Query 003163
Match_columns 843
No_of_seqs 547 out of 4024
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 2E-102 5E-107 936.6 71.6 675 49-841 1-680 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 2E-101 5E-106 925.2 71.8 663 49-842 1-669 (771)
3 COG1193 Mismatch repair ATPase 100.0 6E-87 1.3E-91 788.2 48.8 650 52-842 2-657 (753)
4 TIGR01070 mutS1 DNA mismatch r 100.0 5.4E-65 1.2E-69 615.9 45.9 506 47-641 249-780 (840)
5 PRK05399 DNA mismatch repair p 100.0 3.4E-62 7.3E-67 594.4 43.3 505 46-641 262-795 (854)
6 COG0249 MutS Mismatch repair A 100.0 2.3E-51 4.9E-56 493.0 39.9 511 47-641 260-795 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 2.2E-44 4.8E-49 404.5 32.5 517 47-638 458-1023(1070)
8 KOG0219 Mismatch repair ATPase 100.0 6.2E-40 1.3E-44 375.7 31.1 528 18-641 274-833 (902)
9 KOG0217 Mismatch repair ATPase 100.0 3.8E-38 8.3E-43 367.5 34.7 506 63-643 563-1090(1125)
10 PF00488 MutS_V: MutS domain V 100.0 1.3E-38 2.7E-43 335.7 16.8 200 440-641 28-231 (235)
11 KOG0221 Mismatch repair ATPase 100.0 2.7E-35 5.9E-40 327.6 34.5 540 10-639 220-790 (849)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1.7E-37 3.6E-42 323.4 15.0 193 441-635 16-218 (218)
13 cd03285 ABC_MSH2_euk MutS2 hom 100.0 8.9E-37 1.9E-41 319.2 17.9 198 441-640 16-219 (222)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 7.2E-37 1.6E-41 319.4 15.1 193 441-635 17-222 (222)
15 KOG0220 Mismatch repair ATPase 100.0 4.8E-35 1E-39 331.1 30.6 506 52-642 267-811 (867)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 4.3E-36 9.4E-41 312.8 16.8 196 441-638 17-215 (216)
17 cd03280 ABC_MutS2 MutS2 homolo 100.0 1.5E-35 3.3E-40 304.9 15.8 186 441-627 15-200 (200)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.3E-34 2.7E-39 301.3 15.3 185 441-627 15-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 4.4E-34 9.6E-39 295.2 16.4 185 441-627 15-204 (204)
20 smart00534 MUTSac ATPase domai 100.0 3.7E-33 8E-38 284.0 14.2 181 456-638 1-184 (185)
21 cd03243 ABC_MutS_homologs The 100.0 5.2E-33 1.1E-37 286.4 14.6 184 441-627 17-202 (202)
22 smart00533 MUTSd DNA-binding d 100.0 2E-31 4.4E-36 290.1 22.0 291 62-387 4-306 (308)
23 cd03283 ABC_MutS-like MutS-lik 100.0 2.8E-31 6.1E-36 273.4 16.2 183 441-627 13-199 (199)
24 COG1120 FepC ABC-type cobalami 99.9 6.8E-22 1.5E-26 209.2 13.7 158 440-599 13-221 (258)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 8.7E-22 1.9E-26 207.5 13.4 153 443-598 18-219 (254)
26 COG1126 GlnQ ABC-type polar am 99.9 2.5E-21 5.3E-26 197.1 12.7 157 440-599 13-218 (240)
27 COG1131 CcmA ABC-type multidru 99.9 3.3E-21 7.2E-26 209.9 14.1 157 441-599 17-219 (293)
28 PRK10636 putative ABC transpor 99.9 1.5E-20 3.2E-25 224.9 20.8 252 440-699 323-628 (638)
29 COG4152 ABC-type uncharacteriz 99.8 5.6E-21 1.2E-25 196.9 12.2 158 439-599 12-212 (300)
30 COG1127 Ttg2A ABC-type transpo 99.8 1.3E-20 2.8E-25 194.5 13.1 158 440-599 19-228 (263)
31 COG4555 NatA ABC-type Na+ tran 99.8 2.6E-20 5.6E-25 187.3 12.5 154 444-599 17-215 (245)
32 cd03214 ABC_Iron-Siderophores_ 99.8 4.2E-20 9.1E-25 187.1 13.8 153 442-597 12-178 (180)
33 PRK11147 ABC transporter ATPas 99.8 2.2E-19 4.9E-24 214.9 22.0 249 440-696 330-629 (635)
34 COG1116 TauB ABC-type nitrate/ 99.8 2.8E-20 6.1E-25 194.0 11.9 150 441-592 15-206 (248)
35 TIGR01188 drrA daunorubicin re 99.8 4.8E-20 1E-24 201.6 14.2 156 441-599 5-206 (302)
36 PRK13537 nodulation ABC transp 99.8 5.5E-20 1.2E-24 201.6 14.4 157 440-599 18-220 (306)
37 COG1136 SalX ABC-type antimicr 99.8 5.2E-20 1.1E-24 191.5 13.0 151 442-595 18-220 (226)
38 PRK13536 nodulation factor exp 99.8 6.3E-20 1.4E-24 203.8 14.2 158 440-599 52-254 (340)
39 cd03259 ABC_Carb_Solutes_like 99.8 1.3E-19 2.9E-24 187.8 14.2 154 441-597 12-211 (213)
40 COG1125 OpuBA ABC-type proline 99.8 9.1E-20 2E-24 189.1 11.8 157 440-597 12-216 (309)
41 COG3638 ABC-type phosphate/pho 99.8 1.5E-19 3.2E-24 186.3 13.3 159 440-600 15-231 (258)
42 cd03265 ABC_DrrA DrrA is the A 99.8 2E-19 4.3E-24 187.5 14.4 155 441-598 12-213 (220)
43 cd03226 ABC_cobalt_CbiO_domain 99.8 1.6E-19 3.5E-24 186.2 13.1 151 442-595 13-204 (205)
44 cd03268 ABC_BcrA_bacitracin_re 99.8 2.6E-19 5.7E-24 184.9 14.5 154 441-597 12-206 (208)
45 TIGR01288 nodI ATP-binding ABC 99.8 1.9E-19 4.1E-24 197.0 14.2 156 441-599 16-217 (303)
46 cd03216 ABC_Carb_Monos_I This 99.8 1.8E-19 4E-24 179.8 12.8 147 441-597 12-162 (163)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.7E-19 3.7E-24 187.5 13.0 150 442-594 17-217 (218)
48 cd03261 ABC_Org_Solvent_Resist 99.8 2.5E-19 5.3E-24 188.6 14.3 156 441-599 12-219 (235)
49 cd03293 ABC_NrtD_SsuB_transpor 99.8 2.6E-19 5.7E-24 186.6 14.3 154 442-598 17-215 (220)
50 cd03269 ABC_putative_ATPase Th 99.8 3.3E-19 7.1E-24 184.4 14.5 154 441-597 12-208 (210)
51 TIGR00960 3a0501s02 Type II (G 99.8 2.2E-19 4.7E-24 186.5 12.8 150 442-594 16-215 (216)
52 COG1137 YhbG ABC-type (unclass 99.8 2.6E-19 5.6E-24 180.0 12.7 157 440-599 15-221 (243)
53 PRK11247 ssuB aliphatic sulfon 99.8 3.9E-19 8.5E-24 190.3 15.0 156 441-599 24-216 (257)
54 TIGR02211 LolD_lipo_ex lipopro 99.8 3.1E-19 6.8E-24 185.9 13.7 151 442-595 18-219 (221)
55 cd03301 ABC_MalK_N The N-termi 99.8 4E-19 8.7E-24 184.0 14.4 154 441-597 12-211 (213)
56 cd03227 ABC_Class2 ABC-type Cl 99.8 1.6E-19 3.4E-24 180.1 10.7 132 443-591 11-154 (162)
57 cd03225 ABC_cobalt_CbiO_domain 99.8 2.8E-19 6.1E-24 184.9 12.9 149 442-593 14-210 (211)
58 cd03218 ABC_YhbG The ABC trans 99.8 3.9E-19 8.4E-24 186.5 14.0 155 441-598 12-214 (232)
59 COG0411 LivG ABC-type branched 99.8 2.5E-19 5.3E-24 185.8 11.8 157 440-599 15-232 (250)
60 cd03232 ABC_PDR_domain2 The pl 99.8 3.1E-19 6.8E-24 182.6 12.2 154 442-597 20-190 (192)
61 cd03238 ABC_UvrA The excision 99.8 1.8E-19 3.8E-24 182.4 10.2 148 441-595 7-166 (176)
62 TIGR03522 GldA_ABC_ATP gliding 99.8 4.8E-19 1E-23 193.7 14.2 155 441-599 14-214 (301)
63 cd03266 ABC_NatA_sodium_export 99.8 6.4E-19 1.4E-23 183.2 14.4 152 443-597 19-216 (218)
64 cd03219 ABC_Mj1267_LivG_branch 99.8 5.5E-19 1.2E-23 185.9 13.9 155 441-598 12-224 (236)
65 cd03235 ABC_Metallic_Cations A 99.8 4.6E-19 1E-23 183.7 13.1 152 441-595 11-210 (213)
66 cd03246 ABCC_Protease_Secretio 99.8 2.3E-19 5.1E-24 180.5 10.5 146 442-594 15-172 (173)
67 PRK11629 lolD lipoprotein tran 99.8 7.5E-19 1.6E-23 184.8 14.5 154 442-598 22-226 (233)
68 cd03256 ABC_PhnC_transporter A 99.8 7.1E-19 1.5E-23 185.5 14.4 154 442-598 14-226 (241)
69 cd03296 ABC_CysA_sulfate_impor 99.8 5.7E-19 1.2E-23 186.4 13.6 155 441-598 14-218 (239)
70 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 7.7E-19 1.7E-23 185.1 14.4 155 441-598 13-213 (236)
71 cd03258 ABC_MetN_methionine_tr 99.8 6.7E-19 1.5E-23 185.0 13.9 153 443-598 19-222 (233)
72 cd03267 ABC_NatA_like Similar 99.8 8.6E-19 1.9E-23 185.0 14.7 155 440-597 32-234 (236)
73 TIGR02315 ABC_phnC phosphonate 99.8 7.3E-19 1.6E-23 185.7 14.1 155 441-598 14-227 (243)
74 TIGR02673 FtsE cell division A 99.8 6E-19 1.3E-23 182.9 13.0 150 441-593 14-213 (214)
75 cd03292 ABC_FtsE_transporter F 99.8 6.7E-19 1.4E-23 182.4 13.3 150 442-594 14-213 (214)
76 PRK10584 putative ABC transpor 99.8 7.6E-19 1.6E-23 184.0 13.8 151 443-596 24-225 (228)
77 COG1122 CbiO ABC-type cobalt t 99.8 3.7E-19 8.1E-24 187.5 11.5 155 442-599 17-221 (235)
78 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 9.4E-19 2E-23 183.4 14.3 155 440-597 33-222 (224)
79 cd03294 ABC_Pro_Gly_Bertaine T 99.8 9.3E-19 2E-23 188.4 14.5 156 440-598 35-242 (269)
80 PRK09536 btuD corrinoid ABC tr 99.8 8E-19 1.7E-23 198.6 14.4 157 440-599 14-221 (402)
81 PRK11153 metN DL-methionine tr 99.8 8.7E-19 1.9E-23 195.1 14.5 154 442-598 18-222 (343)
82 PRK11248 tauB taurine transpor 99.8 1.3E-18 2.7E-23 186.1 15.1 155 441-598 13-212 (255)
83 PRK13647 cbiO cobalt transport 99.8 1.1E-18 2.5E-23 188.2 14.8 155 442-599 18-220 (274)
84 cd03224 ABC_TM1139_LivF_branch 99.8 1.2E-18 2.6E-23 181.5 14.4 155 441-598 12-213 (222)
85 PRK09493 glnQ glutamine ABC tr 99.8 1.2E-18 2.6E-23 184.0 14.6 155 441-598 13-217 (240)
86 TIGR03740 galliderm_ABC gallid 99.8 1.4E-18 3.1E-23 181.4 14.9 156 441-599 12-206 (223)
87 cd03230 ABC_DR_subfamily_A Thi 99.8 4.9E-19 1.1E-23 178.2 10.9 145 442-594 13-172 (173)
88 PRK13650 cbiO cobalt transport 99.8 1.2E-18 2.7E-23 188.4 14.8 155 442-599 20-222 (279)
89 cd03262 ABC_HisP_GlnQ_permease 99.8 8.4E-19 1.8E-23 181.5 12.7 151 441-594 12-212 (213)
90 cd03263 ABC_subfamily_A The AB 99.8 1.2E-18 2.7E-23 181.3 14.0 153 442-598 15-213 (220)
91 PRK11300 livG leucine/isoleuci 99.8 1.5E-18 3.3E-23 184.7 15.0 155 441-598 17-235 (255)
92 PRK13644 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 187.8 14.6 155 442-599 15-217 (274)
93 PRK13635 cbiO cobalt transport 99.8 1.4E-18 3E-23 188.1 14.8 155 442-599 20-222 (279)
94 cd03217 ABC_FeS_Assembly ABC-t 99.8 9.2E-19 2E-23 180.3 12.8 157 441-599 12-187 (200)
95 PRK11650 ugpC glycerol-3-phosp 99.8 1.3E-18 2.7E-23 194.6 14.9 156 441-599 16-217 (356)
96 TIGR02314 ABC_MetN D-methionin 99.8 1.3E-18 2.7E-23 193.5 14.7 154 442-598 18-222 (343)
97 cd03215 ABC_Carb_Monos_II This 99.8 5.7E-19 1.2E-23 179.1 11.0 147 444-594 15-181 (182)
98 cd03229 ABC_Class3 This class 99.8 5.2E-19 1.1E-23 178.8 10.4 149 441-593 12-177 (178)
99 PRK13638 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 187.3 13.9 156 441-599 13-218 (271)
100 PRK11264 putative amino-acid A 99.8 1.4E-18 3E-23 184.5 13.9 155 441-598 15-225 (250)
101 PRK11831 putative ABC transpor 99.8 1.8E-18 3.9E-23 186.1 14.9 155 441-598 19-225 (269)
102 PRK10908 cell division protein 99.8 1.5E-18 3.2E-23 181.2 13.9 153 441-596 14-216 (222)
103 PRK10895 lipopolysaccharide AB 99.8 1.8E-18 3.9E-23 182.8 14.5 155 441-598 15-218 (241)
104 PRK13641 cbiO cobalt transport 99.8 1.5E-18 3.2E-23 188.6 14.1 155 442-599 20-227 (287)
105 TIGR01186 proV glycine betaine 99.8 1.5E-18 3.2E-23 194.1 14.4 156 440-598 4-211 (363)
106 cd03213 ABCG_EPDR ABCG transpo 99.8 1E-18 2.2E-23 179.2 12.1 153 442-597 22-192 (194)
107 PRK13637 cbiO cobalt transport 99.8 1.5E-18 3.2E-23 188.7 14.0 156 442-599 20-227 (287)
108 PRK11614 livF leucine/isoleuci 99.8 1.7E-18 3.7E-23 182.5 14.1 155 441-598 17-218 (237)
109 PRK13548 hmuV hemin importer A 99.8 1.6E-18 3.5E-23 185.4 14.0 155 441-598 14-222 (258)
110 cd03264 ABC_drug_resistance_li 99.8 1.6E-18 3.4E-23 179.5 13.4 152 441-597 12-209 (211)
111 cd03223 ABCD_peroxisomal_ALDP 99.8 6.4E-19 1.4E-23 176.4 10.1 145 442-593 14-163 (166)
112 PRK11000 maltose/maltodextrin 99.8 1.6E-18 3.5E-23 194.6 14.5 155 441-599 15-216 (369)
113 PRK13651 cobalt transporter AT 99.8 1.2E-18 2.6E-23 190.9 13.0 154 443-599 21-247 (305)
114 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.9E-18 4.1E-23 178.9 13.8 148 447-597 16-209 (211)
115 TIGR01184 ntrCD nitrate transp 99.8 1.6E-18 3.4E-23 182.3 13.4 151 446-599 2-197 (230)
116 COG1118 CysA ABC-type sulfate/ 99.8 1.1E-18 2.4E-23 185.4 12.0 156 440-598 13-219 (345)
117 COG4586 ABC-type uncharacteriz 99.8 1.5E-18 3.3E-23 181.6 12.4 156 443-599 38-239 (325)
118 cd03260 ABC_PstB_phosphate_tra 99.8 2.3E-18 5.1E-23 180.2 14.0 155 441-598 12-221 (227)
119 TIGR03608 L_ocin_972_ABC putat 99.8 1.7E-18 3.7E-23 178.3 12.5 144 441-587 10-203 (206)
120 TIGR03411 urea_trans_UrtD urea 99.8 2.1E-18 4.6E-23 182.2 13.4 154 441-598 14-223 (242)
121 PRK09984 phosphonate/organopho 99.8 2.9E-18 6.4E-23 183.6 14.5 156 441-598 16-234 (262)
122 cd03297 ABC_ModC_molybdenum_tr 99.8 2.5E-18 5.5E-23 178.4 13.5 147 447-597 16-212 (214)
123 PRK11124 artP arginine transpo 99.8 3E-18 6.4E-23 181.2 14.3 156 441-599 14-223 (242)
124 PRK13643 cbiO cobalt transport 99.8 2.1E-18 4.6E-23 187.5 13.5 154 443-599 20-226 (288)
125 TIGR03410 urea_trans_UrtE urea 99.8 2.8E-18 6E-23 180.0 13.9 155 441-598 12-213 (230)
126 COG3842 PotA ABC-type spermidi 99.8 7.8E-19 1.7E-23 193.5 10.0 156 440-597 16-217 (352)
127 PRK13634 cbiO cobalt transport 99.8 2.6E-18 5.7E-23 186.9 14.1 155 442-599 20-228 (290)
128 cd03247 ABCC_cytochrome_bd The 99.8 1.3E-18 2.9E-23 175.7 10.8 148 443-597 16-176 (178)
129 TIGR03265 PhnT2 putative 2-ami 99.8 2.8E-18 6.2E-23 191.5 14.5 156 441-599 16-217 (353)
130 TIGR03005 ectoine_ehuA ectoine 99.8 4E-18 8.6E-23 181.4 14.9 155 441-598 12-228 (252)
131 TIGR01978 sufC FeS assembly AT 99.8 2.9E-18 6.2E-23 181.1 13.7 156 441-599 12-227 (243)
132 PRK11231 fecE iron-dicitrate t 99.8 3.7E-18 8.1E-23 182.1 14.7 155 441-598 14-219 (255)
133 TIGR03258 PhnT 2-aminoethylpho 99.8 2.9E-18 6.3E-23 191.9 14.5 156 441-599 17-221 (362)
134 cd03257 ABC_NikE_OppD_transpor 99.8 3.3E-18 7.1E-23 178.8 13.9 152 443-597 19-226 (228)
135 cd03295 ABC_OpuCA_Osmoprotecti 99.8 4.2E-18 9.1E-23 180.2 14.9 154 442-598 14-217 (242)
136 PRK10851 sulfate/thiosulfate t 99.8 2.6E-18 5.5E-23 191.9 13.8 155 441-599 14-219 (353)
137 COG1117 PstB ABC-type phosphat 99.8 1.8E-18 4E-23 175.6 11.4 155 440-597 18-228 (253)
138 PRK11432 fbpC ferric transport 99.8 3.4E-18 7.5E-23 190.7 14.6 155 441-599 18-219 (351)
139 TIGR03873 F420-0_ABC_ATP propo 99.8 3.5E-18 7.5E-23 182.4 13.9 156 441-599 13-219 (256)
140 PRK09544 znuC high-affinity zi 99.8 4.7E-18 1E-22 181.3 14.7 152 441-596 16-199 (251)
141 PRK13632 cbiO cobalt transport 99.8 4.4E-18 9.5E-23 183.4 14.6 155 441-598 21-223 (271)
142 PRK09452 potA putrescine/sperm 99.8 4.2E-18 9E-23 191.4 14.9 155 441-599 26-227 (375)
143 PRK13636 cbiO cobalt transport 99.8 4.2E-18 9.1E-23 184.7 14.5 156 441-599 18-224 (283)
144 PRK13633 cobalt transporter AT 99.8 4.3E-18 9.2E-23 184.3 14.5 155 442-599 23-226 (280)
145 PRK10619 histidine/lysine/argi 99.8 4.8E-18 1E-22 181.4 14.7 155 441-598 17-233 (257)
146 PRK10070 glycine betaine trans 99.8 3.6E-18 7.9E-23 193.1 14.4 156 440-598 39-246 (400)
147 PRK10253 iron-enterobactin tra 99.8 4.4E-18 9.6E-23 182.7 14.4 155 441-598 19-225 (265)
148 COG2884 FtsE Predicted ATPase 99.8 4.2E-18 9E-23 170.2 13.0 157 440-599 13-219 (223)
149 cd03228 ABCC_MRP_Like The MRP 99.8 1.5E-18 3.2E-23 174.4 10.0 143 443-593 16-170 (171)
150 PRK13546 teichoic acids export 99.8 4.1E-18 8.9E-23 183.1 14.1 155 440-597 35-223 (264)
151 PRK13646 cbiO cobalt transport 99.8 3.6E-18 7.9E-23 185.5 13.8 155 442-599 20-228 (286)
152 PRK13652 cbiO cobalt transport 99.8 5.2E-18 1.1E-22 183.4 14.8 155 442-599 17-220 (277)
153 PRK10575 iron-hydroxamate tran 99.8 3.4E-18 7.3E-23 183.6 13.3 155 441-598 23-229 (265)
154 PRK14250 phosphate ABC transpo 99.8 5.4E-18 1.2E-22 179.5 14.6 154 441-598 15-213 (241)
155 PRK13640 cbiO cobalt transport 99.8 4.9E-18 1.1E-22 184.1 14.6 156 442-599 20-225 (282)
156 PRK13648 cbiO cobalt transport 99.8 4.5E-18 9.8E-23 183.0 14.1 155 442-599 22-224 (269)
157 PRK10938 putative molybdenum t 99.8 3.2E-18 6.9E-23 199.1 13.9 155 441-598 15-216 (490)
158 cd03245 ABCC_bacteriocin_expor 99.8 3.7E-18 8E-23 177.7 12.8 151 442-597 17-218 (220)
159 TIGR02770 nickel_nikD nickel i 99.8 4.7E-18 1E-22 178.6 13.7 152 445-598 2-207 (230)
160 PRK13649 cbiO cobalt transport 99.8 4.9E-18 1.1E-22 183.7 14.0 154 442-598 20-226 (280)
161 COG1135 AbcC ABC-type metal io 99.8 4.2E-18 9.2E-23 181.5 13.2 156 442-599 19-224 (339)
162 TIGR02769 nickel_nikE nickel i 99.8 5.2E-18 1.1E-22 182.1 14.1 155 441-598 23-232 (265)
163 TIGR01277 thiQ thiamine ABC tr 99.8 6.9E-18 1.5E-22 175.2 14.5 151 445-598 14-210 (213)
164 PRK03695 vitamin B12-transport 99.8 5E-18 1.1E-22 180.6 13.8 151 444-598 11-214 (248)
165 PRK11701 phnK phosphonate C-P 99.8 7.1E-18 1.5E-22 180.2 14.4 157 441-599 18-234 (258)
166 PRK13645 cbiO cobalt transport 99.8 6.1E-18 1.3E-22 183.8 14.1 153 443-598 25-232 (289)
167 TIGR01166 cbiO cobalt transpor 99.8 3.9E-18 8.4E-23 173.9 11.8 137 441-580 4-189 (190)
168 PRK13639 cbiO cobalt transport 99.8 6.6E-18 1.4E-22 182.4 14.2 155 442-599 15-219 (275)
169 TIGR03415 ABC_choXWV_ATP choli 99.8 6.3E-18 1.4E-22 190.0 14.6 155 440-598 35-246 (382)
170 PRK10418 nikD nickel transport 99.8 7.2E-18 1.6E-22 179.9 14.3 155 442-598 16-222 (254)
171 PRK11607 potG putrescine trans 99.8 6.6E-18 1.4E-22 190.1 14.7 156 441-599 31-232 (377)
172 PRK15439 autoinducer 2 ABC tra 99.8 5.3E-18 1.2E-22 198.2 14.5 155 441-598 23-221 (510)
173 PRK15056 manganese/iron transp 99.8 8E-18 1.7E-22 181.4 14.7 155 441-598 19-222 (272)
174 PRK10771 thiQ thiamine transpo 99.8 6E-18 1.3E-22 177.9 13.2 149 447-598 17-211 (232)
175 TIGR00968 3a0106s01 sulfate AB 99.8 9.3E-18 2E-22 177.2 14.7 155 441-598 12-212 (237)
176 TIGR02982 heterocyst_DevA ABC 99.8 8E-18 1.7E-22 175.6 14.0 151 442-595 18-219 (220)
177 PRK15177 Vi polysaccharide exp 99.8 6.2E-18 1.3E-22 176.0 13.0 153 443-599 1-185 (213)
178 PRK15112 antimicrobial peptide 99.7 8E-18 1.7E-22 180.9 14.2 154 442-598 26-231 (267)
179 cd03252 ABCC_Hemolysin The ABC 99.7 6.1E-18 1.3E-22 178.2 13.0 154 442-599 15-218 (237)
180 TIGR02323 CP_lyasePhnK phospho 99.7 9E-18 1.9E-22 178.7 14.3 155 441-598 15-230 (253)
181 PRK14268 phosphate ABC transpo 99.7 1.1E-17 2.4E-22 178.8 14.5 155 441-598 24-234 (258)
182 TIGR00972 3a0107s01c2 phosphat 99.7 1E-17 2.2E-22 177.8 14.1 154 441-598 13-224 (247)
183 TIGR03269 met_CoM_red_A2 methy 99.7 7.9E-18 1.7E-22 197.2 14.5 156 441-598 12-250 (520)
184 PRK10762 D-ribose transporter 99.7 6.9E-18 1.5E-22 196.8 13.8 155 441-598 16-222 (501)
185 cd03300 ABC_PotA_N PotA is an 99.7 1.1E-17 2.3E-22 176.1 13.9 155 441-598 12-212 (232)
186 PRK13549 xylose transporter AT 99.7 6.6E-18 1.4E-22 197.2 13.6 156 441-598 17-224 (506)
187 COG3839 MalK ABC-type sugar tr 99.7 6.6E-18 1.4E-22 185.3 12.6 154 444-598 18-215 (338)
188 cd03234 ABCG_White The White s 99.7 9.3E-18 2E-22 175.8 13.2 154 442-597 20-224 (226)
189 TIGR02142 modC_ABC molybdenum 99.7 1E-17 2.2E-22 187.4 14.2 149 447-598 15-213 (354)
190 cd03233 ABC_PDR_domain1 The pl 99.7 9.4E-18 2E-22 173.2 12.6 156 441-597 19-200 (202)
191 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 8.6E-18 1.9E-22 177.2 12.4 153 442-598 16-218 (238)
192 PRK09700 D-allose transporter 99.7 1E-17 2.2E-22 195.9 14.3 155 441-598 17-226 (510)
193 PRK13547 hmuV hemin importer A 99.7 1.1E-17 2.4E-22 180.6 13.5 156 441-598 13-236 (272)
194 PRK13545 tagH teichoic acids e 99.7 1.1E-17 2.3E-22 192.6 14.0 154 442-598 37-224 (549)
195 COG4559 ABC-type hemin transpo 99.7 9.3E-18 2E-22 170.2 11.8 158 440-599 12-223 (259)
196 cd03250 ABCC_MRP_domain1 Domai 99.7 8.8E-18 1.9E-22 173.1 12.0 149 443-593 19-203 (204)
197 PRK09580 sufC cysteine desulfu 99.7 1.4E-17 3.1E-22 176.5 13.9 156 441-598 13-227 (248)
198 PRK10247 putative ABC transpor 99.7 1.2E-17 2.6E-22 175.0 13.2 148 441-591 19-211 (225)
199 PRK13543 cytochrome c biogenes 99.7 1.1E-17 2.5E-22 173.9 12.8 147 441-590 23-210 (214)
200 PRK11144 modC molybdate transp 99.7 1.2E-17 2.6E-22 186.6 13.8 148 447-598 16-210 (352)
201 PRK13538 cytochrome c biogenes 99.7 9.4E-18 2E-22 173.1 11.9 141 441-584 13-195 (204)
202 COG3840 ThiQ ABC-type thiamine 99.7 1.1E-17 2.4E-22 166.0 11.8 155 444-600 14-213 (231)
203 PRK13631 cbiO cobalt transport 99.7 1.5E-17 3.3E-22 183.4 14.2 155 442-599 39-258 (320)
204 PRK14242 phosphate transporter 99.7 1.1E-17 2.4E-22 178.0 12.7 154 441-598 18-229 (253)
205 COG1119 ModF ABC-type molybden 99.7 6.5E-18 1.4E-22 175.4 10.4 160 439-598 41-254 (257)
206 PRK10636 putative ABC transpor 99.7 5.6E-17 1.2E-21 194.3 20.0 151 440-596 12-225 (638)
207 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.5E-18 1.8E-22 164.6 10.6 128 442-593 13-143 (144)
208 cd03253 ABCC_ATM1_transporter 99.7 1.4E-17 3.1E-22 175.2 12.9 152 442-598 14-216 (236)
209 PRK10744 pstB phosphate transp 99.7 1.4E-17 3.1E-22 178.2 13.1 156 441-599 25-237 (260)
210 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.6E-17 3.4E-22 176.8 13.3 146 444-592 9-191 (246)
211 COG0410 LivF ABC-type branched 99.7 2E-17 4.4E-22 170.5 13.6 157 440-599 14-219 (237)
212 PRK14248 phosphate ABC transpo 99.7 1.4E-17 3E-22 179.0 12.9 155 441-599 33-245 (268)
213 CHL00131 ycf16 sulfate ABC tra 99.7 1.4E-17 3.1E-22 177.0 12.9 156 441-599 19-234 (252)
214 PRK13642 cbiO cobalt transport 99.7 2.4E-17 5.1E-22 178.3 14.7 154 442-598 20-221 (277)
215 PRK11022 dppD dipeptide transp 99.7 2.1E-17 4.6E-22 182.8 14.5 155 442-598 20-235 (326)
216 cd03244 ABCC_MRP_domain2 Domai 99.7 1.6E-17 3.5E-22 173.0 12.9 152 442-598 17-218 (221)
217 cd03254 ABCC_Glucan_exporter_l 99.7 1.7E-17 3.7E-22 173.8 13.1 152 442-598 16-218 (229)
218 COG4604 CeuD ABC-type enteroch 99.7 1.2E-17 2.7E-22 167.6 11.2 158 440-599 12-218 (252)
219 PRK13549 xylose transporter AT 99.7 1.3E-17 2.7E-22 194.9 13.3 156 442-599 275-487 (506)
220 PRK14245 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 176.4 13.1 155 441-598 15-226 (250)
221 PRK15079 oligopeptide ABC tran 99.7 2.5E-17 5.5E-22 182.5 14.9 154 442-598 34-243 (331)
222 cd03222 ABC_RNaseL_inhibitor T 99.7 6.5E-18 1.4E-22 171.2 9.3 133 441-593 12-148 (177)
223 PRK13539 cytochrome c biogenes 99.7 1.6E-17 3.6E-22 171.8 12.4 146 441-590 14-198 (207)
224 cd03290 ABCC_SUR1_N The SUR do 99.7 1.8E-17 3.8E-22 172.6 12.7 149 442-593 14-217 (218)
225 PRK14247 phosphate ABC transpo 99.7 2.2E-17 4.7E-22 175.5 13.5 155 441-598 15-226 (250)
226 PRK14269 phosphate ABC transpo 99.7 1.9E-17 4.1E-22 175.7 13.1 155 441-598 14-222 (246)
227 PRK10419 nikE nickel transport 99.7 2.6E-17 5.6E-22 177.2 14.2 156 441-599 24-234 (268)
228 cd03251 ABCC_MsbA MsbA is an e 99.7 1.5E-17 3.3E-22 174.7 12.1 151 443-598 16-217 (234)
229 COG0488 Uup ATPase components 99.7 7.7E-17 1.7E-21 187.4 19.0 148 440-594 14-227 (530)
230 PRK14235 phosphate transporter 99.7 3.1E-17 6.6E-22 176.4 14.6 156 441-599 31-244 (267)
231 TIGR02633 xylG D-xylose ABC tr 99.7 1.4E-17 3E-22 194.2 12.9 156 442-599 273-485 (500)
232 PRK14244 phosphate ABC transpo 99.7 2.3E-17 4.9E-22 175.5 13.3 154 441-598 17-229 (251)
233 cd03248 ABCC_TAP TAP, the Tran 99.7 1.3E-17 2.9E-22 174.4 11.3 148 442-594 27-225 (226)
234 PRK10982 galactose/methyl gala 99.7 1.9E-17 4.2E-22 192.6 13.8 155 441-598 10-215 (491)
235 PRK14273 phosphate ABC transpo 99.7 2.8E-17 6E-22 175.2 13.7 156 441-599 19-231 (254)
236 PRK15093 antimicrobial peptide 99.7 3.5E-17 7.6E-22 181.3 14.9 155 442-598 20-240 (330)
237 COG1124 DppF ABC-type dipeptid 99.7 3.2E-17 6.8E-22 170.2 13.4 155 443-599 21-224 (252)
238 PRK14267 phosphate ABC transpo 99.7 2.8E-17 6E-22 175.0 13.3 155 441-598 16-229 (253)
239 PRK14275 phosphate ABC transpo 99.7 4E-17 8.7E-22 177.4 14.7 155 441-599 51-263 (286)
240 PRK14274 phosphate ABC transpo 99.7 2.8E-17 6.1E-22 175.7 13.2 156 441-599 24-236 (259)
241 cd03299 ABC_ModC_like Archeal 99.7 4.4E-17 9.4E-22 171.9 14.4 152 444-598 14-211 (235)
242 PRK11308 dppF dipeptide transp 99.7 3.8E-17 8.2E-22 180.8 14.5 154 442-598 28-236 (327)
243 TIGR02633 xylG D-xylose ABC tr 99.7 2.4E-17 5.1E-22 192.3 13.5 156 441-598 13-222 (500)
244 PRK11288 araG L-arabinose tran 99.7 2E-17 4.2E-22 193.1 12.5 154 443-599 267-478 (501)
245 PRK14237 phosphate transporter 99.7 4.6E-17 1E-21 175.0 14.4 155 441-599 32-244 (267)
246 PRK11288 araG L-arabinose tran 99.7 2.7E-17 5.9E-22 191.8 13.5 155 441-598 16-221 (501)
247 PRK14251 phosphate ABC transpo 99.7 5.3E-17 1.2E-21 172.6 14.4 155 441-598 16-227 (251)
248 PRK14239 phosphate transporter 99.7 5.4E-17 1.2E-21 172.5 14.5 156 441-599 17-229 (252)
249 PRK09700 D-allose transporter 99.7 2E-17 4.4E-22 193.3 12.3 153 444-598 278-490 (510)
250 PRK15134 microcin C ABC transp 99.7 2.7E-17 5.8E-22 193.2 13.0 154 442-599 299-508 (529)
251 PRK14270 phosphate ABC transpo 99.7 6.2E-17 1.3E-21 172.2 14.5 155 441-599 16-228 (251)
252 PRK14241 phosphate transporter 99.7 4.2E-17 9.2E-22 174.3 13.1 155 441-598 16-234 (258)
253 PRK14262 phosphate ABC transpo 99.7 6.7E-17 1.4E-21 171.7 14.4 156 441-599 15-227 (250)
254 cd03231 ABC_CcmA_heme_exporter 99.7 4.8E-17 1E-21 167.6 12.9 144 441-587 12-195 (201)
255 PRK10938 putative molybdenum t 99.7 2.6E-17 5.6E-22 191.5 12.1 158 441-599 272-485 (490)
256 PRK13540 cytochrome c biogenes 99.7 4.9E-17 1.1E-21 167.3 12.8 143 441-586 13-195 (200)
257 TIGR03269 met_CoM_red_A2 methy 99.7 4.9E-17 1.1E-21 190.5 14.6 154 442-598 297-509 (520)
258 TIGR01189 ccmA heme ABC export 99.7 4.6E-17 1E-21 167.1 12.4 136 441-579 12-188 (198)
259 PRK14240 phosphate transporter 99.7 6E-17 1.3E-21 172.1 13.7 156 441-599 15-227 (250)
260 cd00267 ABC_ATPase ABC (ATP-bi 99.7 4.6E-17 9.9E-22 161.0 11.8 140 442-593 12-156 (157)
261 PRK15439 autoinducer 2 ABC tra 99.7 3.2E-17 6.8E-22 191.8 12.5 153 444-598 278-484 (510)
262 PRK15134 microcin C ABC transp 99.7 5.1E-17 1.1E-21 190.8 14.1 155 442-598 22-238 (529)
263 cd03291 ABCC_CFTR1 The CFTR su 99.7 5.7E-17 1.2E-21 175.9 13.2 154 442-598 50-239 (282)
264 PRK14256 phosphate ABC transpo 99.7 7.6E-17 1.7E-21 171.6 14.0 155 441-598 16-228 (252)
265 PRK15064 ABC transporter ATP-b 99.7 4.7E-17 1E-21 191.1 13.5 150 441-596 13-231 (530)
266 TIGR02324 CP_lyasePhnL phospho 99.7 5.7E-17 1.2E-21 169.4 12.7 145 442-590 21-222 (224)
267 PRK09473 oppD oligopeptide tra 99.7 7.2E-17 1.6E-21 178.8 14.0 155 442-598 29-243 (330)
268 cd03369 ABCC_NFT1 Domain 2 of 99.7 3.7E-17 8E-22 168.9 10.9 151 442-597 21-203 (207)
269 PRK10982 galactose/methyl gala 99.7 4.2E-17 9E-22 189.8 12.7 153 443-597 262-471 (491)
270 PRK14255 phosphate ABC transpo 99.7 6.1E-17 1.3E-21 172.2 12.8 155 441-599 17-229 (252)
271 PRK14254 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 175.6 13.2 154 441-598 51-261 (285)
272 COG0396 sufC Cysteine desulfur 99.7 4.7E-17 1E-21 167.3 11.2 156 442-599 17-227 (251)
273 PRK14265 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 174.6 13.0 154 441-598 32-250 (274)
274 PRK13541 cytochrome c biogenes 99.7 6.4E-17 1.4E-21 165.8 12.2 141 442-586 14-191 (195)
275 TIGR03771 anch_rpt_ABC anchore 99.7 6.2E-17 1.3E-21 169.5 12.2 144 452-598 4-193 (223)
276 PRK14261 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 170.2 14.5 154 441-598 18-229 (253)
277 PRK14253 phosphate ABC transpo 99.7 1E-16 2.3E-21 170.2 14.0 154 441-598 15-225 (249)
278 PRK14249 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 170.0 14.2 154 441-598 16-227 (251)
279 COG1134 TagH ABC-type polysacc 99.7 7.2E-17 1.6E-21 167.8 12.1 158 440-600 38-230 (249)
280 PRK14259 phosphate ABC transpo 99.7 1E-16 2.2E-21 172.7 13.6 148 441-592 25-228 (269)
281 PRK10762 D-ribose transporter 99.7 6.4E-17 1.4E-21 188.7 13.0 154 444-599 267-477 (501)
282 PRK14272 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 170.3 13.5 156 441-599 16-229 (252)
283 PRK14246 phosphate ABC transpo 99.7 1.3E-16 2.9E-21 170.7 14.3 156 440-598 21-233 (257)
284 COG4619 ABC-type uncharacteriz 99.7 8.3E-17 1.8E-21 158.0 11.3 156 439-596 13-213 (223)
285 PRK14238 phosphate transporter 99.7 1.3E-16 2.9E-21 171.9 14.1 154 441-598 36-247 (271)
286 cd03289 ABCC_CFTR2 The CFTR su 99.7 1E-16 2.2E-21 173.3 13.2 152 441-598 16-217 (275)
287 PRK10261 glutathione transport 99.7 1.1E-16 2.3E-21 191.5 14.7 155 442-598 337-545 (623)
288 PRK15064 ABC transporter ATP-b 99.7 6.8E-17 1.5E-21 189.8 12.6 150 441-596 331-514 (530)
289 COG0488 Uup ATPase components 99.7 5E-16 1.1E-20 180.7 19.4 145 441-592 334-511 (530)
290 PRK14271 phosphate ABC transpo 99.7 1.2E-16 2.6E-21 172.8 13.2 156 440-598 32-243 (276)
291 PRK10261 glutathione transport 99.7 1E-16 2.2E-21 191.7 13.7 155 442-598 29-250 (623)
292 PRK14236 phosphate transporter 99.7 1.2E-16 2.6E-21 172.3 12.9 154 441-598 37-248 (272)
293 PRK14258 phosphate ABC transpo 99.7 2.1E-16 4.6E-21 169.3 14.4 155 441-598 19-237 (261)
294 PRK11147 ABC transporter ATPas 99.7 7.7E-16 1.7E-20 184.6 20.7 149 440-596 14-232 (635)
295 cd03270 ABC_UvrA_I The excisio 99.7 1.3E-16 2.8E-21 167.7 12.2 86 511-598 131-225 (226)
296 COG4598 HisP ABC-type histidin 99.7 1.2E-16 2.7E-21 158.1 11.1 157 440-598 17-233 (256)
297 TIGR01257 rim_protein retinal- 99.7 1.5E-16 3.2E-21 206.1 14.7 156 442-599 1952-2152(2272)
298 cd03288 ABCC_SUR2 The SUR doma 99.7 1.9E-16 4.1E-21 169.3 12.6 152 442-598 34-235 (257)
299 PRK14260 phosphate ABC transpo 99.7 2E-16 4.3E-21 169.3 12.7 155 441-598 19-235 (259)
300 PRK14263 phosphate ABC transpo 99.7 3.4E-16 7.3E-21 167.9 14.4 156 440-598 19-237 (261)
301 PRK14264 phosphate ABC transpo 99.7 2.2E-16 4.7E-21 173.2 13.0 155 441-598 57-281 (305)
302 PLN03073 ABC transporter F fam 99.7 1.6E-16 3.4E-21 191.9 12.8 150 441-596 521-703 (718)
303 PRK14252 phosphate ABC transpo 99.7 2.8E-16 6.2E-21 168.6 13.4 154 441-598 28-241 (265)
304 PRK11819 putative ABC transpor 99.7 9.9E-17 2.1E-21 189.5 10.7 149 441-596 19-239 (556)
305 PRK14266 phosphate ABC transpo 99.7 4.2E-16 9E-21 165.7 14.3 155 441-599 15-227 (250)
306 COG4181 Predicted ABC-type tra 99.7 2.3E-16 5E-21 155.3 11.2 158 440-598 21-227 (228)
307 COG4133 CcmA ABC-type transpor 99.7 2.3E-16 4.9E-21 157.8 11.3 136 440-578 13-190 (209)
308 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.7E-16 3.6E-21 169.9 11.0 149 443-595 15-216 (255)
309 PRK14243 phosphate transporter 99.7 3.5E-16 7.5E-21 168.0 13.4 154 441-598 22-240 (264)
310 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.4E-16 3E-21 188.1 11.0 149 441-596 17-237 (552)
311 PRK13409 putative ATPase RIL; 99.7 3.9E-16 8.5E-21 185.1 13.9 150 444-597 354-533 (590)
312 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3.1E-16 6.7E-21 185.1 12.7 147 441-593 334-516 (552)
313 TIGR01257 rim_protein retinal- 99.7 3.3E-16 7.1E-21 203.0 13.8 156 441-599 942-1142(2272)
314 PRK11819 putative ABC transpor 99.7 4.3E-16 9.3E-21 184.1 12.8 149 441-595 336-521 (556)
315 PRK14257 phosphate ABC transpo 99.7 7.1E-16 1.5E-20 170.8 13.4 157 440-599 93-306 (329)
316 PLN03073 ABC transporter F fam 99.6 3.9E-15 8.5E-20 179.8 20.4 80 512-596 339-420 (718)
317 PLN03211 ABC transporter G-25; 99.6 5.8E-16 1.2E-20 185.8 13.1 158 440-599 79-289 (659)
318 COG4175 ProV ABC-type proline/ 99.6 8.3E-16 1.8E-20 164.0 12.7 157 440-598 39-246 (386)
