++++|++++|.|++++|.... ..++.|+ +..|...+|.+.+++ +.|-|
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 47999999999999999999999999999997543 2222221 223778999998854 55544
No 130
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.95 E-value=0.015 Score=54.41 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=39.0
Q ss_pred cEEEEEcCCChhHHHHHHHHH---------hcCCceEEEEcCCChhH---------HHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLY---------WKRLRYVEINIDVYPSR---------KMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~---------~lGI~YeeIDId~d~e~---------rqELke~sG~~TVPqIFI 481 (843)
-++.|+.+||++|++....+. ..++.+..+|++.+... ...+....+..++|++++
T Consensus 17 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~ 90 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIF 90 (125)
T ss_pred EEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEE
Confidence 378899999999998875442 12566677777654321 245666778899999655
No 131
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.94 E-value=0.035 Score=48.52 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=43.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IG 487 (843)
++.|..+||++|+.+...|.+. .+.|..+|++.++. +.+..|..++|++++ +|+.+.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEee
Confidence 7788899999999988777652 47788888876654 445568899999887 766543
No 132
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.92 E-value=0.032 Score=49.09 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=44.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeec
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMG 487 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IG 487 (843)
-|+.|..+||++|+..+..|.+. ++.|..+|++..+ .+.+..+...+|++++ +|+.+.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccc----hhhhccCCCCCCEEEEEECCcEEE
Confidence 48889999999999999888552 5778888887653 3556778899999877 665543
No 133
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.86 E-value=0.031 Score=48.23 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=51.1
Q ss_pred cCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCeeeccchhHHHH
Q 003162 432 RLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 432 k~gCP~C~rAK~lL~~lGI~YeeIDId~d~-e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
...|++|.+++-+|+.+|++|+.+.++... ....++.+.+...++|.+..+|..+.....+.+.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 467999999999999999999998886432 2345777888899999999998877766655543
No 134
>PRK15113 glutathione S-transferase; Provisional
Probab=95.84 E-value=0.027 Score=57.55 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=50.0
Q ss_pred cEEEEEcC--CChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 426 RVILYTRL--GCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 426 kVVIYTk~--gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
.+++|+.+ .||+|.+++-+|..+||+|+.+.++. ......++.+++....||++..+|..|
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l 69 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFEL 69 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEE
Confidence 37899976 79999999999999999999988863 223346788888899999999877544
No 135
>PRK09381 trxA thioredoxin; Provisional
Probab=95.83 E-value=0.035 Score=50.53 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=44.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 003162 426 RVILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~ 489 (843)
-|+.|..+|||.|+.....|.+ .++.+..+|++..+.. ....+..++|++++ +|+.++-+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCCcCCEEEEEeCCeEEEEe
Confidence 3778889999999999877764 2466788888776653 34568899998866 88766533
No 136
>PLN02473 glutathione S-transferase
Probab=95.80 E-value=0.025 Score=57.27 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=53.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
+++|+.+.||+|.+++-+|..+||+|+.+.++.. +....++..++...+||++..+|..|....-+..
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~ 72 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIAR 72 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHH
Confidence 5799999999999999999999999998877532 2334456667888999999988877766544433
No 137
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.63 E-value=0.043 Score=48.43 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=40.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
++.|..+||+.|+++...|.+. .+.+..+|++..++ +.+..+..++|++++ +|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCccccEEEEEECCEEE
Confidence 6788999999999998888752 45566666655443 555678888997655 66544
No 138
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=95.60 E-value=0.033 Score=50.05 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=40.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk 484 (843)
-++.|..+||++|+.....|.+. .+.+..+|++.++. +.+..+..++|++++ +|+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCC
Confidence 37789999999999988887553 35577888876654 444567889999855 554
No 139
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.58 E-value=0.022 Score=53.07 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=30.4
Q ss_pred EEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh
Q 003162 430 YTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA 471 (843)
Q Consensus 430 YTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s 471 (843)
|+.+.|.-|++|+++|+++|++|+.+|+...|--++++.++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 889999999999999999999999999988766666665543
No 140
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.57 E-value=0.037 Score=49.58 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=40.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.....|.+. ++.+..+|++.++. +....+..++|++++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYH 77 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEE
Confidence 38889999999999988777543 46677888876654 445567889999987
No 141
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.046 Score=58.28 Aligned_cols=64 Identities=20% Similarity=0.101 Sum_probs=52.8
Q ss_pred ccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHh-CCCCcceEEEcCeeeccc
Q 003162 425 GRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFA-GSSAVPKVFFNEILMGGL 489 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~s-G~~TVPqIFInGk~IGG~ 489 (843)
+.|.||+.--|||.+||+-+|+.+||+|+.++++... .-+.|.+.+ -...||++.-||+.|+-.
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ES 72 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICES 72 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhh
Confidence 5699999999999999999999999999999987532 234566666 568999999999986543
No 142
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.42 E-value=0.02 Score=54.20 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=39.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCC--CCcceEEE---cCeeec
Q 003162 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGS--SAVPKVFF---NEILMG 487 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~------lGI~YeeIDId~d~e~rqELke~sG~--~TVPqIFI---nGk~IG 487 (843)
++.|+.+||++|+.....+.+ ....|..++++.+++.... ..+. +.+|++++ +|+.++
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccceEEEECCCCCCch
Confidence 677889999999999887766 3456888999866532221 2222 24898776 555544
No 143
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.41 E-value=0.045 Score=49.93 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=40.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 003162 427 VILYTRLGCQESREVRLFLYWK------------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk 484 (843)
++.|..+||++|++....|.+. .+.|-.+|.+.++. +....|..++|++++ +|+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEEEEEeCCc
Confidence 7789999999999998877532 36677788876543 556678999998865 554
No 144
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.41 E-value=0.051 Score=46.86 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----l----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-+++|+.+||++|+.+...|.. . ++.+..+|.+.++ .+.+..+...+|++++
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL 77 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence 4889999999999998887754 2 4556666665533 4556678899998866
No 145
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.39 E-value=0.049 Score=49.67 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=39.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~ 485 (843)
-|+.|+.+||++|+.....|... .+.|..+|++ .+ ++.+..+...+|++++ +|+.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEE
Confidence 37889999999999888877542 2456777776 33 3456678889997655 6654
No 146
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=95.33 E-value=0.049 Score=49.04 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=39.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||+.|++....+.+. ++.+..+|++..++ +.+..|...+|++++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEE
Confidence 37789999999999887777542 46677888876554 445568889998766
No 147
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.31 E-value=0.041 Score=56.89 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=42.8
Q ss_pred cEEEEEc---CCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 426 RVILYTR---LGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk---~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
.|++|+. +|||+|+.+..+|.+. ++.+..++++.+.. .++.+..+..++|++.+ +|+.+
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCCccCEEEEEeCCeee
Confidence 4778888 9999999999998765 35556677764322 34666778999999887 55444
No 148
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=95.22 E-value=0.043 Score=59.89 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=51.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
++++|--.+||||-+++.+|+=+||+|..++| +|-.+++++ .+...-||.+.+.|+-.-...-
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsv 152 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSV 152 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHH
Confidence 59999999999999999999999999999998 455666653 4577889999998875444433
No 149
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.20 E-value=0.057 Score=47.80 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
++.|..+||+.|+.....|.+. .+.+..+|++..+. +.+..+..++|++++ +|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCCCCCEEEEEeCCEEe
Confidence 7788899999999998887652 34566777776554 455668889999885 66544
No 150
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.19 E-value=0.049 Score=49.10 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=39.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|++....|.+. .+.+..+|++.+.. ..+....+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN--KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc--HHHHHHcCCCcCCEEEE
Confidence 38889999999999887776553 35566777765322 33555678899998876
No 151
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.12 E-value=0.055 Score=50.25 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=41.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
-++.|..+||+.|+.....|.+ .++.+..+|++..+. +....|..++|++++ +|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEE
Confidence 4778999999999877766533 257778888876554 445568899998774 66654
No 152
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=94.97 E-value=0.067 Score=49.02 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId-~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.....|.++ ++.+..+|.+ ..+ .+....+...+|++++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence 37889999999999988777653 5666677765 333 4556678889998765
No 153
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=94.95 E-value=0.061 Score=53.73 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=43.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHh--CCCCcceEE--EcCeeecc
Q 003162 427 VILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFA--GSSAVPKVF--FNEILMGG 488 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId~d~e~rqELke~s--G~~TVPqIF--InGk~IGG 488 (843)
|+.|..+|||.|+.....|.+. ++.+..+|++..++..+.+.-.+ +.+++|++. .+|+.++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 8889999999999988777542 47888999988877554442111 223488764 47776643
No 154
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.80 E-value=0.073 Score=49.00 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=38.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+|||+|++.+..|.+. ++.+-.+|++.+. .....+..+...+|++++
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTILF 84 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEEE
Confidence 48889999999999998877653 4667777776521 122234468889998864
No 155
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.72 E-value=0.059 Score=47.43 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l--------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-|++|+.+||+.|+.....|... ++.+..+|++.++. +.+..+...+|.+++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCCCCcCCEEEE
Confidence 48899999999999876666441 36677777766544 445678899999855
No 156
>PRK10996 thioredoxin 2; Provisional
Probab=94.70 E-value=0.11 Score=50.45 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
-++.|+.+||+.|+.....|... ++.+..+|++..+. +.+..+..++|++++ +|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEECCEEE
Confidence 38889999999999887777542 46677778876654 455668889998776 77654
No 157
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.61 E-value=0.091 Score=53.34 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=43.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~ 489 (843)
|+-|+.+||+.|+.+...|..+ .+.|..||++.. .+....+..++|++.+ +|+.++.+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEE
Confidence 6678899999999888877653 567888888742 5666678889997655 88877544
No 158
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=94.60 E-value=0.1 Score=46.28 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=37.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYW------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
+++|..+||++|+..+..|.+ ..+.+..+|++..++ +.+..+...+|++++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~ 78 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCCccCEEEE
Confidence 778889999999998877754 245677777776554 445568889998755
No 159
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.59 E-value=0.12 Score=54.69 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=41.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
-++.|..+||++|++....+.+. .+.+..+|++.++ .+.+..+..++|++++ +|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence 37889999999999998887653 2556666766554 3555678889998765 66655
No 160
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=94.58 E-value=0.085 Score=50.45 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=46.8
Q ss_pred cEEEEEcCC--ChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccch
Q 003162 426 RVILYTRLG--CQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS 490 (843)
Q Consensus 426 kVVIYTk~g--CP~C~rAK~lL~~l-----G-I~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~D 490 (843)
.|+.|+.+| ||.|..+.-+|.+. + +.|..+|++.++ ++....+..++|++.+ +|+.++...
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~~ 100 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVLA 100 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEEe
Confidence 488889996 99999999888664 2 456788888766 4566778899998766 888876553
No 161
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=94.56 E-value=0.085 Score=46.77 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=38.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 003162 426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l---------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk 484 (843)
-++.|..+||++|+.....|.+. .+.+..+|.+..+. +.+..+...+|++++ +|+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCCcCCEEEEEeCCC
Confidence 37889999999999877666432 35667777766553 344567889998665 554
No 162
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.50 E-value=0.095 Score=46.34 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=37.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c----CCceEEEEcCC-ChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYW----K----RLRYVEINIDV-YPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----l----GI~YeeIDId~-d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|+.+||++|++....|.. . ++.+..+|.+. .+. +.+..+..++|.+++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence 4888999999999988777754 2 35566667665 443 444567889998876
No 163
>PLN02378 glutathione S-transferase DHAR1
Probab=94.48 E-value=0.083 Score=54.24 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG 488 (843)
..||||.++.-+|..+|++|+.+.|+... ..+++.+++..++||++..+|..+.-
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~E 72 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTD 72 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecC
Confidence 45999999999999999999988776422 22467788889999999888765443
No 164
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=94.45 E-value=0.061 Score=54.11 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=49.8
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC---hhHHHHHHHHhCCCCcceEEEcCeeeccch
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVY---PSRKMELEKFAGSSAVPKVFFNEILMGGLS 490 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d---~e~rqELke~sG~~TVPqIFInGk~IGG~D 490 (843)
++|+.+.||+|.+++-+|..+||+|+.+.++.. .....++.+.+...+||.+..+|..+....
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~ 66 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSL 66 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHH
Confidence 378888999999999999999999999888631 222356777888899999999886654443
No 165
>PLN02395 glutathione S-transferase
Probab=94.31 E-value=0.13 Score=52.11 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=49.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEEcCeeeccch
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFFNEILMGGLS 490 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFInGk~IGG~D 490 (843)
+++|..++|+ |.+++-+|..+|++|+.+.|+.. .....++.+.+...+||++..+|..+....
T Consensus 3 ~~ly~~~~~~-~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~ 67 (215)
T PLN02395 3 LKVYGPAFAS-PKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESR 67 (215)
T ss_pred EEEEcCCcCc-HHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHH
Confidence 7899988764 89999999999999999887642 223356788888999999988876554443
No 166
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.25 E-value=0.18 Score=53.45 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=45.0
Q ss_pred cccEEEEEcCCChhHHHHHHHHHhc---CCceEEEEcC---CChh-------------HHH-------------------
Q 003162 424 KGRVILYTRLGCQESREVRLFLYWK---RLRYVEINID---VYPS-------------RKM------------------- 465 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~lL~~l---GI~YeeIDId---~d~e-------------~rq------------------- 465 (843)
+..|++|+-+.||||+++...|.++ ||.+..+... .++. ...
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~ 187 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD 187 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence 3359999999999999998888774 5665444321 1110 000
Q ss_pred -----HHHHHhCCCCcceEEE-cCeeeccchh
Q 003162 466 -----ELEKFAGSSAVPKVFF-NEILMGGLSE 491 (843)
Q Consensus 466 -----ELke~sG~~TVPqIFI-nGk~IGG~De 491 (843)
++.+..|...+|.|++ ||+.+.|+..
T Consensus 188 v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~ 219 (232)
T PRK10877 188 IADHYALGVQFGVQGTPAIVLSNGTLVPGYQG 219 (232)
T ss_pred HHHhHHHHHHcCCccccEEEEcCCeEeeCCCC
Confidence 1112236789999998 9999999743
No 167
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=94.15 E-value=0.12 Score=49.09 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=38.4
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.++..|.+. .+.+..+|++.++.. ..+..+..++|+|.+
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~l 90 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHL 90 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEE
Confidence 38889999999999998888764 266778888766543 223456677887654
No 168
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=94.06 E-value=0.11 Score=56.01 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccch
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLS 490 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~D 490 (843)
..||||.+++-+|..+|++|+.+.|+... ...++.+++...+||++..+|..+....
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~ 127 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSD 127 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHH
Confidence 45999999999999999999988776432 2345677888899999999886654443
No 169
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=93.82 E-value=0.14 Score=46.54 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=36.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh----c---C--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYW----K---R--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~----l---G--I~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
++.|..+|||+|++....|.+ . + +.+..+|++..+. +.+..+..++|++++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~~~Pt~~l 78 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCccccEEEE
Confidence 778999999999977766643 2 3 4455667665543 445578889999865
No 170
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.086 Score=52.93 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=45.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~I 486 (843)
|+.|..+||.-|+.....|.++ .+++-.+|++++++ +.+.++...||+|++ ||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcceeeeeEEEEEECCEEe
Confidence 8899999999999999888764 56677888888877 445677889998766 77655
No 171
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=93.58 E-value=0.17 Score=48.95 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHHHHH-HHHh--------cCCceEEEEcCCChhHHHHHHH----HhCCCCcceEEE---cCeeeccc
Q 003162 427 VILYTRLGCQESREVRL-FLYW--------KRLRYVEINIDVYPSRKMELEK----FAGSSAVPKVFF---NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~-lL~~--------lGI~YeeIDId~d~e~rqELke----~sG~~TVPqIFI---nGk~IGG~ 489 (843)
++.|+.+||++|++... .|.. .+.-+..+|++..++..+.+.+ +.|...+|.+.+ +|+.+-++
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 55688999999998854 2222 2444556677666665543332 457889999887 67777444
No 172
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.55 E-value=0.2 Score=51.64 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHHHH----HHHHHhcCCceEEEEcCCCh-----hH----HHHHHHHhCC--CCcceEEE
Q 003162 427 VILYTRLGCQESREV----RLFLYWKRLRYVEINIDVYP-----SR----KMELEKFAGS--SAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rA----K~lL~~lGI~YeeIDId~d~-----e~----rqELke~sG~--~TVPqIFI 481 (843)
+++|..+|||+|++. +++-+++|+++.-|+++... .. ...+.+..|. ..+|..|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 889999999999987 66666779998888887441 11 1234445563 68999888
No 173
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=93.49 E-value=0.18 Score=44.68 Aligned_cols=57 Identities=7% Similarity=0.086 Sum_probs=37.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh--------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 003162 426 RVILYTRLGCQESREVRLFLYW--------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~--------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk 484 (843)
-++.|+.+||++|+.....|.. .++.+..+|++.+. -..+....|..++|.+++ +|+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCCccccEEEEEeCCC
Confidence 3789999999999988655532 23556677776521 123445568889998755 444
No 174
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.15 Score=51.66 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=49.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hHHHHHHHHhCCCCcceEEEcCe
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SRKMELEKFAGSSAVPKVFFNEI 484 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~-e~rqELke~sG~~TVPqIFInGk 484 (843)
++|..+.+|+|.++.-+|..+|++|+.+.|+... ...+++..++...+||++..++-
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~ 59 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDG 59 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCC
Confidence 5789999999999999999999999999998653 44567888899999999998874
No 175
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.15 Score=56.24 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=50.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceE--EEcCeeeccchh
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILMGGLSE 491 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqI--FInGk~IGG~De 491 (843)
-++.|+.|||+.|+.....|.++ .+....+|++.++.+. ...|.+++|+| |++|+.|-||.-
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA----aqfgiqsIPtV~af~dGqpVdgF~G 115 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA----AQFGVQSIPTVYAFKDGQPVDGFQG 115 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH----HHhCcCcCCeEEEeeCCcCccccCC
Confidence 47788999999999999999875 4556788888877744 46788999987 569999999964
No 176
>PRK10357 putative glutathione S-transferase; Provisional
Probab=93.30 E-value=0.17 Score=50.81 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeee
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILM 486 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI-nGk~I 486 (843)
++|+.+.||++++++-+|..+||+|+.+.++.... ..++.+++...+||++.. +|..+
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l 60 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECW 60 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCee
Confidence 58999999999999999999999999988864322 234556678899999985 45433
No 177
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=93.15 E-value=0.16 Score=49.02 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=38.9
Q ss_pred EEEEEc-------CCChhHHHHHHHHHh----c--CCceEEEEcCCChhH---HHHHHHHhCCC-CcceEEE
Q 003162 427 VILYTR-------LGCQESREVRLFLYW----K--RLRYVEINIDVYPSR---KMELEKFAGSS-AVPKVFF 481 (843)
Q Consensus 427 VVIYTk-------~gCP~C~rAK~lL~~----l--GI~YeeIDId~d~e~---rqELke~sG~~-TVPqIFI 481 (843)
|+.|+. +|||.|+.+...|++ . ++.|..+|++..+.. -..+....+.. .+|++.+
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 677888 899999988776644 2 478889998765421 13444555666 8999877
No 178
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.04 E-value=0.29 Score=41.87 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=39.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChh-----------------------HHH-----HHHHHhC
Q 003162 427 VILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPS-----------------------RKM-----ELEKFAG 472 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e-----------------------~rq-----ELke~sG 472 (843)
|++|+.+.||||..+...|.+. ++.+..+.+...+. ... .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998888764 56666666542221 000 1122347
Q ss_pred CCCcceEEEcC
Q 003162 473 SSAVPKVFFNE 483 (843)
Q Consensus 473 ~~TVPqIFInG 483 (843)
...+|.++++|
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 78999999999
No 179
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=92.76 E-value=0.61 Score=40.89 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=48.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHH--HhCCCCcceEEEcCeeeccchhHHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEK--FAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke--~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
.++|..+..+.|.+++-+|...|++|+.+.++..+... .+.. .....+||++.++|..+....-+...
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence 56899999999999999999999999998886432211 1111 11257999999998777665544443
No 180
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=92.52 E-value=0.27 Score=43.46 Aligned_cols=51 Identities=6% Similarity=0.124 Sum_probs=35.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l--------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.....|.+. .+.+..+|.+.+ ++....+..++|++++
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEEE
Confidence 37789999999999888777543 255666776643 2333345589998876
No 181
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.51 E-value=0.064 Score=52.08 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=37.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----c-CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEc---Ceeeccc
Q 003162 426 RVILYTRLGCQESREVRLFLYW----K-RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFN---EILMGGL 489 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----l-GI~YeeIDId~d~e~rqELke~sG~~TVPqIFIn---Gk~IGG~ 489 (843)
.|.+++-+|||.|.+..-+|.+ . ++++..+-.+.+++..+.+.. .|.+.+|++++= |+.+|-+
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEEE-TT--EEEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEEEcCCCCEeEEE
Confidence 6999999999999987766654 3 777777777666665544444 688999998883 4544433
No 182
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=92.47 E-value=0.39 Score=49.02 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=44.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCC--hhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVY--PSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d--~e~rqELke~sG~~TVPqIFI 481 (843)
+++|..+ +++|.+++-+|..+||+|+.++|+.. +....++.+++...+||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 5689877 69999999999999999998887642 223457788888999999987
No 183
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=92.40 E-value=0.57 Score=44.02 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhH--------------------HHHHHHHhCCCCcc
Q 003162 427 VILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSR--------------------KMELEKFAGSSAVP 477 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l---------GI~YeeIDId~d~e~--------------------rqELke~sG~~TVP 477 (843)
++.|..+|||.|++....|.+. ++.+..++++...+. ...+.+..|...+|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 101 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIP 101 (131)
T ss_pred EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCC
Confidence 6677789999999766665432 566667777644321 13445556888899
Q ss_pred eEEE
Q 003162 478 KVFF 481 (843)
Q Consensus 478 qIFI 481 (843)
.+++
T Consensus 102 ~~~l 105 (131)
T cd03009 102 TLII 105 (131)
T ss_pred EEEE
Confidence 8877
No 184
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.28 Score=46.33 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=40.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCe
Q 003162 427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEI 484 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lG-----I~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk 484 (843)
|+-|+.+||+-|+...-.+.++- +.|-.+|+++ -+++....+...+|++.+ +|+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCE
Confidence 55589999999999999998864 4466788876 344555568889998876 554
No 185
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=92.34 E-value=0.53 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.8
Q ss_pred ccEEEEEcCCChhHHHHHHHHH--hcCCceEEEEc
Q 003162 425 GRVILYTRLGCQESREVRLFLY--WKRLRYVEINI 457 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~--~lGI~YeeIDI 457 (843)
..|++|+-+.||||+++...|. ..++.+..+-+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 3699999999999999999997 34666555543
No 186
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=92.16 E-value=0.61 Score=44.21 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChh---------------------HHHHHHHHhCCCCc
Q 003162 427 VILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPS---------------------RKMELEKFAGSSAV 476 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-------l--GI~YeeIDId~d~e---------------------~rqELke~sG~~TV 476 (843)
++.|..+|||.|+.....|.+ . ++.+..++++..+. ....+.+..|...+
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i 100 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI 100 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence 566778999999987655542 2 56666777765431 12344555677888
Q ss_pred ceEEE
Q 003162 477 PKVFF 481 (843)
Q Consensus 477 PqIFI 481 (843)
|.+++
T Consensus 101 Pt~~l 105 (132)
T cd02964 101 PTLVV 105 (132)
T ss_pred CEEEE
Confidence 98874
No 187
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=91.62 E-value=0.73 Score=40.09 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=50.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCC-CCcceEEEc-CeeeccchhHHH
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGS-SAVPKVFFN-EILMGGLSELKA 494 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~-~TVPqIFIn-Gk~IGG~DeL~e 494 (843)
+++|..++ .|..++-+|...|++|+.+.++. .....+++.+.... ..+|.+..+ |..+-...-+..