319 COG1129 MglA ABC-type sugar tr 99.6 7E-16 1.5E-20 176.0 12.7 157 440-598 19-226 (500)
320 COG4161 ArtP ABC-type arginine 99.6 1E-15 2.2E-20 149.3 11.8 159 440-601 13-225 (242)
321 COG4525 TauB ABC-type taurine 99.6 1.1E-15 2.3E-20 153.5 11.4 148 442-590 18-206 (259)
322 PRK13409 putative ATPase RIL; 99.6 7.8E-16 1.7E-20 182.5 12.0 147 442-592 87-286 (590)
323 TIGR01187 potA spermidine/putr 99.6 9.2E-16 2E-20 169.7 11.2 92 505-598 88-182 (325)
324 PRK10535 macrolide transporter 99.6 1.8E-15 4E-20 181.7 14.6 155 442-599 21-225 (648)
325 COG4674 Uncharacterized ABC-ty 99.6 1.4E-15 3.1E-20 152.7 11.2 155 440-598 16-227 (249)
326 COG1123 ATPase components of v 99.6 1.4E-15 2.9E-20 174.8 12.3 156 442-599 22-237 (539)
327 PRK10522 multidrug transporter 99.6 2.7E-15 5.9E-20 176.9 14.4 155 441-598 335-530 (547)
328 COG1101 PhnK ABC-type uncharac 99.6 2.2E-15 4.8E-20 153.4 11.2 158 441-600 18-232 (263)
329 COG0444 DppD ABC-type dipeptid 99.6 2.3E-15 4.9E-20 162.5 11.8 156 442-599 18-236 (316)
330 TIGR01842 type_I_sec_PrtD type 99.6 2.3E-15 4.9E-20 177.5 13.0 154 441-598 330-534 (544)
331 cd03278 ABC_SMC_barmotin Barmo 99.6 1.8E-15 3.9E-20 155.9 10.6 138 446-590 14-188 (197)
332 COG4148 ModC ABC-type molybdat 99.6 2.1E-15 4.5E-20 158.5 11.0 151 445-598 14-210 (352)
333 TIGR00955 3a01204 The Eye Pigm 99.6 2.2E-15 4.7E-20 180.1 12.6 158 440-599 36-249 (617)
334 PRK13657 cyclic beta-1,2-gluca 99.6 4.1E-15 8.9E-20 176.8 13.5 153 441-597 347-549 (588)
335 COG3845 ABC-type uncharacteriz 99.6 2.9E-15 6.4E-20 168.1 11.2 154 440-596 15-219 (501)
336 PRK11174 cysteine/glutathione 99.6 4.3E-15 9.3E-20 176.6 13.2 153 440-598 361-564 (588)
337 COG2274 SunT ABC-type bacterio 99.6 2.5E-15 5.4E-20 180.2 10.9 155 440-599 484-689 (709)
338 TIGR00954 3a01203 Peroxysomal 99.6 3.6E-15 7.8E-20 179.4 12.2 145 441-591 464-652 (659)
339 cd03279 ABC_sbcCD SbcCD and ot 99.6 4E-15 8.7E-20 154.8 10.8 147 446-594 18-210 (213)
340 TIGR01194 cyc_pep_trnsptr cycl 99.6 6.2E-15 1.3E-19 174.2 13.7 153 443-598 356-551 (555)
341 COG1123 ATPase components of v 99.6 7.9E-15 1.7E-19 168.5 14.0 157 441-599 303-512 (539)
342 COG4988 CydD ABC-type transpor 99.6 2.5E-15 5.3E-20 172.1 9.6 154 442-599 334-536 (559)
343 TIGR01192 chvA glucan exporter 99.6 6.5E-15 1.4E-19 175.1 13.2 152 442-598 348-550 (585)
344 COG4107 PhnK ABC-type phosphon 99.6 1.1E-14 2.4E-19 143.7 12.4 156 440-598 17-233 (258)
345 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 1.1E-14 2.4E-19 176.2 14.5 153 440-599 464-666 (686)
346 TIGR02203 MsbA_lipidA lipid A 99.6 9E-15 1.9E-19 173.1 13.0 154 441-597 344-547 (571)
347 PRK10789 putative multidrug tr 99.6 8.7E-15 1.9E-19 173.5 12.8 153 441-598 327-530 (569)
348 PRK11160 cysteine/glutathione 99.6 1.1E-14 2.4E-19 172.8 13.6 152 442-598 353-554 (574)
349 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 9.3E-15 2E-19 177.5 13.2 152 441-599 491-693 (710)
350 PRK10790 putative multidrug tr 99.6 1.3E-14 2.7E-19 172.8 14.0 153 441-598 353-555 (592)
351 TIGR03375 type_I_sec_LssB type 99.6 1.2E-14 2.6E-19 176.1 14.0 153 441-598 477-680 (694)
352 PRK11176 lipid transporter ATP 99.6 1E-14 2.2E-19 173.2 13.1 153 441-598 355-559 (582)
353 KOG0927 Predicted transporter 99.6 3.8E-15 8.2E-20 168.0 8.5 148 443-597 404-586 (614)
354 PLN03140 ABC transporter G fam 99.6 9.1E-15 2E-19 187.9 12.9 157 441-599 892-1103(1470)
355 cd03271 ABC_UvrA_II The excisi 99.6 1.7E-14 3.6E-19 154.7 12.9 93 504-598 155-258 (261)
356 TIGR02204 MsbA_rel ABC transpo 99.6 1.1E-14 2.4E-19 172.5 11.5 152 442-598 353-555 (576)
357 KOG0059 Lipid exporter ABCA1 a 99.5 1.4E-14 3.1E-19 179.1 12.4 153 444-598 580-779 (885)
358 COG4987 CydC ABC-type transpor 99.5 1.7E-14 3.8E-19 163.1 11.6 167 430-600 339-555 (573)
359 COG4608 AppF ABC-type oligopep 99.5 2E-14 4.4E-19 152.2 11.3 154 443-599 27-192 (268)
360 TIGR01193 bacteriocin_ABC ABC- 99.5 2.3E-14 4.9E-19 174.1 13.4 152 441-598 486-689 (708)
361 cd03274 ABC_SMC4_euk Eukaryoti 99.5 8.3E-15 1.8E-19 152.7 8.0 77 512-591 122-203 (212)
362 TIGR01846 type_I_sec_HlyB type 99.5 2.8E-14 6.1E-19 172.9 13.7 155 440-599 468-673 (694)
363 TIGR00956 3a01205 Pleiotropic 99.5 1.9E-14 4.2E-19 185.1 12.5 157 441-599 775-986 (1394)
364 cd03240 ABC_Rad50 The catalyti 99.5 2.8E-14 6E-19 147.9 10.1 77 512-590 110-195 (204)
365 TIGR01271 CFTR_protein cystic 99.5 3.1E-14 6.6E-19 184.5 12.7 154 442-598 439-628 (1490)
366 TIGR00958 3a01208 Conjugate Tr 99.5 3.7E-14 8E-19 172.3 12.3 151 442-599 494-695 (711)
367 KOG0057 Mitochondrial Fe/S clu 99.5 5E-14 1.1E-18 159.6 12.3 165 429-598 353-566 (591)
368 PTZ00243 ABC transporter; Prov 99.5 4.5E-14 9.8E-19 183.3 13.5 156 441-598 672-862 (1560)
369 KOG0062 ATPase component of AB 99.5 1.6E-14 3.5E-19 162.2 7.9 148 440-592 91-270 (582)
370 TIGR02857 CydD thiol reductant 99.5 7.7E-14 1.7E-18 163.9 12.5 142 442-588 335-527 (529)
371 COG4618 ArpD ABC-type protease 99.5 5E-14 1.1E-18 158.2 10.2 155 440-596 347-550 (580)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.5 6.7E-14 1.4E-18 148.0 10.3 75 513-590 154-233 (243)
373 TIGR00956 3a01205 Pleiotropic 99.5 7.5E-14 1.6E-18 179.7 12.2 157 441-599 73-293 (1394)
374 PLN03140 ABC transporter G fam 99.5 5.5E-14 1.2E-18 180.8 10.1 82 516-599 335-420 (1470)
375 KOG0927 Predicted transporter 99.5 1.2E-12 2.6E-17 148.1 17.9 151 440-595 86-297 (614)
376 cd03275 ABC_SMC1_euk Eukaryoti 99.5 2.8E-13 6.1E-18 144.2 11.5 74 515-590 153-231 (247)
377 PTZ00265 multidrug resistance 99.5 1.6E-13 3.4E-18 177.1 11.1 77 516-594 578-656 (1466)
378 cd03276 ABC_SMC6_euk Eukaryoti 99.4 2E-13 4.4E-18 140.8 9.5 143 446-588 13-186 (198)
379 KOG0061 Transporter, ABC super 99.4 1.9E-13 4.2E-18 162.7 10.6 157 441-600 42-254 (613)
380 TIGR02868 CydC thiol reductant 99.4 4.1E-13 8.9E-18 157.8 11.8 132 442-578 348-529 (529)
381 TIGR00957 MRP_assoc_pro multi 99.4 2.8E-13 6.1E-18 176.1 10.7 155 442-598 651-842 (1522)
382 cd03273 ABC_SMC2_euk Eukaryoti 99.4 6.7E-13 1.5E-17 141.5 11.0 76 513-591 162-242 (251)
383 COG1132 MdlB ABC-type multidru 99.4 6.7E-13 1.4E-17 157.4 11.9 154 441-599 341-545 (567)
384 PLN03232 ABC transporter C fam 99.4 8.6E-13 1.9E-17 171.4 13.9 156 441-598 629-820 (1495)
385 COG4136 ABC-type uncharacteriz 99.4 6.1E-13 1.3E-17 128.8 8.5 141 440-582 13-199 (213)
386 COG4615 PvdE ABC-type sideroph 99.4 1.2E-12 2.6E-17 143.1 11.8 153 443-597 337-528 (546)
387 KOG0066 eIF2-interacting prote 99.4 5.8E-13 1.2E-17 146.3 8.9 150 439-595 597-779 (807)
388 KOG0055 Multidrug/pheromone ex 99.4 1.2E-12 2.7E-17 160.6 12.6 153 441-597 365-567 (1228)
389 PLN03130 ABC transporter C fam 99.4 1.4E-12 3.1E-17 169.8 13.9 155 442-598 630-820 (1622)
390 COG4778 PhnL ABC-type phosphon 99.4 9.9E-13 2.1E-17 129.7 9.0 147 442-590 24-225 (235)
391 cd03239 ABC_SMC_head The struc 99.4 1.1E-12 2.4E-17 133.2 9.1 131 456-592 24-172 (178)
392 COG4138 BtuD ABC-type cobalami 99.4 4.1E-13 8.8E-18 132.9 5.5 149 448-600 18-215 (248)
393 PLN03130 ABC transporter C fam 99.4 2E-12 4.4E-17 168.4 12.8 159 435-598 1245-1453(1622)
394 PLN03232 ABC transporter C fam 99.4 1.6E-12 3.5E-17 168.9 11.1 159 435-598 1242-1450(1495)
395 TIGR01271 CFTR_protein cystic 99.4 2.3E-12 5.1E-17 167.2 12.6 156 436-597 1226-1431(1490)
396 COG4172 ABC-type uncharacteriz 99.3 2.7E-12 5.8E-17 140.9 10.5 157 442-600 300-510 (534)
397 PTZ00265 multidrug resistance 99.3 3.5E-12 7.6E-17 164.8 13.4 78 517-596 1358-1441(1466)
398 KOG0058 Peptide exporter, ABC 99.3 2.6E-12 5.6E-17 150.3 10.9 155 441-599 480-684 (716)
399 TIGR00957 MRP_assoc_pro multi 99.3 3.1E-12 6.7E-17 166.5 11.1 159 435-598 1292-1500(1522)
400 COG1245 Predicted ATPase, RNas 99.3 6.9E-12 1.5E-16 139.4 11.8 147 447-600 354-532 (591)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.3 3.4E-12 7.4E-17 133.2 8.8 71 514-586 123-201 (213)
402 PTZ00243 ABC transporter; Prov 99.3 7E-12 1.5E-16 163.1 13.3 154 440-598 1321-1525(1560)
403 PF00005 ABC_tran: ABC transpo 99.3 3.8E-12 8.2E-17 122.3 7.9 100 445-545 1-137 (137)
404 PF05192 MutS_III: MutS domain 99.3 1.8E-11 3.9E-16 125.2 13.0 191 52-336 2-204 (204)
405 TIGR00630 uvra excinuclease AB 99.3 1.1E-11 2.3E-16 152.8 13.3 87 511-599 822-918 (924)
406 COG4172 ABC-type uncharacteriz 99.3 1.3E-11 2.8E-16 135.7 12.1 156 441-598 22-239 (534)
407 COG1245 Predicted ATPase, RNas 99.3 2E-11 4.4E-16 135.7 11.5 136 452-590 98-285 (591)
408 PRK00635 excinuclease ABC subu 99.2 3E-11 6.5E-16 155.2 13.5 92 505-598 796-898 (1809)
409 PRK00349 uvrA excinuclease ABC 99.2 4.9E-11 1.1E-15 147.2 13.3 87 511-599 824-920 (943)
410 KOG0062 ATPase component of AB 99.2 2.6E-11 5.7E-16 136.7 7.9 147 443-596 378-558 (582)
411 KOG0056 Heavy metal exporter H 99.2 3.2E-11 7E-16 134.5 7.2 154 440-599 549-754 (790)
412 KOG0065 Pleiotropic drug resis 99.1 4E-11 8.7E-16 147.5 5.6 157 440-598 802-1013(1391)
413 KOG2355 Predicted ABC-type tra 99.1 3.1E-10 6.8E-15 115.2 10.9 154 441-596 26-227 (291)
414 COG4167 SapF ABC-type antimicr 99.1 5.3E-10 1.2E-14 111.7 12.3 155 444-600 28-233 (267)
415 COG4178 ABC-type uncharacteriz 99.1 1.9E-10 4.1E-15 134.3 9.9 147 440-589 404-585 (604)
416 KOG0055 Multidrug/pheromone ex 99.1 3.1E-10 6.7E-15 139.8 11.6 154 441-599 1002-1206(1228)
417 cd03241 ABC_RecN RecN ATPase i 99.1 1.6E-10 3.4E-15 125.3 7.9 74 518-594 171-249 (276)
418 KOG0066 eIF2-interacting prote 99.1 3.8E-10 8.2E-15 124.5 9.9 75 516-595 411-487 (807)
419 COG2401 ABC-type ATPase fused 99.1 6E-10 1.3E-14 122.8 11.1 141 441-582 395-572 (593)
420 KOG0054 Multidrug resistance-a 99.0 1.2E-09 2.7E-14 137.4 9.7 156 441-598 533-723 (1381)
421 KOG0060 Long-chain acyl-CoA tr 98.9 4.9E-09 1.1E-13 120.1 10.9 146 441-591 447-640 (659)
422 COG5265 ATM1 ABC-type transpor 98.9 7.7E-09 1.7E-13 114.8 9.7 153 440-599 274-479 (497)
423 PF02463 SMC_N: RecF/RecN/SMC 98.8 1.8E-08 4E-13 105.0 11.9 71 517-590 136-211 (220)
424 PRK00635 excinuclease ABC subu 98.8 8.3E-09 1.8E-13 133.2 10.8 76 513-590 1695-1774(1809)
425 KOG0064 Peroxisomal long-chain 98.8 1.5E-08 3.2E-13 114.7 10.5 141 440-585 493-676 (728)
426 cd03242 ABC_RecF RecF is a rec 98.8 2.1E-08 4.5E-13 108.4 9.9 59 532-595 208-269 (270)
427 COG1129 MglA ABC-type sugar tr 98.8 2.4E-08 5.3E-13 114.8 10.8 151 444-597 274-481 (500)
428 KOG0054 Multidrug resistance-a 98.8 1.4E-08 3E-13 128.1 8.7 161 433-596 1144-1352(1381)
429 COG3910 Predicted ATPase [Gene 98.7 2.2E-08 4.8E-13 100.8 8.1 57 525-583 137-193 (233)
430 COG4170 SapD ABC-type antimicr 98.7 6.7E-08 1.5E-12 98.7 11.5 74 520-594 162-236 (330)
431 COG0178 UvrA Excinuclease ATPa 98.7 3.4E-08 7.4E-13 116.9 10.2 74 513-588 818-895 (935)
432 TIGR02858 spore_III_AA stage I 98.7 5.4E-08 1.2E-12 105.2 9.1 117 455-584 112-235 (270)
433 PRK08533 flagellar accessory p 98.6 2.8E-07 6E-12 97.5 10.8 142 452-598 22-184 (230)
434 PF13304 AAA_21: AAA domain; P 98.5 1.4E-07 3E-12 96.8 7.5 61 519-581 238-302 (303)
435 KOG0063 RNAse L inhibitor, ABC 98.5 3.1E-07 6.8E-12 102.1 9.9 130 452-583 365-522 (592)
436 TIGR00630 uvra excinuclease AB 98.5 2.1E-07 4.6E-12 115.3 8.6 95 502-598 471-575 (924)
437 PRK00349 uvrA excinuclease ABC 98.5 2.9E-07 6.2E-12 114.3 8.9 95 502-598 473-577 (943)
438 PRK13695 putative NTPase; Prov 98.4 3.1E-07 6.8E-12 92.6 6.6 62 530-595 92-153 (174)
439 cd01124 KaiC KaiC is a circadi 98.3 1.1E-06 2.4E-11 88.7 7.5 47 532-580 93-142 (187)
440 PRK07721 fliI flagellum-specif 98.3 2.3E-06 4.9E-11 98.5 10.2 151 441-600 145-337 (438)
441 cd01120 RecA-like_NTPases RecA 98.3 2.6E-06 5.7E-11 82.8 9.3 122 456-579 1-138 (165)
442 PRK06067 flagellar accessory p 98.3 3.3E-06 7.1E-11 89.2 10.2 143 452-598 23-186 (234)
443 smart00382 AAA ATPases associa 98.1 1.5E-05 3.2E-10 74.2 10.1 117 454-577 2-125 (148)
444 KOG0063 RNAse L inhibitor, ABC 98.1 6.4E-06 1.4E-10 92.0 8.1 71 514-586 210-281 (592)
445 cd01131 PilT Pilus retraction 98.0 6.9E-06 1.5E-10 84.9 6.5 48 532-588 72-119 (198)
446 TIGR02788 VirB11 P-type DNA tr 98.0 3.9E-06 8.4E-11 92.7 4.2 128 452-595 142-270 (308)
447 TIGR00634 recN DNA repair prot 98.0 2.7E-05 5.9E-10 92.8 11.6 114 517-639 440-561 (563)
448 PRK10869 recombination and rep 98.0 3.9E-05 8.4E-10 91.2 11.5 114 517-639 430-551 (553)
449 TIGR00618 sbcc exonuclease Sbc 97.9 1.3E-05 2.9E-10 102.0 6.9 76 513-590 946-1033(1042)
450 KOG0065 Pleiotropic drug resis 97.9 2.4E-05 5.3E-10 97.7 8.0 157 442-599 128-344 (1391)
451 COG3845 ABC-type uncharacteriz 97.8 6.3E-05 1.4E-09 85.9 9.9 166 428-596 258-482 (501)
452 PRK03918 chromosome segregatio 97.8 4.9E-05 1.1E-09 95.1 9.7 76 514-591 785-867 (880)
453 PRK01156 chromosome segregatio 97.8 6E-05 1.3E-09 94.7 8.9 78 514-591 798-883 (895)
454 PHA02562 46 endonuclease subun 97.7 5.1E-05 1.1E-09 90.1 6.6 75 514-592 465-551 (562)
455 PF13555 AAA_29: P-loop contai 97.7 2.5E-05 5.5E-10 65.8 2.8 30 446-475 15-44 (62)
456 cd00820 PEPCK_HprK Phosphoenol 97.7 3.2E-05 7E-10 72.3 3.7 34 442-475 2-36 (107)
457 TIGR01420 pilT_fam pilus retra 97.6 8.3E-05 1.8E-09 83.4 6.7 115 453-583 121-235 (343)
458 cd00009 AAA The AAA+ (ATPases 97.6 0.00019 4.2E-09 67.5 7.2 24 453-476 18-41 (151)
459 PRK10246 exonuclease subunit S 97.6 0.00013 2.9E-09 92.9 7.9 68 513-582 945-1021(1047)
460 PRK06793 fliI flagellum-specif 97.5 9.7E-05 2.1E-09 84.8 5.9 138 450-595 151-300 (432)
461 cd01125 repA Hexameric Replica 97.5 0.00028 6E-09 75.0 9.0 45 532-578 109-159 (239)
462 TIGR00606 rad50 rad50. This fa 97.5 0.00026 5.7E-09 92.3 10.5 68 516-584 1198-1277(1311)
463 PRK04296 thymidine kinase; Pro 97.5 0.00037 7.9E-09 71.7 9.5 142 454-610 2-158 (190)
464 PRK13830 conjugal transfer pro 97.5 0.00042 9E-09 86.2 11.3 48 532-581 650-698 (818)
465 cd01130 VirB11-like_ATPase Typ 97.5 0.0001 2.2E-09 75.4 4.8 26 452-477 23-48 (186)
466 TIGR02168 SMC_prok_B chromosom 97.5 0.00013 2.8E-09 93.4 6.9 76 513-591 1085-1165(1179)
467 PRK09183 transposase/IS protei 97.5 0.00032 6.9E-09 75.7 8.7 108 448-577 96-205 (259)
468 PTZ00132 GTP-binding nuclear p 97.5 0.00019 4.1E-09 74.6 6.5 37 528-565 164-205 (215)
469 TIGR01026 fliI_yscN ATPase Fli 97.5 0.00042 9.2E-09 80.1 9.9 54 544-600 282-342 (440)
470 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0009 1.9E-08 70.3 11.2 64 534-598 121-188 (229)
471 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.0008 1.7E-08 81.8 12.3 30 447-476 19-50 (650)
472 PRK06893 DNA replication initi 97.4 0.00092 2E-08 70.7 11.2 161 455-654 40-208 (229)
473 PLN03210 Resistant to P. syrin 97.4 0.00027 5.8E-09 91.2 7.5 113 532-655 294-416 (1153)
474 PTZ00454 26S protease regulato 97.3 0.00096 2.1E-08 76.4 9.9 22 455-476 180-201 (398)
475 PRK14721 flhF flagellar biosyn 97.3 0.00043 9.4E-09 79.4 7.0 91 452-552 189-285 (420)
476 PRK14088 dnaA chromosomal repl 97.3 0.0017 3.6E-08 75.4 11.8 167 457-655 133-311 (440)
477 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0016 3.5E-08 68.4 10.7 26 452-477 17-42 (235)
478 PRK10865 protein disaggregatio 97.3 0.0063 1.4E-07 76.2 17.3 117 456-582 201-321 (857)
479 PF09818 ABC_ATPase: Predicted 97.2 0.0012 2.7E-08 75.0 9.7 140 452-595 243-416 (448)
480 PRK06995 flhF flagellar biosyn 97.2 0.00061 1.3E-08 79.4 7.4 27 452-478 254-280 (484)
481 cd02023 UMPK Uridine monophosp 97.2 9.5E-05 2.1E-09 76.0 0.5 22 456-477 1-22 (198)
482 cd01128 rho_factor Transcripti 97.2 0.00043 9.4E-09 74.3 5.4 67 523-595 143-211 (249)
483 PRK02224 chromosome segregatio 97.2 0.00063 1.4E-08 85.4 7.4 55 536-591 813-867 (880)
484 TIGR03015 pepcterm_ATPase puta 97.2 0.0017 3.7E-08 69.5 9.6 24 452-475 41-64 (269)
485 COG0419 SbcC ATPase involved i 97.2 0.00075 1.6E-08 85.1 7.8 79 512-592 810-897 (908)
486 PF00004 AAA: ATPase family as 97.1 0.0014 3E-08 61.8 7.8 20 457-476 1-20 (132)
487 PRK11889 flhF flagellar biosyn 97.1 0.0027 5.8E-08 72.1 11.2 24 453-476 240-263 (436)
488 PRK14723 flhF flagellar biosyn 97.1 0.00093 2E-08 81.4 8.0 90 452-549 183-279 (767)
489 PRK06526 transposase; Provisio 97.1 0.0017 3.7E-08 69.9 8.7 105 452-578 96-201 (254)
490 TIGR02169 SMC_prok_A chromosom 97.1 0.00066 1.4E-08 87.2 6.5 76 513-591 1070-1150(1164)
491 PRK07952 DNA replication prote 97.0 0.0022 4.7E-08 68.8 8.7 104 456-577 101-204 (244)
492 PRK06921 hypothetical protein; 97.0 0.003 6.4E-08 68.6 9.8 100 454-577 117-224 (266)
493 PRK13898 type IV secretion sys 97.0 0.004 8.7E-08 77.6 12.2 49 532-581 640-688 (800)
494 cd01122 GP4d_helicase GP4d_hel 97.0 0.0042 9.2E-08 66.8 10.8 36 441-476 16-52 (271)
495 PF13481 AAA_25: AAA domain; P 97.0 0.0034 7.4E-08 63.8 9.4 26 452-477 30-55 (193)
496 PRK14722 flhF flagellar biosyn 97.0 0.00042 9E-09 78.4 2.7 34 444-477 126-160 (374)
497 TIGR03238 dnd_assoc_3 dnd syst 97.0 0.00032 6.9E-09 80.9 1.8 31 442-472 19-50 (504)
498 PTZ00361 26 proteosome regulat 96.9 0.0031 6.8E-08 72.9 9.8 22 455-476 218-239 (438)
499 PRK06731 flhF flagellar biosyn 96.9 0.0069 1.5E-07 65.9 11.8 25 453-477 74-98 (270)
500 cd01393 recA_like RecA is a b 96.9 0.0031 6.7E-08 65.9 8.9 27 452-478 17-43 (226)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=2.1e-102 Score=936.60 Aligned_cols=675 Identities=33% Similarity=0.508 Sum_probs=587.0
Q ss_pred hhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003163 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (843)
Q Consensus 49 ~~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l 128 (843)
|++++++.|||++|+++|+.||.|++|++++..+.| ..++++++++|++|.+|+.++...+ .++|+++. |+++.+
T Consensus 1 m~~~~~~~Le~~~i~~~l~~~~~t~~Gk~~l~~l~P--~~~~~~i~~~l~~~~e~~~~~~~~~-~~~l~~~~--Di~~~l 75 (782)
T PRK00409 1 MQEKTLRVLEFNKIKEQLKTFAASELGKEKVLQLDP--ETDFEEVEELLEETDEAAKLLRLKG-LPPFEGVK--DIDDAL 75 (782)
T ss_pred CChhhHhhCCHHHHHHHHHhHcCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCc--cHHHHH
Confidence 577899999999999999999999999999999754 5899999999999999998886554 67899998 489999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhhcCCCCcccCCCC
Q 003163 129 REVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSAS 208 (843)
Q Consensus 129 ~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~~G~v~D~AS 208 (843)
.++.+|++|++.||..|+.+|.++..+++++... . ... .+|.|..++..+.+++++.+.|.+|||++|.|+|+||
T Consensus 76 ~r~~~g~~l~~~eL~~i~~~l~~~~~l~~~l~~~-~-~~~---~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS 150 (782)
T PRK00409 76 KRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDL-E-EEE---ELPILEEWVAKIRTLPELEQEIHNCIDEEGEVKDSAS 150 (782)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-c-ccc---chhHHHHHHHcCcCcHHHHHHHHHHhCCCCEECCCCC
Confidence 9999999999999999999999999999877532 0 001 2467889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ceeeeCCEEEEEecCCCc-ccceEEe--cccCceeEEeecccc
Q 003163 209 PALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAV 283 (843)
Q Consensus 209 ~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~k-~~~giv~--~~sg~t~~iEP~~~v 283 (843)
|+|++||++++.+++++++.+++++++.+...+++ .+|+|+|||||||+++++ .+||+|| |+||+|+||||..++
T Consensus 151 ~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~ 230 (782)
T PRK00409 151 EKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVV 230 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHH
Confidence 99999999999999999999999998876545554 599999999999999999 9999999 669999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCcccccccCCCCc
Q 003163 284 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPV 363 (843)
Q Consensus 284 ~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~ 363 (843)
+|||++.+++.++++++.+|+++|+..|..+.+.|..+++.+++||+++|+|+||.+++||+|.++.
T Consensus 231 ~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~------------- 297 (782)
T PRK00409 231 ELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFND------------- 297 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999972
Q ss_pred ccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCcc
Q 003163 364 TSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP 443 (843)
Q Consensus 364 ~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (843)
+..+.+.++|||+|. ...+
T Consensus 298 ---------~~~i~l~~~rHPll~----------------------------------------------------~~~~ 316 (782)
T PRK00409 298 ---------EGKIDLRQARHPLLD----------------------------------------------------GEKV 316 (782)
T ss_pred ---------CCcEEEcCcCCceec----------------------------------------------------cCce
Confidence 345999999999983 2358
Q ss_pred ceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhH
Q 003163 444 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 523 (843)
Q Consensus 444 V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~ 523 (843)
||+|+.++.++++++|||||||||||+||++|++++|+|+|+|+|+...+.+++|+++|.++|+.+++..++|+||++|+
T Consensus 317 Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~ 396 (782)
T PRK00409 317 VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMT 396 (782)
T ss_pred ECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHH
Confidence 99999999888999999999999999999999999999999999996568999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccce
Q 003163 524 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 603 (843)
Q Consensus 524 ~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~~l~ 603 (843)
++..++..+++|+|+||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++.....+.|++|.||.+++.
T Consensus 397 ~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~-vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~ 475 (782)
T PRK00409 397 NIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAK-IIATTHYKELKALMYNREGVENASVEFDEETLR 475 (782)
T ss_pred HHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECChHHHHHHHhcCCCeEEEEEEEecCcCc
Confidence 9999999889999999999999999999999998999999988887 999999999999999999999999999999999
Q ss_pred eeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 604 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 683 (843)
Q Consensus 604 ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~~~e~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 683 (843)
|+|++..|+||.|||++||+++|+|++|+++|+.++..+..+++++|++|++++.+++++.++++..+++++++++++++
T Consensus 476 ~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 476 PTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred EEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhchhhhccccchhhccccccccccc
Q 003163 684 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 763 (843)
Q Consensus 684 ~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~e~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (843)
+++++.+ ++.+++++++++|++++++++++ +++++++.. +.+.........+...+.++.+...
T Consensus 556 ~~~~l~~-------~~~~~~~~~~~~a~~~l~~a~~~-------~~~~i~~lk-~~~~~~~~~~~~~~~~~~~~~l~~~- 619 (782)
T PRK00409 556 KKEKLQE-------EEDKLLEEAEKEAQQAIKEAKKE-------ADEIIKELR-QLQKGGYASVKAHELIEARKRLNKA- 619 (782)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HhhhcccchhhHHHHHHHHHHHHHh-
Confidence 6666554 66778888899999999998877 777775432 1110000001111111222211000
Q ss_pred cccccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCee
Q 003163 764 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 841 (843)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGd~V~v~~~~~~G~V~~~~~~~~~~~Vq~G~~k~~v~~~~l~ 841 (843)
. .. ..+.... ...+...+++||.|+|.++|+.|+|+++++ ++.++||+|+|||+|+.++|+
T Consensus 620 ----~-----~~------~~~~~~~-~~~~~~~~~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 620 ----N-----EK------KEKKKKK-QKEKQEELKVGDEVKYLSLGQKGEVLSIPD-DKEAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred ----h-----hh------hhhcccc-ccccccCCCCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHce
Confidence 0 00 0000000 001114699999999999999999999974 568999999999999999985
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=2.4e-101 Score=925.20 Aligned_cols=663 Identities=31% Similarity=0.466 Sum_probs=582.0
Q ss_pred hhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003163 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (843)
Q Consensus 49 ~~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l 128 (843)
|++++++.|||++|++.++.||.|++|++.+..+.| ..++++++++|++|.+|..+.. +++|+++. |+++.+
T Consensus 1 m~~~~l~~Lef~~i~~~l~~~~~t~~gk~~~~~l~P--~~~~~~i~~~l~~~~e~~~~~~----~~~l~~~~--di~~~l 72 (771)
T TIGR01069 1 MREKDLIKLEFDKVKENLLKQTFTPLGKEDAIGLKP--PKSVEESKEIIIKLTALGSIEN----NVRFFGFE--DIRELL 72 (771)
T ss_pred CChhhHHhcCHHHHHHHHHHHcCCHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhhc----cCCcCCCc--cHHHHH
Confidence 678899999999999999999999999999999765 5799999999999999999875 46799988 499999
Q ss_pred HhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhhcCCCCcccCCC
Q 003163 129 REVRRASPLRPNE-ALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSA 207 (843)
Q Consensus 129 ~ra~~g~~L~~~E-L~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~~G~v~D~A 207 (843)
.+++.|++|++.| |+.|+++|..+..+++++... ..+|.|..++..+.+++.|.+.|.+|||++|.|+|+|
T Consensus 73 ~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~~l~~~--------~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~a 144 (771)
T TIGR01069 73 KRAELGGIVKGLEYILVIQNALKTVKHLKVLSEHV--------LDLEILFHLRLNLITLPPLENDIIACIDDDGKVKDGA 144 (771)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHhcCCCcHHHHHHHHHHhCCCCEECCCc
Confidence 9999999999988 999999999999998777431 1357889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--eeeeCCEEEEEecCCCc-ccceEEe--cccCceeEEeeccc
Q 003163 208 SPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSA 282 (843)
Q Consensus 208 S~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--vt~r~gR~vipVk~~~k-~~~giv~--~~sg~t~~iEP~~~ 282 (843)
||+|++||++++.++.++++.+++++++.+...++++ +|+|+|||||||+++++ ++||+|| |+||+|+||||.++
T Consensus 145 S~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~ 224 (771)
T TIGR01069 145 SEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAI 224 (771)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHH
Confidence 9999999999999999999999999987765556664 99999999999999999 9999999 66999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCcccccccCCCC
Q 003163 283 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP 362 (843)
Q Consensus 283 v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~ 362 (843)
|+|||++.+++.++++++.+|+++|+..|.++.+.|..+++.+++||+++|+|+||..+++++|.+..
T Consensus 225 ~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~------------ 292 (771)
T TIGR01069 225 VKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSF------------ 292 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCc
Q 003163 363 VTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAH 442 (843)
Q Consensus 363 ~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (843)
.+.+.+.++|||++. ...
T Consensus 293 ----------~~~i~l~~~rhPll~----------------------------------------------------~~~ 310 (771)
T TIGR01069 293 ----------TGKIILENARHPLLK----------------------------------------------------EPK 310 (771)
T ss_pred ----------CCCEEEccccCceec----------------------------------------------------CCc
Confidence 236999999999983 135
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHh
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 522 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~ 522 (843)
+||+|+.++.+.++++|+||||||||||||+|+++.+|+++|+++|+...+.+++|++++.++++.+++..++|+||++|
T Consensus 311 ~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m 390 (771)
T TIGR01069 311 VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHM 390 (771)
T ss_pred eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHH
Confidence 89999999977688999999999999999999999999999999999666889999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccc
Q 003163 523 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 602 (843)
Q Consensus 523 ~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~~l 602 (843)
+++..++..+++|+|+||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++....++.|++|.||.+++
T Consensus 391 ~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~-viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l 469 (771)
T TIGR01069 391 KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQ-VLITTHYKELKALMYNNEGVENASVLFDEETL 469 (771)
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhcCCCCeEEeEEEEcCCCC
Confidence 99999999899999999999999999999999999999999988987 99999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 603 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL 682 (843)
Q Consensus 603 ~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~~~e~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 682 (843)
.|+|++.+|+||.|||++||+++|+|++|+++|+.++.....+++++|++|++++.+++++..++++.++++++.+++++
T Consensus 470 ~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 549 (771)
T TIGR01069 470 SPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549 (771)
T ss_pred ceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhchhhhccccchhhcccccccccc
Q 003163 683 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 762 (843)
Q Consensus 683 ~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~e~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (843)
++++++++ ++.+++++|+++|++++++++++ ++.++++ +++... ..+...++++.+...
T Consensus 550 ~~~~~l~~-------~~~~~~~~a~~ea~~~~~~a~~~-------~~~~i~~----lk~~~~---~~~~~~~~~~~~~~~ 608 (771)
T TIGR01069 550 QEMEELKE-------RERNKKLELEKEAQEALKALKKE-------VESIIRE----LKEKKI---HKAKEIKSIEDLVKL 608 (771)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----HHhccc---cHHHHHHHHHHHHHH
Confidence 66655554 66788889999999999998887 7777643 332111 011111122111000
Q ss_pred ccccccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCeee
Q 003163 763 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 842 (843)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGd~V~v~~~~~~G~V~~~~~~~~~~~Vq~G~~k~~v~~~~l~~ 842 (843)
.. .. . . ....+. ..... ++||.|+|.++|+.|+|+++++ ++.++||+|+|||+|++++|+.