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence 67888877 89999999999999999887763 33334777787777 999999999 887766554443
No 188
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=91.60 E-value=0.38 Score=45.08 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=37.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l---------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||+.|+.....|.+. .+.+..+|.+.+. ...+.+..+.+.+|++++
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 47789999999999887776543 1445555543322 234556678889999877
No 189
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.36 E-value=0.39 Score=49.67 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~ 489 (843)
|+-|+.+||+.|+.+...|..+ .+.|..+|++.. ....+...+|+|++ ||+.++-+
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEEEEECCEEEEEE
Confidence 6678899999999998888764 577888888531 34568889998776 88765433
No 190
>PTZ00057 glutathione s-transferase; Provisional
Probab=91.31 E-value=0.64 Score=47.35 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=51.4
Q ss_pred CcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChh-H--HHHHH--HHhCCCCcceEEEcCeeeccchhHH
Q 003162 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPS-R--KMELE--KFAGSSAVPKVFFNEILMGGLSELK 493 (843)
Q Consensus 423 MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e-~--rqELk--e~sG~~TVPqIFInGk~IGG~DeL~ 493 (843)
|.+.+++|..+..+.|.+++-+|..+||+|+.+.+....+ . .++++ ..+....||.+.+||..+....-+.
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence 3456889999889999999999999999999998853222 1 11112 2467789999999887665544333
No 191
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=91.22 E-value=0.54 Score=45.38 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=40.2
Q ss_pred EEEEEcCCCh--hHH----------HHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE--EcCeeec
Q 003162 427 VILYTRLGCQ--ESR----------EVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF--FNEILMG 487 (843)
Q Consensus 427 VVIYTk~gCP--~C~----------rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIF--InGk~IG 487 (843)
|+-|...||+ +|+ .|.++|+..++.+..+|++.+++ +....|.+++|++. -+|+.+.
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDSIYVFKDDEVIE 101 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccEEEEEECCEEEE
Confidence 4444555564 597 45566667799999999998765 44567888899874 4887663
No 192
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=91.03 E-value=0.42 Score=46.09 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcce--EEEcCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPK--VFFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----G-I~YeeIDId~d~e~rqELke~sG~~TVPq--IFInGk~I 486 (843)
|+=|+.+|||-|+..-.+|.++ + +.|-.+|+++.++..+ ..+...+|+ +|.+|+|+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~----~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQ----YFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHH----hcCceeCcEEEEEECCcEE
Confidence 6679999999999998888775 3 6677889988777444 334334444 56689887
No 193
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=90.59 E-value=0.71 Score=40.48 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHh
Q 003162 434 GCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDE 497 (843)
Q Consensus 434 gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~e 497 (843)
.+|+|-++..+|+-.|++|+.+... ++. .+....+|.|..+|+.|+|+..+.+..+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 4799999999999999999766432 222 2335679999999999999988887654
No 194
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=90.43 E-value=0.56 Score=50.93 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=41.0
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCChh-----H--HHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYPS-----R--KMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~----~lGI~YeeIDId~d~e-----~--rqELke~sG~~TVPqIFI 481 (843)
.++.|..+|||+|+.....|. ++|+.+..|+++..+. . -..+.+..|..++|.+|+
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 477899999999998877664 4688888888875321 0 123455678999999987
No 195
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=90.10 E-value=0.63 Score=46.38 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=38.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCC-CcceE-EE-cCe
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSS-AVPKV-FF-NEI 484 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----G-I~YeeIDId~d~e~rqELke~sG~~-TVPqI-FI-nGk 484 (843)
|+-|+.+||+.|+..-..|.+. + +.+..+||+..++..+ ..+.. .+|.+ |+ +|+
T Consensus 27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~----~y~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNT----MYELYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHH----HcCccCCCcEEEEEECCe
Confidence 7789999999999998888764 2 4467889998776544 44444 44566 44 444
No 196
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.04 E-value=1.6 Score=41.13 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.1
Q ss_pred ccEEEEEcCCChhHHHHHHHHHh
Q 003162 425 GRVILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~~ 447 (843)
..|++|+-++||||.+....|.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 35999999999999988776665
No 197
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=89.92 E-value=0.59 Score=41.04 Aligned_cols=50 Identities=14% Similarity=0.379 Sum_probs=29.6
Q ss_pred EEEEEcCCChhHHHHHHHHHh---------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYW---------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~---------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
+++|+.+||++|+..++.+-. .++-+..+|++.... ...+.. ..+|.++|
T Consensus 21 lv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NAQFDR----QGYPTFFF 79 (82)
T ss_dssp EEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HHHHHH----CSSSEEEE
T ss_pred EEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hHHhCC----ccCCEEEE
Confidence 678899999999987766522 234444555532222 112222 33999886
No 198
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.07 E-value=1.6 Score=42.68 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=44.4
Q ss_pred CcccEEEEEcCCChh---H-----------HHHHHHHHhcCCceEEEEcCCChhHHH------HHHHHhCCCCcceEEEc
Q 003162 423 MKGRVILYTRLGCQE---S-----------REVRLFLYWKRLRYVEINIDVYPSRKM------ELEKFAGSSAVPKVFFN 482 (843)
Q Consensus 423 MkgkVVIYTk~gCP~---C-----------~rAK~lL~~lGI~YeeIDId~d~e~rq------ELke~sG~~TVPqIFIn 482 (843)
|+ +|.||--.-|.. | ..+.++|++.|+.+..+++..+|.... ++.+..|.-.+|.++||
T Consensus 1 M~-~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVd 79 (123)
T PF06953_consen 1 MK-KIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVD 79 (123)
T ss_dssp ---EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEET
T ss_pred CC-ceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEEC
Confidence 45 799999776543 2 467788899999999999998876543 34445689999999999
Q ss_pred Ceee--ccchh
Q 003162 483 EILM--GGLSE 491 (843)
Q Consensus 483 Gk~I--GG~De 491 (843)
|+.+ |.+-.
T Consensus 80 Geiv~~G~YPt 90 (123)
T PF06953_consen 80 GEIVKTGRYPT 90 (123)
T ss_dssp TEEEEESS---
T ss_pred CEEEEecCCCC
Confidence 9877 55543
No 199
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=88.60 E-value=0.91 Score=40.47 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=39.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCC--CcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSS--AVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~--TVPqIFI 481 (843)
-+++|..+||+.|...+..|.+. .+.|..+|++..+. +.+..|.. .+|+|.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence 37788899999999999998763 36778888876444 44556766 8999887
No 200
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=88.32 E-value=1.4 Score=44.08 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=38.2
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCChh-----H----HHHHHHHh---CCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVYPS-----R----KMELEKFA---GSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~----~lGI~YeeIDId~d~e-----~----rqELke~s---G~~TVPqIFI 481 (843)
+++.|..+|||+|++..-.|. +.|+.+..++++.... . ...+.... +...+|+.|+
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 489999999999998777665 4577777788764321 0 11222333 5678899887
No 201
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=88.20 E-value=1.1 Score=52.35 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYWK-------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
|+.|..+||++|+.....|.+. ++.+..+|++.+.. +......+..++|+|.+
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEE
Confidence 7789999999999888877543 47788888886532 22234467788998766
No 202
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.86 E-value=1.2 Score=47.27 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHhcCCceE--EEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHH
Q 003162 434 GCQESREVRLFLYWKRLRYV--EINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELK 493 (843)
Q Consensus 434 gCP~C~rAK~lL~~lGI~Ye--eIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~ 493 (843)
.||+|++.-..|..+|++|. .+|+...| ++++.+++.+.+|.|-+|++.+-..+.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie 78 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGGKPPVLKFDEKWVTDSDKIE 78 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCCCCCeEEeCCceeccHHHHH
Confidence 49999999999999999976 45555444 46788899999999999999887665443
No 203
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=87.84 E-value=0.96 Score=40.34 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHH
Q 003162 433 LGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALD 496 (843)
Q Consensus 433 ~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~ 496 (843)
+..+.|.++..+|+..|++|+.+++...+. .+....||.|.+||+.|+...-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 457889999999999999999886532111 223478999999999998887666554
No 204
>PRK11752 putative S-transferase; Provisional
Probab=87.69 E-value=1.4 Score=47.19 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=44.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcC
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNE 483 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~--d~e~rqELke~sG~~TVPqIFInG 483 (843)
.+++|+.+ ||+|.+++-+|..+ |++|+.+.|+. ......++.+++...+||++..++
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~d 108 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRS 108 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCC
Confidence 37799965 99999999999986 88898877753 222345777888899999998753
No 205
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=87.58 E-value=1.7 Score=45.66 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=35.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc----eEEEEcC-------CCh-------hHHHHHHHHhC--CCCcceEEEcCe-e
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLR----YVEINID-------VYP-------SRKMELEKFAG--SSAVPKVFFNEI-L 485 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~----YeeIDId-------~d~-------e~rqELke~sG--~~TVPqIFInGk-~ 485 (843)
|+|||..||+.|--|-++|.++.-. --.+.|+ .|+ .++..+.+..| ....||++|||+ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 7899999999999999999875322 2222332 222 22334444443 567899999994 5
Q ss_pred eccch
Q 003162 486 MGGLS 490 (843)
Q Consensus 486 IGG~D 490 (843)
.+|.+
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 56665
No 206
>PF13728 TraF: F plasmid transfer operon protein
Probab=87.08 E-value=1.4 Score=46.38 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=42.1
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hcCCceEEEEcCCC-----hhH--HHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLY----WKRLRYVEINIDVY-----PSR--KMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~----~lGI~YeeIDId~d-----~e~--rqELke~sG~~TVPqIFI 481 (843)
.+++|.+++||||+....+|+ ++|+++..|++|.. +.. -..+.+..|..++|.+|+
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 488999999999987766664 57999999999732 111 134555678899999998
No 207
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=86.70 E-value=1.6 Score=52.12 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=40.5
Q ss_pred EEEEEcCCChhHHHHHHHH-------Hh-cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFL-------YW-KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL-------~~-lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
++-|+.+||++|+..+... +. .++.+..+|++.+.....++.+..+...+|++++
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~ 540 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILF 540 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEE
Confidence 6678999999999875542 11 3566778888765544556777789999999877
No 208
>PTZ00102 disulphide isomerase; Provisional
Probab=86.65 E-value=1.4 Score=50.05 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=36.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------c--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYW-------K--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-------l--GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|++....+.+ . .+.+..+|.+.+.. +.+..+...+|++++
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVRGYPTIKF 112 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCCcccEEEE
Confidence 3888999999999977654432 2 36677777766544 445567888998865
No 209
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=86.04 E-value=1.7 Score=48.62 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hcC--CceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 003162 427 VILYTRLGCQESREVRLFLY-------WKR--LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~-------~lG--I~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~ 485 (843)
++.|..+||++|++....+. ..+ +.+..+|.+.+++ +.+..|...+|++++ +|+.
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD----LAQKYGVSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH----HHHhCCCccccEEEEEeCCcc
Confidence 78899999999998765543 334 7777888776543 455668889998855 4543
No 210
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.97 E-value=1.6 Score=44.60 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCC------------hhHHHHHHHHhCCCCcceEEE---c
Q 003162 427 VILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVY------------PSRKMELEKFAGSSAVPKVFF---N 482 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l---------GI~YeeIDId~d------------~e~rqELke~sG~~TVPqIFI---n 482 (843)
+.||.+++|+||.+.|+-+... ++-+.++++... .....+|....+.++.|++++ +
T Consensus 46 llmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~ 125 (182)
T COG2143 46 LLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKT 125 (182)
T ss_pred EEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCC
Confidence 8899999999998877655321 244555665421 112346777788999999877 3
Q ss_pred Ceeec
Q 003162 483 EILMG 487 (843)
Q Consensus 483 Gk~IG 487 (843)
|+.|+
T Consensus 126 Gk~Il 130 (182)
T COG2143 126 GKTIL 130 (182)
T ss_pred CCEEE
Confidence 44454
No 211
>PTZ00062 glutaredoxin; Provisional
Probab=85.69 E-value=1.5 Score=46.00 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=37.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccch
Q 003162 427 VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS 490 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~D 490 (843)
|..|+.+|||.|+.+..+|.++ .+.|..||.+ .+...||.+.+ +|+.|+-+.
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~V~~vPtfv~~~~g~~i~r~~ 79 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DANNEYGVFEFYQNSQLINSLE 79 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cCcccceEEEEEECCEEEeeee
Confidence 5556699999999999999875 3555555543 67778996554 788776554
No 212
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=85.67 E-value=3.3 Score=41.61 Aligned_cols=66 Identities=12% Similarity=0.117 Sum_probs=50.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchh
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSE 491 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~De 491 (843)
++++|-.|+|.=|..=-+.|+.+|+++..+..+....+++.|--.....+.=+..|||.+|-|.-.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVP 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCC
Confidence 588999999999999999999999999988887644433332111123577789999999988743
No 213
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=85.26 E-value=3.9 Score=38.12 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=25.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCceEEEEcCCCh
Q 003162 427 VILYTRLGCQESREVRLFLYWK----RLRYVEINIDVYP 461 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~l----GI~YeeIDId~d~ 461 (843)
|+.|..+|||.|......|.++ ++.+..++++...