T Consensus 609 -----~~-~~-------~-~--~~~~~~-~~~~~-~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~ 669 (771)
T TIGR01069 609 -----KE-TK-------Q-K--IPQKPT-NFQAD-KIGDKVRIRYFGQKGKIVQILG-GNKWNVTVGGMRMKVHGSELEK 669 (771)
T ss_pred -----HH-hh-------c-c--cccccc-ccccC-CCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHcee
Confidence 00 00 0 0 000000 01123 8999999999999999999974 5789999999999999999853
No 3
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=6e-87 Score=788.22 Aligned_cols=650 Identities=33% Similarity=0.455 Sum_probs=573.2
Q ss_pred hhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHHHhc
Q 003163 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREV 131 (843)
Q Consensus 52 ~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l~ra 131 (843)
++|..|||++|++.|+.||.|+.|++.+.++.| ..+.+.++..+++|.++..++...| .++++++.+ ++..+.++
T Consensus 2 ~~l~~le~~k~k~~~~~~~~s~~g~~~~~~l~p--~~~~~~i~~~~~e~~~~~~~~~~~g-~~~~~~l~~--i~~~l~~~ 76 (753)
T COG1193 2 KTLEMLEFDKIKELLASYAQSSLGLEELKNLKP--RTDLELIEEELSETAEALDILEDEG-LPPLGGLND--VSEALGRL 76 (753)
T ss_pred chHhhccchHHHHHHHHhccCHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHHHhccC-CCCchhhhh--hHHHHHHH
Confidence 689999999999999999999999999999876 5789999999999999999987643 678999984 89999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhhcCCCCcccCCCCHHH
Q 003163 132 RRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL 211 (843)
Q Consensus 132 ~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~~G~v~D~AS~~L 211 (843)
.+|+.|.++||+.|..+|.+++.+++++..... .. ..+..++..++.+...|..|||++|.|.|.||++|
T Consensus 77 e~g~~l~~~el~~i~~~l~~~~~lkr~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g~i~d~as~~l 146 (753)
T COG1193 77 EKGGRLHVEELLEISDFLRGFRALKRAIKKLER--------IK--RTLALALIELSDLELEINIPIDDDGLIKDRASFEL 146 (753)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccccccccccHHH
Confidence 999999999999999999999999988754311 11 45667888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ceeeeCCEEEEEecCCCc-ccceEEe--cccCceeEEeeccccccH
Q 003163 212 KQSRGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLN 286 (843)
Q Consensus 212 ~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~k-~~~giv~--~~sg~t~~iEP~~~v~ln 286 (843)
..||.+++.++.++++.++.+++... ..+++ .++.|+||||+||+++|+ .++|+|| |+||+|+|+||.++|.+|
T Consensus 147 ~~ir~~lr~~~~~i~~~l~~~~~~~~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl~ieP~~vv~l~ 225 (753)
T COG1193 147 DAIRRQLRDLEEEIRDKLESLIRSKE-AKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATLYIEPRSVVKLN 225 (753)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhh-hHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCeeeecchHHHhhc
Confidence 99999999999999999999998873 44555 599999999999999999 9999999 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCcccccccCCCCcccc
Q 003163 287 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSK 366 (843)
Q Consensus 287 n~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 366 (843)
|++.++..+++.|+++|+++|+..+.++.+.+..+...++.||++.|+++|+.++.++.|.++
T Consensus 226 n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~----------------- 288 (753)
T COG1193 226 NELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFS----------------- 288 (753)
T ss_pred cHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCcccee
Q 003163 367 VSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPI 446 (843)
Q Consensus 367 ~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 446 (843)
+...|.+.++|||++. ..|++
T Consensus 289 -----~~~~l~l~~~~HPll~------------------------------------------------------~~v~~ 309 (753)
T COG1193 289 -----NDGVLELLDARHPLLK------------------------------------------------------EDVPN 309 (753)
T ss_pred -----CCceEEeccccCccCc------------------------------------------------------ccccc
Confidence 2456999999999983 22889
Q ss_pred eEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHH
Q 003163 447 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 526 (843)
Q Consensus 447 disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~ 526 (843)
++.++.+-..++|||||.+||||+||++|+..+|+|+|.++|+.+++.+++|..+|.++|++|++.+.+||||+||.++.
T Consensus 310 ~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~ 389 (753)
T COG1193 310 DLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIV 389 (753)
T ss_pred ccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHH
Confidence 99999777789999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccceeeE
Q 003163 527 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 606 (843)
Q Consensus 527 ~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~~l~ptY 606 (843)
.++..++ +|+++||.++||||.+|++++.++++++.++++. +++|||+.+++.|+..+..+.|++|+||.++++|||
T Consensus 390 ~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~-~~~tTH~~elk~~~~~~~~v~nas~~fd~etL~ptY 466 (753)
T COG1193 390 EILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAK-IVATTHYRELKALAAEREGVENASMEFDAETLRPTY 466 (753)
T ss_pred HHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccc-eehHhhHHHHHHHHhcchhhhchhhhhhHHHhhHHH
Confidence 9995544 8999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred EEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 607 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 686 (843)
Q Consensus 607 ~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~~~~e~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 686 (843)
++.+|+||.||||+||.++|+|..++++|+..++.+..+++.+|+.|+.....+++..+.++...+++..+...+.....
T Consensus 467 ~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~~~~~~~~i~~l~~~~~~~~~~~~~~e~~~~e~~~l~~~~s~~~~ 546 (753)
T COG1193 467 RLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKT 546 (753)
T ss_pred HHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCchHhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHH-HHhchhhhccccchhhccccccccccccc
Q 003163 687 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA-QQLRPSASQSLHCTKVGKNQHVLTSNFQQ 765 (843)
Q Consensus 687 ~l~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~e~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (843)
.+.+ .+.+.+..|..++...+.+++.+ +...++... ++... ....+ ..
T Consensus 547 ~l~e-------~~~~~~~~a~~~~~~~~~~a~~e-------~~~~i~~~~~~~~~~-------------~~~~~----e~ 595 (753)
T COG1193 547 SLLE-------LKAQIVVLAHMGLPVPAEEAKVE-------AVDEVKFLKKKKGIL-------------DAGAF----ES 595 (753)
T ss_pred HHHH-------HHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHhhhhHHHH-------------HHHHH----HH
Confidence 6665 45567777777777777777666 555553321 00000 00000 00
Q ss_pred cccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCeee
Q 003163 766 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 842 (843)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGd~V~v~~~~~~G~V~~~~~~~~~~~Vq~G~~k~~v~~~~l~~ 842 (843)
.... ......+... ...+++||.|.+.+ |+.|.|+++..+.++|.||+|+|||+|+..++++
T Consensus 596 ~~~~-------------~~~~~~~~~~-~~~l~~gDev~~~t-~e~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~ 657 (753)
T COG1193 596 TLKD-------------KKNKVLPEAK-KRKLKLGDEVEVIT-GEPGAVVKIIAGILEALVQSGILKVIVSHLDLEI 657 (753)
T ss_pred Hhhh-------------hhcccCcccc-ccCceecceeEeec-CCccceeeeeccCceeEEecceeEEEEehhHHHH
Confidence 0000 0000011111 34699999999999 9999999999778899999999999999988764
No 4
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=5.4e-65 Score=615.89 Aligned_cols=506 Identities=22% Similarity=0.250 Sum_probs=436.7
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCC
Q 003163 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLD 115 (843)
Q Consensus 47 ~~~~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~ 115 (843)
+.|+..|++.||.-. +.. +..+|.|++|+++++.|+..|..+..+++++++.+.++.. .+... ....
T Consensus 249 m~lD~~t~~~LEl~~~~~~~~~gSL~~-~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~-l~~~ 326 (840)
T TIGR01070 249 MQLDAATRRNLELTENLRGGKQNTLFS-VLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREG-LRPL 326 (840)
T ss_pred EEeCHHHHHhccCCccCCCCCCCcHHH-HHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence 558888888887643 444 4488999999999999877778999999999999999987 32211 1234
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhh
Q 003163 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (843)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~ 195 (843)
+.++. |+++.+.|+..| ..++.||..+..+|..+..+++.+... ..+.+..+...+..+.++.+.|.+
T Consensus 327 L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~ 394 (840)
T TIGR01070 327 LKEVG--DLERLAARVALG-NARPRDLARLRTSLEQLPELRALLEEL---------EGPTLQALAAQIDDFSELLELLEA 394 (840)
T ss_pred hccCc--CHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHH
Confidence 77776 488999999877 689999999999999999988766431 123567777888888999999999
Q ss_pred hcC--------CCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCEEEEEecCCCc-ccce-
Q 003163 196 VVD--------EDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKG- 265 (843)
Q Consensus 196 ~id--------~~G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR~vipVk~~~k-~~~g- 265 (843)
+|+ ++|.|+|++|++|+.+|+..+..++.+.+..........- ..+.......++|+|+|+.++. .+||
T Consensus 395 ~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i-~~lk~~~~~~~gy~iev~~~~~~~vp~~ 473 (840)
T TIGR01070 395 ALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGI-PTLKVGYNAVFGYYIEVTRGQLHLVPAH 473 (840)
T ss_pred HHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCceEEEEEehhhhhcCCcc
Confidence 997 4578999999999999999999877777654443322111 1111122356789999999998 8997
Q ss_pred EEe--cccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003163 266 LLL--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 343 (843)
Q Consensus 266 iv~--~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~ 343 (843)
++| +.+|.+.|++|. ++++|+++.+++.++.+++++|+.+|...+..+.+.|..+.+.++.||+++|+|.+|.+++|
T Consensus 474 ~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~ 552 (840)
T TIGR01070 474 YRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHY 552 (840)
T ss_pred eEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 666 457888999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCC
Q 003163 344 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 423 (843)
Q Consensus 344 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (843)
|+|.++. +..+.+.++|||++....
T Consensus 553 ~~P~~~~----------------------~~~i~i~~~RHP~le~~~--------------------------------- 577 (840)
T TIGR01070 553 TRPRFGD----------------------DPQLRIREGRHPVVEQVL--------------------------------- 577 (840)
T ss_pred cCceecC----------------------CCcEEEEeeECHHHHhcc---------------------------------
Confidence 9999973 235999999999995310
Q ss_pred ccCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHh
Q 003163 424 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 503 (843)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~ 503 (843)
+..+||||+.++.+.++++|||||+|||||+||++|++++|+|+|+|||| ..+.+++|+++|+
T Consensus 578 ----------------~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA-~~a~i~~~D~Ift 640 (840)
T TIGR01070 578 ----------------RTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPA-ESAELPLFDRIFT 640 (840)
T ss_pred ----------------CCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccc-hheEeccccEEEE
Confidence 13589999999977789999999999999999999999999999999999 6799999999999
Q ss_pred hcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh
Q 003163 504 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT 582 (843)
Q Consensus 504 ~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~ 582 (843)
++|..|++..+.|||+.+|.++..|+..+++++|+||||+|+|||+.+|.+++++++++|.+ .++. +|++||+.++..
T Consensus 641 rig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~-~~~~TH~~eL~~ 719 (840)
T TIGR01070 641 RIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAK-TLFATHYFELTA 719 (840)
T ss_pred ecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCE-EEEEcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 6776 999999999999
Q ss_pred hhccccceeeeEEEE--ecccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 583 LKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 583 ~a~~~~~v~ng~v~f--d~~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
++.....+.|.+|.+ +.+++.|+|++..|.++.|||+++|++.|+|++|+++|+.++..
T Consensus 720 l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~ 780 (840)
T TIGR01070 720 LEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQ 780 (840)
T ss_pred HhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999899999999988 55789999999999999999999999999999999999987644
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=3.4e-62 Score=594.40 Aligned_cols=505 Identities=22% Similarity=0.252 Sum_probs=436.7
Q ss_pred hhhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HHcCCCCC
Q 003163 46 KSRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QKHGSCSL 114 (843)
Q Consensus 46 ~~~~~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~--~~~~~~~~ 114 (843)
-+.|+..|++.||.-. +... ..+|.|++|+++++.|+..|..|.++++++++.+.++.+- +... ...
T Consensus 262 ~m~lD~~tl~~Lei~~~~~~~~~gSL~~~-ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~-l~~ 339 (854)
T PRK05399 262 YLILDAATRRNLELTENLRGGRKNSLLSV-LDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLRED-LRE 339 (854)
T ss_pred EEEcCHHHHHhccCCccCCCCCCCcHHHH-hccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-HHH
Confidence 3558888888887643 4444 4789999999999998666689999999999999998851 1111 122
Q ss_pred CCCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHh
Q 003163 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIM 194 (843)
Q Consensus 115 ~~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~ 194 (843)
.+.++. |+++.+.|+..| ..++.|+..+..+|..+..++..+... .-+.|..+...+..+.++.+.|.
T Consensus 340 ~L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~ 407 (854)
T PRK05399 340 LLKGVY--DLERLLSRIALG-RANPRDLAALRDSLEALPELKELLAEL---------DSPLLAELAEQLDPLEELADLLE 407 (854)
T ss_pred HHhcCC--CHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHhhcccHHHHHHHHH
Confidence 366776 488999998775 589999999999999999887665321 11346667777888889999999
Q ss_pred hhcCC--------CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCE---EEEEecCCCc-c
Q 003163 195 QVVDE--------DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-S 262 (843)
Q Consensus 195 ~~id~--------~G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~k-~ 262 (843)
++||+ +|.|+|++|++|+.+|+.++.+++.+.+..+++.+..+ ...+.++.++ |+|+|+..+. .
T Consensus 408 ~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~----~~~l~~~~~~~~gy~iev~~~~~~~ 483 (854)
T PRK05399 408 RAIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERTG----ISSLKVGYNKVFGYYIEVTKANLDK 483 (854)
T ss_pred HHHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCceEEEEcCceeEEEEEEcchhhh
Confidence 99987 57899999999999999999999888888877654322 2234444444 9999999988 8
Q ss_pred cce-EEe--cccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 263 FKG-LLL--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 339 (843)
Q Consensus 263 ~~g-iv~--~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~ 339 (843)
+|+ +++ +.+|.+.|++|. ++++|+++.+++.++.+++.+|+++|...+..+.+.|..+.+++++||+++|+|.+|.
T Consensus 484 vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~ 562 (854)
T PRK05399 484 VPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAE 562 (854)
T ss_pred CChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 665 347778899998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcc
Q 003163 340 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAA 419 (843)
Q Consensus 340 ~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (843)
.++||+|.++. +..+.++++|||+++...
T Consensus 563 ~~~~~~P~~~~----------------------~~~l~i~~~rHP~le~~~----------------------------- 591 (854)
T PRK05399 563 ENNYVRPEFTD----------------------DPGIDIEEGRHPVVEQVL----------------------------- 591 (854)
T ss_pred HCCccccEEeC----------------------CCCEEEEeccCcEEeccc-----------------------------
Confidence 99999999973 235999999999985210
Q ss_pred cCCCccCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHH
Q 003163 420 RKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 499 (843)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~ 499 (843)
.++.+||||+.++.++++++|||||+|||||+||++|++++|+|+|+|||+ ..+.+++++
T Consensus 592 -------------------~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa-~~a~i~~~d 651 (854)
T PRK05399 592 -------------------GGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPA-ESARIGIVD 651 (854)
T ss_pred -------------------CCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceec-cceEecccC
Confidence 135689999999988899999999999999999999999999999999999 679999999
Q ss_pred HHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC-CeEEEEEccch
Q 003163 500 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHG 578 (843)
Q Consensus 500 ~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g-~t~vlitTHd~ 578 (843)
++|+++|..+++..+.|||+.+|.++..|+..+++++|+||||||.||++.+|.++++++++++.+.+ ++ +|++||+.
T Consensus 652 ~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~-~l~aTH~~ 730 (854)
T PRK05399 652 RIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAK-TLFATHYH 730 (854)
T ss_pred eeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCce-EEEEechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 75 99999999
Q ss_pred hHHhhhccccceeeeEEEEec--ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 579 ELKTLKYSNDFFENACMEFDE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 579 el~~~a~~~~~v~ng~v~fd~--~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
++..++++...+.|.+|.++. +++.|+|++..|++++|||+++|++.|+|++|+++|+.++..
T Consensus 731 el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~ 795 (854)
T PRK05399 731 ELTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQ 795 (854)
T ss_pred HHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999986 679999999999999999999999999999999999987654
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-51 Score=493.00 Aligned_cols=511 Identities=23% Similarity=0.272 Sum_probs=415.1
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcC-CCCCCC
Q 003163 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG-SCSLDL 116 (843)
Q Consensus 47 ~~~~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~-~~~~~~ 116 (843)
+.|+..|++-||.-. =+-.+-.+|.|++|.+.++.|+..|..+.++++.+|+-+.++....... .....+
T Consensus 260 m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L 339 (843)
T COG0249 260 MVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREML 339 (843)
T ss_pred EEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 347777777777432 2345669999999999999998777899999999999998888742111 011136
Q ss_pred CCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhh
Q 003163 117 TGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV 196 (843)
Q Consensus 117 ~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~ 196 (843)
..+. |+++.+.|+..| .-++.++..++..++....+...+...... +.+.++...+..++.+.++...+..+
T Consensus 340 ~~v~--DleRl~~Rl~~~-~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~-----~~l~~~~~~i~~~~~~~e~~~ll~~~ 411 (843)
T COG0249 340 KKVP--DLERLLSRLSLG-RASPRDLLRLRDSLEKIPEIFKLLSSLKSE-----SDLLLLLEDIESLDYLAELLELLETA 411 (843)
T ss_pred hcCc--CHHHHHHHHHcC-CCChhhHHHHHHHHHHHHHHHHHHhccccc-----hhhhHHhhhhhccccHHHHHHHHHHH
Confidence 6666 488999998776 689999999999999999887665432110 11222222222333344677777777
Q ss_pred cCCC-------CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeeCCEEEEEecCCCc-ccce-E
Q 003163 197 VDED-------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL-EVSSIHGRLCIRTGADQL-SFKG-L 266 (843)
Q Consensus 197 id~~-------G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~vt~r~gR~vipVk~~~k-~~~g-i 266 (843)
|.++ |-|+++.+++|+.+|......++-+.+...+ .+.......+. ......|+ +|-|+.... .+|. .
T Consensus 412 i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~-~r~~~gi~slki~~n~v~Gy-~ievt~~~~~~~p~~~ 489 (843)
T COG0249 412 INEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELE-ERERTGIKSLKIKYNKVYGY-YIEVTKSNAKLVPDDY 489 (843)
T ss_pred hhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchhhhhhhcccee-EEEechhccccCchHH
Confidence 7665 5689999999999999999766666665555 22221111111 24445665 777777766 7765 3
Q ss_pred Ee-ccc-CceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 003163 267 LL-SSS-GIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 344 (843)
Q Consensus 267 v~-~~s-g~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~ 344 (843)
++ ... +...|.+|. +.+++.++.+++......+++++.++...+..+.+.|+.+...+++||++.+.|..|...++|
T Consensus 490 ir~qt~kn~~rf~t~e-l~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~ 568 (843)
T COG0249 490 IRRQTLKNAERFTTPE-LKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYV 568 (843)
T ss_pred HHHHHHhcceEecCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 33 444 444555554 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCc
Q 003163 345 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 424 (843)
Q Consensus 345 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (843)
+|++++ ...+.+.++|||+++...
T Consensus 569 rP~~~~----------------------~~~l~i~~gRHPvvE~~~---------------------------------- 592 (843)
T COG0249 569 RPEFVD----------------------SNDLEIKEGRHPVVEAVL---------------------------------- 592 (843)
T ss_pred CceecC----------------------CCCEEEEecCcchhhhhc----------------------------------
Confidence 999973 222999999999996321
Q ss_pred cCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhh
Q 003163 425 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 504 (843)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ 504 (843)
...+||||+.+++.+++++|||||+|||||+||++|++++|+|+|+|||| ..+.++++++||++
T Consensus 593 ---------------~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA-~~A~i~ivD~IfTR 656 (843)
T COG0249 593 ---------------DNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPA-EKARIGIVDRIFTR 656 (843)
T ss_pred ---------------cCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeH-HHccccccceeeec
Confidence 12289999999988899999999999999999999999999999999999 89999999999999
Q ss_pred cCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhh
Q 003163 505 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTL 583 (843)
Q Consensus 505 ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~ 583 (843)
+|..+++..+.|||+-+|.+++.|+..+++.+|+||||.|.||...+|.+++++++++|.+. ++. +|++|||.++..+
T Consensus 657 iGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~-tLFATHy~ELt~l 735 (843)
T COG0249 657 IGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCR-TLFATHYHELTEL 735 (843)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCce-EEEeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996 775 9999999999999
Q ss_pred hccccceeeeEEEEec--ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 584 KYSNDFFENACMEFDE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 584 a~~~~~v~ng~v~fd~--~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
......+.|.+|.... +++.+.|++..|.+++|||+++|+..|+|.+|+++|+..+.+
T Consensus 736 ~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~ 795 (843)
T COG0249 736 EEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAE 795 (843)
T ss_pred hhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9988899999887543 457789999999999999999999999999999999987644
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-44 Score=404.49 Aligned_cols=517 Identities=20% Similarity=0.219 Sum_probs=390.8
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 003163 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLT 117 (843)
Q Consensus 47 ~~~~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~ 117 (843)
|.++..||+-||.-. =+=++-.++.|..|.++++.|+..|.-|...+.++|+-+.|..... ..+.-|+
T Consensus 458 Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs---snS~vf~ 534 (1070)
T KOG0218|consen 458 MTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS---SNSIVFE 534 (1070)
T ss_pred eeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence 446777888777421 1224568999999999999997766789999999999888774221 1111111
Q ss_pred CCC-----chhHHHHHHhcccCCCCCHHHHHHHHHHHHHHH-HHH---HHHHHHHhhhhhhhcccccHHHHHHhc-----
Q 003163 118 GVD-----LSLVKSAIREVRRASPLRPNEALAVVALLQFSE-TLQ---LSLRAAIKEDADLYIRFMPLTQMIMQL----- 183 (843)
Q Consensus 118 ~i~-----~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~-~lk---~~l~~~~~~~~~~~~~~~~L~~l~~~l----- 183 (843)
.|. .+|+.+.+.|+=-|.|-+++|+..+...+..+. .++ .++..+-..+......-|.|..++..+
T Consensus 535 si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~ 614 (1070)
T KOG0218|consen 535 SINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLS 614 (1070)
T ss_pred HHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccc
Confidence 111 115667777776666555588887766554432 222 111111000110011123455666655
Q ss_pred -ccchHHHHHHhhhcCCCC----cccCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCE
Q 003163 184 -FVNRSLIKSIMQVVDEDG----SIKDSA-------SPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR 251 (843)
Q Consensus 184 -~~~~~l~~~I~~~id~~G----~v~D~A-------S~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR 251 (843)
...+++...++..--..| .++|.. +..+..+-++++....++...|+++- ++-....++..++.+-.
T Consensus 615 ~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiR-k~Lk~pnlef~~vsgv~ 693 (1070)
T KOG0218|consen 615 TSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIR-KYLKRPNLEFRQVSGVD 693 (1070)
T ss_pred cccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCceeEEecCee
Confidence 234455555544222222 122221 22233344444444445666666653 33333455567777889
Q ss_pred EEEEecCCC--c-ccceEEecccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 003163 252 LCIRTGADQ--L-SFKGLLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQL 328 (843)
Q Consensus 252 ~vipVk~~~--k-~~~giv~~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~l 328 (843)
|||.|+... + +..||..+++..+.-+.|+.++.+-.+|..++...-.+.+..++.+..++..|..++.++...++.+
T Consensus 694 flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~Latl 773 (1070)
T KOG0218|consen 694 FLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLATL 773 (1070)
T ss_pred EEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999443 3 6679999999999888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHH
Q 003163 329 DVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 408 (843)
Q Consensus 329 D~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~ 408 (843)
||+++.|+.|...|+|+|+|+++ ...|.++++|||.++.-
T Consensus 774 DCi~SlA~~s~n~nYvRPtfvd~---------------------~~eI~ikngRhPvIe~L------------------- 813 (1070)
T KOG0218|consen 774 DCILSLAATSCNVNYVRPTFVDG---------------------QQEIIIKNGRHPVIESL------------------- 813 (1070)
T ss_pred HHHHHHHHHhccCCccCcccccc---------------------hhhhhhhcCCCchHHHH-------------------
Confidence 99999999999999999999842 24599999999998632
Q ss_pred HHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc
Q 003163 409 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 487 (843)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v 487 (843)
.++.+||||+.++ +++++.+|||||+||||.++|.++++.+|+|.|+|+
T Consensus 814 ------------------------------l~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfV 863 (1070)
T KOG0218|consen 814 ------------------------------LVDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFV 863 (1070)
T ss_pred ------------------------------hhhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCcc
Confidence 1346899999999 788999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC
Q 003163 488 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 567 (843)
Q Consensus 488 pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g 567 (843)
|+ +.+.+++|+.+|.++|..+++..+.|||..+|.....|+..++..+++||||.|.||...+|.+++.+.++++.+.-
T Consensus 864 PA-eea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~ 942 (1070)
T KOG0218|consen 864 PA-EEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELS 942 (1070)
T ss_pred ch-HHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhh
Confidence 99 88999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CeEEEEEccchhHHhhhcccc-ceeeeEEEE---------ecccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHH
Q 003163 568 SLLTIATTHHGELKTLKYSND-FFENACMEF---------DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 637 (843)
Q Consensus 568 ~t~vlitTHd~el~~~a~~~~-~v~ng~v~f---------d~~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~ 637 (843)
.+.+++|||++.+..+..... .+.|.+|.| |.....+.|++..|.+.+||++++|+..++|.+++.||-.
T Consensus 943 k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~s 1022 (1070)
T KOG0218|consen 943 KCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFS 1022 (1070)
T ss_pred ceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHH
Confidence 446999999999887665443 355666654 2334567799999999999999999999999999999986
Q ss_pred H
Q 003163 638 L 638 (843)
Q Consensus 638 ~ 638 (843)
.
T Consensus 1023 i 1023 (1070)
T KOG0218|consen 1023 I 1023 (1070)
T ss_pred H
Confidence 4
No 8
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=6.2e-40 Score=375.73 Aligned_cols=528 Identities=22% Similarity=0.275 Sum_probs=401.7
Q ss_pred ccceeeeccCc--cccceeccccccC----CchhhhhhhHhhhhhcChHHHHHH-HHhhcCCHHHHHHHhccCCCCCCCH
Q 003163 18 TKSFAITNKNR--RGRLFCSTVAVSD----SDDKKSRVVYESLRVLEWDKLCHS-VSSFARTSLGREATLTQLWSINQTY 90 (843)
Q Consensus 18 ~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~l~~Le~~~i~~~-l~~~~~t~~Gk~~~~~l~p~~~~~~ 90 (843)
+..|-|+|-+- -+++-..+|.+.. |.+. ++-.+.+.. +-.+|.|.+|.+.+..|...|..+.
T Consensus 274 s~~~ei~~~~~~~~m~ld~~av~alnlf~~~~~~-----------~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~ 342 (902)
T KOG0219|consen 274 SGKYELTNHGLHQFMRLDSAAVRALNLFPLPYNN-----------PEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDI 342 (902)
T ss_pred cceEEEeecchHHHhhHHHHHHHHHhhcCCCCCC-----------ccccchhhHHHHhhcccccchhhhhhhhhcchHHH
Confidence 34566776543 4566666776653 3332 333344444 7899999999999999876666788
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCC-CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hh
Q 003163 91 QDSLRLLDETNAAIEMQKHGS-CSLD-LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI---KE 165 (843)
Q Consensus 91 ~~~~~~l~et~ea~~~~~~~~-~~~~-~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~---~~ 165 (843)
..+.++++-+.+.++...-.. ..-+ +..+. |+.+...++- ..-|-++.++++.+.+|..-...+. ..
T Consensus 343 ~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~p--di~rl~~~l~------~~~L~d~~r~yq~~~~l~~~~~~l~~~~~~ 414 (902)
T KOG0219|consen 343 DRINERHDLVEALVEDAEIRQKLRDDLLRRIP--DISRLARRLM------KANLQDVNRIYQAAKLLPTVVQVLISLSES 414 (902)
T ss_pred HHHHHHhhhHHHHHhhhHHHHHHHHHHhhcCh--hHHHhhhhhh------hcchHHHHHHHHHHHHhHHHHHHHHhhhhh
Confidence 888888887765554321100 0000 22222 2334444332 3344566666666666654332221 11
Q ss_pred hhhhhcccccHHHHHHhcccchHHHHHHhhhcCCC----C--cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 003163 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDED----G--SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNE 239 (843)
Q Consensus 166 ~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~~----G--~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~ 239 (843)
.... -..||.+ ....+..+...+..++|.+ + .|+.+.+|+|..||+.+..++..+.+.-.+.-.+....
T Consensus 415 ~~~l--l~~~l~~---~~~~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~~D 489 (902)
T KOG0219|consen 415 HNRL--LKSPLTE---HLKKLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLGLD 489 (902)
T ss_pred hhhh--hhhhhhh---hhhhHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1111 0123443 3344567888888888755 2 58999999999999999999999998888877664422
Q ss_pred cccc---ceeeeCCEEEEEecCCC-c--c-cce-EEecccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 240 SLFL---EVSSIHGRLCIRTGADQ-L--S-FKG-LLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKM 311 (843)
Q Consensus 240 ~~~~---~vt~r~gR~vipVk~~~-k--~-~~g-iv~~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i 311 (843)
...+ +-+--.|. |+.|.... + + -++ +..|-.++|+||....+-.|||+..+++.+++..+..|.+++....
T Consensus 490 ~~kklkLe~~~~~G~-~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia 568 (902)
T KOG0219|consen 490 PKKQLKLENSAQFGW-YFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIA 568 (902)
T ss_pred cccceeeeccchhhe-eeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 11222333 55554432 2 1 233 3446667799999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHH
Q 003163 312 QVDLDEIEKMLNGIIQLDVVNARATYSL--SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQ 389 (843)
Q Consensus 312 ~~~~~~l~~~~~~l~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~ 389 (843)
..|.+.|..+.+.+|.||++.++|..|. -..+++|.+... +...+.+++.|||+++.+
T Consensus 569 ~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~--------------------gs~rl~l~~~rHp~lE~Q 628 (902)
T KOG0219|consen 569 ATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL--------------------GSKRLELKQSRHPVLEGQ 628 (902)
T ss_pred hhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc--------------------chhHHHHHhcccchhhcc
Confidence 9999999999999999999999999988 668899988731 123689999999999632
Q ss_pred hHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCch
Q 003163 390 HKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKT 468 (843)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKT 468 (843)
+.-.++||++.+. .++++++|+|||++|||
T Consensus 629 -------------------------------------------------d~~~fIpNdv~le~~~~~~~IiTGpNMGGKS 659 (902)
T KOG0219|consen 629 -------------------------------------------------DEIPFIPNDVVLEKGKCRMLIITGPNMGGKS 659 (902)
T ss_pred -------------------------------------------------ccCCCCCCccccccCCceEEEEeCCCcCccc
Confidence 1245799999999 78899999999999999
Q ss_pred hhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 469 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 469 TLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
|.+|+.|.+.+|+|.|+|+|+ +.+.+++.+.|+.+.|..++...+.|||+.+|-..+.|+..+++.+|+++|||++||.
T Consensus 660 Tyir~~Gvi~lmAQIGcfVPc-e~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTS 738 (902)
T KOG0219|consen 660 TYIRQVGVIVLMAQIGCFVPC-ESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTS 738 (902)
T ss_pred hhhhhhhHHHHHHHhCCceeh-hhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCce
Confidence 999999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe--cccceeeEEEecCCCCCChHHHHHHHc
Q 003163 549 PLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD--EVKLKPTYKILWGVPGRSSAINIAERL 625 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd--~~~l~ptY~l~~G~~g~S~a~~iA~~~ 625 (843)
..+|-.++|++-+++..+ |+ .+|++||+.++..++.....+.|-+|... .+...-.|++..|+++.|+++.+|+..
T Consensus 739 t~DGfgiAwai~ehi~~ki~c-f~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a 817 (902)
T KOG0219|consen 739 TYDGFGIAWAIAEHIATKIGC-FCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELV 817 (902)
T ss_pred eccCccHHHHHHHHHHHHHhH-hHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHc
Confidence 999999999999998876 56 48999999999999998888888776543 244555699999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 003163 626 GLPGIVVQNARQLYGA 641 (843)
Q Consensus 626 gl~~~ii~~A~~~~~~ 641 (843)
|+|+.+++.|+....+
T Consensus 818 ~fp~~vie~A~~~~~e 833 (902)
T KOG0219|consen 818 GFPEHVIEMAKQKAEE 833 (902)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999986543
No 9
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-38 Score=367.48 Aligned_cols=506 Identities=19% Similarity=0.217 Sum_probs=394.7
Q ss_pred HHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH--H-cCCCCCCCCCCCchhHHHHHHhcccCCCCCH
Q 003163 63 CHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ--K-HGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139 (843)
Q Consensus 63 ~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~--~-~~~~~~~~~~i~~~~v~~~l~ra~~g~~L~~ 139 (843)
+-.+-.+|+|+.||+++..|+..|..+.+.|+++++-+.-..... . ..+ -.|.-+. |+++.|.|+..++.=..
T Consensus 563 L~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~--e~l~klP--DlERlL~Rih~~~~~~~ 638 (1125)
T KOG0217|consen 563 LFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVG--ETLKKLP--DLERLLVRIHNGGEKNK 638 (1125)
T ss_pred HHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHH--HHHhhCC--cHHHHHHHHHhcCccch
Confidence 444559999999999999998777888899999988655444310 0 000 0134444 58899999998877778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhhcCC-----CCccc--CCCCHHHH
Q 003163 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE-----DGSIK--DSASPALK 212 (843)
Q Consensus 140 ~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~-----~G~v~--D~AS~~L~ 212 (843)
..+.+..+.|.+.+.+-..+.......... .....|..++.+++.+..-.......+|. +|.|. -+++.|++
T Consensus 639 k~i~~f~rvLegfk~~~~~~~~~~~v~~~~-~~~~~is~~~~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD 717 (1125)
T KOG0217|consen 639 KKIADFIRVLEGFKEINKLLGSLINVLKEG-EGLRLISELLESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYD 717 (1125)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHH
Confidence 888888888888877765543332211100 01123444444444344444444445555 66654 45688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCEEEEEecCCCc-ccc--eEEecc-cCceeEEeeccccccHHH
Q 003163 213 QSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFK--GLLLSS-SGIGSVIEPLSAVPLNDE 288 (843)
Q Consensus 213 ~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR~vipVk~~~k-~~~--giv~~~-sg~t~~iEP~~~v~lnn~ 288 (843)
..-..++.+++.+...|+.+-.+..- .....+++--..|.+.|+.+.. +++ +++.|+ .|-..|..|. +-.+=..
T Consensus 718 ~a~k~~~e~e~~L~~~L~~~rk~l~c-~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~-~~kli~~ 795 (1125)
T KOG0217|consen 718 EAMKRVDEAENELLAYLEEYRKRLGC-SSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPD-LRKLIAH 795 (1125)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCC-CceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHH-HHHHHHH
Confidence 99999999999999998887655432 2344688889999999999998 888 766665 5666798886 4444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCeeeCCcccccccCCCCcccc
Q 003163 289 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG--TSPNIFLPQDMKRSLTHEPVTSK 366 (843)
Q Consensus 289 l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~--~~P~~~~~~~~~~~~~~~~~~~~ 366 (843)
+.+++.....-.....+++...+..+...++.++..++.|||+++.|.+|..+++ |+|.++.+.+
T Consensus 796 l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~d------------- 862 (1125)
T KOG0217|consen 796 LDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTD------------- 862 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccC-------------
Confidence 5555555555566888999999999999999999999999999999999998875 9999885321
Q ss_pred cCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCcccee
Q 003163 367 VSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPI 446 (843)
Q Consensus 367 ~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 446 (843)
..+.+.+.+.|||++.... .++.++||
T Consensus 863 -----t~~~l~~~~~~Hpcfsl~s------------------------------------------------~~~~fipN 889 (1125)
T KOG0217|consen 863 -----TPGFLIVKGLRHPCFSLPS------------------------------------------------TGTSFIPN 889 (1125)
T ss_pred -----CCceeEEecccCceeecCc------------------------------------------------CCCccccc
Confidence 1236899999999984210 13468999
Q ss_pred eEEEe--cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHH
Q 003163 447 DIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 524 (843)
Q Consensus 447 disL~--~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~ 524 (843)
++.++ ....+.++||||++|||||||+++.+++|+|.|++||+ ....++.++.||+++|..+.+..+-|||.-++..
T Consensus 890 ~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa-~~~~~tpidrI~tRlGA~D~im~g~STF~vELsE 968 (1125)
T KOG0217|consen 890 DVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPA-EVMELTPIDRIFTRLGANDDIMSGESTFFVELSE 968 (1125)
T ss_pred hhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccH-HHhcccchHHHhhhcccccchhcCCceEEEeccc
Confidence 99999 45556669999999999999999999999999999999 8888999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEE--Eeccc
Q 003163 525 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACME--FDEVK 601 (843)
Q Consensus 525 l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~--fd~~~ 601 (843)
...|+..++..+||++||.+.||-..+|.+|+.+++++|... ++ ..+++|||..+.....+++.+..++|. .|.+.
T Consensus 969 T~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c-~~fFSTHYhsl~~~~~~~p~Vrl~~Ma~~vd~e~ 1047 (1125)
T KOG0217|consen 969 TKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQC-LGFFSTHYHSLCVDFMHHPQVRLLHMACVVDEEI 1047 (1125)
T ss_pred hHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccc-cCCccccccchhHhhhcCccccchhheeeecCCc
Confidence 999999999999999999999999999999999999999985 55 489999999999877777777777775 35554
Q ss_pred -ceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHhH
Q 003163 602 -LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 643 (843)
Q Consensus 602 -l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~~~ 643 (843)
..+.|++..|++|+||++++|+..|+|..|+++|.....+-.
T Consensus 1048 ~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e 1090 (1125)
T KOG0217|consen 1048 DVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELE 1090 (1125)
T ss_pred cEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999987554433
No 10
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.3e-38 Score=335.70 Aligned_cols=200 Identities=40% Similarity=0.633 Sum_probs=169.5
Q ss_pred CCccceeeEEEecCC-eEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhh
Q 003163 440 LAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 518 (843)
Q Consensus 440 ~~~~V~~disL~~~g-~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstf 518 (843)
++++|+||+.++.+. ++++|||||+|||||+||+||.+.+|+|+|+|+|+ +...+++|++++..++..+++..+.|+|
T Consensus 28 ~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA-~~~~i~~~d~I~t~~~~~d~~~~~~S~F 106 (235)
T PF00488_consen 28 NKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA-ESAEIPIFDRIFTRIGDDDSIESGLSTF 106 (235)
T ss_dssp TSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS-SEEEEE--SEEEEEES---SSTTSSSHH
T ss_pred CCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee-cccccccccEEEeecccccccccccccH
Confidence 467899999999555 89999999999999999999999999999999999 7789999999999999999999999999
Q ss_pred hHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 519 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 519 S~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
..+|+++..++..+++.+|+|+||++.||+|.+|.+++.+++++|.++ ++. +|++||+.++..+......+.+.+|.+
T Consensus 107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~ 185 (235)
T PF00488_consen 107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF-VIIATHFHELAELLERNPNVQNYHMEV 185 (235)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E-EEEEES-GGGGGHHHHSTTEEEEEEEE
T ss_pred HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc-EEEEeccchhHHHhhhCccccccceee
Confidence 999999999999999999999999999999999999999999999984 886 999999999998877777888888887
Q ss_pred ec--ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 598 DE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 598 d~--~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
+. .++.++|++..|.++.|||+.+|+..|+|++++++|++++..
T Consensus 186 ~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~ 231 (235)
T PF00488_consen 186 EEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQ 231 (235)
T ss_dssp EEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred eeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 64 667889999999999999999999999999999999987653
No 11
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-35 Score=327.64 Aligned_cols=540 Identities=21% Similarity=0.223 Sum_probs=394.2
Q ss_pred ccceecccccceeeeccCccccceecccccc-C-CchhhhhhhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCC
Q 003163 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVS-D-SDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN 87 (843)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~ 87 (843)
+++.||..-|.|.++|----- --|..+- + |+.++-.-++.++ =||-.+-+ |-..|+|..|++.++.|...|.
T Consensus 220 ~v~~pI~gik~f~l~~lv~iD---~nTisaL~Ifp~e~~~~~~k~~~--~~g~Slf~-l~n~c~s~~g~k~Lr~Wf~nPt 293 (849)
T KOG0221|consen 220 NVSVPILGIKKFMLTHLVNID---QNTISALQIFPSESHPSKVKSGL--KEGLSLFG-LLNRCHSKWGEKLLRLWFTNPT 293 (849)
T ss_pred cccccccceeEEeecceeeec---cchHHHHHhcccccccchhhhhh--hcchhHHH-HHHHHhhHHHHHHHHHHhcCCC
Confidence 578899999999998742111 1122222 2 5555432222222 23444444 4489999999999999976667
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcC---CCCCCCCCCCchhHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 88 QTYQDSLRLLDETNAAIEMQKHG---SCSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLSLRAAI 163 (843)
Q Consensus 88 ~~~~~~~~~l~et~ea~~~~~~~---~~~~~~~~i~~~~v~~~l~ra~~g-~~L~~~EL~~i~~~L~~~~~lk~~l~~~~ 163 (843)
+|..++..+++-+.-+..-.... ..+-.++.+.+ +-..+.+.+.| +.|+ .-..+++++..+-.+.+.++..-
T Consensus 294 td~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~--~~~~~~~~~sg~t~l~--~W~~~~stv~~~~~i~~~~rslp 369 (849)
T KOG0221|consen 294 TDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKN--VPLILKRMKSGHTKLS--DWQVLYSTVYSALGIRDACRSLP 369 (849)
T ss_pred CcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccc--HHHHHHHHhcCCceec--hHHHHHHHHHHHHHHHHHHHhCc
Confidence 89999988888654332110000 00111444443 55567777766 3344 33456677766665554443221
Q ss_pred hhhhhhhcccc--cHHHHHHhcccchHHHHHHhhhcCCCC-------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 164 KEDADLYIRFM--PLTQMIMQLFVNRSLIKSIMQVVDEDG-------SIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234 (843)
Q Consensus 164 ~~~~~~~~~~~--~L~~l~~~l~~~~~l~~~I~~~id~~G-------~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~ 234 (843)
... .++ .-.++ +..+.++..-|..+||-+| .|..+-+|+|+++|+....+..-+.....+-..
T Consensus 370 -~s~----~~~~~~~~~~---~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~ 441 (849)
T KOG0221|consen 370 -QSI----QLFRDIAQEF---SDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMGLPSFLTEVARKELE 441 (849)
T ss_pred -cch----hhhhHHHHHH---HHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHccchHHHHHHHHHHHH
Confidence 010 111 01122 2234567778888898876 578999999999999999866655544443332
Q ss_pred hhccccccc-ceeeeCCEEEEEecCCCc-ccceE------EecccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHH
Q 003163 235 NENNESLFL-EVSSIHGRLCIRTGADQL-SFKGL------LLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 306 (843)
Q Consensus 235 ~~~~~~~~~-~vt~r~gR~vipVk~~~k-~~~gi------v~~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~ 306 (843)
+..+..+.- -|-+-.=-|++.|+..+. -..|. ....|-...|+....+.+|.+.+.+..-++..-+-.|+-.