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 7788899999999877776543 4666666665443
No 214
>PLN02309 5'-adenylylsulfate reductase
Probab=84.75 E-value=1.8 Score=50.71 Aligned_cols=53 Identities=6% Similarity=0.027 Sum_probs=38.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-------CCceEEEEcC-CChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-------RLRYVEINID-VYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-------GI~YeeIDId-~d~e~rqELke~sG~~TVPqIFI 481 (843)
-|+.|..+||++|+.++..|.+. ++.+-.+|++ .+.. ...+..+..++|+|++
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEE
Confidence 48899999999999888777553 4667777776 3232 1223467889999876
No 215
>PRK10542 glutathionine S-transferase; Provisional
Probab=84.73 E-value=2.1 Score=42.83 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=42.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh---hHHHHHHHHhCCCCcceEEE-cCeeec
Q 003162 428 ILYTRLGCQESREVRLFLYWKRLRYVEINIDVYP---SRKMELEKFAGSSAVPKVFF-NEILMG 487 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~---e~rqELke~sG~~TVPqIFI-nGk~IG 487 (843)
++|..++ +.+.++.-+|..+||+|+.+.|+... ...+++.+++...+||++.+ +|..|-
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~ 64 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLT 64 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEee
Confidence 3676553 34778888999999999988776421 12356788888999999987 554443
No 216
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=83.71 E-value=3.3 Score=40.39 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=24.6
Q ss_pred cEEEEEcCCChhHHHHHHHHH-------hcCCceEEEEcCCCh
Q 003162 426 RVILYTRLGCQESREVRLFLY-------WKRLRYVEINIDVYP 461 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~-------~lGI~YeeIDId~d~ 461 (843)
-++.|..+|||+|+.....|. ..++.+..++.+..+
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 367888999999987544442 235677777776543
No 217
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=83.27 E-value=3.9 Score=37.08 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=31.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIF 480 (843)
-|+.|..+|||.|++....|.++ ++.+..+ .+.+.+....+.+..+...+|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v-~~~~~~~~~~~~~~~~~~~~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA-SDGEKAEHQRFLKKHGLEAFPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE-eCCCHHHHHHHHHHhCCCCCcEEe
Confidence 36778899999999876666543 3333333 233333344444445555678764
No 218
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=83.08 E-value=5 Score=35.52 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=43.4
Q ss_pred EEEcCCChhHHHHHHHHHhcCCceEEEEcCCCh-hH--HHH-HHHH----hCCCCcceEEEcCeeeccchhHHHH
Q 003162 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYP-SR--KME-LEKF----AGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 429 IYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~-e~--rqE-Lke~----sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
+|.-..=+.|.+++-+|..+|++|+.+.++... +. .++ .... .-..+||++..+|..+.-..-++..
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 444444467889999999999999988886422 10 111 2111 1567999999888766555444443
No 219
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=82.87 E-value=4.3 Score=41.38 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=23.0
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcC
Q 003162 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINID 458 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL----~~lGI~YeeIDId 458 (843)
-|+.|..+|||.|++....+ ++.++.+.-+..+
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~ 113 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG 113 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 37778999999998754444 4457777666643
No 220
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=1.7 Score=45.24 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=45.6
Q ss_pred EEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeeccchhHH
Q 003162 429 LYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELK 493 (843)
Q Consensus 429 IYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI-nGk~IGG~DeL~ 493 (843)
+|.-.-||||.+|+.++--++||++.+-+..+.+... ..+-|+..||.+.- +|+..+-.=++.
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV 66 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP--IRMIGQKQVPILQKEDGRAMPESLDIV 66 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcccCh--hhhhcccccceEEccccccchhhhHHH
Confidence 5555679999999999999999999888765544222 34568999998876 455554443333
No 221
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=82.01 E-value=1.5 Score=40.44 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=17.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 003162 426 RVILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~ 447 (843)
.++.|..+|||+|......|..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQ 44 (123)
T ss_pred EEEEEECCcChhhhhhChHHHH
Confidence 4778889999999988766654
No 222
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=81.92 E-value=4.8 Score=40.80 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEEcCCChhHHHHHHHHH---hcCCceEEEEcCCChh
Q 003162 427 VILYTRLGCQESREVRLFLY---WKRLRYVEINIDVYPS 462 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~---~lGI~YeeIDId~d~e 462 (843)
|+.|..+|||.|++....|. +.|+.+.-++++.+++
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ 110 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 67788999999998665554 4578888888765544
No 223
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=81.79 E-value=5.7 Score=39.69 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=25.3
Q ss_pred EEEEEcCCChhHHHHHHHHHh---cCCceEEEEcCCC
Q 003162 427 VILYTRLGCQESREVRLFLYW---KRLRYVEINIDVY 460 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~---lGI~YeeIDId~d 460 (843)
++.|..+|||.|++....|.+ .|+.+..++++..
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 777889999999987666644 4777777776543
No 224
>PTZ00102 disulphide isomerase; Provisional
Probab=80.79 E-value=2.5 Score=48.02 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc--------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK--------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l--------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.....|.+. .+.+..+|.+.+.. .....+.+.+|++++
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PLEEFSWSAFPTILF 437 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----chhcCCCcccCeEEE
Confidence 37788899999999888877653 24466677765443 223446778998866
No 225
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=80.72 E-value=5.8 Score=34.48 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=28.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCC-hhHHHHH
Q 003162 426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVY-PSRKMEL 467 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-------lGI~YeeIDId~d-~e~rqEL 467 (843)
-++.|..+|||+|.+....|.+ .++.+..++++.. ++....+
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~ 71 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAF 71 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHH
Confidence 3778889999999866555543 2567778888764 4433333
No 226
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=80.15 E-value=4.2 Score=40.60 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=26.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh--------------cCCceEEEEcCCChh
Q 003162 427 VILYTRLGCQESREVRLFLYW--------------KRLRYVEINIDVYPS 462 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~--------------lGI~YeeIDId~d~e 462 (843)
++-|+.+|||.|++..-.|.+ .++.+..|+++.+.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 556789999999998877754 156677777765544
No 227
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=79.00 E-value=2.3 Score=46.55 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=48.5
Q ss_pred cEEEEEcC---CC----hhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 426 RVILYTRL---GC----QESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 426 kVVIYTk~---gC----P~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
.|.+|.-+ +| |||.++--+|+..+|||+.++-.. +.++-..++|-|-.||++|-+.+-+..
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEeCCeeccccHHHHH
Confidence 36677644 45 589999999999999999988752 345667899999999999999875443
No 228
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=78.84 E-value=7.9 Score=36.85 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=33.7
Q ss_pred EEEEEcC-CChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcce
Q 003162 427 VILYTRL-GCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPK 478 (843)
Q Consensus 427 VVIYTk~-gCP~C~rAK~lL-------~~lGI~YeeIDId~d~e~rqELke~sG~~TVPq 478 (843)
|+.|..+ |||.|......| ...|+.+..+..+.++..++.+.+ ....+|.
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~--~~~~~~~ 89 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK--YGINFPV 89 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH--TTTTSEE
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh--hCCCceE
Confidence 6667777 999998655333 446788999998888775555544 2234554
No 229
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.01 E-value=6.2 Score=41.56 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=51.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcC--CChhHHHHHHHHhCCCCcceEEEcCeeeccc
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINID--VYPSRKMELEKFAGSSAVPKVFFNEILMGGL 489 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId--~d~e~rqELke~sG~~TVPqIFInGk~IGG~ 489 (843)
+++|+.+.-|.|+++...++.+|++|+.+.|+ .......++.++....+||++.-+|-.+-..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS 67 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWES 67 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeH
Confidence 67999999999999999999999999988664 3334456677888999999998886655444
No 230
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=76.81 E-value=6.5 Score=33.26 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=31.4
Q ss_pred EcCCChhHHHHHHHHHhc------CCceEEEEcC-CChhHHHHHHHHhCCCCcceEE
Q 003162 431 TRLGCQESREVRLFLYWK------RLRYVEINID-VYPSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 431 Tk~gCP~C~rAK~lL~~l------GI~YeeIDId-~d~e~rqELke~sG~~TVPqIF 480 (843)
..+|||+|..+...|... ++.+..+++. ..+.....+.. ....+|.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~ 94 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLL 94 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEE
Confidence 599999999998887653 3678888885 45554444432 134456655
No 231
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.46 E-value=6 Score=42.29 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=44.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCc--eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeecc
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLR--YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGG 488 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~--YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG 488 (843)
|.||+..+|..|...-++|+.+|+- +..++-...+.. .+ ..+.-+||-||++|+.+-+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~--~~~V~SvP~Vf~DGel~~~ 72 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AF--EKGVISVPSVFIDGELVYA 72 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hh--hcceeecceEEEcCeEEEc
Confidence 8899999999999999999998875 555555443331 11 2367899999999998844
No 232
>PHA03075 glutaredoxin-like protein; Provisional
Probab=76.46 E-value=3 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.2
Q ss_pred CcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEc
Q 003162 423 MKGRVILYTRLGCQESREVRLFLYWKRLRYVEINI 457 (843)
Q Consensus 423 MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDI 457 (843)
|+..+++|++|.|+-|+-+.++|.++.=+|+.+-|
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 67789999999999999999999888666654433
No 233
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=76.28 E-value=4.2 Score=37.74 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=33.5
Q ss_pred EEEEEcCCChhHHHHHH-HHHhcCC------ceEEEEcCCC-hhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRL-FLYWKRL------RYVEINIDVY-PSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~-lL~~lGI------~YeeIDId~d-~e~rqELke~sG~~TVPqIFI 481 (843)
++.+..+||++|+...+ .|..-.| .|..+-++.. ++ ...+....+...+|.+.+
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCCCeEEE
Confidence 55667899999987644 3332211 3555544432 33 345777778889998876
No 234
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.18 E-value=3.7 Score=42.92 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=40.4
Q ss_pred cEEEE--EcCCChhHHHHHHHHHhcCCceEEEEcC--CCh-hHHHHHHHHhCCCCcceEEEcCeeecc
Q 003162 426 RVILY--TRLGCQESREVRLFLYWKRLRYVEINID--VYP-SRKMELEKFAGSSAVPKVFFNEILMGG 488 (843)
Q Consensus 426 kVVIY--Tk~gCP~C~rAK~lL~~lGI~YeeIDId--~d~-e~rqELke~sG~~TVPqIFInGk~IGG 488 (843)
+.++| .+++|.|- |+-+|.-+||.|+++-|+ ... ..-.++++.....+||.+.|||..+-.
T Consensus 5 KpiLYSYWrSSCswR--VRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~e 70 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWR--VRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTE 70 (217)
T ss_pred cchhhhhhcccchHH--HHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeeh
Confidence 34455 47888774 555555566666655553 332 223478888888999999999987643
No 235
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=75.78 E-value=5.9 Score=43.20 Aligned_cols=58 Identities=10% Similarity=0.159 Sum_probs=42.2
Q ss_pred cEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCCh--h---HH--HHHHHHhCCCCcceEEEcC
Q 003162 426 RVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVYP--S---RK--MELEKFAGSSAVPKVFFNE 483 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL----~~lGI~YeeIDId~d~--e---~r--qELke~sG~~TVPqIFInG 483 (843)
.+++|.++.||||.+.--.| +++|++...|++|..+ . .+ ..+.+..|...+|.+|+=.