T Consensus 442 ~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~ 521 (849)
T KOG0221|consen 442 NLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCEIRDQETLIMYQ 521 (849)
T ss_pred hhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHhhhhhHHHHHHH
Confidence 222211111 111112224555555444 22233 2245667789999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhH
Q 003163 307 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 386 (843)
Q Consensus 307 L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL 386 (843)
|...|......|.+.+...++||++.+.|..|.++||.+|.++. +.-.+.+.++|||++
T Consensus 522 Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~---------------------e~~il~I~ngrh~l~ 580 (849)
T KOG0221|consen 522 LQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVP---------------------EVLILRIQNGRHPLM 580 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------HHHHHHHHcCChhHH
Confidence 99999999999999999999999999999999999999999983 123378999999998
Q ss_pred HHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCC
Q 003163 387 LQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTG 465 (843)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGs 465 (843)
+.- .+.+|||+..++ .+|++.+|||||.|
T Consensus 581 e~~--------------------------------------------------~dtfvPNst~iggdkgri~vITGpNas 610 (849)
T KOG0221|consen 581 ELC--------------------------------------------------ADTFVPNSTEIGGDKGRIKVITGPNAS 610 (849)
T ss_pred HHH--------------------------------------------------HHhcCCCceeecCCCceEEEEeCCCCC
Confidence 531 136899999999 89999999999999
Q ss_pred CchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCC
Q 003163 466 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 466 GKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~s 545 (843)
|||.+||.+|+++++++.|+|||+ +.+.+++.++|+++++..+++....|||.-...+++.++..++..+|+|+||.|.
T Consensus 611 GKSiYlkqvglivfLahIGsFVPA-e~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGK 689 (849)
T KOG0221|consen 611 GKSIYLKQVGLIVFLAHIGSFVPA-EEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGK 689 (849)
T ss_pred CceEEEeechhhhHHHhhccccch-hhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccC
Confidence 999999999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCC--eEEEEEccchhHHhhhcc--ccceeeeEE---EEecccceeeEEEecCCCCCChH
Q 003163 546 GTNPLEGTALGMSLLEAFAESGS--LLTIATTHHGELKTLKYS--NDFFENACM---EFDEVKLKPTYKILWGVPGRSSA 618 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~--t~vlitTHd~el~~~a~~--~~~v~ng~v---~fd~~~l~ptY~l~~G~~g~S~a 618 (843)
|||..+|..+...++.++..+|. ..|+++||..++..+..- .+.+....| ..+.+.+.+.|++..|....|+|
T Consensus 690 GT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~k~sfa 769 (849)
T KOG0221|consen 690 GTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLAKASFA 769 (849)
T ss_pred CccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchhhhccc
Confidence 99999999999999998887753 359999999998854321 111111111 12567889999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHH
Q 003163 619 INIAERLGLPGIVVQNARQLY 639 (843)
Q Consensus 619 ~~iA~~~gl~~~ii~~A~~~~ 639 (843)
+.+|+..|+|++++.||....
T Consensus 770 l~~ak~~glp~~vV~Ra~~v~ 790 (849)
T KOG0221|consen 770 LHTAKQAGLPDKVVARAKEVS 790 (849)
T ss_pred chhHhhcCCCHHHHHHHHHHH
Confidence 999999999999999998754
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.7e-37 Score=323.35 Aligned_cols=193 Identities=32% Similarity=0.474 Sum_probs=181.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
+.+|++|++++ .++++++|+||||+||||++++++++.+|+|+|+|+|+ ....+++++++|.+++..+++..+.|+|+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa-~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPA-KSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCc-cccEeccccEEEEecCcccccccCcchHH
Confidence 46899999999 66889999999999999999999999999999999999 67899999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+|+++..++..+++|+|+|||||++||||.++.+++++++++|.+. +++ +|++||++++.........+.+++|.++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~-~i~~TH~~el~~~~~~~~~v~~~~m~~~ 173 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCL-TLFSTHYHSLCDEFHEHGGVRLGHMACA 173 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCc-EEEEeccHHHHHHhhcCcceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886 886 9999999999987777778999999885
Q ss_pred c--------ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHH
Q 003163 599 E--------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 635 (843)
Q Consensus 599 ~--------~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A 635 (843)
. +++.|+|++..|+++.|||+.+|++.|+|++|+++|
T Consensus 174 ~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 174 VKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred EeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 4 578999999999999999999999999999999986
No 13
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=8.9e-37 Score=319.23 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=183.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
..+|+++++++ .++++++|+|||||||||+||+||.+.+|+|.|+|+|+ ....++.++.++..++..+++..++|+|+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa-~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPC-DSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCc-ccEEEeccceeEeeeccccchhcCcChHH
Confidence 46899999999 68899999999999999999999999999999999999 67889999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.++.++..++..+++|+|||||||++||++.++..+.+.+++.+.+ .|++ +|++||+.++..++++...+.+|+|.++
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~-vlisTH~~el~~~~~~~~~i~~g~~~~~ 173 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCF-CLFATHFHELTALADEVPNVKNLHVTAL 173 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCe-EEEEechHHHHHHhhcCCCeEEEEEEEE
Confidence 9999999999888999999999999999999999998888888876 4776 9999999999999999999999999876
Q ss_pred c----ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHH
Q 003163 599 E----VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 640 (843)
Q Consensus 599 ~----~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~ 640 (843)
. +++.|+|++..|+++.|||+++|++.|+|++++++|+++..
T Consensus 174 ~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~ 219 (222)
T cd03285 174 TDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKAL 219 (222)
T ss_pred EeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 5 67889999999999999999999999999999999998654
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=7.2e-37 Score=319.42 Aligned_cols=193 Identities=33% Similarity=0.497 Sum_probs=179.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
..+|++++++. ..+++++|+||||+||||+||+|+++.+++|.|.++|+ ....+++|++++.+++..+++..++|+|+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-CceEEeccceEEEEecCccccccccchHH
Confidence 46899999999 77899999999999999999999999999999999999 77899999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccc-cceeeeEEEE
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSN-DFFENACMEF 597 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~-~~v~ng~v~f 597 (843)
.+++++..++..+++++|+|||||++|||+.++.+++.++++.+.+. +++ +|++||+.++..+.... ..+.|.+|.|
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~-~i~~TH~~~l~~~~~~~~~~v~~~~~~~ 174 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCL-VLFVTHYPSLGEILRRFEGSIRNYHMSY 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCe-EEEEcccHHHHHHHHhcccCeEEEEEEE
Confidence 99999999999999999999999999999999999989999999987 776 99999999999877543 4578888887
Q ss_pred ec----------ccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHH
Q 003163 598 DE----------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 635 (843)
Q Consensus 598 d~----------~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A 635 (843)
+. +++.|+|++..|+++.|||+.+|++.|+|++|+++|
T Consensus 175 ~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 175 LESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred EEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 53 368899999999999999999999999999999986
No 15
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-35 Score=331.12 Aligned_cols=506 Identities=18% Similarity=0.249 Sum_probs=363.8
Q ss_pred hhhhhcChHHHHH-----HHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCCCchh--
Q 003163 52 ESLRVLEWDKLCH-----SVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSCSLDLTGVDLSL-- 123 (843)
Q Consensus 52 ~~l~~Le~~~i~~-----~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~-~~~~~~~~~~i~~~~-- 123 (843)
.+++.++|++..+ .+..++.|+.|-+.++.-...|..|...+..+++-+.+...-.. ..++.+.+....+.+
T Consensus 267 ~~lelV~~~~~kn~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~~ 346 (867)
T KOG0220|consen 267 QSLELVINNQYKNNHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQL 346 (867)
T ss_pred cceEEechhhhhcccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHHH
Confidence 3567777777442 35578999999999988655557888888877765544332110 001111122111110
Q ss_pred HHHHHHhcccCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcc--cchHHHHHHhhhc
Q 003163 124 VKSAIREVRRASPLRPN----EALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLF--VNRSLIKSIMQVV 197 (843)
Q Consensus 124 v~~~l~ra~~g~~L~~~----EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~--~~~~l~~~I~~~i 197 (843)
+...+.+.....+-.++ .+..+..+|+...-++..+.+. ..+.+.++...+. -+..+.+-|..+|
T Consensus 347 ~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~---------~s~~~~e~~~~~~~~r~~~i~~~i~e~I 417 (867)
T KOG0220|consen 347 LSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNC---------NSNLLREYYGSFKDKRFGIILEKIKEVI 417 (867)
T ss_pred HHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc---------hhHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 11111111001111111 1222333333333333222111 1123444444433 2344788888888
Q ss_pred CCCC---------------cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCC-EEEEEec--CC
Q 003163 198 DEDG---------------SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTG--AD 259 (843)
Q Consensus 198 d~~G---------------~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~g-R~vipVk--~~ 259 (843)
|+|- .|+.+-.--|+-.|+-..++.++......++-........+ ....+.| .|-++-+ ..
T Consensus 418 ~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~nl~~-~f~sarGF~~ri~~~~~~~ 496 (867)
T KOG0220|consen 418 NDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSLNLRL-SFSSARGFFIRITTDCIAL 496 (867)
T ss_pred hHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc-cccccccEEEEeecccccc
Confidence 8772 35566667788888888777666666444443222111111 1223333 2222222 12
Q ss_pred Cc-ccceEEeccc--CceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003163 260 QL-SFKGLLLSSS--GIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 336 (843)
Q Consensus 260 ~k-~~~giv~~~s--g~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~ 336 (843)
.. ..|-.+.+.+ ....-+....++.+|.++.+.-.++.-.-+.++..|...+..+.+.+....+++.-||++++.|.
T Consensus 497 ~~~~lP~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~ 576 (867)
T KOG0220|consen 497 PSDTLPSEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAH 576 (867)
T ss_pred ccccCchhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4554444332 23333567778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCC
Q 003163 337 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGG 416 (843)
Q Consensus 337 ~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (843)
+...-++++|+|+. .+.+.++|||+|++-
T Consensus 577 ~~~~~~y~~P~fT~------------------------slaI~qGRHPILe~i--------------------------- 605 (867)
T KOG0220|consen 577 ACTLSDYVRPEFTD------------------------SLAIKQGRHPILEKI--------------------------- 605 (867)
T ss_pred hhccccccccccCC------------------------ceeeccCCCchhhhh---------------------------
Confidence 99999999999962 289999999999753
Q ss_pred CcccCCCccCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccc
Q 003163 417 NAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 496 (843)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~ 496 (843)
+.++++.++..++.+.++.+|||||+|||||.||.++++.+|+|.|+|+|+ ..+.++
T Consensus 606 ----------------------~~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA-~YaS~p 662 (867)
T KOG0220|consen 606 ----------------------SAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPA-EYASFR 662 (867)
T ss_pred ----------------------cccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcch-hhccch
Confidence 235789999999988899999999999999999999999999999999999 899999
Q ss_pred hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003163 497 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 576 (843)
Q Consensus 497 ~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTH 576 (843)
+|+++|+++|..++++.+-|+|..+|+..+.|+..+++.+||+|||.+.||...+|.++.+++.+++..-... +++.||
T Consensus 663 If~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~Lkay-TflATH 741 (867)
T KOG0220|consen 663 VFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAY-TFLATH 741 (867)
T ss_pred HHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHh-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988887 899999
Q ss_pred chhHHhhhccccceeeeEEEEec--cccee-eEEEecCCC-CCChHHHHHHHcCCCHHHHHHHHHHHHHh
Q 003163 577 HGELKTLKYSNDFFENACMEFDE--VKLKP-TYKILWGVP-GRSSAINIAERLGLPGIVVQNARQLYGAA 642 (843)
Q Consensus 577 d~el~~~a~~~~~v~ng~v~fd~--~~l~p-tY~l~~G~~-g~S~a~~iA~~~gl~~~ii~~A~~~~~~~ 642 (843)
..+++.++...+.|.|.++..+. .+... .|+|..|.. |..|++.+++..-+|.+++..|+.+...-
T Consensus 742 FldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i 811 (867)
T KOG0220|consen 742 FLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQI 811 (867)
T ss_pred HHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHH
Confidence 99999999999999999987653 22222 488887754 77899999999999999999998765443
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=4.3e-36 Score=312.85 Aligned_cols=196 Identities=32% Similarity=0.461 Sum_probs=183.3
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhH
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 520 (843)
..+|+++++++.+.++++|+|||||||||+||+|+++.++++.|.++|+ ....++++++++..++..+++..+.|+|..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~-~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~ 95 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPA-SKAEIGVVDRIFTRIGASDDLAGGRSTFMV 95 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecc-ccceecceeeEeccCCchhhhccCcchHHH
Confidence 4689999999966699999999999999999999999999999999998 668899999999999999999999999999
Q ss_pred HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe-
Q 003163 521 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD- 598 (843)
Q Consensus 521 ~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd- 598 (843)
++.++..++..+.+|+|+|||||++||++.++..+...+++.+.+. +++ +|++||+.++..+++....+.+++|.++
T Consensus 96 e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~-vi~~TH~~~l~~l~~~~~~v~~~~~~~~~ 174 (216)
T cd03284 96 EMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAK-TLFATHYHELTELEGKLPRVKNFHVAVKE 174 (216)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCc-EEEEeCcHHHHHHhhcCCCeEEEEEEEEe
Confidence 9999999999999999999999999999999998888899999887 887 9999999999999999999999999885
Q ss_pred -cccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHH
Q 003163 599 -EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 638 (843)
Q Consensus 599 -~~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~ 638 (843)
.+++.|+|++..|.++.|||+.+|++.|+|++++++|+++
T Consensus 175 ~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 175 KGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred eCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 4678999999999999999999999999999999999975
No 17
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1.5e-35 Score=304.87 Aligned_cols=186 Identities=58% Similarity=0.920 Sum_probs=173.1
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhH
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 520 (843)
..+|++++++..+.++++|+||||||||||||+|+...+++|.|+++|+.....++++++++..++..+++..++++||+
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~ 94 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSS 94 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHH
Confidence 46899999998766789999999999999999999888999999999986667889999999999999999999999999
Q ss_pred HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003163 521 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 521 ~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
+|+++..++..+.+|+++|+|||++|||+..+..+...+++.+.+.+.+ +|++||+.++..++++...+.+|.+.+|.+
T Consensus 95 g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~-vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~ 173 (200)
T cd03280 95 HMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGAL-VIATTHYGELKAYAYKREGVENASMEFDPE 173 (200)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHhcCCCeEEEEEEEecC
Confidence 9999999998889999999999999999999998877788888877887 999999998889999999999999999999
Q ss_pred cceeeEEEecCCCCCChHHHHHHHcCC
Q 003163 601 KLKPTYKILWGVPGRSSAINIAERLGL 627 (843)
Q Consensus 601 ~l~ptY~l~~G~~g~S~a~~iA~~~gl 627 (843)
++.|+|++..|+++.|||+++|+++|+
T Consensus 174 ~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 174 TLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999999986
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.3e-34 Score=301.26 Aligned_cols=185 Identities=30% Similarity=0.444 Sum_probs=168.1
Q ss_pred CccceeeEEEecCC-eEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~~~g-~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
+.+||||+.++.+. ++++|+||||+|||||||+|+...++++.|.++|+ ....++++++++..++..+++..++|+|+
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a-~~~~~~~~d~i~~~l~~~~si~~~~S~f~ 93 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA-DSATIGLVDKIFTRMSSRESVSSGQSAFM 93 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc-CCcEEeeeeeeeeeeCCccChhhccchHH
Confidence 46899999999654 88999999999999999999988888999999998 77899999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC---CeEEEEEccchhHHhhhc--cccceeeeE
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG---SLLTIATTHHGELKTLKY--SNDFFENAC 594 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g---~t~vlitTHd~el~~~a~--~~~~v~ng~ 594 (843)
.+|+++..++..+.+|+|+|||||++||||.++.+++.++++.+.+.+ .+ +|++||+.++..... ....+.+.+
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~-vli~TH~~~l~~~~~~~~~~~~~~~~ 172 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPR-VIVSTHFHELFNRSLLPERLKIKFLT 172 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEcChHHHHHhhhhccCCceEEEE
Confidence 999999999999999999999999999999999999888999987653 35 899999999997664 566788999
Q ss_pred EEE--e------cccceeeEEEecCCCCCChHHHHHHHcCC
Q 003163 595 MEF--D------EVKLKPTYKILWGVPGRSSAINIAERLGL 627 (843)
Q Consensus 595 v~f--d------~~~l~ptY~l~~G~~g~S~a~~iA~~~gl 627 (843)
|.+ + .+++.|+|++..|+++.|||+++|++.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 173 MEVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 987 4 26789999999999999999999999986
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.4e-34 Score=295.15 Aligned_cols=185 Identities=28% Similarity=0.519 Sum_probs=172.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
+.+++++++++ ..+++++|+||||+||||+||+++++.+++|+|+++|+ ....++++++++..++..+++....|+|+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa-~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPA-EYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcch-hhcCccChhheeEecCCccccchhhhHHH
Confidence 56899999999 67799999999999999999999999999999999998 77889999999999999999999999999
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+|+++..++..+++|+|+|||||++||||.++..+..++++.+.+.+.+ +|++||+.++..+......+.+.+|.++.
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~~~ 172 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKEST-VFFATHFRDIAAILGNKSCVVHLHMKAQS 172 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhhcCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999998887 99999999999888777788888887764
Q ss_pred ---ccceeeEEEecCCCC-CChHHHHHHHcCC
Q 003163 600 ---VKLKPTYKILWGVPG-RSSAINIAERLGL 627 (843)
Q Consensus 600 ---~~l~ptY~l~~G~~g-~S~a~~iA~~~gl 627 (843)
+++.|+|++..|++. .|||+++|+.+.+
T Consensus 173 ~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~~ 204 (204)
T cd03282 173 INSNGIEMAYKLVLGLYRIVDDGIRFVRVLAL 204 (204)
T ss_pred cCCCceeeEEEEeeCCCCCCccHHHHHHHhhC
Confidence 678899999999999 9999999998753
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=3.7e-33 Score=283.97 Aligned_cols=181 Identities=43% Similarity=0.651 Sum_probs=169.4
Q ss_pred EEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCC
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 535 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p 535 (843)
+++|||||||||||+||+|+...+++|.|+++|+ ....++++++++..++..+++..++|+|+++++++..++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-ESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-hheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999999999999999999 779999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEecc--cceeeEEEecCC
Q 003163 536 SLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGV 612 (843)
Q Consensus 536 ~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~--~l~ptY~l~~G~ 612 (843)
+|+|+|||++||||.++..+...+++.+.+. +++ +|++||+.++..+++....+.+++|.++.+ .+.|+|++..|+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~-iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~ 158 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGAL-TLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGV 158 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECC
Confidence 9999999999999999999988899988874 776 999999999999998888999999988764 488999999999
Q ss_pred CCCChHHHHHHHcCCCHHHHHHHHHH
Q 003163 613 PGRSSAINIAERLGLPGIVVQNARQL 638 (843)
Q Consensus 613 ~g~S~a~~iA~~~gl~~~ii~~A~~~ 638 (843)
++.|||+.+|++.|+|++++++|+++
T Consensus 159 ~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 159 AGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999874
No 21
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=5.2e-33 Score=286.43 Aligned_cols=184 Identities=41% Similarity=0.573 Sum_probs=171.0
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhH
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 520 (843)
..+|++|++++. +++++|+||||||||||||+|++..++++.|.++|+ ....++++++++..++..+++...+|+|+.
T Consensus 17 ~~~~~~~~~l~~-~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~ 94 (202)
T cd03243 17 ETFVPNDINLGS-GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-ESASIPLVDRIFTRIGAEDSISDGRSTFMA 94 (202)
T ss_pred CceEeeeEEEcC-CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-cccccCCcCEEEEEecCcccccCCceeHHH
Confidence 568999999995 478999999999999999999988889999999998 778899999999999999999999999999
Q ss_pred HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003163 521 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 521 ~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
+++++..++..+.+|+++|||||++||||.++..+...+++.+.+.+.+ +|++||+.++...++....+.+++|.++.+
T Consensus 95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~-vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~ 173 (202)
T cd03243 95 ELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR-TLFATHFHELADLPEQVPGVKNLHMEELIT 173 (202)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEECChHHHHHHhhcCCCeEEEEEEEEec
Confidence 9999999999999999999999999999998988887888888888887 999999999999999999999999998875
Q ss_pred --cceeeEEEecCCCCCChHHHHHHHcCC
Q 003163 601 --KLKPTYKILWGVPGRSSAINIAERLGL 627 (843)
Q Consensus 601 --~l~ptY~l~~G~~g~S~a~~iA~~~gl 627 (843)
++.++|++..|.++.|||+.+|+++|+
T Consensus 174 ~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 174 TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 689999999999999999999999986
No 22
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=99.98 E-value=2e-31 Score=290.07 Aligned_cols=291 Identities=18% Similarity=0.192 Sum_probs=235.3
Q ss_pred HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCCCchhHHHHHHhcccCCCCCH
Q 003163 62 LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139 (843)
Q Consensus 62 i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~~~~i~~~~v~~~l~ra~~g~~L~~ 139 (843)
++..| .+|.|++|++.++.|+..|..+..+++++++.+.++.. .+... ....+.++. |+.+.+.++..| .+++
T Consensus 4 L~~~l-~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~-l~~~L~~~~--Di~~~l~~~~~~-~~~~ 78 (308)
T smart00533 4 LFELL-NHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQK-LRQLLKRIP--DLERLLSRIERG-RASP 78 (308)
T ss_pred HHHHH-ccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHH-HHHHHccCC--cHHHHHHHHHcC-CCCH
Confidence 45555 47999999999999765567899999999999999997 33221 123477776 488899998877 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHH----HHHhcccchHHHHHHhhhcCCC-CcccCCCCHHHHHH
Q 003163 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQ----MIMQLFVNRSLIKSIMQVVDED-GSIKDSASPALKQS 214 (843)
Q Consensus 140 ~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~----l~~~l~~~~~l~~~I~~~id~~-G~v~D~AS~~L~~i 214 (843)
.|+..+..++.++..+++++.... ...+. +.+.. +...+..+.++...+..+++++ |.|+|+||++|+.|
T Consensus 79 ~el~~l~~~l~~~~~l~~~l~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~l 153 (308)
T smart00533 79 RDLLRLYDSLEGLKEIRQLLESLD---GPLLG--LLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDEL 153 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---cHHHH--HHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHH
Confidence 999999999999999988775421 00000 11111 1222333445555566666666 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc--ceeeeCCEEEEEecCCCc-ccceEEe--cccCceeEEeeccccccHHHH
Q 003163 215 RGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLL--SSSGIGSVIEPLSAVPLNDEL 289 (843)
Q Consensus 215 R~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~vt~r~gR~vipVk~~~k-~~~giv~--~~sg~t~~iEP~~~v~lnn~l 289 (843)
|++++.++.++.+.++.+.++... ...+ .++.+ | |||+|+.+++ ++||.+| |+||+++|++|..+++|||++
T Consensus 154 r~~~~~l~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-g-~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~ 230 (308)
T smart00533 154 REKLEELEEELEELLKKEREELGI-DSLKLGYNKVH-G-YYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENEL 230 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CceEEeEeccE-E-EEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHH
Confidence 999999999999999999876543 2233 34544 4 9999999999 9999998 679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCcccccccCCCCcccccCC
Q 003163 290 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSS 369 (843)
Q Consensus 290 ~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 369 (843)
.++..++.+++.+|+++|+..+..+.+.|..+.+++++||+++|+|.+|.++++|+|.|++
T Consensus 231 ~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~------------------- 291 (308)
T smart00533 231 LEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVD------------------- 291 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999973
Q ss_pred ccccceEEeccccchhHH
Q 003163 370 SEREWTIYLPKAYHPLLL 387 (843)
Q Consensus 370 ~~~~~~i~l~~arHPlL~ 387 (843)
...+.++++|||++.
T Consensus 292 ---~~~l~i~~~rHPlle 306 (308)
T smart00533 292 ---SGELEIKNGRHPVLE 306 (308)
T ss_pred ---CCCEEEeeCCCCccc
Confidence 235999999999984
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=2.8e-31 Score=273.39 Aligned_cols=183 Identities=28% Similarity=0.441 Sum_probs=161.3
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhH
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 520 (843)
+++|+++++++.+ ++++|+||||||||||||+|++..++++.|.++|+ ....+. ++.+|..++..+++..+++.|..
T Consensus 13 ~~~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a-~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 13 EKRVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA-SSFELP-PVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CCeecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec-CccCcc-cceEEEeccchhccccccChHHH
Confidence 4689999999965 89999999999999999999999999999999998 555666 67788899999999999999988
Q ss_pred HhHHHHHHHHhCC--CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE--E
Q 003163 521 HLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM--E 596 (843)
Q Consensus 521 ~~~~l~~il~~a~--~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v--~ 596 (843)
++.++..++..+. +|+++|||||++|||+.++..+...+++.+.+.+.+ +|++||+.++....+....+.+.++ .
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t-iiivTH~~~~~~~~~~~~~v~~~~~~~~ 168 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI-GIISTHDLELADLLDLDSAVRNYHFRED 168 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEcCcHHHHHhhhcCCCeEEEEEEEE
Confidence 9999999999888 999999999999999988888877788888877887 9999999999987766777777654 4
Q ss_pred EecccceeeEEEecCCCCCChHHHHHHHcCC
Q 003163 597 FDEVKLKPTYKILWGVPGRSSAINIAERLGL 627 (843)
Q Consensus 597 fd~~~l~ptY~l~~G~~g~S~a~~iA~~~gl 627 (843)
++...+.|+|++..|+++.|+|+++|++.|+
T Consensus 169 ~~~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 169 IDDNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred EECCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 4567789999999999999999999999885
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.87 E-value=6.8e-22 Score=209.21 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=120.2
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh--------------------ccccccccccccc-----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--------------------AKSGLHILSSEYA----- 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~--------------------~q~G~~vpa~~~~----- 493 (843)
+++.+.++++|+ +.|++++|+||||||||||||+|+++... ++.-.|+|.....
T Consensus 13 ~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 13 GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 468899999999 89999999999999999999999754221 1111233321110
Q ss_pred --------c---cch-----------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 494 --------K---VPW-----------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 494 --------~---i~~-----------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+ .++ ..+.+..++..+...+.+.++||+.++++.+ .+++++|+++||||||++||+.
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~ 172 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHH
Confidence 0 111 2233566777777788888999877666655 5679999999999999999997
Q ss_pred hHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
....+. .++..+. ++|.| ||+|+||.+++ .||++...+.+|.+...+
T Consensus 173 ~Q~evl-~ll~~l~~~~~~t-vv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 173 HQIEVL-ELLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred HHHHHH-HHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 777775 5667777 56887 99999999988 699999999999998765
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=8.7e-22 Score=207.48 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=113.8
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------ccccccccccc-----------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEYA----------- 493 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------~G~~vpa~~~~----------- 493 (843)
.|+.+++|+ ..|++++|+||||||||||+|+|.++....+ .-.|+|.....
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 699999999 8899999999999999999999966432111 11245542110
Q ss_pred -------ccc-----------hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 494 -------KVP-----------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 494 -------~i~-----------~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
..+ .++..+..+|..+.....++.+||++++.+.+ .+++++|+|+||||||+|+|+.....
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 111 12345667788888888889999876655555 56799999999999999999955555
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+ ..++..+++.|+| ||++|||.... .++|++..+ |.++.+.
T Consensus 178 i-~~lL~~l~~eg~t-Il~vtHDL~~v~~~~D~vi~L-n~~~~~~ 219 (254)
T COG1121 178 I-YDLLKELRQEGKT-VLMVTHDLGLVMAYFDRVICL-NRHLIAS 219 (254)
T ss_pred H-HHHHHHHHHCCCE-EEEEeCCcHHhHhhCCEEEEE-cCeeEec
Confidence 5 6888999988997 99999998776 688887665 5555543
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.5e-21 Score=197.07 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=119.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-cccc--------------------cc---cc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSS--------------------EY---AK 494 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~--------------------~~---~~ 494 (843)
|+..|+++|+++ ..|++++|+||+|||||||||||.++..... |.. +... .. ..
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~-G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS-GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC-ceEEECCEeccchhhHHHHHHhcCeeccccccccc
Confidence 567899999999 9999999999999999999999976543322 111 1000 00 00
Q ss_pred cchH----------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 495 VPWF----------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 i~~~----------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+.+. ..++..+|..+....+.+.+||++++...| .+++.+|+++|+|||||+|||+-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 0111 124667788888888888999877665555 56799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..... .++..|++.|.| .|+|||++.|+ ..|++++.+..|.+....
T Consensus 172 v~EVL-~vm~~LA~eGmT-MivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 172 VGEVL-DVMKDLAEEGMT-MIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHH-HHHHHHHHcCCe-EEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 77764 677889999998 99999999999 589999999999776543
No 27
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=3.3e-21 Score=209.89 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=116.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc--------------cccccccc--ccc---
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--------------LHILSSEY--AKV--- 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G--------------~~vpa~~~--~~i--- 495 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .|+|.... ..+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~ 96 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR 96 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHH
Confidence 47899999999 8899999999999999999999976543211 01 12222100 000
Q ss_pred ------------------chHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 496 ------------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 496 ------------------~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
..++.++..++........+++||++|++...+ .+++.+|+|+||||||+||||.....+
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~- 175 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI- 175 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH-
Confidence 112234555666554455678899888766555 577999999999999999999666665
Q ss_pred HHHHHHHHhcC-CeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 557 MSLLEAFAESG-SLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 557 ~~lle~L~~~g-~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..+.+.| .| ||++||+++.. .+|+++..+.+|.+.++.
T Consensus 176 ~~~l~~l~~~g~~t-vlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 176 WELLRELAKEGGVT-ILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred HHHHHHHHhCCCcE-EEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 67778888877 66 99999998666 579999999999999876
No 28
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-20 Score=224.88 Aligned_cols=252 Identities=13% Similarity=0.050 Sum_probs=155.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------ccccccccc----ccchH------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA----KVPWF------ 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~~----~i~~~------ 498 (843)
+++.++.+++|. ..|++++|+||||||||||||+|++..... .| .|++..... ....+
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCCEEEEEecCcchhhCCccchHHHHHHHh
Confidence 346789999999 889999999999999999999997653211 11 122221000 00011
Q ss_pred ---------HHHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC
Q 003163 499 ---------DSVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 567 (843)
Q Consensus 499 ---------~~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g 567 (843)
..++..++.. ......++++|+++++...+ ..++.+|+||||||||+|||+.....+.. ++..+ +
T Consensus 402 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~-~L~~~---~ 477 (638)
T PRK10636 402 APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE-ALIDF---E 477 (638)
T ss_pred CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHHc---C
Confidence 1233444543 34566778889877665554 56688999999999999999977766654 33333 4
Q ss_pred CeEEEEEccchhHH-hhhccccceeeeEEE-EecccceeeEE--EecCCC-CCChH-HH-HHHHcCC-CH-H------HH
Q 003163 568 SLLTIATTHHGELK-TLKYSNDFFENACME-FDEVKLKPTYK--ILWGVP-GRSSA-IN-IAERLGL-PG-I------VV 632 (843)
Q Consensus 568 ~t~vlitTHd~el~-~~a~~~~~v~ng~v~-fd~~~l~ptY~--l~~G~~-g~S~a-~~-iA~~~gl-~~-~------ii 632 (843)
+| ||+||||.++. .+|+++..+.+|.+. +++.. . .|. ...... ....+ .. -...... +. + -.
T Consensus 478 gt-vi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (638)
T PRK10636 478 GA-LVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDL-E-DYQQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAEL 554 (638)
T ss_pred Ce-EEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCH-H-HHHHHHhhhhhhhhhhccccccccccccccchhhhhHHHHH
Confidence 56 99999999887 589999999999986 44321 1 120 000000 00000 00 0000000 00 0 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 633 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH-------FLMLSRNLHKNLLRTRRKILEHCASQRFRK 699 (843)
Q Consensus 633 ~~A~~~~~~~~~~~e~~i~~Le~~~~~~e~~~~~~~~-------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 699 (843)
........++..++|+.|++||.++.++++++.+... ...++.+.+++++.++++++++|+++..+.
T Consensus 555 ~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 555 RTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001122334457889999999999999998876532 456667777888888889999998776544
No 29
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=5.6e-21 Score=196.89 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=115.8
Q ss_pred cCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------ccccccccc---ccchH
Q 003163 439 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------LHILSSEYA---KVPWF 498 (843)
Q Consensus 439 ~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------~~vpa~~~~---~i~~~ 498 (843)
-+++.+.++++|. +.|++++++||||+||||++|+|.++.-..+ .| .|.|. +.+ .+.+.
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE-ERGLy~k~tv~ 90 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE-ERGLYPKMTVE 90 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh-hhccCccCcHH
Confidence 3678899999999 9999999999999999999999965432211 11 13443 211 11222
Q ss_pred HH---------------------HHhhcCchhhHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 DS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~~---------------------i~~~ig~~q~i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
++ ++..++........+.++|.++ +.+..+.+.+.+|.|+|||||||||||.....+-
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk 170 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHH
Confidence 22 2333444444444555667655 4566667789999999999999999998888876
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..+ ..+++.|+| ||++||.++.+ .+||+...+..|+..+++
T Consensus 171 ~~I-~~lk~~Gat-IifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 171 DAI-FELKEEGAT-IIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred HHH-HHHHhcCCE-EEEecchHHHHHHHhhhhheecCCceEEec
Confidence 554 557999998 99999999887 699999999999988875
No 30
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=1.3e-20 Score=194.54 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=114.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------------------ccccc-cccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHI-LSSEYA 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------------------~G~~v-pa~~~~ 493 (843)
|++.|.++++|+ ..|++++|+||+|+|||||||+|+++..... .|... .+.-.+
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 678999999999 9999999999999999999999965432211 11000 000112
Q ss_pred ccchHHHH----------------------HhhcCchhh-HhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCCh
Q 003163 494 KVPWFDSV----------------------FADIGDEQS-LSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 ~i~~~~~i----------------------~~~ig~~q~-i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+++++ +...|.... .+...|.+||+|++.+.++ +.+.+|+|+++||||+||||
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 22222222 223454444 5566688899997766554 56899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+ ..++..|++. |.| ++++|||.+-. ..||+...+.+|++.+.+
T Consensus 179 I~a~~~-~~LI~~L~~~lg~T-~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 179 ISAGVI-DELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred chHHHH-HHHHHHHHHhhCCE-EEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 776666 5666677765 776 99999997554 799999999999999875
No 31
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.6e-20 Score=187.34 Aligned_cols=154 Identities=17% Similarity=0.201 Sum_probs=114.9
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc--------cc----------c---------cccc
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL--------SS----------E---------YAKV 495 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp--------a~----------~---------~~~i 495 (843)
+..|++|. .+|++++|.||||+||||+||+|+.+..+.+.-..+. .. + .-.+
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl 96 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENL 96 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHH
Confidence 68899999 9999999999999999999999986655443111110 00 0 0011
Q ss_pred chHHH---------------HHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 496 PWFDS---------------VFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 496 ~~~~~---------------i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
.+|.. +...++..+.+......||.+|++...|+ +++.+|++++||||++|||......+ ..+
T Consensus 97 ~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~df 175 (245)
T COG4555 97 KYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HDF 175 (245)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HHH
Confidence 22222 22344555666677778998888776665 56899999999999999999766665 577
Q ss_pred HHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 560 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+..+++.|.+ ||++||.++.. .+||+++.+.+|.+.+..
T Consensus 176 i~q~k~egr~-viFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 176 IKQLKNEGRA-VIFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred HHHhhcCCcE-EEEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 7888888887 99999998666 599999999999998754
No 32
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=4.2e-20 Score=187.07 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=115.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccc----------ccccchHHHHHhhcCchhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE----------YAKVPWFDSVFADIGDEQS 510 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~----------~~~i~~~~~i~~~ig~~q~ 510 (843)
+.++.+++|+ .+|++++|+||||+|||||+++|+++... ..|....... ...+.+..+++..++..+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~ 90 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHL 90 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhH
Confidence 5689999999 89999999999999999999999775432 2342211100 1134455556777788777
Q ss_pred HhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccc
Q 003163 511 LSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSN 587 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~ 587 (843)
+......+|+++++... +.+++.+|+++||||||+|+|+.....+. .++..+.+. +.+ +|++||+.+.. .+++++
T Consensus 91 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~~ 168 (180)
T cd03214 91 ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKT-VVMVLHDLNLAARYADRV 168 (180)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEE
Confidence 77777889977665544 45678999999999999999997766664 566666655 776 99999998876 789999
Q ss_pred cceeeeEEEE
Q 003163 588 DFFENACMEF 597 (843)
Q Consensus 588 ~~v~ng~v~f 597 (843)
..+.+|.+..
T Consensus 169 ~~l~~g~i~~ 178 (180)
T cd03214 169 ILLKDGRIVA 178 (180)
T ss_pred EEEECCEEEe
Confidence 9999988753
No 33
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.83 E-value=2.2e-19 Score=214.90 Aligned_cols=249 Identities=14% Similarity=0.065 Sum_probs=147.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------cccccccc---cccchHHH-----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY---AKVPWFDS----- 500 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~---~~i~~~~~----- 500 (843)
+++.++.+++|. ..|++++|+||||||||||||+|++..... .| .|++.... ....+++.
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhc
Confidence 345789999999 889999999999999999999997653211 11 12222100 01111111
Q ss_pred --------------HHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 501 --------------VFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 501 --------------i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
++..++.. +.....++++|+++++...+ .+++.+|++|||||||+|||+.....+. +.+.
T Consensus 409 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~----~~l~ 484 (635)
T PRK11147 409 QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE----ELLD 484 (635)
T ss_pred ccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHH
Confidence 22233332 33455667888877665554 5668899999999999999996655443 3334
Q ss_pred hcCCeEEEEEccchhHH-hhhcccccee-eeEEEEecccceeeEEEecC-CC-CCChHHHHHHHcCCCHH-HHHH--H--
Q 003163 565 ESGSLLTIATTHHGELK-TLKYSNDFFE-NACMEFDEVKLKPTYKILWG-VP-GRSSAINIAERLGLPGI-VVQN--A-- 635 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~-~~a~~~~~v~-ng~v~fd~~~l~ptY~l~~G-~~-g~S~a~~iA~~~gl~~~-ii~~--A-- 635 (843)
+.++| ||+||||.++. .+|+++..+. +|.+..-..+.. .|.-... .. ....+-.-...-.-+.. --.+ +
T Consensus 485 ~~~~t-vi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
T PRK11147 485 SYQGT-VLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH-DARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKL 562 (635)
T ss_pred hCCCe-EEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH-HHHHHHHHHHhhhhhhccccccccccccchhhhhhhhh
Confidence 44566 99999998877 5899998887 787754332211 1200000 00 00000000000000000 0000 0
Q ss_pred -HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 636 -RQLYGAASAEINEVIIEMERFKTQFLEHVHEARH------FLMLSRNLHKNLLRTRRKILEHCASQR 696 (843)
Q Consensus 636 -~~~~~~~~~~~e~~i~~Le~~~~~~e~~~~~~~~------~~~~~~~~~~~l~~~~~~l~~~~~~~~ 696 (843)
.....+ ...+|+.|++||.++.++++++.+... ...++.+.++++++++++++++|+++.
T Consensus 563 ~~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 563 SYKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222 567888888888888888888866531 456666777777888888888887665
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.8e-20 Score=194.02 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=115.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc-----cc----------ccccccccccch-------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GL----------HILSSEYAKVPW------- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~-----G~----------~vpa~~~~~i~~------- 497 (843)
+..|+.+++|+ ..|++++|+||+|||||||||+|+++...... |. ++.. +..-+||
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ-~~~LlPW~Tv~~NV 93 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ-EDALLPWLTVLDNV 93 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec-cCcccchhhHHhhh
Confidence 46799999999 99999999999999999999999876533221 11 1111 1111121
Q ss_pred -----------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 498 -----------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 498 -----------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
....+..+|..+.-......+||+|++...|+ +++.+|++|||||||++||...+..+-..+
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l 173 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence 22345566666667777788999998776665 568999999999999999999999988888
Q ss_pred HHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 560 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
++.+.+.+.| |++||||.+.+ .+++++..+.+
T Consensus 174 ~~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 174 LRLWEETRKT-VLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecC
Confidence 8877888887 99999998777 57888888877
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.82 E-value=4.8e-20 Score=201.64 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=112.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+..
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 45789999999 899999999999999999999997653211 11 12221100 00011
Q ss_pred ---------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 ---------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ---------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
+..++..++.........+++|+++++...+ .+++.+|++|||||||+||||.....+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 1122344455555556667889877665554 567899999999999999999666666
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..+.+.|.| ||++||+++.. .+|+++..+.+|.+....
T Consensus 164 -~~~l~~~~~~g~t-vi~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 164 -WDYIRALKEEGVT-ILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred -HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 5667777777887 99999998776 689999999999987653
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=5.5e-20 Score=201.60 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=112.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~ 496 (843)
++..++++++|+ ..|++++|+||||||||||+|+|.++.... .| .++|.... ..+.
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~-~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 346799999999 889999999999999999999997653221 11 12222100 0011
Q ss_pred hHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
..+ .++..++........++++|+++++... +.+++.+|++|||||||+||||.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~ 176 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHH
Confidence 111 1122334444444556788888766554 456789999999999999999976666
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+ +.++..+.+.|.| ||++||+++.. .+|+++..+.+|++.++.
T Consensus 177 l-~~~l~~l~~~g~t-ill~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 177 M-WERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred H-HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 6 5677777777887 99999998876 689999999999998764
No 37
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=5.2e-20 Score=191.47 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=109.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-ccccc-------------ccccch---------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSE-------------YAKVPW--------- 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~~-------------~~~i~~--------- 497 (843)
..++.+++|+ ..|++++|+||+||||||||++||++.-. ..|.+ +.... ...+++
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 4689999999 99999999999999999999999876443 11221 11000 000110
Q ss_pred -------------------------HHHHHhhcCchhhHh-hhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 -------------------------FDSVFADIGDEQSLS-QSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 -------------------------~~~i~~~ig~~q~i~-~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
...++..+|..+... ...+.+||+.+|.. .+.+++.+|++||.||||.+||+.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 112233445554444 55677887665554 445679999999999999999998
Q ss_pred hHHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 551 EGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 551 e~~al~~~lle~L~-~~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
.+..+. .++..+. +.|.| +|+||||.+++.+|++++.+.+|.+
T Consensus 177 t~~~V~-~ll~~~~~~~g~t-ii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 177 TAKEVL-ELLRELNKERGKT-IIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHH-HHHHHHHHhcCCE-EEEEcCCHHHHHhCCEEEEEeCCee
Confidence 888886 4555555 55887 9999999999999999999999984
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=6.3e-20 Score=203.83 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=112.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc--------------cccccccc--cccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--------------LHILSSEY--AKVPW 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G--------------~~vpa~~~--~~i~~ 497 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ..+.+
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 456799999999 8999999999999999999999976532111 00 12222100 01111
Q ss_pred HH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+ .++..++..+.......+||++|++...+ .+++.+|++|||||||+||||.....+
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 11 12223343344445566788887766555 567899999999999999999777766
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..+.+.|.| ||++||+++.. .+|+++..+.+|.+.++.
T Consensus 212 -~~~l~~l~~~g~t-ilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 212 -WERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred -HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5666677777887 99999998776 699999999999998765
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.3e-19 Score=187.77 Aligned_cols=154 Identities=20% Similarity=0.164 Sum_probs=106.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------cccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~--~~i~~~ 498 (843)
++.++.+++|+ ..|++++|+||||||||||+|+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 35689999999 88999999999999999999999765321 111 12221100 001111
Q ss_pred H---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 D---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+ .++..++...........+|+++++... +.+++.+|+++||||||+|||+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 170 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 1223344444444555678877665554 45678999999999999999997777665
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 557 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 557 ~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
.++..+.+ .|.+ ||++||+.++. .+|+++..+.+|.+..
T Consensus 171 -~~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 171 -EELKELQRELGIT-TIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred -HHHHHHHHHcCCE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 55566655 4777 99999998765 7899999999998754
No 40
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=9.1e-20 Score=189.14 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=113.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----------------------------cccccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----------------------------AKSGLHILSS 490 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----------------------------~q~G~~vpa~ 490 (843)
+++.+.++++|+ .+|++++++||+||||||+||+|..+.-. .|.|+|..-.
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 467899999999 99999999999999999999999543211 1122221000
Q ss_pred cccccch---------------HHHHHhhcCch--hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 491 EYAKVPW---------------FDSVFADIGDE--QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 491 ~~~~i~~---------------~~~i~~~ig~~--q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
-.-.+.. .+.++..+|.. +......+.+||+.++...+ .+++.+|+++||||||+++||..+
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R 171 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhH
Confidence 0000000 12334445543 45667778888876655554 567899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
..+-..+.+.-++.|.| ||+||||++.+ .+++++..+..|.+..
T Consensus 172 ~~lQ~e~~~lq~~l~kT-ivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 172 KQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred HHHHHHHHHHHHHhCCE-EEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 99876666655566887 99999998777 7999999999888864
No 41
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.5e-19 Score=186.29 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=118.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh------------------------hcccccc------cc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM------------------------MAKSGLH------IL 488 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~------------------------~~q~G~~------vp 488 (843)
+++.++.+|+|+ +.|++++|+||+|||||||||+|.++.- ..++|+. +|
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 678899999999 9999999999999999999999965321 1122221 11
Q ss_pred cc---------cccccchHH---------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecC
Q 003163 489 SS---------EYAKVPWFD---------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEI 543 (843)
Q Consensus 489 a~---------~~~~i~~~~---------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP 543 (843)
.. .-...+.+. ..+..+|..+...+.-+++||+.++...| .+++++|+++|-|||
T Consensus 95 r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 95 RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 00 000111111 12456677777778888999877666555 467899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003163 544 GAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~ 600 (843)
+++|||.....+. .++..+. +.|.| +|++.|+.+++ .||++++++.+|++.||+.
T Consensus 175 vasLDp~~a~~Vm-~~l~~in~~~g~T-vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 175 VASLDPESAKKVM-DILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred ccccChhhHHHHH-HHHHHHHHHcCCE-EEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 9999998888775 4555555 45787 99999999998 6999999999999999963
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-19 Score=187.54 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=108.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ..+..
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 45689999999 88999999999999999999999765321 111 12221100 00111
Q ss_pred HH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+ .++..++...........+|+++++. ..+.+++.+|+++||||||+|||+.....+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 12333444444455566788766555 555577899999999999999999777766
Q ss_pred HHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 556 GMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 556 ~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
. .++..+... |.+ ||++||+.+.. .+++++..+.+|.+...
T Consensus 171 ~-~~l~~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 171 W-EYIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred H-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 5 555556554 777 99999998776 68999999999998754
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=1.6e-19 Score=186.21 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=105.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------cccccccc---cccchHH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY---AKVPWFD 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------~~vpa~~~---~~i~~~~ 499 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|.... ....+.+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 5689999999 89999999999999999999999765321 111 12222100 0001111
Q ss_pred -----------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 500 -----------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 500 -----------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
.++..++..+........+|+++++...+ .+++.+|+++||||||+|||+.....+ ..++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIR 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHH
Confidence 22333444444444556788776655544 567899999999999999999776666 45666
Q ss_pred HHHhcCCeEEEEEccchhHH-hhhccccceeeeEE
Q 003163 562 AFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 595 (843)
Q Consensus 562 ~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v 595 (843)
.+.+.|.+ +|++||+.+.. .+|+++..+.+|++
T Consensus 171 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 171 ELAAQGKA-VIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 67666887 99999998776 58999988888875
No 44
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=2.6e-19 Score=184.90 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=109.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc--ccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~--~i~~~ 498 (843)
+..++++++|+ ..|++++|+|||||||||||++|+++... ..| .++|..... ...+.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 45799999999 89999999999999999999999765321 111 122221000 01111
Q ss_pred H-----------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 499 D-----------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 499 ~-----------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
+ .++..++...........+|+++++. ..+.+++.+|+++||||||+|||+.....+. .++
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 169 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR-ELI 169 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHH
Confidence 1 12334444445555667788776655 4556678999999999999999997777664 566
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 561 EAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
..+.+.|.+ +|++||+.++. .+++++..+.+|.+..
T Consensus 170 ~~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 170 LSLRDQGIT-VLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHCCCE-EEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 666667787 99999998876 6899999999988753
No 45
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.81 E-value=1.9e-19 Score=197.03 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=110.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+.+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD-RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 45689999999 899999999999999999999997653211 11 12221100 00111
Q ss_pred HHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+. ++..++..+......+++|+++++... +.+++.+|++|||||||+||||.....+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 111 222334444444556778887766554 4567899999999999999999776666
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 175 -~~~l~~~~~~g~t-il~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 175 -WERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred -HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 4566667767887 99999998876 689999999999987654
No 46
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=1.8e-19 Score=179.78 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=100.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccc-cccchHHHHHhhcCchhhHhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTF 518 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~-~~i~~~~~i~~~ig~~q~i~~~lstf 518 (843)
++.++.+++|+ .+|++++|+||||+||||||++|+++... ..|........ ......+.....++. +..+
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qL 83 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAM-------VYQL 83 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEE-------EEec
Confidence 34689999999 89999999999999999999999765432 22322111000 000000000111111 1127
Q ss_pred hHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 519 SGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 519 S~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
|+++++. ..+.+++.+|+++||||||+|||+.....+. .++..+.+.+.| +|++||+.+.. .+++++..+.+|.+.
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVA-VIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7666554 5555779999999999999999997777664 566666666887 99999998754 689999999998875
Q ss_pred E
Q 003163 597 F 597 (843)
Q Consensus 597 f 597 (843)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 3
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.80 E-value=1.7e-19 Score=187.45 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=104.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc--c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--A 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~--~ 493 (843)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 5689999999 89999999999999999999999765321 111 11111000 0
Q ss_pred ccchH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+.+. ..++..+|....+.....++|+++++. ..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 00111 112333444444455566788776655 44556789999999999999999976
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeE
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENAC 594 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~ 594 (843)
...+. .++..+.+ .|.+ ||++||+.+...+|+++..+.+|.
T Consensus 176 ~~~l~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 176 GKEVM-ELLRELNKEAGTT-IVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHH-HHHHHHHHhcCCe-EEEEECCHHHHhhhcEEEEeeCCc
Confidence 66664 56666665 5787 999999988777888888887765
No 48
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.5e-19 Score=188.65 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=108.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~ 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD-SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 45689999999 899999999999999999999997653211 11 11221000 0
Q ss_pred ccchHHH----------------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChh
Q 003163 494 KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 494 ~i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
...+.++ ++..++..+......+.+|+++++... +.+++.+|+++||||||+|||+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 0111111 122233333344455678877765544 45678999999999999999997
Q ss_pred hHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
....+. .++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 171 ~~~~l~-~~l~~~~~~~~~t-vi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 171 ASGVID-DLIRSLKKELGLT-SIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHH-HHHHHHHHhcCcE-EEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 666664 56666665 4787 99999998765 689999999999987653
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.6e-19 Score=186.58 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=106.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------cccccccc--cccchHH---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFD--- 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------~~vpa~~~--~~i~~~~--- 499 (843)
+.++++++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ....+.+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 5689999999 88999999999999999999999765322 112 12222100 0011111
Q ss_pred ------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 500 ------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 500 ------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
.++..++..+.+....+.+|+++++. ..+.+++.+|+++||||||+|||+.....+. .++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~-~~l 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ-EEL 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH-HHH
Confidence 12233444444455566788777555 4455678999999999999999997777765 555
Q ss_pred HHHH-hcCCeEEEEEccchhHH-hhhcccccee--eeEEEEe
Q 003163 561 EAFA-ESGSLLTIATTHHGELK-TLKYSNDFFE--NACMEFD 598 (843)
Q Consensus 561 e~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~--ng~v~fd 598 (843)
..+. +.|.+ ||++||+.+.. .+|+++..+. +|.+...
T Consensus 175 ~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~~~G~i~~~ 215 (220)
T cd03293 175 LDIWRETGKT-VLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215 (220)
T ss_pred HHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCCCEEEEE
Confidence 5554 45777 99999998754 7899998888 6887643
No 50
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.3e-19 Score=184.43 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=107.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------cccccccc--cccchHH-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------LHILSSEY--AKVPWFD- 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------~~vpa~~~--~~i~~~~- 499 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|.... ....+.+
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 45689999999 89999999999999999999999765321 111 12221100 0011111
Q ss_pred --------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHH
Q 003163 500 --------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 558 (843)
Q Consensus 500 --------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ 558 (843)
+++..++...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~-~ 169 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK-D 169 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-H
Confidence 12233444444445556788776655 4555678999999999999999997776665 5
Q ss_pred HHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 559 LLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 559 lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
++..+.+.+.+ ||++||+.+.. .+++++..+.+|.+..
T Consensus 170 ~l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 170 VIRELARAGKT-VILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHCCCE-EEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 66666666777 99999998776 6899999999988754
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=2.2e-19 Score=186.55 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=104.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT-RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 4689999999 899999999999999999999997653211 11 11221000 00
Q ss_pred cchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.+ .++..++..........++|+++++. ..+.+++.+|+++||||||+|||+...
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 11111 12233444444455556788766555 455567899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 594 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~ 594 (843)
..+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.
T Consensus 175 ~~l~-~~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 175 RDIM-RLFEEFNRRGTT-VLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 7765 566666666787 99999998876 5888888887765
No 52
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=180.02 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=111.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------ccc-cccccccc---c
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL-HILSSEYA---K 494 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~-~vpa~~~~---~ 494 (843)
+++.|.++++|+ ..|+++++.||||+||||.+.+|.++..... .|. |+|. +.+ .
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQ-E~SIFr~ 93 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQ-EASIFRK 93 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccc-cchHhhc
Confidence 467899999999 9999999999999999999999966543221 121 3332 211 1
Q ss_pred cchHHHHH-----------------------hhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 495 VPWFDSVF-----------------------ADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 495 i~~~~~i~-----------------------~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.+.+++. ..|.......+.-.++||+.++...| .+++.+|+++||||||+|.||.
T Consensus 94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 (243)
T ss_pred CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence 12222221 11222111122223456655555444 5678999999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd-~el~~~a~~~~~v~ng~v~fd~ 599 (843)
....+ ..++..|+++|.. |++|-|+ .+...+|++...+..|++.+.+
T Consensus 174 aV~dI-q~iI~~L~~rgiG-vLITDHNVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 174 AVIDI-QRIIKHLKDRGIG-VLITDHNVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred hHHHH-HHHHHHHHhCCce-EEEccccHHHHHhhhheEEEEecCeEEecC
Confidence 88777 6789999999997 9999998 5666899999999999998764
No 53
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.80 E-value=3.9e-19 Score=190.27 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=110.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------cccccccc--cccchH---
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWF--- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------~~vpa~~~--~~i~~~--- 498 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... ....+.
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-AGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHH
Confidence 45689999999 889999999999999999999997653211 11 12222100 000111
Q ss_pred ------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-
Q 003163 499 ------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA- 564 (843)
Q Consensus 499 ------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~- 564 (843)
..++..++.........+.+|+++++... +.+++.+|+++||||||+|||+.....+. .++..+.
T Consensus 103 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~ 181 (257)
T PRK11247 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ-DLIESLWQ 181 (257)
T ss_pred HhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHH
Confidence 12334455555555666788887766554 45678999999999999999997777665 4555554
Q ss_pred hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 565 ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.+.+ ||++||+.++. .+|+++..+.+|.+..+.
T Consensus 182 ~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 182 QHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 45777 99999998875 689999999999987653
No 54
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=3.1e-19 Score=185.89 Aligned_cols=151 Identities=19% Similarity=0.155 Sum_probs=104.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------ccccccccc--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA-- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~~-- 493 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .+++.....
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 4689999999 89999999999999999999999765321 111 122210000
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.....+ .++..+|....+.....++|+++++.. .+.+++.+|+++||||||+|||+..
T Consensus 97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 176 (221)
T TIGR02211 97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176 (221)
T ss_pred CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence 011111 123334444444555667887766554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
...+. .++..+.+ .+.+ ||++||+.++...++++..+.+|.+
T Consensus 177 ~~~l~-~~l~~~~~~~~~t-ii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 177 AKIIF-DLMLELNRELNTS-FLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 77665 55666654 4777 9999999988877788888887765
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.80 E-value=4e-19 Score=184.03 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=107.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------cccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~--~~i~~~ 498 (843)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 35689999999 89999999999999999999999765321 111 12221000 001111
Q ss_pred H---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 D---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+ .++..++....+......+|+++++.. .+.+++.+|+++||||||+|||+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 170 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 123334444445556667887776554 445678999999999999999997777665
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 557 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 557 ~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
.++..+.+ .|.| ||++||+.+.. .+++++..+.+|.+..
T Consensus 171 -~~l~~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 171 -AELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred -HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 55556655 4787 99999998765 6899998998888753
No 56
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.80 E-value=1.6e-19 Score=180.10 Aligned_cols=132 Identities=31% Similarity=0.465 Sum_probs=99.7
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcc----------cccccccccccccchHHHHHhhcCchhhHh
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------SGLHILSSEYAKVPWFDSVFADIGDEQSLS 512 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q----------~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~ 512 (843)
.+++++.+..+ ++++|+|||||||||+|++++....+++ .|.++|+ ....+ ++..++
T Consensus 11 ~~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-----i~~~~~------ 77 (162)
T cd03227 11 FVPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA-VSAEL-----IFTRLQ------ 77 (162)
T ss_pred EeccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee-eEEEE-----ehheee------
Confidence 47888888754 6899999999999999999998888887 7777776 33222 233222
Q ss_pred hhhhhhhHHhHHHHHHHHhCC--CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 513 QSLSTFSGHLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~~a~--~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
+|....++..+..++.... +|+++|||||++||||.++..+...+.+.+.+ +++ +|++||+.++..++++...+
T Consensus 78 --lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~-vii~TH~~~~~~~~d~~~~l 153 (162)
T cd03227 78 --LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQ-VIVITHLPELAELADKLIHI 153 (162)
T ss_pred --ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEcCCHHHHHhhhhEEEE
Confidence 3443344444555555443 89999999999999999999998888877666 776 99999999999888766555
Q ss_pred e
Q 003163 591 E 591 (843)
Q Consensus 591 ~ 591 (843)
.
T Consensus 154 ~ 154 (162)
T cd03227 154 K 154 (162)
T ss_pred E
Confidence 3
No 57
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=2.8e-19 Score=184.95 Aligned_cols=149 Identities=26% Similarity=0.248 Sum_probs=103.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---cccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i~ 496 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ....
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 5689999999 899999999999999999999997653211 11 12222110 0011
Q ss_pred hHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.+ .++..++....+....+.+|+++++.. .+.+++.+|+++||||||+|||+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 122334444444555677887766554 4556789999999999999999977776
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 593 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng 593 (843)
+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|
T Consensus 173 ~~-~~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 173 LL-ELLKKLKAEGKT-IIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCC
Confidence 65 556666666787 99999998776 578888777665
No 58
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.80 E-value=3.9e-19 Score=186.54 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=107.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 45689999999 889999999999999999999997653211 11 11221000 000
Q ss_pred chHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+.+ .++..++...........+|+++++. ..+.+++.+|++|||||||+|||+....
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 170 (232)
T cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 1111 11222333333444556678766555 5556778999999999999999997766
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~e-l~~~a~~~~~v~ng~v~fd 598 (843)
.+. .++..+.+.+.| +|++||+.+ +..+|+++..+.+|.+...
T Consensus 171 ~~~-~~l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 171 DIQ-KIIKILKDRGIG-VLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred HHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 664 566677767887 999999986 4578999999999998654
No 59
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=2.5e-19 Score=185.83 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=109.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc---------cccc---------------cccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------ILSS---------------EYAK 494 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~---------vpa~---------------~~~~ 494 (843)
|+-.+.++++|+ ..|++++|+||||+||||++++|.++..... |.. .|+. -...
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~-G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS-GTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC-ceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 567899999999 9999999999999999999999965432211 110 1110 0111
Q ss_pred cchHHHH---------------------------------HhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEE
Q 003163 495 VPWFDSV---------------------------------FADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLL 540 (843)
Q Consensus 495 i~~~~~i---------------------------------~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLL 540 (843)
+.+++++ +..+|........-+.+|.+.+++ ..+.+++.+|.||||
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 2222222 122233333333334455554444 444577999999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|||.+|++|.+...+. .++..+.+ .|.| |+++.||+.+. .+|+++..+..|.+.+++
T Consensus 174 DEPaAGln~~e~~~l~-~~i~~i~~~~g~t-illIEHdM~~Vm~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 174 DEPAAGLNPEETEELA-ELIRELRDRGGVT-ILLIEHDMKLVMGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred cCccCCCCHHHHHHHH-HHHHHHHhcCCcE-EEEEEeccHHHhhhccEEEeccCCcCcccC
Confidence 9999999999999997 56666776 4676 99999999988 699999999999988764
No 60
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.1e-19 Score=182.60 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=107.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh-hccccccccccc------ccccchHH---HHHhhcCchhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSE------YAKVPWFD---SVFADIGDEQS 510 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~q~G~~vpa~~------~~~i~~~~---~i~~~ig~~q~ 510 (843)
+.++++++|+ ..|++++|+||||+|||||||+|++... .+..|....... ...+.+.. .++..+...++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 5689999999 8899999999999999999999987532 123342211100 01122211 12333444555
Q ss_pred Hhhhh--hhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhc
Q 003163 511 LSQSL--STFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKY 585 (843)
Q Consensus 511 i~~~l--stfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el--~~~a~ 585 (843)
+.... ..+|+++++.. .+.+++.+|+++|||||++|+|+.....+ ..++..+.+.|.+ +|++||+.+. ..+++
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~~~~t-iiivtH~~~~~~~~~~d 177 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADSGQA-ILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHHcCCE-EEEEEcCChHHHHhhCC
Confidence 54322 26887665554 55577899999999999999999666666 4566677766887 9999999863 67899
Q ss_pred cccceee-eEEEE
Q 003163 586 SNDFFEN-ACMEF 597 (843)
Q Consensus 586 ~~~~v~n-g~v~f 597 (843)
++..+.+ |.+.+
T Consensus 178 ~i~~l~~~g~i~~ 190 (192)
T cd03232 178 RLLLLKRGGKTVY 190 (192)
T ss_pred EEEEEcCCCeEEe
Confidence 9988888 88765
No 61
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.79 E-value=1.8e-19 Score=182.39 Aligned_cols=148 Identities=19% Similarity=0.162 Sum_probs=105.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-----cccccccccchH--HHHHhhcCchh-hH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----ILSSEYAKVPWF--DSVFADIGDEQ-SL 511 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-----vpa~~~~~i~~~--~~i~~~ig~~q-~i 511 (843)
...++.+++|+ ..|++++|+||||||||||||++.. ..|.. .+......+.++ .+.+..++... .+
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~ 81 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTL 81 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCcccc
Confidence 35789999999 8999999999999999999999831 11211 111011112222 23456666554 35
Q ss_pred hhhhhhhhHHhHHHHHH-HHhCCC--CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 512 SQSLSTFSGHLKQIGNI-ISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~i-l~~a~~--p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
....+++|+++++...+ .+++.+ |+++|||||++|+|+.....+. .++..+.+.|.+ ||++||+.++..+++++.
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~-~~l~~~~~~g~t-vIivSH~~~~~~~~d~i~ 159 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNT-VILIEHNLDVLSSADWII 159 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhCCEEE
Confidence 66778888877655544 456788 9999999999999997777765 455566667887 999999998888888877
Q ss_pred ceeeeEE
Q 003163 589 FFENACM 595 (843)
Q Consensus 589 ~v~ng~v 595 (843)
.+.+|..
T Consensus 160 ~l~~g~~ 166 (176)
T cd03238 160 DFGPGSG 166 (176)
T ss_pred EECCCCC
Confidence 7765544
No 62
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.79 E-value=4.8e-19 Score=193.72 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=110.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+..
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~-~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 46799999999 999999999999999999999997653211 11 12221100 00111
Q ss_pred H---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 F---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
. ..++..+|.........+.+|+++++.. .+.+++.+|+++||||||+||||.....+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 1123334544445556677888776555 45567999999999999999999666665
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..+.+ +.| ||++||+++.. .+|+++..+.+|.+.+.+
T Consensus 173 -~~~l~~~~~-~~t-iii~sH~l~~~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 173 -RNVIKNIGK-DKT-IILSTHIMQEVEAICDRVIIINKGKIVADK 214 (301)
T ss_pred -HHHHHHhcC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 556666765 676 99999998755 799999999999998754
No 63
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.79 E-value=6.4e-19 Score=183.18 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=107.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccchHH
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPWFD 499 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~~~ 499 (843)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 689999999 889999999999999999999997653211 11 11221000 0011111
Q ss_pred ---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 500 ---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 500 ---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
+++..++....+......+|+++++. ..+.+++.+|+++||||||+|||+.....+.
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~- 176 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR- 176 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-
Confidence 12334444445555666788766554 4555678999999999999999997777664
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 558 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
.++..+.+.|.+ +|++||+.+.. .+++++..+.+|.+..
T Consensus 177 ~~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 177 EFIRQLRALGKC-ILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHCCCE-EEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 566666666887 99999998765 6899999999998764
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.79 E-value=5.5e-19 Score=185.87 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ..+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 35688999999 88999999999999999999999765321 111 11221000 000
Q ss_pred chHH-------------------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecC
Q 003163 496 PWFD-------------------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEI 543 (843)
Q Consensus 496 ~~~~-------------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP 543 (843)
.+.+ .++..++.........+++|+++++.. .+.+++.+|+++|||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111 112223333334445567887766554 44567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 171 t~~LD~~~~~~l~-~~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 171 AAGLNPEETEELA-ELIRELRERGIT-VLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cccCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 9999997666664 566666667787 99999998876 68999999999998754
No 65
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.79 E-value=4.6e-19 Score=183.74 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=105.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------ccccccccc----ccchHH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEYA----KVPWFD 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------~~vpa~~~~----~i~~~~ 499 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .....+
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT-SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCccHHHHHhheEEeccccccccCCCCcHHH
Confidence 35689999999 899999999999999999999997653211 11 122221100 011111
Q ss_pred -------------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHH
Q 003163 500 -------------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 500 -------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.++..++..+.......++|+++++...+ .+++.+|+++||||||+|||+....
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 169 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 22333454444555667788877665544 5678999999999999999997777
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEE
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 595 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v 595 (843)
.+. .++..+.+.|.+ +|++||+.++. .+|+++..+.++.+
T Consensus 170 ~l~-~~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 170 DIY-ELLRELRREGMT-ILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 775 455556656777 99999998766 68898888877543
No 66
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.79 E-value=2.3e-19 Score=180.48 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=99.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc-ccc---------ccccchHHHHHhhcCchhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSE---------YAKVPWFDSVFADIGDEQS 510 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp-a~~---------~~~i~~~~~i~~~ig~~q~ 510 (843)
..++.++++. ..|++++|+||||+||||||++|+++... ..|.... ... ...+.++.+-...+. .+
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~--~t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS--GS 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEECCCCcccc--Cc
Confidence 4588999999 88999999999999999999999776432 2232111 100 011111111100010 13
Q ss_pred HhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003163 511 LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 511 i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
+..++ +|+++++ +..+.+++.+|+++||||||+|+|+.....+. .++..+.+.|.+ +|++||+.++..+|+++..
T Consensus 92 v~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 92 IAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT-RIVIAHRPETLASADRILV 167 (173)
T ss_pred HHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhCCEEEE
Confidence 33333 7766654 55556679999999999999999997777665 566666666887 9999999988888888877
Q ss_pred eeeeE
Q 003163 590 FENAC 594 (843)
Q Consensus 590 v~ng~ 594 (843)
+.+|.
T Consensus 168 l~~G~ 172 (173)
T cd03246 168 LEDGR 172 (173)
T ss_pred EECCC
Confidence 77664
No 67
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.5e-19 Score=184.84 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=105.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc--c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--A 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~--~ 493 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 4689999999 89999999999999999999999765321 111 11221000 0
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.....+ .++..+|...........+|+++++... +.+++.+|+++||||||+|||+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 001111 1223334433344455677877665554 456789999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ .|.+ ||++||+.+....++++..+.+|++..+
T Consensus 181 ~~~l~-~~l~~~~~~~g~t-vii~sH~~~~~~~~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 181 ADSIF-QLLGELNRLQGTA-FLVVTHDLQLAKRMSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHH-HHHHHHHHhCCCE-EEEEeCCHHHHHhhCEEEEEECCEEEEE
Confidence 66664 56666654 5787 9999999988876677778888887643
No 68
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.1e-19 Score=185.46 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=106.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 5689999999 89999999999999999999999765321 111 11221000 00
Q ss_pred cchHHH-----------------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 495 VPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 495 i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
..+.++ ++..++..........++|+++++. ..+.+++.+|++|||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 111111 1222333333344455678766555 4455678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd 598 (843)
+|||+.....+. .++..+.+ .|.+ ||++||+.+... +|+++..+.+|.+...
T Consensus 173 ~~LD~~~~~~l~-~~l~~~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 173 ASLDPASSRQVM-DLLKRINREEGIT-VIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred ccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999997777664 56666654 4787 999999988775 8999999999988654
No 69
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.7e-19 Score=186.43 Aligned_cols=155 Identities=16% Similarity=0.129 Sum_probs=107.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------cccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~--~~i~~~ 498 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ....+.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 45689999999 89999999999999999999999765321 111 11221000 001111
Q ss_pred H-------------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 499 D-------------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 499 ~-------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
+ .++..++..........++|+++++.. .+.+++.+|++|||||||+|||+...
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1 122333443334445567887766554 45567899999999999999999776
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 173 ~~l~-~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 173 KELR-RWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 6664 566666654 777 99999998764 68999999999998654
No 70
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.79 E-value=7.7e-19 Score=185.12 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=108.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++.+++|+ ..|++++|+||||||||||+++|+++.... .| .++|.... ....+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ-EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 45689999999 899999999999999999999997653211 11 12221100 00111
Q ss_pred HH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+ .++..+|....+......+|+++++. ..+.+++.+|+++||||||+|+|+.....+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 12233344444455566788776555 555677899999999999999999777777
Q ss_pred HHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 556 GMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 556 ~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
. .++..+.+ .|.+ +|++||+.+....|+++..+.+|.+..+
T Consensus 172 ~-~~l~~~~~~~~~t-iii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 172 V-AHVRALCRDQGLS-VLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred H-HHHHHHHHhCCCE-EEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 5 45555654 5777 9999999988877899999999988754
No 71
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.7e-19 Score=184.99 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=107.1
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------ccccccccc--cc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--KV 495 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~~--~i 495 (843)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 689999999 899999999999999999999997653211 11 122211000 01
Q ss_pred chHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+.++ .+..++....+....+.+|+++++. ..+.+++.+|+++||||||+|||+....
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 11111 2233344444455566788776554 4555678999999999999999997777
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 554 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 554 al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.+. .++..+.+. |.+ ||++||+.+.. .+++++..+.+|++..+
T Consensus 178 ~l~-~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 178 SIL-ALLRDINRELGLT-IVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 665 555566554 787 99999998876 68999999999998754
No 72
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.79 E-value=8.6e-19 Score=185.03 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=107.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------ccccccccc---cc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA---KV 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~~---~i 495 (843)
+.+.++++++|+ ..|++++|+|||||||||||++|+++.... .| .+++..... .+
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 456799999999 889999999999999999999997653211 11 122210100 01
Q ss_pred chHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
...+ .++..++..+........+|+++++.. .+.+++.+|+++||||||+|||+....
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 1111 112223444444445567887766554 455678999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 554 ALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 554 al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
.+. .++..+.+ .+.+ ||++||+.++. .+++++..+.+|.+..
T Consensus 191 ~l~-~~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 191 NIR-NFLKEYNRERGTT-VLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHH-HHHHHHHhcCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 765 55556654 4776 99999998875 6899999999998764
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.79 E-value=7.3e-19 Score=185.73 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=106.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~ 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 35689999999 88999999999999999999999765321 111 12221000 0
Q ss_pred ccchHHH-----------------------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecC
Q 003163 494 KVPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEI 543 (843)
Q Consensus 494 ~i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP 543 (843)
.+.+.++ ++..++....+......+|+++++.. .+.+++.+|+++|||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0111111 12233444444455567887766554 45567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+|+.....+. .++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 173 t~~LD~~~~~~l~-~~l~~~~~~~~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 173 IASLDPKTSKQVM-DYLKRINKEDGIT-VIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999997666664 56666654 4776 99999998876 68999999999988643
No 74
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.79 E-value=6e-19 Score=182.86 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=102.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------------------------cccccccc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEYA-- 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------------------------~vpa~~~~-- 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|.....
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 35689999999 88999999999999999999999765321 1121 12210000
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
...+.+ .++..++..+.+......+|+++++. ..+.+++.+|+++||||||+|+|+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 001111 12233344444445556788776555 44556789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 593 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng 593 (843)
...+. .++..+.+.|.+ +|++||+.+.. .+|+++..+.+|
T Consensus 173 ~~~l~-~~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 173 SERIL-DLLKRLNKRGTT-VIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEecCC
Confidence 77665 556666666887 99999998776 578888777665
No 75
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=6.7e-19 Score=182.39 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=103.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|.... ..
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 4689999999 89999999999999999999999765321 111 11121000 00
Q ss_pred cchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.+ .++..++..........++|+++++. ..+.+++.+|+++||||||+|||+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 01111 12233344444444556788776655 445567899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 594 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~ 594 (843)
..+. .++..+.+.|.+ +|++||+.+.. .+|+++..+.+|.
T Consensus 173 ~~~~-~~l~~~~~~~~t-iiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 173 WEIM-NLLKKINKAGTT-VVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 7665 555666666787 99999998877 4788888887765
No 76
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.79 E-value=7.6e-19 Score=184.00 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=104.7
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc--cc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--AK 494 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~--~~ 494 (843)
.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 589999999 899999999999999999999997653211 11 11221100 00
Q ss_pred cchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
....++ ++..++....+......+|+++++. ..+.+++.+|+++||||||+|||+...
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 111111 1223344444445556778766555 445567899999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003163 553 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACME 596 (843)
Q Consensus 553 ~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~ 596 (843)
..+. .++..+.. .|.+ ||++||+.++...++++..+.+|.+.
T Consensus 183 ~~l~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 183 DKIA-DLLFSLNREHGTT-LILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEE
Confidence 6664 55656654 4777 99999999888888888888888874
No 77
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.7e-19 Score=187.49 Aligned_cols=155 Identities=24% Similarity=0.270 Sum_probs=112.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-ccccc----------ccccc-------------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSE----------YAKVP------------- 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~~----------~~~i~------------- 496 (843)
..++.++++. ..|+.++|+||||||||||+++++++..... |.. +.... ...++
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-CEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 5789999999 8899999999999999999999977654322 211 10000 00010
Q ss_pred -h---------------------HHHHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 497 -W---------------------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 497 -~---------------------~~~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
+ ....+..+|..+.......++|++.++ ++.+..++.+|.+|||||||+||||....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 0 112344455555666677788876554 44455678999999999999999996666
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 554 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 554 al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.+ ..++..|... |.| +|++|||++.. .+|++...+.+|.+.++.
T Consensus 176 ~l-~~~l~~L~~~~~~t-ii~~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 176 EL-LELLKKLKEEGGKT-IIIVTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred HH-HHHHHHHHhcCCCe-EEEEeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 66 5677777766 576 99999998877 689999999999997664
No 78
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.79 E-value=9.4e-19 Score=183.42 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc--------ccc---cccccchHH--------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LSS---EYAKVPWFD-------- 499 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v--------pa~---~~~~i~~~~-------- 499 (843)
+++.++.+++|+ ..|++++|+||||||||||+++|+++... ..|... ... -.....+.+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~ 111 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRL 111 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHH
Confidence 456799999999 89999999999999999999999765321 112100 000 000011111
Q ss_pred -------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 500 -------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 500 -------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
.++..++....+......+|+++++. ..+.+++.+|+++||||||+|||+.....+.. ++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~-~l~~~~~ 190 (224)
T cd03220 112 LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQR-RLRELLK 190 (224)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh
Confidence 12223344444455567788776655 45556789999999999999999977777654 5555666
Q ss_pred cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 566 SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 566 ~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
.|.+ ||++||+.+.. .+++++..+.+|.+..
T Consensus 191 ~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 191 QGKT-VILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 6776 99999998776 6899999999988754
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=9.3e-19 Score=188.43 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=108.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------ccccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~~ 493 (843)
++..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 456789999999 899999999999999999999997654211 11 112210000
Q ss_pred --ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 494 --KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 --~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
...+.+ .++..++..+.+......+|+++++.. .+.+++.+|++|||||||+|||+
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~ 193 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 001111 122334444444555567887766554 55567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.. .|.+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 194 ~~~~~l~-~~l~~~~~~~g~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 194 LIRREMQ-DELLRLQAELQKT-IVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 7777665 55555654 4777 99999998765 78999999999988654
No 80
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=8e-19 Score=198.58 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=113.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc--ccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKV 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~--~~i 495 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~-sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC-CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 356799999999 999999999999999999999997653211 11 11221000 001
Q ss_pred chH-------------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 496 PWF-------------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 496 ~~~-------------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
... ...+..++..+........+|+++++... +.+++.+|++|||||||+|||+
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 111 12233345445555666778877665554 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+. .++..+.+.|.| ||++||+.++. .+|++...+.+|++..+.
T Consensus 173 ~~~~~l~-~lL~~l~~~g~T-IIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 173 NHQVRTL-ELVRRLVDDGKT-AVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 7777664 677777767887 99999999887 799999999999987654
No 81
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8.7e-19 Score=195.06 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=109.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT-SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 5689999999 899999999999999999999997653211 11 12221100 00
Q ss_pred cchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.+ .++..+|.........+++|+++++...+ .+++.+|++|||||||+|||+...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~ 176 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11111 12333444444555667788877665554 567899999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+. .++..+.+ .|.| ||++||+++.. .+|+++..+.+|.+..+
T Consensus 177 ~~l~-~~L~~l~~~~g~t-iilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 177 RSIL-ELLKDINRELGLT-IVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 7665 56666654 4787 99999998876 68999999999998754
No 82
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=186.06 Aligned_cols=155 Identities=20% Similarity=0.183 Sum_probs=106.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------cccccccc--cccchH---
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWF--- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------~~vpa~~~--~~i~~~--- 498 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .+++.... ....+.
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 35689999999 889999999999999999999997653211 11 12221100 001111
Q ss_pred ------------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 499 ------------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 499 ------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
..++..++...........+|+++++.. .+.+++.+|++|||||||+|||+.....+. .+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~ 170 (255)
T PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ-TL 170 (255)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HH
Confidence 1223344444444555677887766554 445678999999999999999997777665 55
Q ss_pred HHHHH-hcCCeEEEEEccchhHH-hhhcccccee--eeEEEEe
Q 003163 560 LEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFE--NACMEFD 598 (843)
Q Consensus 560 le~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~--ng~v~fd 598 (843)
+..+. +.|.+ ||++||+.+.. .+|+++..+. +|.+..+
T Consensus 171 L~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 171 LLKLWQETGKQ-VLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 66664 45787 99999998876 6889888887 4887654
No 83
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.1e-18 Score=188.25 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=110.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---cccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i~ 496 (843)
..++++++|+ ..|++++|+||||||||||+++|+++.... .| .+++.... ....
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ-RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 4689999999 899999999999999999999997653211 11 12222100 0001
Q ss_pred hHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.++ ++..++...........+|+++++... +.+++.+|+++||||||+|||+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 1111 222334444444555678877765544 456789999999999999999977777
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+. .++..+.+.|.| ||++||+++.. .+|+++..+.+|.+..+.
T Consensus 177 l~-~~l~~~~~~g~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 177 LM-EILDRLHNQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred HH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 64 566667666887 99999999876 799999999999987654
No 84
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=1.2e-18 Score=181.51 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=105.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ..+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 34689999999 899999999999999999999997653211 11 11221000 000
Q ss_pred chHHHH-------------------Hhhc-CchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 496 PWFDSV-------------------FADI-GDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 496 ~~~~~i-------------------~~~i-g~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
.+.+++ +..+ +...........+|+++++.. .+.+++.+|+++||||||+|||+.....
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 170 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence 111111 1111 122223334456777665554 4456789999999999999999977666
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+. .++..+.+.|.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 171 l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 171 IF-EAIRELRDEGVT-ILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred HH-HHHHHHHHCCCE-EEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 64 566666667777 99999998864 78999999999988654
No 85
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.2e-18 Score=183.97 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=109.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc--cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY--AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~--~~ 494 (843)
++.++.+++|+ .+|++++|+||||+||||||++|+++... ..| .++|.... ..
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 35689999999 88999999999999999999999765321 111 11221000 00
Q ss_pred cchHH----------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 495 VPWFD----------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
..+.+ .++..+|....+....+.+|+++++. ..+.+++.+|+++||||||+|+|+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 92 LTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 01111 12333444444455566788766555 44456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+.|.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 172 ~~~l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 172 RHEVL-KVMQDLAEEGMT-MVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred HHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 77665 566667666787 99999998877 68999999999998754
No 86
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.78 E-value=1.4e-18 Score=181.41 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=110.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-----------------ccccccc--cccchHH-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD- 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-----------------~vpa~~~--~~i~~~~- 499 (843)
++.++.+++|+ ..|++++|+||||+||||||++|+++... ..|. ++|.... ......+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-TSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 45689999999 88999999999999999999999765321 1121 2221100 0011111
Q ss_pred ----------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 500 ----------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 500 ----------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
.++..++...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~ 169 (223)
T TIGR03740 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRS 169 (223)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH-HHHHH
Confidence 22334455555555667788766554 5556678999999999999999997777664 56666
Q ss_pred HHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 563 FAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 563 L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.+.|.+ ||++||+.++. .+|+++..+.+|.+....
T Consensus 170 ~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 170 FPEQGIT-VILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HHHCCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 6666787 99999998876 689999999999986543
No 87
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.9e-19 Score=178.17 Aligned_cols=145 Identities=21% Similarity=0.278 Sum_probs=99.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc-cc--------cccccchHHH---HHhhcCch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SS--------EYAKVPWFDS---VFADIGDE 508 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp-a~--------~~~~i~~~~~---i~~~ig~~ 508 (843)
..++++++|+ ..|++++|+||||||||||||+|+++... ..|.... .. ....+.+..+ ++......