T Consensus 153 gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 153 GLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 58889999999999766665 5689999999998541 1 11 2234455788999999843
No 236
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=75.64 E-value=5.2 Score=35.27 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=23.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh--------cCCceEEEEcCCC
Q 003162 427 VILYTRLGCQESREVRLFLYW--------KRLRYVEINIDVY 460 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~--------lGI~YeeIDId~d 460 (843)
++.|..+||+.|.+....|.+ .++.+..|.++.+
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~ 46 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED 46 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence 678889999999987777754 2455666666644
No 237
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.08 E-value=7.7 Score=41.02 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=53.8
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
...++.-+..+.|.-++.+|+-.|++|+++.+..... -..++..+..+++|++-|+|..|...-.+.+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHH
Confidence 3567778899999999999999999999999976543 3345555778899999999988766544433
No 238
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=74.59 E-value=18 Score=34.01 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=38.5
Q ss_pred EEEEcC-CChhH------HHHHHHHHhc--------CCceEEEEcCCChhH--HHHH-HHHh-CCCCcceEEEcCeeec-
Q 003162 428 ILYTRL-GCQES------REVRLFLYWK--------RLRYVEINIDVYPSR--KMEL-EKFA-GSSAVPKVFFNEILMG- 487 (843)
Q Consensus 428 VIYTk~-gCP~C------~rAK~lL~~l--------GI~YeeIDId~d~e~--rqEL-ke~s-G~~TVPqIFInGk~IG- 487 (843)
+||+.. -|+.| +.+.+||+++ .+.|+++||...++- .+++ .++. .---.|.|.|+|+.||
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467765 37666 6777888753 455889999755432 2233 3333 4578999999999996
Q ss_pred cchhHHHH
Q 003162 488 GLSELKAL 495 (843)
Q Consensus 488 G~DeL~el 495 (843)
|.-.|+..
T Consensus 81 Gnp~LK~I 88 (93)
T PF07315_consen 81 GNPQLKDI 88 (93)
T ss_dssp SS--HHHH
T ss_pred CCccHHHH
Confidence 55444443
No 239
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=73.77 E-value=5.2 Score=44.84 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=36.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc---------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK---------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l---------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-++.|..+||++|+.....+.+. ++.+..+|++.+.- .. .+...+|++++
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~-----~~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDV-----PP-FEVEGFPTIKF 425 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCcc-----CC-CCccccCEEEE
Confidence 37789999999999887777552 46677888875432 12 55678999887
No 240
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=73.43 E-value=12 Score=36.13 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=40.6
Q ss_pred EEEEEc--CCCh---hHHHHHHHHHhc--CCceEEEEcCCChh-HHHHHHHHhCCC--CcceEEE
Q 003162 427 VILYTR--LGCQ---ESREVRLFLYWK--RLRYVEINIDVYPS-RKMELEKFAGSS--AVPKVFF 481 (843)
Q Consensus 427 VVIYTk--~gCP---~C~rAK~lL~~l--GI~YeeIDId~d~e-~rqELke~sG~~--TVPqIFI 481 (843)
++.|.. |||+ +|++...-+.+. .|.+-.+|++..++ .-..|....|.. .+|+|.+
T Consensus 22 lV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~l 86 (116)
T cd03007 22 LVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYL 86 (116)
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEE
Confidence 778889 9999 999887666443 47788889865433 235677888888 9998754
No 241
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=73.20 E-value=0.38 Score=59.06 Aligned_cols=76 Identities=24% Similarity=0.300 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCCceeeecccceeeecccccchhHHHHHHhh-ccCCHHHHHHHHHHHHhcccccccccccccccCC
Q 003162 535 DELALIVLKMKENVVVKDRFYKMRRFTNCFLGSEAVNFLSED-QYLEREEAVEFGRKLASKLFFRHVLDENLFEDGN 610 (843)
Q Consensus 535 ~eLa~lm~~~~~gi~IrDRr~~LrtYrnCF~GsELVDWLie~-~~~sReEAv~lGQ~LLd~GlI~hV~~~~~F~D~~ 610 (843)
.-|..++-.++..+.+.+|+...-.|++.|+|+++|+-|+-- ...+|.=|+-+|..|-.+.++|.|+.+|-.+|+.
T Consensus 276 AlLS~vA~efk~~l~lg~~~Kdgl~y~daFtGseavdvl~~Ii~t~DrnLalL~grsldaqK~fhDV~y~hrlrds~ 352 (1175)
T COG5422 276 ALLSRVAVEFKMRLQLGDHKKDGLLYRDAFTGSEAVDVLMLIIRTSDRNLALLNGRSLDAQKLFHDVTYDHRLRDSR 352 (1175)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhHHHHhhhccchhhHhhhhhhhccccceeeeecccccchhhhhhhhhhhhccccH
Confidence 445666667777889999998888999999999999999876 5678889999999999999999999998888763
No 242
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=71.90 E-value=4.4 Score=43.57 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=23.4
Q ss_pred ccEEEEEcCCChhHHHHHHHHHh---cC-CceEEEEc
Q 003162 425 GRVILYTRLGCQESREVRLFLYW---KR-LRYVEINI 457 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~~---lG-I~YeeIDI 457 (843)
..|++|+-+.||||++.-..+.. .| |.+..+.+
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 35999999999999998666543 23 55555543
No 243
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=68.73 E-value=14 Score=34.74 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred EEEE-EcCCChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEE
Q 003162 427 VILY-TRLGCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 427 VVIY-Tk~gCP~C~rAK~lL-------~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIF 480 (843)
|++| ...|||.|..-...| ...|+.+.-|..+...... .+.+.. ..++|.+.
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~-~~~~p~~~ 86 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK-FLPFPVYA 86 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc-CCCCeEEE
Confidence 4454 378999998744443 3457887777776543333 333323 34677554
No 244
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=68.69 E-value=16 Score=33.37 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=31.3
Q ss_pred EEEEEcC-CChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRL-GCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~-gCP~C~rAK~lL-------~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
|+.|... |||+|......| ...|+.+..+..+...+..+.+.+. + ..+|.+.-
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~-~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-G-LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-T-CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh-c-cccccccC
Confidence 5555555 999997554333 3457778888886544444444332 2 55666554
No 245
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=65.43 E-value=14 Score=40.31 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=41.0
Q ss_pred ccEEEEEcCCChhHHHHHHHH----HhcCCceEEEEcCCC--hh---HH--HHHHHHhCCCCcceEEEc
Q 003162 425 GRVILYTRLGCQESREVRLFL----YWKRLRYVEINIDVY--PS---RK--MELEKFAGSSAVPKVFFN 482 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL----~~lGI~YeeIDId~d--~e---~r--qELke~sG~~TVPqIFIn 482 (843)
..++.|.++.||||++.--+| +++|+++.-|.+|.. +. .+ ....+..|...+|.+|+=
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 358899999999999765555 467999999998742 11 11 122345678899999983
No 246
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=63.56 E-value=5.5 Score=38.74 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=26.4
Q ss_pred cCCChhHHHHHHHHHh----c--CCceEEEEcCCChhHHH---HHHH--HhCCCCcceEEE
Q 003162 432 RLGCQESREVRLFLYW----K--RLRYVEINIDVYPSRKM---ELEK--FAGSSAVPKVFF 481 (843)
Q Consensus 432 k~gCP~C~rAK~lL~~----l--GI~YeeIDId~d~e~rq---ELke--~sG~~TVPqIFI 481 (843)
++|||.|.+|.-.+++ . +..+.++.|...+..+. .++. ...-..||+++-
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 4699999998855543 2 55577777753332222 2333 235578999885
No 247
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=63.34 E-value=12 Score=44.25 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=38.4
Q ss_pred EEEEEcCCChhHH-------HHHHHHHhc--CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCee
Q 003162 427 VILYTRLGCQESR-------EVRLFLYWK--RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEIL 485 (843)
Q Consensus 427 VVIYTk~gCP~C~-------rAK~lL~~l--GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~ 485 (843)
++-|..|||.||+ +|-..|... .|+...||-... ..+...++.+.+|++.| ||+.
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEEEecCCc
Confidence 5678889999997 567777777 444555555433 45666778889998755 6653
No 248
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=63.17 E-value=17 Score=43.48 Aligned_cols=21 Identities=10% Similarity=-0.230 Sum_probs=17.5
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~ 447 (843)
|+-|..+|||.|++....|.+
T Consensus 60 vV~FWATWCppCk~emP~L~e 80 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEK 80 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHH
Confidence 677889999999998777754
No 249
>smart00594 UAS UAS domain.
Probab=62.02 E-value=29 Score=32.92 Aligned_cols=52 Identities=10% Similarity=0.202 Sum_probs=34.1
Q ss_pred EEEEEcCCChhHHHH----------HHHHHhcCCceEE--EEcCCChhHHHHHHHHhCCCCcceEEEcC
Q 003162 427 VILYTRLGCQESREV----------RLFLYWKRLRYVE--INIDVYPSRKMELEKFAGSSAVPKVFFNE 483 (843)
Q Consensus 427 VVIYTk~gCP~C~rA----------K~lL~~lGI~Yee--IDId~d~e~rqELke~sG~~TVPqIFInG 483 (843)
++.+..+||++|... +++|++ .|.. +|+... +. ..+....+..++|.+.+=+
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~-eg-~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTS-EG-QRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCCh-hH-HHHHHhcCcCCCCEEEEEe
Confidence 666778999999753 345543 2544 455433 32 4577778889999988743
No 250
>PTZ00056 glutathione peroxidase; Provisional
Probab=59.98 E-value=22 Score=36.88 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=21.9
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hcCCceEEEEcC
Q 003162 427 VILYTRLGCQESREVRLFLY-------WKRLRYVEINID 458 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~-------~lGI~YeeIDId 458 (843)
|+.|..+|||.|.+-...|. ..|+.+.-++++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 66788999999986333333 347777777653
No 251
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=59.54 E-value=40 Score=32.38 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=44.5
Q ss_pred cEEEEEcCC-ChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCC-CCcceEEE--cCeee
Q 003162 426 RVILYTRLG-CQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGS-SAVPKVFF--NEILM 486 (843)
Q Consensus 426 kVVIYTk~g-CP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~-~TVPqIFI--nGk~I 486 (843)
.++||--++ ||=+..|.+-|.+. .+++-.+||-.+..+-.++.+.+|. ..-||+++ ||+.+
T Consensus 21 ~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 21 PVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVV 91 (105)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEE
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEE
Confidence 588888665 99999999888763 3999999999998888889888885 68899887 77655
No 252
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.29 E-value=44 Score=31.87 Aligned_cols=71 Identities=15% Similarity=0.322 Sum_probs=45.8
Q ss_pred cEEEEEcCC-ChhH------HHHHHHHHhc--------CCceEEEEcCCChh--HHHHHHHH--hCCCCcceEEEcCeee
Q 003162 426 RVILYTRLG-CQES------REVRLFLYWK--------RLRYVEINIDVYPS--RKMELEKF--AGSSAVPKVFFNEILM 486 (843)
Q Consensus 426 kVVIYTk~g-CP~C------~rAK~lL~~l--------GI~YeeIDId~d~e--~rqELke~--sG~~TVPqIFInGk~I 486 (843)
++++|+... |..| +.+-+||+.. ...|++|||...+. ...++.+. ..-.-.|.|.++++.|
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiV 85 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIV 85 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEe
Confidence 477888764 7666 5677777753 33478999965442 22233222 2557899999999999
Q ss_pred c-cchhHHHHH
Q 003162 487 G-GLSELKALD 496 (843)
Q Consensus 487 G-G~DeL~el~ 496 (843)
+ |.-.|+..+
T Consensus 86 aeGnprlKdiy 96 (106)
T COG4837 86 AEGNPRLKDIY 96 (106)
T ss_pred ecCCchHHHHH
Confidence 4 555555544
No 253
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=58.04 E-value=30 Score=32.39 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=16.3
Q ss_pred cEEEEEcCCChhHHHHHHHHHh
Q 003162 426 RVILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~ 447 (843)
-|+.|..+|||.|.+....|.+
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~ 47 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTD 47 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 3677888999999976555543
No 254
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=57.62 E-value=21 Score=38.89 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=46.8
Q ss_pred ccEEEEEcCCChhHHHHHHHHHhcCCce----EEEEcC--------------CChhHHHHHHHHhCC--CCcceEEEcCe
Q 003162 425 GRVILYTRLGCQESREVRLFLYWKRLRY----VEINID--------------VYPSRKMELEKFAGS--SAVPKVFFNEI 484 (843)
Q Consensus 425 gkVVIYTk~gCP~C~rAK~lL~~lGI~Y----eeIDId--------------~d~e~rqELke~sG~--~TVPqIFInGk 484 (843)
+-|++||..||..|--|-+.|.++--+- -.+.|+ ++.+++..+.+..|. ...||+++||+
T Consensus 43 ~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 43 GVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred eEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 3589999999999999999998852221 111111 223333344444554 46799999995
Q ss_pred -eeccchhHHHHHhcCcchHHHHHHH
Q 003162 485 -LMGGLSELKALDESGKLDEKIEYLI 509 (843)
Q Consensus 485 -~IGG~DeL~el~esGeL~~lLk~~~ 509 (843)
+.-|.+. +.+..+|+...