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 4689999999 88999999999999999999999775432 2232111 00 0011222111 12222223
Q ss_pred hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhcc
Q 003163 509 QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYS 586 (843)
Q Consensus 509 q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~ 586 (843)
+++. +|+++++ +..+.+++.+|+++||||||+|+|+.....+. .++..+.+.|.+ +|++||+.++.. ++++
T Consensus 92 ~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~~g~t-iii~th~~~~~~~~~d~ 164 (173)
T cd03230 92 ENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKT-ILLSSHILEEAERLCDR 164 (173)
T ss_pred HHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHCCCE-EEEECCCHHHHHHhCCE
Confidence 3322 7766554 55556779999999999999999997777765 566666666776 999999988764 8888
Q ss_pred ccceeeeE
Q 003163 587 NDFFENAC 594 (843)
Q Consensus 587 ~~~v~ng~ 594 (843)
+..+.+|.
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 88877764
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.2e-18 Score=188.45 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=109.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---cccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i~ 496 (843)
..++.+++|+ .+|++++|+||||||||||+|+|+++.... .| .+++.... ....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 4589999999 899999999999999999999997653211 11 11221100 0001
Q ss_pred hHH---------------------HHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.+ .++..+|..+.......++|+++++ +..+.+++.+|++|||||||+|||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 111 1233344444455566778876654 555567799999999999999999976666
Q ss_pred HHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+. .++..+.+ .|.| ||++||+.+...+|+++..+.+|.+..+.
T Consensus 179 l~-~~l~~l~~~~g~t-ilivtH~~~~~~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 179 LI-KTIKGIRDDYQMT-VISITHDLDEVALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 64 56666665 4887 99999998887889999999999987654
No 89
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.78 E-value=8.4e-19 Score=181.49 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=103.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc--cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY--AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~--~~ 494 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 35688999999 88999999999999999999999765321 111 12221100 00
Q ss_pred cchHHH----------------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 495 VPWFDS----------------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
..+.++ ++..++....+.....++|+++++.. .+.+++.+|+++||||||+|+|+..
T Consensus 91 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 111111 22333444444555567887766554 4456789999999999999999966
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 594 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~ 594 (843)
...+ ..++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.
T Consensus 171 ~~~l-~~~l~~~~~~~~t-vi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 171 VGEV-LDVMKDLAEEGMT-MVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6666 4666677666777 99999998776 6899888887764
No 90
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=1.2e-18 Score=181.26 Aligned_cols=153 Identities=22% Similarity=0.218 Sum_probs=107.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~~ 498 (843)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... ....+.
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT-SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 5689999999 899999999999999999999997653211 11 11221000 000111
Q ss_pred ---------------------HHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
..++..++..+.......++|+++++. ..+.+++.+|+++||||||+|+|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 112333444444455566788766554 4555779999999999999999997766664
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+ +.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 174 -~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 174 -DLILEVRK-GRS-IILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred -HHHHHHhc-CCE-EEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 56666665 566 99999999877 58999999999998754
No 91
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=184.68 Aligned_cols=155 Identities=14% Similarity=0.175 Sum_probs=108.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ...
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC-cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 45789999999 899999999999999999999997653211 11 01221100 001
Q ss_pred chHH------------------------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEE
Q 003163 496 PWFD------------------------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLV 538 (843)
Q Consensus 496 ~~~~------------------------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LL 538 (843)
.+.+ .++..+|...........+|+++++. ..+.+++.+|++|
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 96 TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111 11223444444455556788766555 4455678999999
Q ss_pred EEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 539 LLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 539 LLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||||||+|||+.....+ ..++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+.+.
T Consensus 176 llDEPt~~LD~~~~~~l-~~~L~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 176 MLDEPAAGLNPKETKEL-DELIAELRNEHNVT-VLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred EEcCCccCCCHHHHHHH-HHHHHHHHhhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999777766 4566666664 777 99999998876 68999999999988654
No 92
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=187.79 Aligned_cols=155 Identities=18% Similarity=0.176 Sum_probs=109.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc---ccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY---AKV 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~---~~i 495 (843)
..++.+++|+ ..|++++|+||||+||||||++|+++... ..| .++|.... ...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 4589999999 89999999999999999999999765321 111 11221100 001
Q ss_pred chHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+.++ ++..++...........+|+++++...+ .+++.+|+++||||||+|||+....
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111 1223344444445556778777665554 5678999999999999999996666
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+ ..++..+.+.|.| ||++||+.+....|+++..+.+|.+..++
T Consensus 174 ~l-~~~l~~l~~~g~t-il~~tH~~~~~~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 174 AV-LERIKKLHEKGKT-IVYITHNLEELHDADRIIVMDRGKIVLEG 217 (274)
T ss_pred HH-HHHHHHHHhCCCE-EEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence 65 4666667777887 99999999888889999999999987653
No 93
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=188.10 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=110.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccc---ccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSE---YAKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~---~~~i~ 496 (843)
+.++.+++|+ ..|++++|+||||+||||||++|+++.... .| .+++... .....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 4689999999 899999999999999999999997653211 11 1122100 00001
Q ss_pred hH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+. ..++..+|....+......+|+++++... +.+++.+|+||||||||+|||+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11 11233344445555566678877765554 456789999999999999999977776
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+. .++..+.+. |.| ||++||+++....|+++..+.+|.+.++.
T Consensus 179 l~-~~l~~l~~~~~~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 179 VL-ETVRQLKEQKGIT-VLSITHDLDEAAQADRVIVMNKGEILEEG 222 (279)
T ss_pred HH-HHHHHHHHcCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 64 566666654 777 99999999888789999999999987654
No 94
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=9.2e-19 Score=180.30 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=109.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhcccccccc-cc--------c--ccccchHH---HHHhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHIL-SS--------E--YAKVPWFD---SVFAD 504 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~~vp-a~--------~--~~~i~~~~---~i~~~ 504 (843)
++.++.+++|+ ..|++++|+||||+||||||++|++.. +.+..|...- .. . ...+.+.. ..+..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 35689999999 899999999999999999999998763 2233342111 00 0 00122211 12223
Q ss_pred cCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-
Q 003163 505 IGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT- 582 (843)
Q Consensus 505 ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~- 582 (843)
+...+.+......+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++..+.+.+.| +|++||+.+...
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~t-iii~sh~~~~~~~ 169 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKS-VLIITHYQRLLDY 169 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHH
Confidence 333444433335788776554 4455678999999999999999997777664 566667666777 999999998886
Q ss_pred -hhccccceeeeEEEEec
Q 003163 583 -LKYSNDFFENACMEFDE 599 (843)
Q Consensus 583 -~a~~~~~v~ng~v~fd~ 599 (843)
+++++..+.+|.+..+.
T Consensus 170 ~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred hhCCEEEEEECCEEEEEc
Confidence 79999999999987653
No 95
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=194.56 Aligned_cols=156 Identities=16% Similarity=0.135 Sum_probs=110.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccc--ccccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSE--YAKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~--~~~i~~~ 498 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .|. +++... ...+.+.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT-SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 45689999999 889999999999999999999997764321 111 111100 0001111
Q ss_pred H---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 D---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+ .++..++..+.......++|+++++. ..+.+++.+|++||||||++|||+.....+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 22344455555556667788776554 5556779999999999999999997777776
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 557 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 557 ~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.. +..+.+ .|.| +|+||||.+.+ .+|+++..+.+|.+....
T Consensus 175 ~~-l~~l~~~~g~t-ii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 175 LE-IQRLHRRLKTT-SLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred HH-HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 54 455554 4887 99999998655 799999999999997553
No 96
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=1.3e-18 Score=193.48 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=110.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++.-.. .| .++|.... ..
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~-~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 4689999999 899999999999999999999997653211 11 11221000 00
Q ss_pred cchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+++ .++..+|..+......+.+|+++++...+ .+++.+|++|||||||+||||...
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~ 176 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 01111 22344555555566677888877655544 567899999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+. .++..+.+. |.| ||++||+++.. .+|+++..+.+|.+...
T Consensus 177 ~~i~-~lL~~l~~~~g~t-iiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 177 QSIL-ELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 7764 666667654 887 99999999887 68999999999998744
No 97
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=5.7e-19 Score=179.10 Aligned_cols=147 Identities=15% Similarity=0.081 Sum_probs=100.4
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc-cccc----------ccccchHHH------HHhhc
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE----------YAKVPWFDS------VFADI 505 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v-pa~~----------~~~i~~~~~------i~~~i 505 (843)
++++++++ ..|++++|+||||+||||||++|+++... ..|... .... ...+.+..+ ++..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 78899999 88999999999999999999999776432 223211 1000 011222211 22233
Q ss_pred CchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hh
Q 003163 506 GDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TL 583 (843)
Q Consensus 506 g~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~ 583 (843)
...+++.... .+|+++++. ..+.+++.+|+++|||||++|+|+.....+. .++..+.+.+.+ +|++||+.+.. .+
T Consensus 94 t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~ 170 (182)
T cd03215 94 SVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELADAGKA-VLLISSELDELLGL 170 (182)
T ss_pred cHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHh
Confidence 4444443321 177766555 4556678999999999999999997777665 566666666777 99999997655 68
Q ss_pred hccccceeeeE
Q 003163 584 KYSNDFFENAC 594 (843)
Q Consensus 584 a~~~~~v~ng~ 594 (843)
|+++..+.+|.
T Consensus 171 ~d~v~~l~~G~ 181 (182)
T cd03215 171 CDRILVMYEGR 181 (182)
T ss_pred CCEEEEecCCc
Confidence 99888887765
No 98
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5.2e-19 Score=178.79 Aligned_cols=149 Identities=15% Similarity=0.235 Sum_probs=98.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc-cccc-----------ccccchHHHHHhhcCc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE-----------YAKVPWFDSVFADIGD 507 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v-pa~~-----------~~~i~~~~~i~~~ig~ 507 (843)
++.++.+++|+ ..|++++|+||||+|||||+|+|+++... ..|... .... ...+.+..+-. .+-.
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~-~~~~ 89 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDF-ALFP 89 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCC-ccCC
Confidence 35689999999 88999999999999999999999765332 223211 1100 01111111100 0001
Q ss_pred hhhHhhhhhh-hhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHh-h
Q 003163 508 EQSLSQSLST-FSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-L 583 (843)
Q Consensus 508 ~q~i~~~lst-fS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~-~ 583 (843)
..++..++.. +|++++ ++..+.+++.+|+++||||||+|+|+.....+ ..++..+.+. +.+ +|++||+.++.. +
T Consensus 90 ~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~t-iii~sH~~~~~~~~ 167 (178)
T cd03229 90 HLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGIT-VVLVTHDLDEAARL 167 (178)
T ss_pred CCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCE-EEEEeCCHHHHHHh
Confidence 1123333322 776655 45555677899999999999999999666666 4566666665 676 999999988775 7
Q ss_pred hccccceeee
Q 003163 584 KYSNDFFENA 593 (843)
Q Consensus 584 a~~~~~v~ng 593 (843)
++++..+.+|
T Consensus 168 ~d~i~~l~~g 177 (178)
T cd03229 168 ADRVVVLRDG 177 (178)
T ss_pred cCEEEEEeCC
Confidence 8887777665
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.3e-18 Score=187.32 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc---c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~---~ 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 35689999999 889999999999999999999997653211 11 12222100 0
Q ss_pred ccchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
...+.++ .+..++.........+.+|+++++.. .+.+++.+|++|||||||+|||+..
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~ 171 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171 (271)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0001111 11222333333344566787766554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 172 ~~~l~-~~l~~~~~~g~t-ii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 172 RTQMI-AIIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77664 566666666787 99999998876 689999999999987653
No 100
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.78 E-value=1.4e-18 Score=184.48 Aligned_cols=155 Identities=16% Similarity=0.197 Sum_probs=107.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------------cccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILSS 490 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------------~~vpa~ 490 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 35689999999 88999999999999999999999765321 111 112210
Q ss_pred ccc--ccchHHH----------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 491 EYA--KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 491 ~~~--~i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
... .....++ ++..+|.........+++|+++++. ..+.+++.+|++|||||||+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~ 173 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 000 0111111 1222333333444556788766555 45556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||+.....+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 174 ~LD~~~~~~l~-~~l~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 174 ALDPELVGEVL-NTIRQLAQEKRT-MVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred cCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99997666664 566667767887 99999998776 68999999999998754
No 101
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.78 E-value=1.8e-18 Score=186.15 Aligned_cols=155 Identities=17% Similarity=0.252 Sum_probs=106.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~ 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 45689999999 899999999999999999999997653211 11 12221100 0
Q ss_pred ccchHHHH----------------------HhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 494 KVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 494 ~i~~~~~i----------------------~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
...+.+++ +..++.........+.+|+++++...+ .+++.+|++|||||||+|||+.
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 177 (269)
T PRK11831 98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI 177 (269)
T ss_pred CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 01111111 222333333444556788777665554 5678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+. |.+ ||++||+.+.. .+|+++..+.+|.+.++
T Consensus 178 ~~~~l~-~~l~~~~~~~g~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 178 TMGVLV-KLISELNSALGVT-CVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHH-HHHHHHHHhcCcE-EEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 777665 555566554 777 99999997665 68999999999998755
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=99.78 E-value=1.5e-18 Score=181.16 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=105.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------------------------ccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEY--A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------------------------~vpa~~~--~ 493 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... ..|. ++|.... .
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 35689999999 89999999999999999999999765321 1111 1221000 0
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
...+.+ .++..++....+....+.+|+++++.. .+.+++.+|+++||||||+|||+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 001111 122333444444455567887766554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
...+. .++..+.+.+.+ +|++||+.++. .+|+++..+.+|.+.
T Consensus 173 ~~~l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 173 SEGIL-RLFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 77665 566666666776 99999998876 578888888888763
No 103
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.8e-18 Score=182.76 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=107.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++++++|+ ..|++++|+||||+||||||++|+++.... .| .++|.... ...
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD-AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 45789999999 899999999999999999999997653211 11 12221100 001
Q ss_pred chHHH----------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 496 PWFDS----------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 496 ~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
.+.++ ++..++...........+|+++++. ..+.+++.+|++|||||||+|+|+...
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11111 1222333333344456678776655 445577899999999999999999766
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~e-l~~~a~~~~~v~ng~v~fd 598 (843)
..+ ..++..+.+.|.+ +|++||+.+ +..+|+++..+.+|.+.+.
T Consensus 174 ~~l-~~~l~~~~~~g~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 174 IDI-KRIIEHLRDSGLG-VLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHH-HHHHHHHHhcCCE-EEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 666 4566777777887 999999985 5579999999999998754
No 104
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=188.63 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=109.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------ccccccc---c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSE---Y 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~---~ 492 (843)
+.++.+++|+ ..|++++|+||||+|||||||+|+++.... .| .++|... .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 4689999999 899999999999999999999997653211 11 1222210 0
Q ss_pred cccchHHH---------------------HHhhcCch-hhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 493 AKVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 493 ~~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
....+.++ ++..++.. .......+.+|+++++... +.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~ 178 (287)
T PRK13641 99 FENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDP 178 (287)
T ss_pred ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence 00111111 12233443 2334555678877766554 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+ ..++..+.+.|.| ||++||+++.. .+|+++..+.+|.+..+.
T Consensus 179 ~~~~~l-~~~l~~l~~~g~t-vlivsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 179 EGRKEM-MQLFKDYQKAGHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHH-HHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 776666 4666777767887 99999998876 699999999999987653
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=1.5e-18 Score=194.09 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=111.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------------------cccccccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEYAK 494 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------------------~G~~vpa~~~~~ 494 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... ...+++. ...-
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q-~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ-QFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC-CCcC
Confidence 356789999999 9999999999999999999999976532110 0112221 0000
Q ss_pred ---cchH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 495 ---VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 495 ---i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
..+. ..++..+|....+......+|+++++... +.+++.+|++|||||||+||||
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~ 162 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1111 12234455555566677788987766554 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+...+. .+. +.|.| ||++|||.+.+ .+|+++..+.+|.+...
T Consensus 163 ~~r~~l~~~l~-~l~~~~~~T-ii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 163 LIRDSMQDELK-KLQATLQKT-IVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred HHHHHHHHHHH-HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 88888765444 555 44787 99999998765 78999999999998643
No 106
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=1e-18 Score=179.23 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=106.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh--hhcccccccc-cc------cccccchHH---HHHhhcCch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--MMAKSGLHIL-SS------EYAKVPWFD---SVFADIGDE 508 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~--~~~q~G~~vp-a~------~~~~i~~~~---~i~~~ig~~ 508 (843)
+.++++++|+ ..|++++|+||||+|||||||+|+++. .. ..|...- .. ....+.+.. .++..+...
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 5689999999 889999999999999999999998765 32 2232111 00 001122211 122233444
Q ss_pred hhHhhhh--hhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhh
Q 003163 509 QSLSQSL--STFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTL 583 (843)
Q Consensus 509 q~i~~~l--stfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~e--l~~~ 583 (843)
+++.... ..+|+++++. ..+.+++.+|+++|||||++|||+.....+. .++..+.+.|.| +|++||+.+ ...+
T Consensus 101 ~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~~ 178 (194)
T cd03213 101 ETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRT-IICSIHQPSSEIFEL 178 (194)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCchHHHHHh
Confidence 4443322 2677766554 5555678999999999999999997776664 566667766887 999999975 4578
Q ss_pred hccccceeeeEEEE
Q 003163 584 KYSNDFFENACMEF 597 (843)
Q Consensus 584 a~~~~~v~ng~v~f 597 (843)
++++..+.+|++..
T Consensus 179 ~d~v~~l~~G~i~~ 192 (194)
T cd03213 179 FDKLLLLSQGRVIY 192 (194)
T ss_pred cCEEEEEeCCEEEe
Confidence 99999999998754
No 107
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=188.68 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=109.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc----------------------cccccccccc---ccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY---AKV 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q----------------------~G~~vpa~~~---~~i 495 (843)
+.++++++|+ ..|++++|+|||||||||||++|+++..... ...++|.... ...
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 4689999999 8999999999999999999999976532110 0012332110 001
Q ss_pred chHH---------------------HHHhhcCch--hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 496 PWFD---------------------SVFADIGDE--QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 496 ~~~~---------------------~i~~~ig~~--q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+.+ .++..+|.. .......+.+|+++++...+ .+++.+|++|||||||+|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 1111 123334443 23445567788877665554 56789999999999999999977
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 180 ~~~l~-~~l~~l~~~~g~t-vi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 180 RDEIL-NKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 77664 566666654 787 99999998876 689999999999997654
No 108
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.7e-18 Score=182.46 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ...
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 45689999999 899999999999999999999997653211 11 11221000 001
Q ss_pred chHHHH-------------------Hhhc-CchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 496 PWFDSV-------------------FADI-GDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 496 ~~~~~i-------------------~~~i-g~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
.+.+++ +..+ +..+.......++|+++++. ..+.+++.+|+++||||||+|+|+.....
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~ 175 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence 111211 1111 12222233445677766554 44556789999999999999999966666
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~e-l~~~a~~~~~v~ng~v~fd 598 (843)
+ ..++..+.+.|.| ||++||+.+ +..+|+++..+.+|.+...
T Consensus 176 l-~~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 176 I-FDTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred H-HHHHHHHHHCCCE-EEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 5 4566667777887 999999986 4579999999999988754
No 109
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=1.6e-18 Score=185.37 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=107.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~--~i~ 496 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... ..| .++|..... ...
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 45689999999 89999999999999999999999765321 111 122211000 011
Q ss_pred hHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhC------CCCcEEEEecCCCCCC
Q 003163 497 WFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIGNII-SQS------TSQSLVLLDEIGAGTN 548 (843)
Q Consensus 497 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a------~~p~LLLLDEP~sGlD 548 (843)
+.++ ++..++...........+|+++++...++ +++ .+|+++||||||+|||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD 172 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCC
Confidence 1111 22233443334445566787776665555 455 4899999999999999
Q ss_pred hhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+.....+. .++..+. +.|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 173 ~~~~~~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 173 LAHQHHVL-RLARQLAHERGLA-VIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHH-HHHHHHHHhcCCE-EEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 97777665 5555565 66787 99999998876 59999999999998754
No 110
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.6e-18 Score=179.50 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=104.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
+..++++++|+ ..| +++|+|||||||||||++|+++... ..| .++|.... ....+
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 34689999999 668 9999999999999999999765321 111 12222100 00111
Q ss_pred HH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+ .++..++...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 12233344444445556778766554 455577999999999999999999666666
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
..++..+.+ +.| +|++||+.++. .+++++..+.+|.+..
T Consensus 170 -~~~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 170 -RNLLSELGE-DRI-VILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred -HHHHHHHhC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 466677765 466 99999998876 5899999999988754
No 111
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.77 E-value=6.4e-19 Score=176.43 Aligned_cols=145 Identities=18% Similarity=0.118 Sum_probs=98.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHH--HhhcCchhhHhh-hhhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ-SLST 517 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i--~~~ig~~q~i~~-~lst 517 (843)
+.++.+++|+ .+|++++|+||||||||||+++|+++... ..|..... ....+.++.+- +......+++.. ....
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~-~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~ 91 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMP-EGEDLLFLPQRPYLPLGTLREQLIYPWDDV 91 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEEC-CCceEEEECCCCccccccHHHHhhccCCCC
Confidence 4688999999 88999999999999999999999765432 23322111 11122222111 112234444443 4567
Q ss_pred hhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeee
Q 003163 518 FSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 593 (843)
Q Consensus 518 fS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng 593 (843)
+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++..+ +.+ +|++||+.++..+++++..+.++
T Consensus 92 LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~---~~t-iiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY-QLLKEL---GIT-VISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHH-HHHHHh---CCE-EEEEeCChhHHhhCCEEEEEcCC
Confidence 88766554 4555678999999999999999997766654 344433 576 99999998887788877666553
No 112
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=194.65 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=109.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~---~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .|. +++. ... .+.+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~i~~v~Q-~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT-SGDLFIGEKRMNDVPPAERGVGMVFQ-SYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHhHCCEEEEeC-CcccCCCCCH
Confidence 45689999999 889999999999999999999997654221 111 1221 100 0111
Q ss_pred HH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+ .++..++..+.......++|+++++. ..+.+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 12333444444555667788776555 455567899999999999999999777777
Q ss_pred HHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
. .++..+.. .|.| +|++|||.+.. .+|+++..+.+|.+....
T Consensus 173 ~-~~L~~l~~~~g~t-vI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 173 R-IEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred H-HHHHHHHHHhCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 45555554 4787 99999998765 689999999999987543
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.2e-18 Score=190.95 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=109.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------------------------------------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------------------ 485 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------------------------------------ 485 (843)
.++++++|+ ..|++++|+||||||||||+++|+++..... |.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT-GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-cEEEEeceecccccccccccccccccccccccccccch
Confidence 589999999 8899999999999999999999976632211 11
Q ss_pred ---------ccccccc-c--ccchHH---------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HH
Q 003163 486 ---------HILSSEY-A--KVPWFD---------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-IS 530 (843)
Q Consensus 486 ---------~vpa~~~-~--~i~~~~---------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~ 530 (843)
+++.... . ...+.+ ..+..+|.. ........++|+++++...+ .+
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 2221100 0 001111 123334443 34455666788777655544 56
Q ss_pred hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 531 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 531 ~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
++.+|++|||||||+|||+.....+ ..++..+.+.|.| ||++|||++.. .+|+++..+.+|.+..+.
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~~g~t-iiivtHd~~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNKQGKT-IILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHCCCE-EEEEeeCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7899999999999999999666655 5667777777887 99999998765 799999999999988664
No 114
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.9e-18 Score=178.88 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=101.0
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc--ccchHHH----
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS---- 500 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~--~i~~~~~---- 500 (843)
+++|+ .+|++++|+||||||||||||+|+++... ..| .+++..... ...+.++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 77777 78899999999999999999999765321 111 122210000 0011111
Q ss_pred -----------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 501 -----------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 501 -----------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
++..++...........+|+++++...+ .+++.+|+++||||||+|+|+.....+. .++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~ 173 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLD 173 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHH
Confidence 2233344333444556788777655544 5668999999999999999997777765 55555
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 563 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 563 L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
+.. .|.+ ||++||+.+.. .+|+++..+.+|.+..
T Consensus 174 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMT-VLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCE-EEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 654 5787 99999998876 6899999999998754
No 115
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.77 E-value=1.6e-18 Score=182.33 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=102.9
Q ss_pred eeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------cccccccc--cccchHHH------
Q 003163 446 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFDS------ 500 (843)
Q Consensus 446 ~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------~~vpa~~~--~~i~~~~~------ 500 (843)
.+++|+ ..|++++|+||||||||||+|+|+++... ..| .++|.... ......++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 456777 78899999999999999999999765421 111 12221100 00111111
Q ss_pred -----------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 501 -----------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 501 -----------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
++..++.........+.+|+++++.. .+.+++.+|+++||||||+|||+.....+. .++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~-~~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ-EELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-HHHHH
Confidence 22333444444455667887766554 445678999999999999999997777765 45555
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 563 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 563 L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+....
T Consensus 160 ~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 160 IWEEHRVT-VLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHhcCCE-EEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 554 4777 99999998765 689999999999987543
No 116
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=185.43 Aligned_cols=156 Identities=18% Similarity=0.161 Sum_probs=111.0
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc------------ccccccccchHH---HHHh
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------LSSEYAKVPWFD---SVFA 503 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v------------pa~~~~~i~~~~---~i~~ 503 (843)
+...+.++|+++ +.|++++++||||||||||||+|+++..... |... +. ....++++- .+|.
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~-~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAV-RDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccch-hhcceeEEEechhhcc
Confidence 345677789999 8999999999999999999999987754433 2111 11 112233221 1344
Q ss_pred hcCchhhHhhhh---------------------------------hhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 504 DIGDEQSLSQSL---------------------------------STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 504 ~ig~~q~i~~~l---------------------------------stfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
++++.+|+..++ ..+||++ ++++.+.+++-+|++||||||+++||.
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 555555554433 3345554 555666677899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.-...+-..+.+...+.|++ +++||||.+.+ ++|+++..+++|.++..
T Consensus 171 ~vr~~lr~wLr~~~~~~~~t-tvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 171 KVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHHHHHHhhCce-EEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 88777765555544445887 99999998777 79999999999998754
No 117
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1.5e-18 Score=181.60 Aligned_cols=156 Identities=17% Similarity=0.082 Sum_probs=111.7
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc----cccccccccc----ccc------------------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----SGLHILSSEY----AKV------------------ 495 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q----~G~~vpa~~~----~~i------------------ 495 (843)
.+..|++|+ +.|.+++++||||+||||+||++.++..... .+.+.|-... ..+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 367899999 9999999999999999999999976544322 1112232100 000
Q ss_pred --chHH---------------HHHhhcCchhhHhhhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 496 --PWFD---------------SVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 496 --~~~~---------------~i~~~ig~~q~i~~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
.+.. .+..-++.+..+.....++|-+ .++...+++++.+|.+|+|||||-|||.....++-.
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 0000 0112233444455566677754 445555667799999999999999999988888876
Q ss_pred HHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEec
Q 003163 558 SLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~-el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+-++-.++++| |++|||++ ++..+|+++..+.+|.+.||+
T Consensus 198 Flke~n~~~~aT-VllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 198 FLKEYNEERQAT-VLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHHhhCce-EEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 666666677887 99999985 677899999999999999985
No 118
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.77 E-value=2.3e-18 Score=180.18 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=106.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh----hccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----MAKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~----~~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.. .+..|. ++|....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 35689999999 8999999999999999999999987651 112221 1111000
Q ss_pred c-ccchHHH----------------------HHhhcCchhhHhhh--hhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 493 A-KVPWFDS----------------------VFADIGDEQSLSQS--LSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 493 ~-~i~~~~~----------------------i~~~ig~~q~i~~~--lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
. ...+.++ ++..+|....+... ...+|+++++...+ .+++.+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 0011111 12233333333334 36788777655554 567899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||+.....+. .++..+.+. .+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 LD~~~~~~l~-~~l~~~~~~-~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 172 LDPISTAKIE-ELIAELKKE-YT-IVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCHHHHHHHH-HHHHHHhhC-cE-EEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9997776664 566666665 66 99999998875 68999999999998654
No 119
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=1.7e-18 Score=178.29 Aligned_cols=144 Identities=20% Similarity=0.252 Sum_probs=97.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------------ccccccc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY-- 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------------~vpa~~~-- 492 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... ..|. +++....
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 35689999999 88999999999999999999999765321 1121 1111000
Q ss_pred cccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 493 AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 493 ~~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
....+.+ .++..++...........+|+++++ +..+.+++.+|+++||||||+|+|+.
T Consensus 89 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 0001111 1223334444444455667776655 45555678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
....+. .++..+.+.|.+ +|++||+.++..+|+++
T Consensus 169 ~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~d~i 203 (206)
T TIGR03608 169 NRDEVL-DLLLELNDEGKT-IIIVTHDPEVAKQADRV 203 (206)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHhhcCEE
Confidence 777664 566666666777 99999999877776654
No 120
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=2.1e-18 Score=182.20 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=106.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------ccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~--~~i 495 (843)
++.++.+++|+ .+|++++|+||||+|||||||+|++.... ..|. ++|.... ...
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 35689999999 89999999999999999999999765321 1110 1111000 000
Q ss_pred chHH-----------------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 496 PWFD-----------------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 496 ~~~~-----------------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
.+.+ .++..++.........+++|+++++. ..+.+++.+|+++||||||+
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~ 172 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1111 12223344444444556778766554 45556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||+.....+. .++..+.+ +.+ ||++||+.++. .+|+++..+.+|++..+
T Consensus 173 ~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 173 GMTDEETEKTA-ELLKSLAG-KHS-VVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCHHHHHHHH-HHHHHHhc-CCE-EEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 99997776664 56666665 566 99999998876 68999999999998754
No 121
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.77 E-value=2.9e-18 Score=183.56 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=107.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--ccc--------------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG--------------------------LHILSSE 491 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--q~G--------------------------~~vpa~~ 491 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++.... ..| .++|...
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 45689999999 889999999999999999999998764321 111 1122100
Q ss_pred c--cccchHHH-----------------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEE
Q 003163 492 Y--AKVPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVL 539 (843)
Q Consensus 492 ~--~~i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLL 539 (843)
. ....+.++ ++..++....+......+|+++++. ..+.+++.+|+|||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 00011111 1222344444445556678766555 44456789999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 598 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~fd 598 (843)
|||||+|||+.....+. .++..+.+ .|.+ ||++||+.++ ..+|+++..+.+|.+..+
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~~~~~~g~t-vii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 176 ADEPIASLDPESARIVM-DTLRDINQNDGIT-VVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred ecCccccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999997777665 56666664 4776 9999999986 578999999999988654
No 122
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.5e-18 Score=178.43 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=100.6
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------------cccccccc--ccchH
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYA--KVPWF 498 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------------~vpa~~~~--~i~~~ 498 (843)
+++|+ .. ++++|+||||+||||||++|+++... ..|. ++|..... ...+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 77888 67 99999999999999999999765321 1111 11210000 01111
Q ss_pred H-------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHH
Q 003163 499 D-------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 558 (843)
Q Consensus 499 ~-------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ 558 (843)
+ .++..++...........+|+++++. ..+.+++.+|+++||||||+|||+.....+. .
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~ 172 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL-P 172 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-H
Confidence 1 12233444444455566788776655 4455678999999999999999997777665 5
Q ss_pred HHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 559 LLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 559 lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
++..+.+. |.+ +|++||+.+.. .+++++..+.+|.+..
T Consensus 173 ~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 173 ELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHcCcE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 56566554 777 99999998766 6899999999998754
No 123
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3e-18 Score=181.24 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=108.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------------cccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------------LHILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------------~~vpa~~~ 492 (843)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|....
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 35689999999 89999999999999999999999765321 111 11221000
Q ss_pred --cccchHHHH----------------------HhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCC
Q 003163 493 --AKVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 493 --~~i~~~~~i----------------------~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGl 547 (843)
....+.+++ +..+|....+......+|+++++. ..+.+++.+|+++||||||+|+
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~L 172 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 001111111 222333334444556677766554 4555678899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+.....+ ..++..+.+.|.| +|++||+.+.. .+++++..+.+|.+..+.
T Consensus 173 D~~~~~~l-~~~l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 173 DPEITAQI-VSIIRELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred CHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99666666 4566777767887 99999998876 689999999999987653
No 124
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.1e-18 Score=187.47 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=108.0
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc-c--
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A-- 493 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~-~-- 493 (843)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT-EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 589999999 899999999999999999999997653221 11 11221100 0
Q ss_pred ccchHHH---------------------HHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChh
Q 003163 494 KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 494 ~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
...+.++ ++..++.. .........+|+++++. ..+.+++.+|++|||||||+|||+.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 0011111 12223332 22344455677766555 4445678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
....+. .++..+.+.|.| ||++|||+++. .+|+++..+.+|.+.++.
T Consensus 179 ~~~~l~-~~l~~l~~~g~t-il~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 179 ARIEMM-QLFESIHQSGQT-VVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 666664 667777777887 99999999876 689999999999998764
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=2.8e-18 Score=179.96 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=104.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 45689999999 889999999999999999999997653211 11 12222100 000
Q ss_pred chHHHH------------------HhhcC-chhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 496 PWFDSV------------------FADIG-DEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 496 ~~~~~i------------------~~~ig-~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.+.+++ ...++ ...........+|+++++. ..+.+++.+|+++||||||+|||+.....+
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l 170 (230)
T TIGR03410 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI 170 (230)
T ss_pred cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 111111 11111 1122334445677766555 445567899999999999999999777766
Q ss_pred HHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003163 556 GMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 598 (843)
Q Consensus 556 ~~~lle~L~~-~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd 598 (843)
. .++..+.+ .+.| +|++||+.+... +++++..+.+|.+...
T Consensus 171 ~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 171 G-RVIRRLRAEGGMA-ILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred H-HHHHHHHHcCCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5 55556665 4777 999999988774 8999999999988654
No 126
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.77 E-value=7.8e-19 Score=193.52 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------cccccccccccccchHHH---HHhhcCc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------SGLHILSSEYAKVPWFDS---VFADIGD 507 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------~G~~vpa~~~~~i~~~~~---i~~~ig~ 507 (843)
++..+..|++|+ ..|++++|+||+||||||+||+|+++.-... .-..+|+ +...++++-+ +|.++++
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hhcccceeecCcccCCCCcH
Confidence 467899999999 8999999999999999999999987754322 1112333 1122221111 2333333
Q ss_pred hhh--------------------------------HhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 508 EQS--------------------------------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 508 ~q~--------------------------------i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
.+| .....+.+||++ +|++.+.+++.+|.+||||||.++||..-+..
T Consensus 95 ~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~ 174 (352)
T COG3842 95 EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 (352)
T ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHH
Confidence 333 334445566654 55666677899999999999999999988888
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
+-..+.+...+.|.| +|++|||.+.+ .+++++..|.+|+++-
T Consensus 175 mr~Elk~lq~~~giT-~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 175 MRKELKELQRELGIT-FVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred HHHHHHHHHHhcCCe-EEEEECCHHHHhhhccceEEccCCceee
Confidence 877777766677987 99999998766 7999999999999874
No 127
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.6e-18 Score=186.94 Aligned_cols=155 Identities=15% Similarity=0.119 Sum_probs=108.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc-c-
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~-~- 493 (843)
..++++++|+ ..|++++|+||||||||||+|+|+++..... | .+++.... .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS-GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-cEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 4689999999 9999999999999999999999976532211 1 12222100 0
Q ss_pred -ccchHH---------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 494 -KVPWFD---------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 -~i~~~~---------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
...+.+ .++..++.. .........+|+++++... +.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~ 178 (290)
T PRK13634 99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178 (290)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 001111 122234443 2234456678877665544 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 179 ~~~~~l~-~~L~~l~~~~g~t-viiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 179 KGRKEMM-EMFYKLHKEKGLT-TVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7777664 56666655 4887 99999998876 689999999999998764
No 128
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.77 E-value=1.3e-18 Score=175.73 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=101.6
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccc---------ccccchHHHH--HhhcCchhh
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------YAKVPWFDSV--FADIGDEQS 510 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~---------~~~i~~~~~i--~~~ig~~q~ 510 (843)
.++.+++|+ ..|++++|+||||+|||||||+|+++... ..|...-... ...+.+..+. +......++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 94 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN 94 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHh
Confidence 589999999 89999999999999999999999765432 2232111000 0011111110 001122233
Q ss_pred HhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003163 511 LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 511 i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
+ ...+|+++++ +..+.+++.+|+++||||||+|||+.....+. .++..+. .+.+ +|++||+.++...+++...
T Consensus 95 i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~-~~~t-ii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 95 L---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL-KDKT-LIWITHHLTGIEHMDKILF 168 (178)
T ss_pred h---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc-CCCE-EEEEecCHHHHHhCCEEEE
Confidence 3 5567766655 45555679999999999999999997766664 5555564 4776 9999999988888888888
Q ss_pred eeeeEEEE
Q 003163 590 FENACMEF 597 (843)
Q Consensus 590 v~ng~v~f 597 (843)
+.+|.+..
T Consensus 169 l~~g~i~~ 176 (178)
T cd03247 169 LENGKIIM 176 (178)
T ss_pred EECCEEEe
Confidence 88888764
No 129
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.77 E-value=2.8e-18 Score=191.53 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=110.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~---~i~~ 497 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .| .+++. ... .+.+
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~~~r~ig~v~Q-~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDYGIVFQ-SYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCcH
Confidence 45688999999 889999999999999999999998764221 11 01111 100 0111
Q ss_pred H---------------------HHHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 F---------------------DSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
. ..++..++...........+|+++++ ++.+.+++.+|+++|||||++|||+.....+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 12233444444555566778876655 4555677999999999999999999888877
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+.+...+.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 174 ~~~L~~l~~~~~~t-vi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 174 RTEIRQLQRRLGVT-TIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 65444433445887 99999998765 799999999999997543
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=4e-18 Score=181.43 Aligned_cols=155 Identities=14% Similarity=0.177 Sum_probs=106.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------------------c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------------L 485 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------------------~ 485 (843)
+..++.+++|+ ..|++++|+||||||||||||+|+++... ..| .
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 35689999999 89999999999999999999999765321 111 0
Q ss_pred ccccccc--cccchHHH----------------------HHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEE
Q 003163 486 HILSSEY--AKVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLL 540 (843)
Q Consensus 486 ~vpa~~~--~~i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLL 540 (843)
+++.... ....+.++ ++..+|....+......+|+++++ +..+.+++.+|+++||
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 170 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLF 170 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111000 00111111 122334434444455677876655 4555567899999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||||+|||+.....+. .++..+.+ .|.+ +|++||+.+.. .+++++..+.+|.+...
T Consensus 171 DEP~~~LD~~~~~~l~-~~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 171 DEVTSALDPELVGEVL-NVIRRLASEHDLT-MLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred eCCcccCCHHHHHHHH-HHHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999997776665 55555555 4777 99999998876 68999999999998654
No 131
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.77 E-value=2.9e-18 Score=181.06 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=105.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhccccc----------------------cccccccccc-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEYAKV- 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~----------------------~vpa~~~~~i- 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++. +.+..|. ++|. ....+
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q-~~~~~~ 90 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQ-YPEEIP 90 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeec-cccccC
Confidence 45689999999 899999999999999999999998763 1122221 1111 00000
Q ss_pred --chHH----------------------------HHHhhcCchh-hHhhhhh-hhhHHhHHH-HHHHHhCCCCcEEEEec
Q 003163 496 --PWFD----------------------------SVFADIGDEQ-SLSQSLS-TFSGHLKQI-GNIISQSTSQSLVLLDE 542 (843)
Q Consensus 496 --~~~~----------------------------~i~~~ig~~q-~i~~~ls-tfS~~~~~l-~~il~~a~~p~LLLLDE 542 (843)
...+ .++..++..+ ....... .+|+++++. ..+.+++.+|++|||||
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 170 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 0000 1111223321 1223343 388766555 45556789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEec
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 599 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~-a~~~~~v~ng~v~fd~ 599 (843)
||+|||+.....+. .++..+.+.|.| ||++||+.++.. + |+++..+.+|.+..+.
T Consensus 171 Pt~~LD~~~~~~l~-~~l~~~~~~~~t-vi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 171 IDSGLDIDALKIVA-EGINRLREPDRS-FLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHCCcE-EEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999997777665 566667767787 999999988875 5 7888899999987654
No 132
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.7e-18 Score=182.06 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~--~i~ 496 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|..... .+.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 45789999999 89999999999999999999999765321 111 122211000 011
Q ss_pred hHHH-------------------------HHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~~-------------------------i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
..+. .+..++...........+|+++++ +..+.+++.+|+++||||||+|+|+.
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111 122233333344455667876655 55556778999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+...|.+ +|++||+.+.. .+++++..+.+|.+...
T Consensus 173 ~~~~l~-~~l~~l~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 173 HQVELM-RLMRELNTQGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred HHHHHH-HHHHHHHHCCCE-EEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 776665 555666666787 99999998865 79999999999998654
No 133
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=2.9e-18 Score=191.94 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=110.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-ccc-------------------cccccccc---ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGL-------------------HILSSEYA---KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-~G~-------------------~vpa~~~~---~i~ 496 (843)
+..++++++|+ ..|++++|+|||||||||||++|+++..... .|. +++. ... .+.