T Consensus 123 ~~~~Gad~-------~~i~~~i~a~~ 141 (261)
T COG5429 123 VHANGADP-------GAIEDAIAAMA 141 (261)
T ss_pred hhhcCCCH-------HHHHHHHHHhh
Confidence 3444432 44555554443
No 255
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=57.58 E-value=26 Score=31.04 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHhcCCc---eEEEEcCCChhHHHHHHHHhCCCCcceEEE-cCeeeccchhHHHHH
Q 003162 435 CQESREVRLFLYWKRLR---YVEINIDVYPSRKMELEKFAGSSAVPKVFF-NEILMGGLSELKALD 496 (843)
Q Consensus 435 CP~C~rAK~lL~~lGI~---YeeIDId~d~e~rqELke~sG~~TVPqIFI-nGk~IGG~DeL~el~ 496 (843)
=|.|-.+..+|+-.+.+ |+.+-.. ++. ++....+|.+.. +++.+.|+..+.+..
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 57899999999999999 6666554 333 355678999999 999999999988764
No 256
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=56.21 E-value=15 Score=35.77 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=19.6
Q ss_pred cccEEEEEcCCChhHHHHHHHHHh
Q 003162 424 KGRVILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~lL~~ 447 (843)
+..|+.|+-..||||.++-..+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 446999999999999988777654
No 257
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=56.13 E-value=30 Score=32.43 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=26.5
Q ss_pred cCCChhHHHH-------HHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 003162 432 RLGCQESREV-------RLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (843)
Q Consensus 432 k~gCP~C~rA-------K~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqI 479 (843)
..|||.|... .+.|...|+.+..+.++......+.+.+ .+ ..+|.+
T Consensus 33 ~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~-~~-~~~~~l 85 (140)
T cd03017 33 KDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK-YG-LPFPLL 85 (140)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hC-CCceEE
Confidence 5789999753 3334556788777777654443333333 33 356643
No 258
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=55.25 E-value=26 Score=34.20 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=20.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcC
Q 003162 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINID 458 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-------lGI~YeeIDId 458 (843)
|+.|..+||| |......|.+ .|+.+.-+.++
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 5668899999 9875444443 46666666653
No 259
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=55.06 E-value=9.1 Score=42.14 Aligned_cols=72 Identities=15% Similarity=0.247 Sum_probs=58.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCC--ChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhc
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDV--YPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDES 498 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~--d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~es 498 (843)
.++|-.|.-=++++|+-.+.++||.|+.++|+- ....-.++.++.....||++.-|...|-..+.+....++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 679999999999999999999999999999972 233345677778888999887777778888877776654
No 260
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.90 E-value=16 Score=42.10 Aligned_cols=79 Identities=24% Similarity=0.201 Sum_probs=47.1
Q ss_pred cEEEEEcCCChhHHHHHHHHHh---cCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHHHHhcCcch
Q 003162 426 RVILYTRLGCQESREVRLFLYW---KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKALDESGKLD 502 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~---lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~el~esGeL~ 502 (843)
...-|..-+|..|-.+.+.|.- ++-...-.-|+ ....+.-.+--+...||.||.||+.+|.=. -.|+
T Consensus 119 ~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~Id--Ga~Fq~Evear~IMaVPtvflnGe~fg~GR--------mtle 188 (520)
T COG3634 119 HFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAID--GALFQDEVEARNIMAVPTVFLNGEEFGQGR--------MTLE 188 (520)
T ss_pred eEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEec--chhhHhHHHhccceecceEEEcchhhcccc--------eeHH
Confidence 4667888888888777777754 33333333332 222232223346789999999999886421 1356
Q ss_pred HHHHHHHhcCCC
Q 003162 503 EKIEYLITEAPP 514 (843)
Q Consensus 503 ~lLk~~~~~ap~ 514 (843)
++|.++-..+.+
T Consensus 189 eilaki~~gaa~ 200 (520)
T COG3634 189 EILAKIDTGAAK 200 (520)
T ss_pred HHHHHhcCCccc
Confidence 667666544433
No 261
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=53.55 E-value=35 Score=33.26 Aligned_cols=31 Identities=6% Similarity=0.032 Sum_probs=21.5
Q ss_pred EEEEEcCCChhHHHHHHHHH-------hcCCceEEEEc
Q 003162 427 VILYTRLGCQESREVRLFLY-------WKRLRYVEINI 457 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~-------~lGI~YeeIDI 457 (843)
|+.|..+|||+|.+...-|. ..|+.+.-++.
T Consensus 26 vv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred EEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 67888999999976544332 34677776764
No 262
>PLN02412 probable glutathione peroxidase
Probab=53.19 E-value=31 Score=34.53 Aligned_cols=53 Identities=6% Similarity=-0.058 Sum_probs=30.6
Q ss_pred EEEEEcCCChhHHHHHHH-------HHhcCCceEEEEcCC-------C-hhHHHHHHHHhCCCCcceEE
Q 003162 427 VILYTRLGCQESREVRLF-------LYWKRLRYVEINIDV-------Y-PSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~l-------L~~lGI~YeeIDId~-------d-~e~rqELke~sG~~TVPqIF 480 (843)
|+.|..+|||.|.+-... +...|+.+.-++.+. . .+....+.+.. ..++|.+.
T Consensus 33 lv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~-~~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF-KAEFPIFD 100 (167)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHcc-CCCCceEe
Confidence 556789999999963322 334577777776542 1 12223322322 36799875
No 263
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=52.64 E-value=27 Score=33.18 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=27.6
Q ss_pred EEEEE-cCCChhHHHHHHHHH-------hcCCceEEEEcCCChhHHHHHHHHhCCCCcce
Q 003162 427 VILYT-RLGCQESREVRLFLY-------WKRLRYVEINIDVYPSRKMELEKFAGSSAVPK 478 (843)
Q Consensus 427 VVIYT-k~gCP~C~rAK~lL~-------~lGI~YeeIDId~d~e~rqELke~sG~~TVPq 478 (843)
|++|. .+|||.|.+....|. +.|+.+.-+..+.....++.+ +..+ ..+|.
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~-~~~~-~~~~~ 89 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA-EENG-LTFPL 89 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH-HhcC-CCceE
Confidence 33443 689999985544443 347777777765433333333 3333 34554
No 264
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=51.86 E-value=13 Score=40.08 Aligned_cols=42 Identities=21% Similarity=0.096 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHhh--------------ccCCHHHHHHHHHHHHhcccccccccc
Q 003162 562 NCFLGSEAVNFLSED--------------QYLEREEAVEFGRKLASKLFFRHVLDE 603 (843)
Q Consensus 562 nCF~GsELVDWLie~--------------~~~sReEAv~lGQ~LLd~GlI~hV~~~ 603 (843)
.=|.|.++|+||.+. ...+|++|..++..|+.+++|..|...
T Consensus 20 eyFRgkr~vraL~s~~y~~~~~k~~~~lp~i~~r~da~~~~~~Li~~~l~~R~~k~ 75 (232)
T TIGR00869 20 DFFRVKRFVRALHSEEYANKSAKQPEIYPTIPSRLEAIEIFILLIKNQMVIRVDKL 75 (232)
T ss_pred EEeeHHHHHHHHhCcHhhhhcccCcccCCCCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 358899999999963 135699999999999999999999653
No 265
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=51.07 E-value=43 Score=31.29 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=28.8
Q ss_pred EEEEE-cCCChhHHHHHHHH-------HhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 003162 427 VILYT-RLGCQESREVRLFL-------YWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (843)
Q Consensus 427 VVIYT-k~gCP~C~rAK~lL-------~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqI 479 (843)
|+.|. ..|||.|.....-| ...++.+..+.++.. +....+.+..+..++|.+
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~-~~~~~~~~~~~~~~~~~l 85 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP-FSHKAWAEKEGGLNFPLL 85 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHhcccCCCceEE
Confidence 33334 57999998643333 345777888877543 323333333334566654
No 266
>PTZ00256 glutathione peroxidase; Provisional
Probab=49.56 E-value=45 Score=33.80 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=30.1
Q ss_pred EEEEcCCChhHHHHHHHHH-------hcCCceEEEEcCC-------C-hhHHHHHHHHhCCCCcceEE
Q 003162 428 ILYTRLGCQESREVRLFLY-------WKRLRYVEINIDV-------Y-PSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 428 VIYTk~gCP~C~rAK~lL~-------~lGI~YeeIDId~-------d-~e~rqELke~sG~~TVPqIF 480 (843)
++|..+|||.|.+-...|. ..|+.+.-++++. + ....+.+.+..| .++|.+.
T Consensus 46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~~ 112 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLFQ 112 (183)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCce
Confidence 4578999999997443333 4577777776531 1 223333333333 4688863
No 267
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=49.06 E-value=40 Score=32.54 Aligned_cols=45 Identities=11% Similarity=-0.208 Sum_probs=27.0
Q ss_pred CCChhHHH-------HHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceE
Q 003162 433 LGCQESRE-------VRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKV 479 (843)
Q Consensus 433 ~gCP~C~r-------AK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqI 479 (843)
.+||.|.. ..+.|...|+.+.-|.++......+.+.+ .+ .++|.+
T Consensus 41 ~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~-~~-~~~~~l 92 (154)
T PRK09437 41 AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK-EL-LNFTLL 92 (154)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-hC-CCCeEE
Confidence 47999964 34445556888888887654444444433 33 356754
No 268
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=47.58 E-value=50 Score=31.01 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=22.5
Q ss_pred cEEEEEcCCChh-HHHHHHHHHh-------cC---CceEEEEcCC
Q 003162 426 RVILYTRLGCQE-SREVRLFLYW-------KR---LRYVEINIDV 459 (843)
Q Consensus 426 kVVIYTk~gCP~-C~rAK~lL~~-------lG---I~YeeIDId~ 459 (843)
-|+.|..+||++ |.+....|.+ .+ +.+..|.++.
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 377778899998 9754444433 33 7777777653
No 269
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=47.18 E-value=45 Score=33.20 Aligned_cols=33 Identities=9% Similarity=-0.067 Sum_probs=21.2
Q ss_pred EEEEE--cCCChhHHHHHHHH-------HhcCCceEEEEcCC
Q 003162 427 VILYT--RLGCQESREVRLFL-------YWKRLRYVEINIDV 459 (843)
Q Consensus 427 VVIYT--k~gCP~C~rAK~lL-------~~lGI~YeeIDId~ 459 (843)
++||. ..|||.|......| ...|+.+..|.++.
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 44444 67999998754444 34577777776654
No 270
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=45.83 E-value=18 Score=35.82 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 003162 427 VILYTRLGCQESREVRLFL 445 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL 445 (843)
+++|.+.|||+|++.++..
T Consensus 27 mv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 27 MVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred EEEEeCCcCHhHHHHHHHh
Confidence 5568889999999877654
No 271
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=44.98 E-value=38 Score=33.25 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=31.1
Q ss_pred CChhHH-----------HHHHHHHhcCCc--eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 434 GCQESR-----------EVRLFLYWKRLR--YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 434 gCP~C~-----------rAK~lL~~lGI~--YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
+|+.|. .++..|..+||. |+++.++.....++. -..|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEeh
Confidence 799995 455567778888 556666543222221 5789999999955
No 272
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.49 E-value=24 Score=33.76 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=23.5
Q ss_pred cccEEEEEcCCChhHHHHHHHHH----hc----CCceEEEEcCC
Q 003162 424 KGRVILYTRLGCQESREVRLFLY----WK----RLRYVEINIDV 459 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~lL~----~l----GI~YeeIDId~ 459 (843)
+..|++|....||||.+.-..+. .+ .|.|..+++..
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 33699999999999987755443 32 45566666543
No 273
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=43.77 E-value=1.3e+02 Score=31.03 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=33.4
Q ss_pred EEEcCCChhHH----HHHHHH---HhcCCceEEEEcCCChh-----------------------HHHHHHHHhCCCCcce
Q 003162 429 LYTRLGCQESR----EVRLFL---YWKRLRYVEINIDVYPS-----------------------RKMELEKFAGSSAVPK 478 (843)
Q Consensus 429 IYTk~gCP~C~----rAK~lL---~~lGI~YeeIDId~d~e-----------------------~rqELke~sG~~TVPq 478 (843)
-|+..|||-|+ ..|+++ ++.+-+|+.+=|+.+.+ ..+.|...++..++|.