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ-~~~l~p~~t 95 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ-NYALFPHLK 95 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC-CcccCCCCc
Confidence 45689999999 8899999999999999999999987643321 021 1111 000 011
Q ss_pred hHH---------------------HHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.+ .++..++..+.......++|+++++ ++.+.+++.+|++||||||++|||+.....
T Consensus 96 v~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~ 175 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175 (362)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHH
Confidence 111 1233344444455556677876655 455567789999999999999999977777
Q ss_pred HHHHHHHHHHhc--CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAES--GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~~--g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+. ..+..+.+. |.| +|++|||.+.+ .+++++..+.+|.+....
T Consensus 176 l~-~~l~~l~~~~~g~t-il~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 176 MR-EEIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HH-HHHHHHHHhCCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 75 455556654 677 99999998775 789999999999997653
No 134
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.76 E-value=3.3e-18 Score=178.80 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=103.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc-c---
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY-A--- 493 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~-~--- 493 (843)
.++++++|+ ..|++++|+|||||||||||++|+++... ..| .+++.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 689999999 89999999999999999999999765321 111 11221100 0
Q ss_pred ccchHHH-----------------------HHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCC
Q 003163 494 KVPWFDS-----------------------VFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 494 ~i~~~~~-----------------------i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlD 548 (843)
.....++ ++..++.. .........+|+++++. ..+.+++.+|+++||||||+|||
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 0111111 11223332 22334445677766555 44456789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHh-hhccccceeeeEEEE
Q 003163 549 PLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-LKYSNDFFENACMEF 597 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~-~a~~~~~v~ng~v~f 597 (843)
+.....+. .++..+.+. |.+ ||++||+.+... +|+++..+.+|.+..
T Consensus 178 ~~~~~~l~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQIL-DLLKKLQEELGLT-LLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 97777665 555555554 777 999999988775 899999999988753
No 135
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.2e-18 Score=180.17 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=106.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc--ccch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~--~i~~ 497 (843)
+.++.+++|+ ..|++++|+||||+||||||++|+++... ..| .++|..... ...+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 4689999999 89999999999999999999999765321 111 122211000 0111
Q ss_pred HH---------------------HHHhhcCchh--hHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 498 FD---------------------SVFADIGDEQ--SLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 498 ~~---------------------~i~~~ig~~q--~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+ .++..++... ........+|+++++.. .+.+++.+|+++||||||+|+|+....
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 11 1233344442 34555677887766554 445678999999999999999996666
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003163 554 ALGMSLLEAFAE-SGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 598 (843)
Q Consensus 554 al~~~lle~L~~-~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~fd 598 (843)
.+. .++..+.+ .|.+ ||++||+.+. ..+++++..+.+|.+..+
T Consensus 173 ~l~-~~L~~~~~~~g~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 173 QLQ-EEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 664 56666655 4777 9999999875 478999999999998654
No 136
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=2.6e-18 Score=191.91 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=109.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~---~i~~ 497 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .|. +++. ... .+.+
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~~~~r~i~~v~Q-~~~l~p~~tv 91 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARDRKVGFVFQ-HYALFRHMTV 91 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHCCEEEEec-CcccCCCCcH
Confidence 45689999999 899999999999999999999997653211 110 1111 000 0111
Q ss_pred HH-------------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 498 FD-------------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 498 ~~-------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+ .++..++..+........+|+++++.. .+.+++.+|+++|||||++|||+..
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 11 123334444445555667887766554 4556789999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+.. ++..+.+ .|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 172 r~~l~~-~L~~l~~~~g~t-ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 172 RKELRR-WLRQLHEELKFT-SVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 777754 5555554 4787 99999998765 789999999999997653
No 137
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.8e-18 Score=175.58 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=104.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-------------hhc---------------ccccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-------------MMA---------------KSGLHILSS 490 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-------------~~~---------------q~G~~vpa~ 490 (843)
+++.++.+|++. +.+++++|+||+|||||||||++..+. +.+ ..|+.....
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 567899999999 899999999999999999999995321 111 112211100
Q ss_pred cccccchHHHHHh---------------------hcCc----hhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCC
Q 003163 491 EYAKVPWFDSVFA---------------------DIGD----EQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIG 544 (843)
Q Consensus 491 ~~~~i~~~~~i~~---------------------~ig~----~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~ 544 (843)
.....++++++-. .-.. .+.+..+-..+||++++...| .+++.+|++|||||||
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 0111233333211 0011 122333334567766555544 5678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
|+|||.....+. .++..|++ .-| |++|||++..+ +.+|.+..+.+|.+..
T Consensus 178 SALDPIsT~kIE-eLi~eLk~-~yT-IviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 178 SALDPISTLKIE-ELITELKK-KYT-IVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred cccCchhHHHHH-HHHHHHHh-ccE-EEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999998888874 66677774 456 99999999777 6889999999998754
No 138
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=190.67 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=109.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~---~i~~ 497 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~vfQ-~~~lfp~~tv 95 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE-GQIFIDGEDVTHRSIQQRDICMVFQ-SYALFPHMSL 95 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCCH
Confidence 45689999999 8899999999999999999999976543211 11 1111 100 1111
Q ss_pred HHH---------------------HHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FDS---------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.++ ++..++...........+|+++++ ++.+.+++.+|+++|||||++|||+.....+
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 111 222334444444555677876655 4555677899999999999999999888877
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.. .+..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 176 ~~-~l~~l~~~~g~t-ii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 176 RE-KIRELQQQFNIT-SLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HH-HHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 65 445554 45887 99999998776 799999999999997654
No 139
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.76 E-value=3.5e-18 Score=182.41 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=108.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc--cccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~--~~i~ 496 (843)
++.++.+++|+ ..|++++|+||||+|||||||+|+++.... .| .++|.... ....
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 45799999999 899999999999999999999997653211 11 12222100 0011
Q ss_pred hHHH-------------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~~-------------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.++ .+..++..+........+|+++++. ..+.+++.+|+++||||||+|+|+.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1111 1222333333344455677766554 4455678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+.++.
T Consensus 172 ~~~~l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 219 (256)
T TIGR03873 172 AQLETL-ALVRELAATGVT-VVAALHDLNLAASYCDHVVVLDGGRVVAAG 219 (256)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCEEEec
Confidence 766664 566677766777 99999998887 689999999999987653
No 140
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.76 E-value=4.7e-18 Score=181.31 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=105.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------ccccccccc--cc--ch--------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA--KV--PW-------- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~~--~i--~~-------- 497 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .+ .+
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~ 94 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD-EGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP 94 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCccCEEEeccccccccccChhHHHHHhccc
Confidence 45689999999 899999999999999999999997653221 12 122321100 00 00
Q ss_pred ------HHHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCe
Q 003163 498 ------FDSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSL 569 (843)
Q Consensus 498 ------~~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t 569 (843)
+..++..++..+.+......+|+++++.. .+.+++.+|+++||||||+|||+.....+. .++..+.+. |.+
T Consensus 95 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~t 173 (251)
T PRK09544 95 GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDCA 173 (251)
T ss_pred cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCCE
Confidence 11223445555556667778887766554 445678999999999999999997777665 555555554 787
Q ss_pred EEEEEccchhHH-hhhccccceeeeEEE
Q 003163 570 LTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 570 ~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
||++||+.+.. .+++++..+.+ .+.
T Consensus 174 -iiivsH~~~~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 174 -VLMVSHDLHLVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred -EEEEecCHHHHHHhCCEEEEECC-ceE
Confidence 99999998876 68888877754 443
No 141
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.4e-18 Score=183.35 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i 495 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ...
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 45689999999 899999999999999999999997653211 11 12221100 001
Q ss_pred chHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+.++ ++..++....+......+|+++++. ..+.+++.+|++|||||||+|||+....
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111 1223344334444556778766554 4555678999999999999999996666
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 554 ALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 554 al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+. .++..+.+. +.+ ||++||+.+...+|+++..+.+|.+...
T Consensus 180 ~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 180 EIK-KIMVDLRKTRKKT-LISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHH-HHHHHHHHhcCcE-EEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 664 566666655 476 9999999887778999999999998654
No 142
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.76 E-value=4.2e-18 Score=191.44 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=109.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~---~i~~ 497 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++..... |. +++. ... .+.+
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~-G~I~~~g~~i~~~~~~~r~ig~vfQ-~~~lfp~ltv 103 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS-GRIMLDGQDITHVPAENRHVNTVFQ-SYALFPHMTV 103 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHCCEEEEec-CcccCCCCCH
Confidence 45688999999 8899999999999999999999987543211 10 1111 000 1111
Q ss_pred HHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.++ ++..++..........++|+++++. +.+.+++.+|+++|||||++|||+.....+
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 111 2333444445555666788766554 555567899999999999999999777777
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.. .+..+. +.|.| +|++|||.+.+ .+++++..+.+|.+....
T Consensus 184 ~~-~L~~l~~~~g~t-iI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 184 QN-ELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 54 555554 45887 99999998765 799999999999997543
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.2e-18 Score=184.72 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=108.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc---c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~---~ 493 (843)
++.++++++|+ ..|++++|+||||+|||||+|+|+++.... .| .++|.... .
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS-SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 35699999999 899999999999999999999997653211 11 12222110 0
Q ss_pred ccchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
...+.++ .+..+|...........+|+++++.. .+.+++.+|++|||||||+|||+..
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~ 176 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176 (283)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 0111111 12233333334445566787766554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+.++.
T Consensus 177 ~~~l~-~~l~~l~~~~g~t-illvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 177 VSEIM-KLLVEMQKELGLT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHH-HHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77665 555666654 787 99999999887 589999999999987654
No 144
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.3e-18 Score=184.33 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=109.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------ccccccccc-cc--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEYA-KV-- 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~~-~i-- 495 (843)
+.++++++|+ ..|++++|+|||||||||||++|+++... ..| .++|..... .+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 5699999999 89999999999999999999999765321 111 122211000 00
Q ss_pred chH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+. ..++..+|....+.....++|+++++...+ .+++.+|++|||||||+|||+....
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 001 112233444444555667788777655544 5678999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 554 ALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 554 al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+. .++..+.+ .|.| ||++||+++....|+++..+.+|.+..+.
T Consensus 182 ~l~-~~l~~l~~~~g~t-illvtH~~~~~~~~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 182 EVV-NTIKELNKKYGIT-IILITHYMEEAVEADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHH-HHHHHHHHhcCCE-EEEEecChHHHhcCCEEEEEECCEEEEec
Confidence 775 56666655 4887 99999999888779999999999987653
No 145
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.76 E-value=4.8e-18 Score=181.41 Aligned_cols=155 Identities=17% Similarity=0.243 Sum_probs=107.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------------------c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------------L 485 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------------------~ 485 (843)
++.++.+++|+ ..|++++|+||||+||||||++|++.... ..| .
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 45689999999 89999999999999999999999765321 111 1
Q ss_pred ccccccc--cccchHHHH----------------------HhhcCchhhH-hhhhhhhhHHhHHH-HHHHHhCCCCcEEE
Q 003163 486 HILSSEY--AKVPWFDSV----------------------FADIGDEQSL-SQSLSTFSGHLKQI-GNIISQSTSQSLVL 539 (843)
Q Consensus 486 ~vpa~~~--~~i~~~~~i----------------------~~~ig~~q~i-~~~lstfS~~~~~l-~~il~~a~~p~LLL 539 (843)
++|.... ......+++ +..+|..... ......+|+++++. ..+.+++.+|+++|
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111000 001111221 2223333222 34456677776555 44556789999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||||+|||+.....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|++..+
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~l~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 176 FDEPTSALDPELVGEVL-RIMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999997777665 566677767887 99999998876 48999999999998754
No 146
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.6e-18 Score=193.13 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=109.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY- 492 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~- 492 (843)
+..+++++++|+ ..|++++|+||||||||||||+|+++.... .| .|++....
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~-sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT-RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 445689999999 899999999999999999999997653211 11 12221100
Q ss_pred -cccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCCh
Q 003163 493 -AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 493 -~~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp 549 (843)
....+.+ .++..++..+......+.+|+++++...+ .+++.+|++|||||||+||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 0001111 12334455445555667788877665554 567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 198 ~~r~~l~-~~L~~l~~~~g~T-IIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 198 LIRTEMQ-DELVKLQAKHQRT-IVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHHHHH-HHHHHHHHHCCCe-EEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 7777765 45555554 5787 99999998776 68999999999988654
No 147
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.4e-18 Score=182.67 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=107.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~--~i~ 496 (843)
++.++++++|+ .+|++++|+|||||||||||++|+++... ..| .++|..... ...
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 45689999999 88999999999999999999999765321 111 112210000 001
Q ss_pred hHH-------------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFD-------------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.+ .++..++...........+|+++++. ..+.+++.+|+++||||||+|||+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 111 12223344444445556778766554 5555678999999999999999997
Q ss_pred hHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|++..+
T Consensus 178 ~~~~l~-~~L~~l~~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 178 HQIDLL-ELLSELNREKGYT-LAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 777765 55556665 4777 99999998755 79999999999998754
No 148
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.76 E-value=4.2e-18 Score=170.25 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=112.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc------cccccccccch---------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------ILSSEYAKVPW--------------- 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~------vpa~~~~~i~~--------------- 497 (843)
++..++.+++|+ +.|+++.|+||+|||||||||+|.+...... |.. +..-....+|+
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~-G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR-GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC-ceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 446799999999 9999999999999999999999954332211 110 00000011111
Q ss_pred -----HH---------------------HHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 -----FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 -----~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
++ ..+...|..+......+.+||+.++ +..+.+.++.|.+||-||||.+|||.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 11 2234445555555556778875555 45555679999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd~ 599 (843)
....+ +.+++.+...|.| ||++|||.++.. +..++..+.+|.+.-|.
T Consensus 172 ~s~~i-m~lfeeinr~GtT-Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 172 LSWEI-MRLFEEINRLGTT-VLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHH-HHHHHHHhhcCcE-EEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 77776 4688889999997 999999999984 77788899999998765
No 149
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.5e-18 Score=174.40 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccc----------cccchHHHHHhhcCchhhH
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY----------AKVPWFDSVFADIGDEQSL 511 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~----------~~i~~~~~i~~~ig~~q~i 511 (843)
.++.+++|+ ..|++++|+||||+|||||||+|+++.... .|........ ..+.+..+-...+ ..++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~--~~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF--SGTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc--cchH
Confidence 588999999 889999999999999999999997764332 2322111000 0111111100001 0122
Q ss_pred hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 512 SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 512 ~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
..++ +|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++..+.+ +.+ +|++||+.+....|+++..+
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL-EALRALAK-GKT-VIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHhcC-CCE-EEEEecCHHHHHhCCEEEEE
Confidence 2332 77666554 4455678999999999999999997777664 55666654 676 99999999888667777666
Q ss_pred eee
Q 003163 591 ENA 593 (843)
Q Consensus 591 ~ng 593 (843)
.+|
T Consensus 168 ~~g 170 (171)
T cd03228 168 DDG 170 (171)
T ss_pred cCC
Confidence 654
No 150
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=4.1e-18 Score=183.11 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=107.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc--------cccccc--ccccchHHHH-------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSE--YAKVPWFDSV------- 501 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~--------~vpa~~--~~~i~~~~~i------- 501 (843)
....++.+++|+ .+|++++|+|||||||||||++|+++.... .|. +++... ...+.+.+.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~ 113 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCM 113 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHc
Confidence 345688999999 899999999999999999999998764321 121 111000 0011112111
Q ss_pred --------------HhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 003163 502 --------------FADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 566 (843)
Q Consensus 502 --------------~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~ 566 (843)
+..++....+......+|+++++ +..+.+++.+|++||||||++|+|+.....+. .++..+.+.
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~-~~L~~~~~~ 192 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQ 192 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHH-HHHHHHHHC
Confidence 12223333444455677876655 45556778999999999999999997777665 455566667
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 567 GSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 567 g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
|.+ +|++||+.+.. .+|+++..+.+|++..
T Consensus 193 g~t-iIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 193 NKT-IFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCE-EEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 887 99999998775 6899998898888854
No 151
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.6e-18 Score=185.47 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=108.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc-cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~-~~ 494 (843)
..++++++|+ ..|++++|+||||||||||||+|+++..... | .++|.... ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT-GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 4699999999 8999999999999999999999976532111 1 12222100 00
Q ss_pred c--chHH---------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCCh
Q 003163 495 V--PWFD---------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 495 i--~~~~---------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp 549 (843)
+ .+.+ .++..+|.. +.......++|+++++...+ .+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 0 1111 122334443 33345566788776655544 567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+ ..++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 179 ~~~~~l-~~~l~~l~~~~g~t-vl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 179 QSKRQV-MRLLKSLQTDENKT-IILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHH-HHHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 776666 466666665 4787 99999998876 689999999999987653
No 152
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.2e-18 Score=183.41 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=108.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---cccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i~ 496 (843)
..++.+++|+ ..|++++|+||||||||||+|+|+++.... .| .+++.... ....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 4589999999 899999999999999999999997653211 11 12221100 0011
Q ss_pred hHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.++ ++..++....+......+|+++++. ..+.+++.+|++|||||||+|||+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1111 1222344444444556678766554 45557789999999999999999977776
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 176 l~-~~l~~l~~~~g~t-vli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 176 LI-DFLNDLPETYGMT-VIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 64 566666654 787 99999998876 699999999999987653
No 153
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=183.55 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc--cccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~--~~i~ 496 (843)
++.++.+++|+ ..|++++|+||||||||||+|+|+++... ..| .+++.... ....
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 45789999999 89999999999999999999999765321 111 12221100 0001
Q ss_pred hHH-------------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFD-------------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.+ .++..++....+......+|+++++. ..+.+++.+|+++||||||+|||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 111 12233344333444556678766554 5555778999999999999999997
Q ss_pred hHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.. .|.+ ||++||+.++. .+|+++..+.+|++...
T Consensus 182 ~~~~~~-~~l~~l~~~~~~t-iii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 182 HQVDVL-ALVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 766664 55666654 4787 99999998776 68999999999998654
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.4e-18 Score=179.47 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=106.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|. ....+ .
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q-~~~~~~~t 92 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDVIDLRRKIGMVFQ-QPHLFEGT 92 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcChHHhhhcEEEEec-Cchhchhh
Confidence 45689999999 88999999999999999999999765321 111 11221 10000 0
Q ss_pred hH-----------------HHHHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 497 WF-----------------DSVFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 497 ~~-----------------~~i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
+. ..++..++.. .........+|+++++. ..+.+++.+|+++||||||+|||+.....+.
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~- 171 (241)
T PRK14250 93 VKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE- 171 (241)
T ss_pred HHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 01 1123334443 23344556778766554 4455678999999999999999996666664
Q ss_pred HHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 558 SLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 558 ~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 ~~l~~~~~~~g~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 172 ELIVKLKNKMNLT-VIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred HHHHHHHHhCCCE-EEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 56666665 4787 99999998875 68999999999998654
No 155
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=184.06 Aligned_cols=156 Identities=16% Similarity=0.166 Sum_probs=109.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc--cc---------------------ccccccc---cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GL---------------------HILSSEY---AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--G~---------------------~vpa~~~---~~ 494 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++...... |. +++.... ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 4589999999 88999999999999999999999876533210 11 1121000 00
Q ss_pred cchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.++ ++..++...........+|+++++. ..+.+++.+|++|||||||+|||+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 011111 1223344444444556778766554 555577899999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
..+. .++..+.+ .|.+ ||++||+.+...+|+++..+.+|.+..+.
T Consensus 180 ~~l~-~~l~~l~~~~g~t-vli~tH~~~~~~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 180 EQIL-KLIRKLKKKNNLT-VISITHDIDEANMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 7765 55566655 4787 99999999888889999999999987653
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.5e-18 Score=182.97 Aligned_cols=155 Identities=15% Similarity=0.047 Sum_probs=106.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc---c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV---P 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i---~ 496 (843)
+.++.+++|+ ..|++++|+||||||||||+++|+++.... .| .++|......+ .
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 4589999999 899999999999999999999997653211 11 12221100000 0
Q ss_pred hHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.+ .++..++..+........+|+++++. ..+.+++.+|+++||||||+|||+.....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 180 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 001 11223333333444556678766554 55556789999999999999999977777
Q ss_pred HHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 555 LGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 555 l~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+. .++..+.+ .|.| ||++||+.+....|+++..+.+|.+..+.
T Consensus 181 l~-~~L~~~~~~~~~t-iiivtH~~~~~~~~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 181 LL-DLVRKVKSEHNIT-IISITHDLSEAMEADHVIVMNKGTVYKEG 224 (269)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCchHHhcCCEEEEEECCEEEEec
Confidence 65 45555654 4777 99999998887778999999999987654
No 157
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=3.2e-18 Score=199.06 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=111.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccc-----
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA----- 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~----- 493 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++.... .|. +++.....
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL-SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 34689999999 899999999999999999999997653221 111 11110000
Q ss_pred -----ccch-------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 494 -----KVPW-------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 494 -----~i~~-------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
.+.+ +..++..++..+......+++|+++++...+ .+++.+|+++||||||+||||.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 0000 1123444555555566677889877665555 56789999999999999999977766
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+.++
T Consensus 174 l~-~~l~~~~~~g~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 174 LA-ELLASLHQSGIT-LVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HH-HHHHHHHhcCCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 64 566667777887 99999998766 68999999999998764
No 158
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.76 E-value=3.7e-18 Score=177.73 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=102.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~--i~~ 497 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .| .+++. .... ..+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT-SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCeEEECCEEhHHCCHHHHHhhEEEeCC-CCccccchH
Confidence 4689999999 889999999999999999999997653211 11 12221 1000 011
Q ss_pred HHH---------------HHhhcCchhhHhhh-----------hhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDS---------------VFADIGDEQSLSQS-----------LSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~---------------i~~~ig~~q~i~~~-----------lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+. .+..++..+.+... ...+|+++++... +.+++.+|+++||||||+|||+.
T Consensus 95 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~ 174 (220)
T cd03245 95 RDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174 (220)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 111 12222332222221 2478877665544 45678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
....+. .++..+.+. .+ ||++||+.++..+|+++..+.+|.+..
T Consensus 175 ~~~~l~-~~l~~~~~~-~t-ii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 175 SEERLK-ERLRQLLGD-KT-LIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHH-HHHHHhcCC-CE-EEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 777765 555556553 66 999999998888999999999888753
No 159
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.76 E-value=4.7e-18 Score=178.59 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=103.0
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc---cccc-------------------ccccccc----cccch
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------HILSSEY----AKVPW 497 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~---q~G~-------------------~vpa~~~----~~i~~ 497 (843)
+.+++|+ ..|++++|+||||||||||||+|+++.... ..|. +++.... ..+..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 5678888 889999999999999999999998775431 2221 1111000 00111
Q ss_pred HHH---------------------HHhhcCch---hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 498 FDS---------------------VFADIGDE---QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 498 ~~~---------------------i~~~ig~~---q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
.+. ++..++.. .........+|+++++. ..+.+++.+|+++||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 111 11222222 22344556788766555 445567899999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+. .++..+.+ .|.| ||++||+.+.. .+++++..+.+|.+..+
T Consensus 162 ~~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 162 ARVL-KLLRELRQLFGTG-ILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7665 55555655 4777 99999998776 68999999999998764
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.9e-18 Score=183.67 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=106.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------------cccccccc-c-
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------------~~vpa~~~-~- 493 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|.... .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 3589999999 89999999999999999999999765321 111 12222100 0
Q ss_pred -ccchHHH---------------------HHhhcCchh-hHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 494 -KVPWFDS---------------------VFADIGDEQ-SLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 -~i~~~~~---------------------i~~~ig~~q-~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
...+.++ ++..++... ........+|+++++... +.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 0011111 112233331 234445667877665544 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+.|.| ||++||+.++. .+|+++..+.+|.+...
T Consensus 179 ~~~~~l~-~~l~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 179 KGRKELM-TLFKKLHQSGMT-IVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 7766665 556666666787 99999998876 68999999999998754
No 161
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=4.2e-18 Score=181.46 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=116.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccc----------------------cc---ccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS----------------------EY---AKV 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~----------------------~~---~~i 495 (843)
..+.++++|+ +.|++++|+|++|+|||||+|+|.++..+...-.++... +. +..
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 4688999999 999999999999999999999997654322210011000 00 000
Q ss_pred ch---------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PW---------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~---------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+ +..++..+|..+....+.+.+||++++...|+ +++.+|++||+|||||+|||....
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 01 12345566777777888889998887766665 669999999999999999998888
Q ss_pred HHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 554 ALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 554 al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.+. .++..+. +.|.| |+++||.++.. .+|+++..+.+|.+...+
T Consensus 179 sIL-~LL~~In~~lglT-IvlITHEm~Vvk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 179 SIL-ELLKDINRELGLT-IVLITHEMEVVKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEechHHHHHHHhhhheEeeCCEEEEec
Confidence 886 4555555 45887 99999999987 599999999999997654
No 162
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.76 E-value=5.2e-18 Score=182.12 Aligned_cols=155 Identities=14% Similarity=0.143 Sum_probs=106.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc---
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--- 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--- 492 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... ..| .++|....
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 35789999999 89999999999999999999999765321 111 12222100
Q ss_pred -cccchHH----------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 493 -AKVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 493 -~~i~~~~----------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
....+.+ .++..++.. .........+|+++++...+ .+++.+|++|||||||+||
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L 181 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0011111 122333432 23344556778776655544 5678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 548 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+.....+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 182 D~~~~~~l~-~~l~~~~~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 182 DMVLQAVIL-ELLRKLQQAFGTA-YLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred CHHHHHHHH-HHHHHHHHhcCcE-EEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 997766665 55555554 4777 99999999887 58999999999998754
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.76 E-value=6.9e-18 Score=175.17 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=102.8
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc--ccchHHH--
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS-- 500 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~--~i~~~~~-- 500 (843)
..+++|+ ..|++++|+||||||||||+|+|+++.... .| .++|..... .....++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA-SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 4578888 788999999999999999999997653211 11 122221000 0111111
Q ss_pred -------------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 501 -------------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 501 -------------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
++..++..+........+|+++++... +.+++.+|+++||||||+|+|+.....+. .++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML-ALV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHH
Confidence 223334444444455677876665544 45678999999999999999997777665 555
Q ss_pred HHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 561 EAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 561 e~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+.+ .+.| ||++||+.++. .+++++..+.+|.+...
T Consensus 172 ~~~~~~~~~t-ii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 172 KQLCSERQRT-LLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHhcCCE-EEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 56654 4776 99999998775 68999999999988654
No 164
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=5e-18 Score=180.58 Aligned_cols=151 Identities=20% Similarity=0.215 Sum_probs=106.3
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccc--cccchH-
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVPWF- 498 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~--~~i~~~- 498 (843)
++.+++|+ ..|++++|+||||||||||+++|+++.. . .|. ++|.... ......
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 67889999 8899999999999999999999976532 1 221 2221000 000111
Q ss_pred -------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCC-------CCcEEEEecCCCCCChhh
Q 003163 499 -------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQST-------SQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 -------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~-------~p~LLLLDEP~sGlDp~e 551 (843)
..++..++..+........+|+++++...++ +++. +|+++||||||+|||+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 1223334444445556677888777666555 4454 679999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~e-l~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+.|.| ||++||+.+ +..+|+++..+.+|.+..+
T Consensus 169 ~~~l~-~~L~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 169 QAALD-RLLSELCQQGIA-VVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 77664 566666666787 999999987 4579999999999998754
No 165
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.75 E-value=7.1e-18 Score=180.24 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=107.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------------------cccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------------SGLHILSS 490 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------------------~G~~vpa~ 490 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++..... ...++|..
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 35689999999 8999999999999999999999976532100 01122221
Q ss_pred ccc----ccchH----------------------HHHHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEec
Q 003163 491 EYA----KVPWF----------------------DSVFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDE 542 (843)
Q Consensus 491 ~~~----~i~~~----------------------~~i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDE 542 (843)
... .+... ..++..++.. ..+.....++|+++++. ..+.+++.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 100 00001 1122333443 23445566778766554 45556789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEec
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 599 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd~ 599 (843)
||+|||+.....+. .++..+.+ .|.+ ||++||+.++.. +|+++..+.+|.+....
T Consensus 178 Pt~~LD~~~~~~l~-~~l~~~~~~~~~t-ii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 178 PTGGLDVSVQARLL-DLLRGLVRELGLA-VVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred CcccCCHHHHHHHH-HHHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999997776665 45555554 4777 999999998884 89999999999987543
No 166
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.1e-18 Score=183.85 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=103.9
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------------cccccccc-c-
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------------LHILSSEY-A- 493 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------------~~vpa~~~-~- 493 (843)
.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... .
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE-TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 589999999 889999999999999999999997653211 11 12221100 0
Q ss_pred -ccchHHH---------------------HHhhcCch-hhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 494 -KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 -~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
...+.++ ++..++.. .......+.+|+++++.. .+.+++.+|++|||||||+|||+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 0011111 11222321 223344566787766554 44567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 184 ~~~~~l~-~~l~~~~~~~~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 184 KGEEDFI-NLFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHH-HHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 7766664 55555654 4777 99999998765 78999999999998654
No 167
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.75 E-value=3.9e-18 Score=173.86 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=93.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc---c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~---~ 493 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45689999999 899999999999999999999997653211 11 12222100 0
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
...+.+ .++..++..+......+.+|+++++. ..+.+++.+|+++||||||+|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 001111 12223344444455556788766555 44557789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
...+. .++..+.+.|.+ ||++||+.++
T Consensus 163 ~~~~~-~~l~~~~~~~~t-ili~sH~~~~ 189 (190)
T TIGR01166 163 REQML-AILRRLRAEGMT-VVISTHDVDL 189 (190)
T ss_pred HHHHH-HHHHHHHHcCCE-EEEEeecccc
Confidence 77664 566666666887 9999999764
No 168
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.6e-18 Score=182.40 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=107.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------cccccccc---cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------~~vpa~~~---~~ 494 (843)
..++.+++|+ ..|++++|+||||||||||+|+|+++.... .| .++|.... ..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4689999999 899999999999999999999997653211 11 12222100 00
Q ss_pred cchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.++ ++..++...........+|+++++. ..+.+++.+|+++||||||+|+|+...
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111111 1222333333334456677766555 445567899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 174 ~~l~-~~l~~l~~~~~t-il~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 174 SQIM-KLLYDLNKEGIT-IIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 7765 555666666787 99999998876 589999999999987653
No 169
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.75 E-value=6.3e-18 Score=190.01 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=110.0
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-----------------------------ccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILS 489 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-----------------------------~~vpa 489 (843)
+...++++++|+ ..|++++|+||||||||||||+|+++.... .| .+++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 566789999999 899999999999999999999997653211 11 01111
Q ss_pred ccccc---cchHHH---------------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCC
Q 003163 490 SEYAK---VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIG 544 (843)
Q Consensus 490 ~~~~~---i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~ 544 (843)
.... ..+.++ ++..+|...........+|+++++...+ .+++.+|++|||||||
T Consensus 114 -~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 114 -KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred -CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0000 111111 2233344444445556788877665555 5678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+||||.....+...+. .+.+ .+.| ||++|||.+.. .+++++..+.+|.+...
T Consensus 193 s~LD~~~r~~l~~~L~-~l~~~~~~T-II~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 193 SALDPLIRTQLQDELL-ELQAKLNKT-IIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred ccCCHHHHHHHHHHHH-HHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999988887765554 4554 4787 99999998875 79999999999998754
No 170
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.75 E-value=7.2e-18 Score=179.86 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=105.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc---ccc-------------------ccccccccccc---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSG-------------------LHILSSEYAKV--- 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~---q~G-------------------~~vpa~~~~~i--- 495 (843)
+.++.+++|+ ..|++++|+||||+||||||++|+++.... ..| .++|......+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 4689999999 899999999999999999999998764320 112 12222110000
Q ss_pred -chHHH-------------------HHhhcCchh---hHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 496 -PWFDS-------------------VFADIGDEQ---SLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 496 -~~~~~-------------------i~~~ig~~q---~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+... ++..++... .+......+|+++++. ..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 00011 122223222 1344456788766554 45556789999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ .|.+ ||++||+.+.. .+++++..+.+|.+..+
T Consensus 176 ~~~l~-~~L~~~~~~~g~t-il~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 176 QARIL-DLLESIVQKRALG-MLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHH-HHHHHHHHhcCcE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 77665 55555654 4777 99999998876 68999999999998754
No 171
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.6e-18 Score=190.05 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=109.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------cccccccc---ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~---~i~~ 497 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++..... |. +++. ... .+.+
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~vfQ-~~~lfp~ltv 108 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA-GQIMLDGVDLSHVPPYQRPINMMFQ-SYALFPHMTV 108 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeC-CCccCCCCCH
Confidence 45688999999 8899999999999999999999987643211 11 1111 100 1111
Q ss_pred HHH---------------------HHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 FDS---------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~~~---------------------i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
.++ ++..++...........+|+++++ ++.+.+++.+|++||||||++|||+.....+
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 222 222333333344455667776655 5555677899999999999999999888777
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+.+.+.+.|.| +|++|||.+.+ .+++++..+.+|++....
T Consensus 189 ~~~l~~l~~~~g~t-ii~vTHd~~ea~~laDri~vl~~G~i~~~g 232 (377)
T PRK11607 189 QLEVVDILERVGVT-CVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232 (377)
T ss_pred HHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEeCCEEEEEc
Confidence 65555555566887 99999998765 799999999999987543
No 172
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=5.3e-18 Score=198.23 Aligned_cols=155 Identities=19% Similarity=0.181 Sum_probs=110.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------ccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~--~~i 495 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD-SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 45689999999 889999999999999999999997653211 111 2221000 000
Q ss_pred chHH-----------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 496 PWFD-----------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 496 ~~~~-----------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
.+.+ .++..++..........++|+++++...+ .+++.+|++|||||||+|||+.....+.
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~- 180 (510)
T PRK15439 102 SVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF- 180 (510)
T ss_pred cHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH-
Confidence 1111 12333444444455667888877665555 5678999999999999999997777665
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 558 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 181 ~~l~~~~~~g~t-iiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 181 SRIRELLAQGVG-IVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 566667777887 99999998776 68999999999998764
No 173
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8e-18 Score=181.41 Aligned_cols=155 Identities=17% Similarity=0.129 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------ccccccccccc----ccch-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEYA----KVPW- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------~G~~vpa~~~~----~i~~- 497 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++..... .-.++|..... ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 35689999999 8899999999999999999999976532100 01122221000 0000
Q ss_pred ------------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 498 ------------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 498 ------------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
....+..++...........+|+++++.. .+.+++.+|+++||||||+|||+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 01122334444444555667887766554 44567899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
..+. .++..+.+.|.+ ||++||+.+.. .+|++...+ +|++...
T Consensus 179 ~~l~-~~L~~~~~~g~t-viivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 179 ARII-SLLRELRDEGKT-MLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred HHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 7765 566667666887 99999998765 688877544 8887654
No 174
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6e-18 Score=177.89 Aligned_cols=149 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------cccccccc--cccchHHH----
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWFDS---- 500 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~--~~i~~~~~---- 500 (843)
+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ....+.++
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 67777 78899999999999999999999765321 111 12222100 00111111
Q ss_pred -----------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 501 -----------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 501 -----------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
++..+|....+......+|+++++... +.+++.+|+++||||||+|||+.....+. .++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~-~~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 223344444445555678877665544 45678999999999999999997777665 55555
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 563 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 563 L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+.. .|.| +|++||+.+.. .+++++..+.+|.+..+
T Consensus 175 ~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 175 VCQERQLT-LLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred HHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 544 4777 99999999875 68999999999998754
No 175
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=9.3e-18 Score=177.21 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=108.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------cccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~--~~i~~~ 498 (843)
++.++.+++|+ .+|++++|+||||+|||||+|+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 35689999999 89999999999999999999999765321 111 12221000 000111
Q ss_pred ---------------------HHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
..++..++..+........+|+++++. ..+.+++.+|+++|||||++|+|+.....+.
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 170 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR 170 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 122333444444455556788766554 5555678999999999999999996666664
Q ss_pred HHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+. +++ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 171 -~~l~~~~~~~~~t-vli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 171 -SWLRKLHDEVHVT-TVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred -HHHHHHHHhcCCE-EEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 566666665 777 99999998864 78999999999998754
No 176
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.75 E-value=8e-18 Score=175.55 Aligned_cols=151 Identities=21% Similarity=0.265 Sum_probs=104.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~--~~ 494 (843)
..++++++|. ..|++++|+||||+|||||+++|+++... ..| .++|.... ..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 5689999999 88999999999999999999999765311 111 11111000 00
Q ss_pred cch----------------------HHHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 495 VPW----------------------FDSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 i~~----------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
..+ +..++..++....+......+|+++++. ..+.+++.+|+++|||||++|+|+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 011 1112233344444455556777766554 44556789999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
...+. .++..+.+ .+.+ +|++||+.++..+|+++..+.+|.+
T Consensus 177 ~~~l~-~~l~~~~~~~~~t-ii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 177 GRDVV-ELMQKLAREQGCT-ILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHhhCCEEEEEECCEE
Confidence 66664 56666654 5787 9999999998889999888887764
No 177
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.75 E-value=6.2e-18 Score=176.04 Aligned_cols=153 Identities=14% Similarity=-0.025 Sum_probs=103.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc--cc-----cc-c---cccchHHHHH--------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--LS-----SE-Y---AKVPWFDSVF-------- 502 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v--pa-----~~-~---~~i~~~~~i~-------- 502 (843)
+|+++++|. ..|++++|+||||||||||||+|+++... ..|... .. .. . ..+...+++.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 368899999 88999999999999999999999876432 223221 10 00 0 0111111110
Q ss_pred ----------hhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEE
Q 003163 503 ----------ADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 571 (843)
Q Consensus 503 ----------~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~v 571 (843)
..++.........+.+|+++++. ..+.+++.+|+++|||||++++|+.....+...+.+.+. +.+ +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~-i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKG-L 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCc-E
Confidence 01111222233456778777655 455677899999999999999999777776554545443 345 8
Q ss_pred EEEccchhHH-hhhccccceeeeEEEEec
Q 003163 572 IATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 572 litTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|++||++... .+|+++..+.+|.+.+..
T Consensus 157 i~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 157 IVLTHNPRLIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred EEEECCHHHHHHhcCeeEEEECCeEEEeC
Confidence 9999998876 589999999999988654
No 178
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.75 E-value=8e-18 Score=180.92 Aligned_cols=154 Identities=16% Similarity=0.066 Sum_probs=104.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc----ccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY----AKV 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~----~~i 495 (843)
..++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ...
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 4689999999 899999999999999999999997653211 11 11222100 000
Q ss_pred chH----------------------HHHHhhcCch-hhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 496 PWF----------------------DSVFADIGDE-QSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 496 ~~~----------------------~~i~~~ig~~-q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+. ..++..++.. .......+.+|+++++.. .+.+++.+|++|||||||+|||+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 000 1112233331 222334466787766554 4456789999999999999999976
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 185 ~~~l~-~~l~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 185 RSQLI-NLMLELQEKQGIS-YIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHH-HHHHHHHHHcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 66665 55555655 4777 99999998777 57999999999998754
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.75 E-value=6.1e-18 Score=178.20 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=104.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc-cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY-AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~-~~i~~~ 498 (843)
..++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|.... ....+.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 5689999999 899999999999999999999997653211 11 11221000 000111
Q ss_pred HHHH---------------hhcCchh-----------hHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSVF---------------ADIGDEQ-----------SLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i~---------------~~ig~~q-----------~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++. ...+..+ .+......+|+++++... +.+++.+|+++||||||+|||+..
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 1110 0011111 112234678877765554 456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+ |.+ ||++||+.++...|+++..+.+|.+..+.
T Consensus 174 ~~~l~-~~l~~~~~-~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 174 EHAIM-RNMHDICA-GRT-VIIIAHRLSTVKNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEc
Confidence 77765 55555654 776 99999999888889999999999987653
No 180
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.75 E-value=9e-18 Score=178.73 Aligned_cols=155 Identities=18% Similarity=0.134 Sum_probs=105.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------------ccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------LHILS 489 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------------~~vpa 489 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++... ..| .+++.
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 34688999999 88999999999999999999999765321 111 11121
Q ss_pred cccc----ccchHHH----------------------HHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEe
Q 003163 490 SEYA----KVPWFDS----------------------VFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLD 541 (843)
Q Consensus 490 ~~~~----~i~~~~~----------------------i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLD 541 (843)
.... .+..+++ ++..++.. ..+......+|+++++. ..+.+++.+|+++|||
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1000 0000111 12233332 23344556677766554 5555679999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003163 542 EIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 598 (843)
Q Consensus 542 EP~sGlDp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd 598 (843)
|||+|||+.....+.. ++..+. +.|.+ +|++||+.++.. +++++..+.+|.+...
T Consensus 174 EP~~~LD~~~~~~l~~-~l~~~~~~~~~t-ii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 174 EPTGGLDVSVQARLLD-LLRGLVRDLGLA-VIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred CCCccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999977777654 455554 45787 999999988774 8999999999998654
No 181
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=178.81 Aligned_cols=155 Identities=14% Similarity=0.197 Sum_probs=104.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ...|. ++|....