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~ 118 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPA 118 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCce
Confidence 45677999997 344444 44566788887765432 2333444556677887
Q ss_pred EEE
Q 003162 479 VFF 481 (843)
Q Consensus 479 IFI 481 (843)
+.+
T Consensus 119 l~i 121 (157)
T KOG2501|consen 119 LVI 121 (157)
T ss_pred eEE
Confidence 776
No 274
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=43.69 E-value=45 Score=32.93 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=27.1
Q ss_pred cEEEEEcCCChhHHHHHHHHH----hc-CCceEEEEcCCChh
Q 003162 426 RVILYTRLGCQESREVRLFLY----WK-RLRYVEINIDVYPS 462 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~----~l-GI~YeeIDId~d~e 462 (843)
+|++|.-..||||-.+...|. .. +++++.+-+...+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 489999999999976665554 45 77777777765444
No 275
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=42.88 E-value=1.8e+02 Score=33.20 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=25.8
Q ss_pred cccch-----hHHHHHHhhcc-CCHHHHHHHHHHHHhccc
Q 003162 563 CFLGS-----EAVNFLSEDQY-LEREEAVEFGRKLASKLF 596 (843)
Q Consensus 563 CF~Gs-----ELVDWLie~~~-~sReEAv~lGQ~LLd~Gl 596 (843)
.|+|+ +++.|+.+..+ .=|+=..+-+..|.+.|+
T Consensus 189 ~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGl 228 (375)
T KOG0912|consen 189 EFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGL 228 (375)
T ss_pred ccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCC
Confidence 57776 89999998743 346667778888888886
No 276
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=41.78 E-value=35 Score=35.62 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.2
Q ss_pred HhCCCCcceEEEcCeeeccchhH
Q 003162 470 FAGSSAVPKVFFNEILMGGLSEL 492 (843)
Q Consensus 470 ~sG~~TVPqIFInGk~IGG~DeL 492 (843)
..|....|.+||+|+.++|.-.+
T Consensus 210 ~~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 210 QLGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred hcCCCcCCeEEECCeeecCCCCH
Confidence 34789999999999999888653
No 277
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=41.49 E-value=16 Score=41.07 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=38.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcC-----CChhHHHHHHHHhCCCCcceEEE
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINID-----VYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId-----~d~e~rqELke~sG~~TVPqIFI 481 (843)
.+=|..|||.||++..-++.+-|.+...+.+. .+......+....|.+.+|+|.+
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~ 106 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKF 106 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEE
Confidence 56677899999999999998887776655432 22233344555568888998744
No 278
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=41.01 E-value=71 Score=34.52 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=23.2
Q ss_pred cEEEEEcCCChhHHHHHHH-------HHhcCCceEEEEcC
Q 003162 426 RVILYTRLGCQESREVRLF-------LYWKRLRYVEINID 458 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~l-------L~~lGI~YeeIDId 458 (843)
-|+.|..+|||.|..-... +...|+.+.-++++
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d 141 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN 141 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 3778889999999763333 33457777777764
No 279
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.18 E-value=24 Score=34.92 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=22.8
Q ss_pred cCCChhHHHHHHHHHh------cCCceEEEEcCCChh
Q 003162 432 RLGCQESREVRLFLYW------KRLRYVEINIDVYPS 462 (843)
Q Consensus 432 k~gCP~C~rAK~lL~~------lGI~YeeIDId~d~e 462 (843)
.+|||+|.+|--.+.+ .++.|..+++..-+.
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence 4799999998777654 356688888875444
No 280
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=39.91 E-value=1e+02 Score=31.81 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=28.8
Q ss_pred EEEEEcCCChhHHHHHH----------HHHhcCCceEE--EEcCCChhHHHHH----HHHhCCCCcceEEE---cCeeec
Q 003162 427 VILYTRLGCQESREVRL----------FLYWKRLRYVE--INIDVYPSRKMEL----EKFAGSSAVPKVFF---NEILMG 487 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~----------lL~~lGI~Yee--IDId~d~e~rqEL----ke~sG~~TVPqIFI---nGk~IG 487 (843)
++-.+.+||.||+.+.+ +|.+. |.- +|-++.|++...+ ..++|....|...+ +|+.|-
T Consensus 41 fl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 41 FLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred EEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 34455789999985543 34333 444 4445556654433 23457778887655 666664
Q ss_pred c
Q 003162 488 G 488 (843)
Q Consensus 488 G 488 (843)
|
T Consensus 118 ~ 118 (163)
T PF03190_consen 118 G 118 (163)
T ss_dssp E
T ss_pred e
Confidence 3
No 281
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=39.41 E-value=73 Score=33.28 Aligned_cols=36 Identities=14% Similarity=-0.025 Sum_probs=28.1
Q ss_pred cEEEEEcCCChhHHHHHHHH---HhcCCce------EEEEcCCCh
Q 003162 426 RVILYTRLGCQESREVRLFL---YWKRLRY------VEINIDVYP 461 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL---~~lGI~Y------eeIDId~d~ 461 (843)
.|+-|..+||+-|+.-.-+| .+.|+++ .-||++...
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~ 106 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAI 106 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccch
Confidence 57889999999998765555 5568998 888887654
No 282
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=38.93 E-value=94 Score=30.68 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=22.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCC
Q 003162 426 RVILYTRLGCQESREVRLFLYW-------KRLRYVEINIDV 459 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~-------lGI~YeeIDId~ 459 (843)
.|+.|..+|||.|.+....|.+ .++.+.-+.++.
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 3677778999999754333332 356676776653
No 283
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=38.84 E-value=42 Score=32.09 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=19.1
Q ss_pred HHhCCCCcceEEEcCeeeccchhHH
Q 003162 469 KFAGSSAVPKVFFNEILMGGLSELK 493 (843)
Q Consensus 469 e~sG~~TVPqIFInGk~IGG~DeL~ 493 (843)
...|...+|.|+|||+.+.|...+.
T Consensus 130 ~~~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 130 RQLGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HHHT-SSSSEEEETTCEEETTTSHH
T ss_pred HHcCCccccEEEECCEEeCCCCCHH
Confidence 4568899999999999998755443
No 284
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=38.64 E-value=87 Score=29.71 Aligned_cols=51 Identities=12% Similarity=-0.081 Sum_probs=28.5
Q ss_pred EEEEEcCC-ChhHHHHHHHHHh-----cCCceEEEEcCCChhHHHHHHHHhCCCCcce
Q 003162 427 VILYTRLG-CQESREVRLFLYW-----KRLRYVEINIDVYPSRKMELEKFAGSSAVPK 478 (843)
Q Consensus 427 VVIYTk~g-CP~C~rAK~lL~~-----lGI~YeeIDId~d~e~rqELke~sG~~TVPq 478 (843)
|+.|...| ||+|.+-...|.+ .|+.+.-|+++.... .++..+..+...+|.
T Consensus 30 vl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~-~~~~~~~~~~~~~~~ 86 (143)
T cd03014 30 VISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFA-QKRWCGAEGVDNVTT 86 (143)
T ss_pred EEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHH-HHHHHHhcCCCCceE
Confidence 34444545 7999876655543 277777777754333 344444344445663
No 285
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=18 Score=42.98 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=23.0
Q ss_pred cEEEEEcCCChhHHHHHHHHHhcCCceE
Q 003162 426 RVILYTRLGCQESREVRLFLYWKRLRYV 453 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~lGI~Ye 453 (843)
..+-|..|||+||++..-++++++-.|.
T Consensus 387 VLvEfyAPWCgHCk~laP~~eeLAe~~~ 414 (493)
T KOG0190|consen 387 VLVEFYAPWCGHCKALAPIYEELAEKYK 414 (493)
T ss_pred eEEEEcCcccchhhhhhhHHHHHHHHhc
Confidence 4777888999999999988888765554
No 286
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.95 E-value=38 Score=38.25 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=35.7
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc-----C-CceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK-----R-LRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l-----G-I~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
-+++|..|||++|.+....+.+. | +.+-.+|.+. -..+.+..+...+|++.+
T Consensus 50 ~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~----~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 50 WLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE----HKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred eEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh----hHHHHHhcCCccCcEEEE
Confidence 58899999999998766655532 2 2233334333 345677788999999877
No 287
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=34.74 E-value=43 Score=33.16 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCceEEEE-cCCChhHHHHHHH------HhCCCCcceEEEcCeeeccchhHHHH
Q 003162 440 EVRLFLYWKRLRYVEIN-IDVYPSRKMELEK------FAGSSAVPKVFFNEILMGGLSELKAL 495 (843)
Q Consensus 440 rAK~lL~~lGI~YeeID-Id~d~e~rqELke------~sG~~TVPqIFInGk~IGG~DeL~el 495 (843)
....++.+.|+.-..+. ...++..++.+.+ ..|...||.++|||+.+-|.+.+..+
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHH
Confidence 45677788888643322 1233444443332 34889999999999999998876544
No 288
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.54 E-value=65 Score=35.67 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CceEEEEcCCChhHHHHHHHHhCCCCcceE--EEcCeee
Q 003162 427 VILYTRLGCQESREVRLFLYWKR-----LRYVEINIDVYPSRKMELEKFAGSSAVPKV--FFNEILM 486 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lG-----I~YeeIDId~d~e~rqELke~sG~~TVPqI--FInGk~I 486 (843)
|+=||.+||+-|++.--++..+- --|-.+||++-.. ...-.|...+|+. |.||+.|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~----taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG----TAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc----hhhhcCcccCceEEEEecCeEe
Confidence 67799999999999999998763 3366777763222 1223477888875 5688766
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=33.21 E-value=85 Score=40.72 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=16.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 003162 427 VILYTRLGCQESREVRLFLYW 447 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~ 447 (843)
|+-|+.+|||.|+.....|++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~ 444 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEF 444 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHH
Confidence 667889999999986666654
No 290
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=31.93 E-value=1e+02 Score=30.71 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHH----hc---CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE--cCeeeccch
Q 003162 435 CQESREVRLFLY----WK---RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF--NEILMGGLS 490 (843)
Q Consensus 435 CP~C~rAK~lL~----~l---GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI--nGk~IGG~D 490 (843)
+|-+.-+--+|. ++ .+.+..+|++.++. +...+|..++|++.+ ||+.+|-..
T Consensus 48 ~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~fgV~siPTLl~FkdGk~v~~i~ 108 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRFGVFRFPATLVFTGGNYRGVLN 108 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHcCCccCCEEEEEECCEEEEEEe
Confidence 566654444443 22 27788899987765 556789999998766 998886654
No 291
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=31.85 E-value=1.1e+02 Score=31.24 Aligned_cols=34 Identities=6% Similarity=-0.159 Sum_probs=22.5
Q ss_pred EEEEE--cCCChhHHHHH-------HHHHhcCCceEEEEcCCC
Q 003162 427 VILYT--RLGCQESREVR-------LFLYWKRLRYVEINIDVY 460 (843)
Q Consensus 427 VVIYT--k~gCP~C~rAK-------~lL~~lGI~YeeIDId~d 460 (843)
++||. ..|||.|..-. .-|.+.|+.+.-|.++..
T Consensus 34 vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~ 76 (187)
T TIGR03137 34 SVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTH 76 (187)
T ss_pred EEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCH
Confidence 44555 68999998633 334556888777776653
No 292
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=31.78 E-value=48 Score=39.50 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=43.3
Q ss_pred cCCCCCcCCCccc--EEEEEcCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 414 VKEPPQPLVMKGR--VILYTRLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 414 vk~~~~~~~Mkgk--VVIYTk~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
++.... .|+.+ +++|+.+.|++|..++++|... .|.++.+|...+.. +.+.+|...+|.+.|
T Consensus 357 l~~~~~--~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~----~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 357 LVGIFG--RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE----SETLPKITKLPTVAL 425 (555)
T ss_pred HHHHHH--hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh----hHhhcCCCcCCEEEE
Confidence 444444 24444 5568888999999999999873 57777888765433 334566667899887
No 293
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=30.82 E-value=1.6e+02 Score=27.24 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=47.1
Q ss_pred EEcCCChhHHHHHHHHHhcCC--ceEEEEcCCChhHHHHHHHHhC-----CCCcceEEEcCe-eeccchhHHHHHhcCcc
Q 003162 430 YTRLGCQESREVRLFLYWKRL--RYVEINIDVYPSRKMELEKFAG-----SSAVPKVFFNEI-LMGGLSELKALDESGKL 501 (843)
Q Consensus 430 YTk~gCP~C~rAK~lL~~lGI--~YeeIDId~d~e~rqELke~sG-----~~TVPqIFInGk-~IGG~DeL~el~esGeL 501 (843)
|.-..||+|....+++..+.. .+..+++...+.. ++.+..| ..+.-.+.-+|+ ...|.+-+..+...-..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~~~ 79 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ--ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRLPG 79 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh--hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHcCc
Confidence 445689999999999999864 5888888433321 1111111 233444434776 88999988887665332
Q ss_pred -hHHHHHH
Q 003162 502 -DEKIEYL 508 (843)
Q Consensus 502 -~~lLk~~ 508 (843)
-..+..+
T Consensus 80 ~~~~l~~l 87 (114)
T PF04134_consen 80 PWRWLAWL 87 (114)
T ss_pred chHHHHHH
Confidence 4444443
No 294
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=30.70 E-value=82 Score=37.27 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=48.0
Q ss_pred cCCChhHHHHHHHHHh--cCCc-eEEEEcCCChhH-HHHHHHH---hCC--CCcceEEE-------cCeeeccchhHHHH
Q 003162 432 RLGCQESREVRLFLYW--KRLR-YVEINIDVYPSR-KMELEKF---AGS--SAVPKVFF-------NEILMGGLSELKAL 495 (843)
Q Consensus 432 k~gCP~C~rAK~lL~~--lGI~-YeeIDId~d~e~-rqELke~---sG~--~TVPqIFI-------nGk~IGG~DeL~el 495 (843)
+..|||=.+|--+-+. +++| |..+-|...|+. .++|..+ .|| ..-|.|+= .|.++|||.+++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 4679998887665553 3555 888888877653 3455444 465 68899986 77999999999987
Q ss_pred Hh
Q 003162 496 DE 497 (843)
Q Consensus 496 ~e 497 (843)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 65
No 295
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=29.02 E-value=34 Score=33.83 Aligned_cols=55 Identities=24% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHhcCCceEEEEc-CCChhHHHHHHH------HhCCCCcceEEEcCe-eeccchhHHHH
Q 003162 441 VRLFLYWKRLRYVEINI-DVYPSRKMELEK------FAGSSAVPKVFFNEI-LMGGLSELKAL 495 (843)
Q Consensus 441 AK~lL~~lGI~YeeIDI-d~d~e~rqELke------~sG~~TVPqIFInGk-~IGG~DeL~el 495 (843)
..+++.+.|+.-..++- -.++..+..+.+ ..|...||.++|||+ .+-|.+.+-.+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 56677777775443331 234554444432 348999999999999 78887765443
No 296
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.28 E-value=60 Score=27.52 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=30.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 003162 427 VILYTRLGCQESREVRLFLYWKRLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk 484 (843)
+.||+...=--+..++.+|++.||++...|-....- .-. .|....+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~----~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY----AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh----hcc-cCccCceEEEECHH
Confidence 467887777789999999999999999887653222 111 34555589999875
No 297
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.58 E-value=33 Score=36.99 Aligned_cols=27 Identities=15% Similarity=0.021 Sum_probs=20.6
Q ss_pred CCcccEEEEEcCCChhHHHHHHHHHhc
Q 003162 422 VMKGRVILYTRLGCQESREVRLFLYWK 448 (843)
Q Consensus 422 ~MkgkVVIYTk~gCP~C~rAK~lL~~l 448 (843)
.|+.+|.||+-.-||||---++-|++.
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred CceEEEEEEeCCcCchhhcCHHHHHHH
Confidence 455569999999999997666666554
No 298
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=24.91 E-value=2.4e+02 Score=30.01 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHhCCCCcceE-EEcCeeeccchhHHHHHhcCcch---HHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 003162 466 ELEKFAGSSAVPKV-FFNEILMGGLSELKALDESGKLD---EKIEYLITEAPPFEAPLPPLSGEDDLS 529 (843)
Q Consensus 466 ELke~sG~~TVPqI-FInGk~IGG~DeL~el~esGeL~---~lLk~~~~~ap~~DaP~PPl~ge~~~S 529 (843)
+|.+..+.++||-| ||+++-.-|..++-++...-.++ .++....+.-...++|+|.....+...
T Consensus 104 ~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~~aD~g~~y~~~n~~~~~~~~~~~~sp~~~~~P~~~ 171 (207)
T KOG4700|consen 104 RLEESIGIGTVPEIKFVGDKALLMLQEMDKLLREADYGMDYRLLNKSARVLGNVKEESPNNRNVPRWL 171 (207)
T ss_pred HHHHHhccccCCceEEecchHHHHHHHHHHHHHHhccCcchhhhhHHHHhhcCCcCCCCCCCCCchHH
Confidence 33444467788765 77888777777766666655544 344444455455567777655444433
No 299
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.1e+02 Score=34.59 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=31.2
Q ss_pred cEEEEEcCCChhHHHHHHHHHhc------CCceEEEEcCCChhHHHHHHHHhCCCCcceEEE
Q 003162 426 RVILYTRLGCQESREVRLFLYWK------RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFF 481 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~l------GI~YeeIDId~d~e~rqELke~sG~~TVPqIFI 481 (843)
.++.|..|||++|+.....+.+. +..+....++.+ ....+....+.+.+|.+.+
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEE
Confidence 47888899999998774444332 233344444433 2233444456666776655
No 300
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=24.18 E-value=1.4e+02 Score=30.83 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=31.8
Q ss_pred EEE--EEcCCChhHHHH-------HHHHHhcCCceEEEEcCCChhHHHH---HHHHhC-CCCcceE
Q 003162 427 VIL--YTRLGCQESREV-------RLFLYWKRLRYVEINIDVYPSRKME---LEKFAG-SSAVPKV 479 (843)
Q Consensus 427 VVI--YTk~gCP~C~rA-------K~lL~~lGI~YeeIDId~d~e~rqE---Lke~sG-~~TVPqI 479 (843)
++| |...+||.|..- .+-|+++|+.+.-+.++.......+ +.+..+ ..++|.+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil 93 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPII 93 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEE
Confidence 444 557789999863 3445667888888888754443333 333322 3456633
No 301
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=24.13 E-value=1.6e+02 Score=27.96 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCcccEEEEEcCCChhHHHHHHHHHhcCCc-eEEEEcCCChhHHHHHHHHhCCCCcceEEEcCe
Q 003162 422 VMKGRVILYTRLGCQESREVRLFLYWKRLR-YVEINIDVYPSRKMELEKFAGSSAVPKVFFNEI 484 (843)
Q Consensus 422 ~MkgkVVIYTk~gCP~C~rAK~lL~~lGI~-YeeIDId~d~e~rqELke~sG~~TVPqIFInGk 484 (843)
..+++|+|..+..|++..+++.+ .+.|-. ...+|-.......-.+.......++|.++|...
T Consensus 41 ~~~GkIvLv~rg~c~f~~K~~~A-~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~ 103 (122)
T cd04816 41 DVKGAIVLVDRGGCPFADKQKVA-AARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKA 103 (122)
T ss_pred CcCCeEEEEECCCCCHHHHHHHH-HHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHH
Confidence 46789999999999999998864 555555 444443221110000100012356899998764
No 302
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.83 E-value=86 Score=32.44 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=16.4
Q ss_pred cccEEEEEcCCChhHHHHHH
Q 003162 424 KGRVILYTRLGCQESREVRL 443 (843)
Q Consensus 424 kgkVVIYTk~gCP~C~rAK~ 443 (843)
+..|+-|..-+||||.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34699999999999998654
No 303
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.83 E-value=1.1e+02 Score=31.50 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=23.5
Q ss_pred cEEEEEcCCChhHHHHHHHHHh----cCCceEEEEcC
Q 003162 426 RVILYTRLGCQESREVRLFLYW----KRLRYVEINID 458 (843)
Q Consensus 426 kVVIYTk~gCP~C~rAK~lL~~----lGI~YeeIDId 458 (843)
+|.+|+-.-||||--+++.|.+ .++++..+-+.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 5889999999999877666654 45555544443
No 304
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.73 E-value=1.4e+02 Score=36.43 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred hcccccCCCCCcCCCcccEEEEEcCCChhHHHHHHHHH--------hcCCceEEEEcCCC-hhHHHHHHHHhCCCCcceE
Q 003162 409 QRQEVVKEPPQPLVMKGRVILYTRLGCQESREVRLFLY--------WKRLRYVEINIDVY-PSRKMELEKFAGSSAVPKV 479 (843)
Q Consensus 409 ~~~e~vk~~~~~~~MkgkVVIYTk~gCP~C~rAK~lL~--------~lGI~YeeIDId~d-~e~rqELke~sG~~TVPqI 479 (843)
+.++.+.+.....+|- =|+..||--|+.-+++.- ..++-+-..|++.+ ++.++ +.++.|.-.+|.+
T Consensus 464 ~L~~~la~~~~~pVml----DfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~-lLk~~~~~G~P~~ 538 (569)
T COG4232 464 ELDQALAEAKAKPVML----DFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITA-LLKRLGVFGVPTY 538 (569)
T ss_pred HHHHHHHhCCCCcEEE----eeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHH-HHHHcCCCCCCEE
Confidence 3444444444333333 388999999997766653 35777788888754 55454 5555889999988
Q ss_pred EE
Q 003162 480 FF 481 (843)
Q Consensus 480 FI 481 (843)
.+
T Consensus 539 ~f 540 (569)
T COG4232 539 LF 540 (569)
T ss_pred EE
Confidence 76
No 305
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=20.68 E-value=30 Score=37.73 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=37.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh-------cCCceEEEEcCCChhHHHHHHHHhCCCCcceEE
Q 003162 427 VILYTRLGCQESREVRLFLYW-------KRLRYVEINIDVYPSRKMELEKFAGSSAVPKVF 480 (843)
Q Consensus 427 VVIYTk~gCP~C~rAK~lL~~-------lGI~YeeIDId~d~e~rqELke~sG~~TVPqIF 480 (843)
.++|..||||-|..-+..|.+ ++|.+-++|+..+|.+.= +.-.-..|+||
T Consensus 43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsG----RF~vtaLptIY 99 (248)
T KOG0913|consen 43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSG----RFLVTALPTIY 99 (248)
T ss_pred HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccce----eeEEEecceEE
Confidence 447889999999999999976 578899999998877321 11124678876
No 306
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=20.28 E-value=1.8e+02 Score=32.84 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=39.5
Q ss_pred cCCChhHHHHHHHHHhc-----CCceEEEEcCCChhHHHHHHHHhCCCCcceEEEcCeeeccchhHHH
Q 003162 432 RLGCQESREVRLFLYWK-----RLRYVEINIDVYPSRKMELEKFAGSSAVPKVFFNEILMGGLSELKA 494 (843)
Q Consensus 432 k~gCP~C~rAK~lL~~l-----GI~YeeIDId~d~e~rqELke~sG~~TVPqIFInGk~IGG~DeL~e 494 (843)
-.||+.|++++-+|+.+ .+.|.-+||+. +..+...+......+|.|-|.| .+|.|++...
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~~~~~p~l~v~~-l~gdy~~~l~ 146 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELPLGNFSHVRCAG-LLGTYDDGLA 146 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhhhccCCCeEEEE-EEecHHHHHh
Confidence 46899999999998876 35577777753 3333333322235689999887 5677765443
No 307
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=20.27 E-value=1.8e+02 Score=31.13 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=41.6
Q ss_pred CCCcccEEEEEcCCChhHHHHHHHHHhcCCceEEEEcC--CC-hhHHHHHHHHhCCCCcceEEEcCeee
Q 003162 421 LVMKGRVILYTRLGCQESREVRLFLYWKRLRYVEINID--VY-PSRKMELEKFAGSSAVPKVFFNEILM 486 (843)
Q Consensus 421 ~~MkgkVVIYTk~gCP~C~rAK~lL~~lGI~YeeIDId--~d-~e~rqELke~sG~~TVPqIFInGk~I 486 (843)
....+++.+|++..|+-|......|..-+-++..+=|. .+ ..++++- ....+|.-.|....|
T Consensus 106 ~~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA----~~~~Idp~~V~~~~I 170 (200)
T TIGR03759 106 LQGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWA----NRHQIDPAKVRSRQI 170 (200)
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHH----HHcCCCHHHeecCee
Confidence 34567899999999999998888888888888877776 22 2333332 234455555544433
Done!