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 45689999999 89999999999999999999999876431 11221 1111000
Q ss_pred -cccchHHHH---------------------HhhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 493 -AKVPWFDSV---------------------FADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 493 -~~i~~~~~i---------------------~~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
......+++ +..++. ...+......+|+++++. ..+.+++.+|+++||||||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 000111111 111111 111223345677766554 55556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 184 ~LD~~~~~~l~-~~l~~l~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 184 ALDPISTARIE-DLIMNLKK-DYT-IVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred ccCHHHHHHHH-HHHHHHhh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99997777664 56666654 676 99999998776 68999999999998755
No 182
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.75 E-value=1e-17 Score=177.78 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=105.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|. ..
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 91 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ-KP 91 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEec-Cc
Confidence 34688999999 899999999999999999999997765321 0121 1111 00
Q ss_pred cc--cchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP 543 (843)
.. ....+++ +..++.. ..+......+|+++++.. .+.+++.+|+++|||||
T Consensus 92 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 171 (247)
T TIGR00972 92 NPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171 (247)
T ss_pred ccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 1111111 1222332 333444566787766554 44567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 172 t~~LD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 172 TSALDPIATGKIE-ELIQELKK-KYT-IVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-cCe-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999997777664 56666665 466 99999998865 68999999999998654
No 183
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.75 E-value=7.9e-18 Score=197.21 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=108.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhccccc---------------------------------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL--------------------------------- 485 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~--------------------------------- 485 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++. +.+..|.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 45789999999 889999999999999999999998764 1111121
Q ss_pred ---------------------cccccccc---ccchHHH---------------------HHhhcCchhhHhhhhhhhhH
Q 003163 486 ---------------------HILSSEYA---KVPWFDS---------------------VFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 486 ---------------------~vpa~~~~---~i~~~~~---------------------i~~~ig~~q~i~~~lstfS~ 520 (843)
+++..... .....++ ++..+|........++++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 11110000 0011111 12223333334445677888
Q ss_pred HhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 521 HLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 521 ~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
++++...+ .+++.+|++|||||||+|||+.....+. .++..+. +.|.| ||++|||.++. .+|+++..+.+|.+..
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~t-viivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGIS-MVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 77665554 5678999999999999999997777765 5555664 45887 99999998876 6899999999998865
Q ss_pred e
Q 003163 598 D 598 (843)
Q Consensus 598 d 598 (843)
.
T Consensus 250 ~ 250 (520)
T TIGR03269 250 E 250 (520)
T ss_pred e
Confidence 3
No 184
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.74 E-value=6.9e-18 Score=196.85 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=109.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------ccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. +++.... ..+
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 45689999999 889999999999999999999997654221 111 1111000 000
Q ss_pred chHHH-------------------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCCh
Q 003163 496 PWFDS-------------------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 496 ~~~~~-------------------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+. ++..+|..+......+++|+++++...+ .+++.+|++|||||||+|||+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 11111 1223333333344567788877665555 567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 175 ~~~~~l~-~~l~~l~~~~~t-vii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 175 TETESLF-RVIRELKSQGRG-IVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 7777664 566677777887 99999998776 69999999999998654
No 185
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=176.11 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=107.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc--ccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~--~i~~~ 498 (843)
++.++++++|+ ..|++++|+||||+||||||++|++...... | .+++..... ...+.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS-GEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc-eEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 45789999999 8899999999999999999999976532211 1 111210000 00111
Q ss_pred H---------------------HHHhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 D---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+ .++..++....+......+|++++ ++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~ 170 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 122333444444455566776655 455556779999999999999999997777765
Q ss_pred HHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+. |.| ||++||+.+.. .+++++..+.+|++.+.
T Consensus 171 -~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 171 -LELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred -HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 555566654 787 99999998765 78999999999988654
No 186
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.6e-18 Score=197.23 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=109.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-ccccc----------------------ccccccc--cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~----------------------~vpa~~~--~~ 494 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++... ...|. ++|.... ..
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 45789999999 89999999999999999999999876542 11221 1111000 00
Q ss_pred cchHHH------------------------HHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCCh
Q 003163 495 VPWFDS------------------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 495 i~~~~~------------------------i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+.++ ++..++........++++|+++++... +.+++.+|++|||||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 111111 122233333334455678877765554 4567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.+.++
T Consensus 177 ~~~~~l~-~~l~~l~~~~~t-vi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 177 SETAVLL-DIIRDLKAHGIA-CIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 7777665 566667777887 99999998776 68999999999998654
No 187
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.74 E-value=6.6e-18 Score=185.28 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=109.3
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc-----c---ccccccc------------ccccchHHH--
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----G---LHILSSE------------YAKVPWFDS-- 500 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~-----G---~~vpa~~------------~~~i~~~~~-- 500 (843)
+.++++|+ .+|++++|+||||||||||||+|+++.-.... | ..+|+.+ ...+.++++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 89999999 99999999999999999999999876533220 1 0111101 011122222
Q ss_pred -------------------HHhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 501 -------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 501 -------------------i~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
+...++..+.+....+.+||+.+ |++...+++.+|+++|||||.|+||+.-+..+-..+.
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 23344555666666777887665 5555567799999999999999999988877765555
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 561 EAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+...+.|.| +|++|||...+ .+++++..+.+|.+..-
T Consensus 178 ~lh~~l~~T-~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 178 KLHERLGTT-TIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred HHHHhcCCc-EEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 533445777 99999996555 79999998888888643
No 188
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.74 E-value=9.3e-18 Score=175.78 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=104.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh--ccccc------------------ccccccc--cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGL------------------HILSSEY--AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~--~q~G~------------------~vpa~~~--~~i~~~ 498 (843)
+.++++++|+ ..|++++|+||||||||||+|+|+++... +..|. ++|.... ..+.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5789999999 89999999999999999999999776541 11221 1221000 001111
Q ss_pred HHH-------------------------HhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 499 DSV-------------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 499 ~~i-------------------------~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
+++ +..++...........+|++++ ++..+.+++.+|+++||||||+|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 111 1111222222233456776655 45555677899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEE
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~--el~~~a~~~~~v~ng~v~f 597 (843)
..+. .++..+.+.|.| +|++||+. ++..+++++..+.+|.+..
T Consensus 180 ~~~~-~~l~~~~~~~~t-iii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 180 LNLV-STLSQLARRNRI-VILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHH-HHHHHHHHCCCE-EEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 7665 566666666777 99999996 5678999999999998864
No 189
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.74 E-value=1e-17 Score=187.38 Aligned_cols=149 Identities=18% Similarity=0.102 Sum_probs=103.0
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------------ccccccc--cccchH
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY--AKVPWF 498 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------------~vpa~~~--~~i~~~ 498 (843)
+++|+ ..|++++|+||||||||||||+|+++.... .|. +++.... ..+.+.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 78888 788999999999999999999997653211 111 1111000 001111
Q ss_pred H-------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHH
Q 003163 499 D-------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 558 (843)
Q Consensus 499 ~-------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ 558 (843)
+ .++..++..........++|+++++.. .+.+++.+|+++||||||+|||+.....+. .
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~-~ 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL-P 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH-H
Confidence 1 122334444444555667887776554 445678999999999999999997777765 5
Q ss_pred HHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 559 LLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 559 lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
++..+.+. |.| +|++||+.+.. .+++++..+.+|.+...
T Consensus 173 ~L~~l~~~~g~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 173 YLERLHAEFGIP-ILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 55556554 787 99999998766 68999999999998654
No 190
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=9.4e-18 Score=173.16 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=103.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh--cccccc-ccc--------ccccccchHH---HHHhhc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLH-ILS--------SEYAKVPWFD---SVFADI 505 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~--~q~G~~-vpa--------~~~~~i~~~~---~i~~~i 505 (843)
++.++.+++|. ..|++++|+|||||||||||++|+++... +..|.. +.. .....+.+.. .++..+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 46799999999 89999999999999999999999877541 222311 100 0001111111 112222
Q ss_pred CchhhH--------hhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEc
Q 003163 506 GDEQSL--------SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATT 575 (843)
Q Consensus 506 g~~q~i--------~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitT 575 (843)
...+++ ......+|+++++ +..+.+++.+|+++||||||+|+|+.....+. .++..+.+. +.+++|++|
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL-KCIRTMADVLKTTTFVSLY 177 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH-HHHHHHHHhCCCEEEEEEc
Confidence 333333 2344567766655 45556778999999999999999997777665 566666554 555244455
Q ss_pred cch-hHHhhhccccceeeeEEEE
Q 003163 576 HHG-ELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 576 Hd~-el~~~a~~~~~v~ng~v~f 597 (843)
|+. ++..+++++..+.+|.+..
T Consensus 178 h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 178 QASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCHHHHHHhCCeEEEEECCEEEe
Confidence 664 5668999999999998864
No 191
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=8.6e-18 Score=177.16 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=102.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccc-cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY-AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~-~~i~~~ 498 (843)
..++.+++|+ ..|++++|+|||||||||||++|+++... ..|. +++.... ....+.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 4688999999 88999999999999999999999765321 1121 1111000 000111
Q ss_pred HHHHh---------------hcCchhh-----------HhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSVFA---------------DIGDEQS-----------LSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i~~---------------~ig~~q~-----------i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++.. ..+..+. +......+|+++++...+ .+++.+|+++||||||+|||+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11110 0011111 111234678776655544 56788999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+. .|.+ ||++||+.+...+|+++..+.+|.+..+
T Consensus 175 ~~~l~-~~l~~~~-~g~~-vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 175 EKLVQ-EALDRAM-KGRT-TIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHH-HHHHHhc-CCCE-EEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 77664 5566665 6776 9999999988888999999999998754
No 192
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=195.86 Aligned_cols=155 Identities=12% Similarity=0.139 Sum_probs=109.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 45689999999 899999999999999999999997653211 11 12221000 001
Q ss_pred chHHH----------------------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 496 PWFDS----------------------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 496 ~~~~~----------------------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
.+.++ ++..+|..+......+++|+++++...+ .+++.+|++|||||||+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 11111 2223333333445567788877666555 467899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||+.....+ ..++..+.+.|.| ||++||+.++. .+|+++..+.+|.+.++
T Consensus 176 LD~~~~~~l-~~~l~~l~~~g~t-iiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 176 LTNKEVDYL-FLIMNQLRKEGTA-IVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCHHHHHHH-HHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 999766666 4666777777887 99999998776 68999999999998765
No 193
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=180.57 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=106.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-------cccc---------------------cccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGL---------------------HILSSE 491 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q~G~---------------------~vpa~~ 491 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|...
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 45789999999 889999999999999999999997764321 0121 122100
Q ss_pred c--cccchHHHH-------------------------HhhcCchhhHhhhhhhhhHHhHHHHHHH-HhC---------CC
Q 003163 492 Y--AKVPWFDSV-------------------------FADIGDEQSLSQSLSTFSGHLKQIGNII-SQS---------TS 534 (843)
Q Consensus 492 ~--~~i~~~~~i-------------------------~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a---------~~ 534 (843)
. ....+.+++ +..++.........+++|+++++...++ +++ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 0 011112221 1122232333344567787776665554 455 49
Q ss_pred CcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 535 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 535 p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|++|||||||+|||+.....+. .++..+.+. |.+ ||++||+.+.. .+|++...+.+|.+...
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~t-viiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLG-VLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999997777775 455556554 787 99999998776 68999999999998754
No 194
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=192.57 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=109.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc--------cc--ccccccchHH-----------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LS--SEYAKVPWFD----------- 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v--------pa--~~~~~i~~~~----------- 499 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .|... +. .....+...+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 4689999999 899999999999999999999997764321 22110 00 0000011111
Q ss_pred ----------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 500 ----------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 500 ----------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
.++..++....+......+|+++++.. .+.+++.+|++|||||||+|||+.....+. .++..+.+.|.
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Ll-elL~el~~~G~ 194 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCL-DKMNEFKEQGK 194 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH-HHHHHHHhCCC
Confidence 123334555555666778888776655 445678999999999999999997777765 55566677788
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 569 LLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 569 t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
| ||++||+.++. .+|+++..+.+|.+...
T Consensus 195 T-IIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 195 T-IFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 7 99999998776 68999999999988654
No 195
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=9.3e-18 Score=170.24 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=106.5
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----ccc---------------ccccccccccch-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SGL---------------HILSSEYAKVPW- 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G~---------------~vpa~~~~~i~~- 497 (843)
.++.+.++++|+ .+|++++|+||||+|||||||.+.+-..... .|. ..|......++|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 467899999999 9999999999999999999999954211000 000 011100001111
Q ss_pred ------------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH---HHhC----CCCcEEEEecCCCC
Q 003163 498 ------------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI---ISQS----TSQSLVLLDEIGAG 546 (843)
Q Consensus 498 ------------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i---l~~a----~~p~LLLLDEP~sG 546 (843)
..+.++..+..........++||+.++...+ ++.. ..+.+|+||||||.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 1222333333333334455677655544333 3333 34469999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
||+...... ..+...|...|+. |+++-||.+++ .|||++..+.+|++.-++
T Consensus 172 LDi~HQ~~t-l~laR~la~~g~~-V~~VLHDLNLAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 172 LDIAHQHHT-LRLARQLAREGGA-VLAVLHDLNLAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred cchHHHHHH-HHHHHHHHhcCCc-EEEEEccchHHHHhhheeeeeeCCeEeecC
Confidence 999666655 4678888888886 99999999998 699999999999998654
No 196
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=8.8e-18 Score=173.13 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=98.9
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------cccccccc-cccchHHHH-----------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSV----------- 501 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~-~~i~~~~~i----------- 501 (843)
.++.+++|+ +.|++++|+||||+||||||++|+++... ..| .++|.... ......+++
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 689999999 89999999999999999999999775422 122 22332100 001111111
Q ss_pred ---HhhcCchhhH-----------hhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 003163 502 ---FADIGDEQSL-----------SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 566 (843)
Q Consensus 502 ---~~~ig~~q~i-----------~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~ 566 (843)
...++....+ ......+|+++++ +..+.+++.+|+++||||||+|||+.....+...++..+...
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 1111221111 1223567776655 455556789999999999999999976676765566555555
Q ss_pred CCeEEEEEccchhHHhhhccccceeee
Q 003163 567 GSLLTIATTHHGELKTLKYSNDFFENA 593 (843)
Q Consensus 567 g~t~vlitTHd~el~~~a~~~~~v~ng 593 (843)
|.+ ||++||+.+....++++..+.+|
T Consensus 178 ~~t-vi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 178 NKT-RILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CCE-EEEEeCCHHHHhhCCEEEEEeCC
Confidence 776 99999999888668777766655
No 197
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.74 E-value=1.4e-17 Score=176.46 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=101.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhccccccc-ccc--------cc--cccchH---------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHI-LSS--------EY--AKVPWF--------- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~~v-pa~--------~~--~~i~~~--------- 498 (843)
++.++++++|. ..|++++|+|||||||||||++|+++. +.+..|... ... .. ..+.+.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 35689999999 889999999999999999999998874 222223110 000 00 001100
Q ss_pred -H-H-----HH-------------------------hhcCchh-hHhhhh-hhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 499 -D-S-----VF-------------------------ADIGDEQ-SLSQSL-STFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 499 -~-~-----i~-------------------------~~ig~~q-~i~~~l-stfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
. . ++ ..++..+ ...... +.+|+++++. ..+.+++.+|++||||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 0 00 0001100 001111 2578776655 445567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh--hccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL--KYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~--a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+.+.| ||++||+.++... ++++..+.+|.+...
T Consensus 173 t~~LD~~~~~~l~-~~l~~l~~~~~t-iii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 173 DSGLDIDALKIVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred CccCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 9999997777664 566667777787 9999999888764 677788888888654
No 198
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.74 E-value=1.2e-17 Score=174.97 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=99.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc-cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY-AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~-~~i~~ 497 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .+++.... ....+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 45689999999 89999999999999999999999765321 111 11221000 00011
Q ss_pred HH-------------------HHHhhcCch-hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 498 FD-------------------SVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 498 ~~-------------------~i~~~ig~~-q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
.+ .++..++.. ........++|+++++ +..+.+++.+|+++||||||+|||+.....+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 223334442 2334455667776655 45556778999999999999999997766665
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHHhhhcccccee
Q 003163 557 MSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 557 ~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
.++..+.+ .|.+ ||++||+.++...|+++..+.
T Consensus 178 -~~l~~~~~~~~~t-vii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 178 -EIIHRYVREQNIA-VLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred -HHHHHHHHhcCCE-EEEEECChHHHHhCCEEEEEe
Confidence 45555544 5777 999999998877777776663
No 199
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.1e-17 Score=173.87 Aligned_cols=147 Identities=19% Similarity=0.128 Sum_probs=98.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------cccccccc--cccchHH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY--AKVPWFD 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------~~vpa~~~--~~i~~~~ 499 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... ..+...+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~-~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-CeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 45689999999 889999999999999999999997653211 11 12221000 0011111
Q ss_pred H------------------HHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 500 S------------------VFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 500 ~------------------i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
+ .+..++...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+ ..++
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l 180 (214)
T PRK13543 102 NLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRMI 180 (214)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 1 1222333333344455677766554 455567899999999999999999666655 5667
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003163 561 EAFAESGSLLTIATTHHGELK-TLKYSNDFF 590 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~el~-~~a~~~~~v 590 (843)
..+.+.|.+ +|++||+.+.. .++++...+
T Consensus 181 ~~~~~~~~t-iii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 181 SAHLRGGGA-ALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHhCCCE-EEEEecChhhhhhhcceEEEE
Confidence 666777887 99999998766 577766544
No 200
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=186.55 Aligned_cols=148 Identities=19% Similarity=0.110 Sum_probs=103.8
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------------cccccccc---ccch
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYA---KVPW 497 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------------~vpa~~~~---~i~~ 497 (843)
+++|+ ..|++++|+||||||||||||+|+++.... .|. +++. ... .+.+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q-~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ-DARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEccccccccccchhhCCEEEEcC-CcccCCCCcH
Confidence 78888 788999999999999999999997653221 111 1111 000 0011
Q ss_pred H---------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 498 F---------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 498 ~---------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
. ..++..++..+.+.....++|+++++.. .+.+++.+|+++||||||+|||+.....+. .++.
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~ 172 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLE 172 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHH
Confidence 1 1233444555555566677887766554 445678999999999999999997777765 4555
Q ss_pred HHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 562 AFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 562 ~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.+.+ .|.| +|++|||.+.. .+|+++..+.+|.+...
T Consensus 173 ~l~~~~g~t-ii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 173 RLAREINIP-ILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHhcCCe-EEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 5554 4787 99999998755 78999999999998654
No 201
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=9.4e-18 Score=173.14 Aligned_cols=141 Identities=19% Similarity=0.130 Sum_probs=96.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc--------------------ccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~--------------------~vpa~~~--~~i~~ 497 (843)
++.++.+++|+ ..|++++|+||||||||||+++|++..... .|. +++.... .....
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~-~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD-AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 45689999999 899999999999999999999997653211 111 1111000 00011
Q ss_pred H------------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHH
Q 003163 498 F------------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 558 (843)
Q Consensus 498 ~------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ 558 (843)
. ..++..+|.........+.+|+++++.. .+.+++.+|+++||||||+|+|+.....+. .
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~ 170 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE-A 170 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-H
Confidence 1 1223344554445556677887766554 445678999999999999999997777764 5
Q ss_pred HHHHHHhcCCeEEEEEccchhHHhhh
Q 003163 559 LLEAFAESGSLLTIATTHHGELKTLK 584 (843)
Q Consensus 559 lle~L~~~g~t~vlitTHd~el~~~a 584 (843)
++..+.+.+.| +|++||+.++...+
T Consensus 171 ~l~~~~~~~~t-iii~sh~~~~i~~~ 195 (204)
T PRK13538 171 LLAQHAEQGGM-VILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHHCCCE-EEEEecChhhhccC
Confidence 66666666777 99999998887433
No 202
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=1.1e-17 Score=166.02 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=107.8
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc---------ccccc-cccchHHHHHhhcCchhhHh
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------LSSEY-AKVPWFDSVFADIGDEQSLS 512 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v---------pa~~~-~~i~~~~~i~~~ig~~q~i~ 512 (843)
.+-.|++. +.|++++|+||+||||||||+.|+++....+....+ |+... +.+..-+++|+++++.+|+.
T Consensus 14 ~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 14 LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 45556666 788999999999999999999998876654422211 21111 11111234555555555443
Q ss_pred h-------------------------------hhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 513 Q-------------------------------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 513 ~-------------------------------~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
. -..++||+. +|++.+..++.+.+++|||||||.|||.-+.... +++
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv 172 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML-ALV 172 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH-HHH
Confidence 3 333556554 5556666778999999999999999997777765 444
Q ss_pred HHH-HhcCCeEEEEEccchhH-HhhhccccceeeeEEEEecc
Q 003163 561 EAF-AESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 561 e~L-~~~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~fd~~ 600 (843)
..+ .+++.| +++|||+.+- ..++++...+.+|.|.....
T Consensus 173 ~~l~~E~~~T-llmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 173 SQLCDERKMT-LLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHhhCCE-EEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 455 456787 9999999755 57999999999999988654
No 203
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=183.44 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=107.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------------------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------------ 484 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------------------ 484 (843)
..++.+++|+ ..|++++|+||||||||||+++|+++.... .|
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 4689999999 899999999999999999999997653211 11
Q ss_pred -cccccccc-cc--cchHHH---------------------HHhhcCch-hhHhhhhhhhhHHhHHH-HHHHHhCCCCcE
Q 003163 485 -LHILSSEY-AK--VPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSL 537 (843)
Q Consensus 485 -~~vpa~~~-~~--i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~~~l-~~il~~a~~p~L 537 (843)
.+++.... .. ..+.++ ++..++.. ........++|+++++. ..+.+++.+|++
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 01111000 00 011111 12223332 23344455678766554 445567899999
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 538 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 538 LLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|||||||+|||+.....+. .++..+.+.|.| ||++||+++.. .+|+++..+.+|.+..++
T Consensus 198 LLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~T-iiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMM-QLILDAKANNKT-VFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred EEEECCccCCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999997777765 566666667887 99999999865 799999999999998664
No 204
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=178.01 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=104.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.- . ...|. ++|. ..
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 96 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ-KP 96 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEec-CC
Confidence 35689999999 8999999999999999999999987531 1 11221 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCchh----hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~~q----~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP 543 (843)
..+ .+.+++. ..++..+ .+......+|+++++...+ .+++.+|+++|||||
T Consensus 97 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEP 176 (253)
T PRK14242 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176 (253)
T ss_pred CCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 1112111 1112111 1223345678776655544 567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 177 t~~LD~~~~~~l~-~~l~~~~~-~~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 177 ASALDPIATQKIE-ELIHELKA-RYT-IIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred cccCCHHHHHHHH-HHHHHHhc-CCe-EEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999997777665 56666654 676 99999998776 68999999999998654
No 205
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.5e-18 Score=175.38 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=104.6
Q ss_pred cCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----------------------ccccccc-------
Q 003163 439 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------------KSGLHIL------- 488 (843)
Q Consensus 439 ~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----------------------q~G~~vp------- 488 (843)
.+++.++.+++.. +.|+-++|+|||||||||||+++.+-.... ..|+.-+
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 3678999999999 888889999999999999999995422111 0111000
Q ss_pred ccc----------ccccch------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCC
Q 003163 489 SSE----------YAKVPW------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 489 a~~----------~~~i~~------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~s 545 (843)
... ...+++ ...++..+|........+.++|-+.+++..| .+++.+|.|||||||++
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 000 000111 1123444555555566677788666666555 46789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|......+...+.+.....+.+.+|+|||+.+.. ....+...+.+|.+...
T Consensus 201 GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~ 254 (257)
T COG1119 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQ 254 (257)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeec
Confidence 999977777765444433343444599999997766 45555666666666543
No 206
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=5.6e-17 Score=194.28 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------cccccc----ccccchH------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE----YAKVPWF------ 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~----~~~i~~~------ 498 (843)
+++.++++++|+ ..|++++|+||||||||||||+|++..... .|. +++... ...+.++
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd-~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD-GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 456799999999 889999999999999999999997753221 121 111100 0011110
Q ss_pred ---------------------------------------HHHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcE
Q 003163 499 ---------------------------------------DSVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSL 537 (843)
Q Consensus 499 ---------------------------------------~~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~L 537 (843)
..++..+|.. ......+++||+++++...+ .+++.+|+|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~l 170 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL 170 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCE
Confidence 0112233332 23455667889887666555 467899999
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 538 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 538 LLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
|||||||+|||+.....+ .+.|.+.+.+ ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 LLLDEPtn~LD~~~~~~L----~~~L~~~~~t-viivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 171 LLLDEPTNHLDLDAVIWL----EKWLKSYQGT-LILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred EEEcCCCCcCCHHHHHHH----HHHHHhCCCe-EEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999655443 3344455676 99999999887 588888888888764
No 207
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.73 E-value=8.5e-18 Score=164.59 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=89.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 520 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 520 (843)
..+..+++|. ..|++++|+||||+|||||+++|+++... ..|...-. ....+.+..+ +|+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~-~~~~i~~~~~-----------------lS~ 73 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG-STVKIGYFEQ-----------------LSG 73 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC-CeEEEEEEcc-----------------CCH
Confidence 4688999999 89999999999999999999999654322 12211111 1111222111 666
Q ss_pred HhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003163 521 HLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 593 (843)
Q Consensus 521 ~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng 593 (843)
+++ ++..+.+++.+|+++|||||++|+|+.....+. .++..+ +.+ +|++||+.+.. .+++++..+.+|
T Consensus 74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~---~~t-il~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY---PGT-VILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc---CCE-EEEEECCHHHHHHhCCEEEEEeCC
Confidence 554 455556778999999999999999996666654 444443 466 99999998877 578888777665
No 208
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.4e-17 Score=175.16 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=102.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~--i~~ 497 (843)
+.++.+++|+ ..|++++|+|||||||||||++|+++.... .|. +++. .... ..+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~v~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS-SGSILIDGQDIREVTLDSLRRAIGVVPQ-DTVLFNDTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCEEEECCEEhhhCCHHHHHhhEEEECC-CChhhcchH
Confidence 4589999999 889999999999999999999997764321 121 1111 0000 011
Q ss_pred HHHHH---------------hhcCchhh-----------HhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSVF---------------ADIGDEQS-----------LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i~---------------~~ig~~q~-----------i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++. ...+..+. +......+|+++++ +..+.+++.+|+++||||||+|||+.
T Consensus 92 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 92 GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11110 00111111 11123467766654 55556779999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+ |.+ ||++||+.+....|+++..+.+|.+..+
T Consensus 172 ~~~~l~-~~l~~~~~-~~t-iii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 172 TEREIQ-AALRDVSK-GRT-TIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHH-HHHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 777665 55566666 777 9999999988877999999999998654
No 209
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=178.17 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=104.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. +++....
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 34689999999 8999999999999999999999987642 1 11221 1111000
Q ss_pred -cccchHHHH----------------------HhhcCc----hhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~ 544 (843)
......+++ +..++. ...+.....++|+++++ +..+.+++.+|++|||||||
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 000111111 111121 11123344567776655 45555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|++..+.
T Consensus 185 ~~LD~~~~~~l~-~~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 185 SALDPISTGRIE-ELITELKQ-DYT-VVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999996666664 56666654 666 99999998776 689999999999987653
No 210
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=1.6e-17 Score=176.83 Aligned_cols=146 Identities=20% Similarity=0.145 Sum_probs=98.5
Q ss_pred ceeeEEEe-c-----CCeEEEEEccCCCCchhhhhcccchhhhcccc---------cccccccc--cccch---------
Q 003163 444 VPIDIFIA-R-----KTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEY--AKVPW--------- 497 (843)
Q Consensus 444 V~~disL~-~-----~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------~~vpa~~~--~~i~~--------- 497 (843)
...+|+|+ . .|++++|+||||||||||||+|+++.... .| .++|.... ....+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~-~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD-EGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CCeEEECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 55667666 2 68999999999999999999997654221 12 12222110 00111
Q ss_pred --------HHHHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cC
Q 003163 498 --------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SG 567 (843)
Q Consensus 498 --------~~~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g 567 (843)
...++..++....+....+.+|+++++ +..+.+++.+|+++||||||+|||+.....+. .++..+.+ .+
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~~~ 166 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS-KVIRRFAENNE 166 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcC
Confidence 112334455555556667788876655 45556778999999999999999997777775 45555554 57
Q ss_pred CeEEEEEccchhHHh-hhccccceee
Q 003163 568 SLLTIATTHHGELKT-LKYSNDFFEN 592 (843)
Q Consensus 568 ~t~vlitTHd~el~~-~a~~~~~v~n 592 (843)
.+ ||++||+.++.. +|+++..+..
T Consensus 167 ~t-iiivsHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 167 KT-AFVVEHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEcC
Confidence 77 999999988775 7777766543
No 211
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=2e-17 Score=170.45 Aligned_cols=157 Identities=21% Similarity=0.218 Sum_probs=110.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc---------cccccc-----cccchHHHHHhh
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------ILSSEY-----AKVPWFDSVFAD 504 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~---------vpa~~~-----~~i~~~~~i~~~ 504 (843)
+...++.+++|+ ..|++++|+||||+|||||||+|.++.-.. .|.. .|+... +.+|.-.++|..
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 456799999999 999999999999999999999997654321 1110 111000 011111123333
Q ss_pred cCchhh-------------------------------HhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 505 IGDEQS-------------------------------LSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 505 ig~~q~-------------------------------i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
+++++| ..+.-.++||+.+++..| .+++.+|+|||||||+.||-|.-.
T Consensus 93 LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv 172 (237)
T COG0410 93 LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV 172 (237)
T ss_pred CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHH
Confidence 333322 223334667766665554 567899999999999999999888
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..+. .++..+++. |.| |++|.++..++ .++|+...+.+|.+.+..
T Consensus 173 ~~I~-~~i~~l~~~~g~t-IlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 173 EEIF-EAIKELRKEGGMT-ILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHH-HHHHHHHHcCCcE-EEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 8776 566677765 666 99999998888 699999999999999875
No 212
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=179.01 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=104.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh-h---ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-M---AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~-~---~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.. . +..|. +++. ..
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 111 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ-KP 111 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec-CC
Confidence 45789999999 8999999999999999999999977531 1 11221 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
..+ ..++++. ..++.. .........+|+++++. ..+.+++.+|+++|||||
T Consensus 112 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 191 (268)
T PRK14248 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEP 191 (268)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 000 1111111 111110 11223445678776555 445567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..+.
T Consensus 192 t~~LD~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 192 ASALDPISNAKIE-ELITELKE-EYS-IIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred CcccCHHHHHHHH-HHHHHHhc-CCE-EEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997777764 56666654 566 99999998765 689999999999987653
No 213
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.73 E-value=1.4e-17 Score=176.97 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=105.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhcccccc----------------------cccccccc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLH----------------------ILSSEYAK-- 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~~----------------------vpa~~~~~-- 494 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++. +....|.. ++. ....
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q-~~~~~~ 97 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQ-YPIEIP 97 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEec-cccccc
Confidence 35689999999 889999999999999999999998752 12222311 111 0000
Q ss_pred -cchHH----------------------------HHHhhcCchh-hHhhhhh-hhhHHhHHHH-HHHHhCCCCcEEEEec
Q 003163 495 -VPWFD----------------------------SVFADIGDEQ-SLSQSLS-TFSGHLKQIG-NIISQSTSQSLVLLDE 542 (843)
Q Consensus 495 -i~~~~----------------------------~i~~~ig~~q-~i~~~ls-tfS~~~~~l~-~il~~a~~p~LLLLDE 542 (843)
..... .++..++..+ .+...+. .+|+++++.. .+.+++.+|+++||||
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 177 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE 177 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 00001 1112222221 1223333 4787765554 4556789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEec
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 599 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~-a~~~~~v~ng~v~fd~ 599 (843)
||+|||+.....+. .++..+.+.|.| ||++||+.++.. + ++++..+.+|.+..++
T Consensus 178 Pt~~LD~~~~~~l~-~~l~~~~~~g~t-ii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 178 TDSGLDIDALKIIA-EGINKLMTSENS-IILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred CcccCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999997777765 566666666787 999999998875 4 7888888999987654
No 214
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.4e-17 Score=178.27 Aligned_cols=154 Identities=13% Similarity=0.072 Sum_probs=106.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc---cccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~---~~i~ 496 (843)
..++.+++|+ ..|++++|+||||+|||||+++|+++.... .| .+++.... ....
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF-EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 3589999999 889999999999999999999997653211 11 12222100 0111
Q ss_pred hHHHH---------------------HhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 497 WFDSV---------------------FADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 497 ~~~~i---------------------~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
+.+++ +..++...........+|+++++...+ .+++.+|+++||||||+|||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~ 178 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11222 122233333334445678777655544 56789999999999999999977777
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 555 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 555 l~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+. .++..+.+. |.| ||++||+.+....|+++..+.+|.+..+
T Consensus 179 l~-~~l~~l~~~~g~t-iil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 179 IM-RVIHEIKEKYQLT-VLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred HH-HHHHHHHHhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 75 566666654 887 9999999988878999999999998654
No 215
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-17 Score=182.77 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=107.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh---cccc-------------------------cccccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~---~q~G-------------------------~~vpa~~~ 492 (843)
..++++++|+ ..|++++|+||||||||||+++|.++.-. ...| .++|....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4689999999 99999999999999999999999765421 0111 12222110
Q ss_pred c----ccchHH----------------------HHHhhcCch---hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEec
Q 003163 493 A----KVPWFD----------------------SVFADIGDE---QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDE 542 (843)
Q Consensus 493 ~----~i~~~~----------------------~i~~~ig~~---q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDE 542 (843)
. .+.+.+ ..+..+|.. ..+......+|++|++...| .+++.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 000001 122333332 12344556788887665555 56789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||+|||+.....+. .++..+.+ .|.+ +|++|||..+. .+++++..+.+|.+...
T Consensus 180 Pts~LD~~~~~~il-~lL~~l~~~~g~t-il~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 180 PTTALDVTIQAQII-ELLLELQQKENMA-LVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999997777665 56666665 5887 99999999877 68999999999998644
No 216
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=1.6e-17 Score=173.00 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=103.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~~ 497 (843)
+.++++++|+ ..|++++|+|||||||||||++|+++.... .| .++|. ....+ .+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~l~~~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS-SGSILIDGVDISKIGLHDLRSRISIIPQ-DPVLFSGTI 94 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhHhCCHHHHhhhEEEECC-CCccccchH
Confidence 4689999999 889999999999999999999997653211 12 11121 00000 01
Q ss_pred HHH--------------HHhhcCchhhHh-----------hhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 498 FDS--------------VFADIGDEQSLS-----------QSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 498 ~~~--------------i~~~ig~~q~i~-----------~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.++ .+..++..+.+. .....+|+++++. ..+.+++.+|+++||||||+|||+..
T Consensus 95 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 95 RSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 111 122233333222 3456677766554 45556789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ +.+ ||++||+.+....++++..+.+|.+...
T Consensus 175 ~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 175 DALIQ-KTIREAFK-DCT-VLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 77664 55555554 566 9999999988877888888999888643
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.7e-17 Score=173.78 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=101.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i--~~ 497 (843)
+.+..+++|+ ..|++++|+||||+||||||++|+++... ..|. |+|. ....+ .+
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 93 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTI 93 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEecC-CchhhhhHH
Confidence 4589999999 88999999999999999999999765322 1221 1111 00000 01
Q ss_pred HHHHH---------------hhcCchhhH-----------hhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i~---------------~~ig~~q~i-----------~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++. ..++....+ ......+|+++++ +..+.+++.+|+++||||||+|||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 94 MENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11110 011111111 1123567766655 45555678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+. .+.+ ||++||+.+....|+++..+.+|.+..+
T Consensus 174 ~~~~l~-~~l~~~~-~~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 174 TEKLIQ-EALEKLM-KGRT-SIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHH-HHHHHhc-CCCE-EEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 777765 5555665 4776 9999999988878888899999988754
No 218
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=167.59 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=117.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc-----ccccccc-----------------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHILSS----------------------- 490 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~-----G~~vpa~----------------------- 490 (843)
+++.|..++++. +.|.++.|+||||+||||||-+++.+.-+... |.-+...
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT 91 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT 91 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence 578899999999 99999999999999999999998644322210 0000000
Q ss_pred -----cccccc------------hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHH-hCCCCcEEEEecCCCCCChhhH
Q 003163 491 -----EYAKVP------------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 491 -----~~~~i~------------~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~-~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
...++| ..++.+..+..++--.+.+..+||+.++.+.++. ++++.+++|||||.++||....
T Consensus 92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs 171 (252)
T COG4604 92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171 (252)
T ss_pred HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence 001111 1223344455555666778889999988888764 5899999999999999999888
Q ss_pred HHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..+. .+++.+. +.|.| |++|-||.+++ .|+|.++.+.||.+...+
T Consensus 172 v~iM-k~Lrrla~el~Kt-iviVlHDINfAS~YsD~IVAlK~G~vv~~G 218 (252)
T COG4604 172 VQIM-KILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQG 218 (252)
T ss_pred HHHH-HHHHHHHHHhCCe-EEEEEecccHHHhhhhheeeecCCEEEecC
Confidence 8775 5666665 45887 99999999999 599999999999997643
No 219
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-17 Score=194.91 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=109.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------ccccccc-----cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSE-----YA 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~-----~~ 493 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++......| .++|... ..
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP 354 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence 4688999999 899999999999999999999998764311111 1122110 00
Q ss_pred ccchHH--------------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCC
Q 003163 494 KVPWFD--------------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 494 ~i~~~~--------------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~s 545 (843)
.+...+ .++..++.. ........++|+++++...+ .+++.+|++|||||||+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~ 434 (506)
T PRK13549 355 VMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTR 434 (506)
T ss_pred CCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 011111 122233332 23344556788877665555 46788999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|||+.....+ ..++..+.+.|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 435 ~LD~~~~~~l-~~~l~~l~~~g~t-vi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 435 GIDVGAKYEI-YKLINQLVQQGVA-IIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred CcCHhHHHHH-HHHHHHHHHCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999777766 4667777777887 99999998766 689999999999987653
No 220
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.7e-17 Score=176.41 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=103.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh--hhc--cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--MMA--KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~--~~~--q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++. ... ..|. |+|....
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 35689999999 889999999999999999999997642 111 1221 1111000
Q ss_pred c-ccchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 A-KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~-~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. ...+.+++ +..++.. .........+|+++++. ..+.+++.+|+++||||||
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 00111111 1112211 11223334677766554 5555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 175 SALDPISTAKVE-ELIHELKK-DYT-IVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999997777664 56666654 676 99999998776 78999999999998654
No 221
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=2.5e-17 Score=182.48 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=107.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc----
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~---- 492 (843)
..++++++|+ ..|++++|+||||||||||+|+|.++... ..| .+++....
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 4689999999 89999999999999999999999765321 111 12221100
Q ss_pred cccchHHHH-----------------------HhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 493 AKVPWFDSV-----------------------FADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 493 ~~i~~~~~i-----------------------~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
....+.+++ +..++.. +........+|++|++...| .+++.+|+|||+||||+||
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 011111221 2223331 22344456788877665554 5678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 548 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+.....+. .++..+.+ .|.+ +|++|||++++ .+|+++..+.+|.+...
T Consensus 193 D~~~~~~i~-~lL~~l~~~~~~t-il~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 193 DVSIQAQVV-NLLQQLQREMGLS-LIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred CHHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 997777765 56666665 4887 99999999888 58999999999988654
No 222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=6.5e-18 Score=171.15 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=88.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhh
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 519 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 519 (843)
++.+..++ +. ..|++++|+||||||||||||+|+++... ..|..... +..+.+..+ .. .+|
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~--g~~i~~~~q---------~~-----~LS 73 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWD--GITPVYKPQ---------YI-----DLS 73 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEEC--CEEEEEEcc---------cC-----CCC
Confidence 44556654 56 78899999999999999999999654332 22322111 111221111 00 177
Q ss_pred HHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC-CeEEEEEccchhHHh-hhccccceeee
Q 003163 520 GHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKT-LKYSNDFFENA 593 (843)
Q Consensus 520 ~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g-~t~vlitTHd~el~~-~a~~~~~v~ng 593 (843)
+++++. ..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.+ .+ +|++||+.++.. +|+++..+.++
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR-AIRRLSEEGKKT-ALVVEHDLAVLDYLSDRIHVFEGE 148 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHHHcCCCE-EEEEECCHHHHHHhCCEEEEEcCC
Confidence 766555 44456789999999999999999977777754 455555554 76 999999988775 77777666543
No 223
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.6e-17 Score=171.82 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=97.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------cccccccc--cccchHH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY--AKVPWFD 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------~~vpa~~~--~~i~~~~ 499 (843)
+..++++++|+ .+|++++|+||||+|||||+++|+++.... .| .+++.... ......+
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA-AGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 45689999999 899999999999999999999997653211 11 11211000 0011111
Q ss_pred -----------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 500 -----------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 500 -----------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
.++..+|...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 171 (207)
T PRK13539 93 NLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA-ELIR 171 (207)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 12233344433344556788766554 4555678999999999999999997777775 5666
Q ss_pred HHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 562 AFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 562 ~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
.+.+.|.+ +|++||+.+.... +++..+
T Consensus 172 ~~~~~~~t-iii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 172 AHLAQGGI-VIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred HHHHCCCE-EEEEeCCchhhcc-CcEEee
Confidence 66666887 9999999887754 444333
No 224
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1.8e-17 Score=172.62 Aligned_cols=149 Identities=12% Similarity=0.021 Sum_probs=99.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------------cccccccc--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYA-- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------------~vpa~~~~-- 493 (843)
..++.+++|+ ..|++++|+|||||||||||++|+++... ..|. +++. ...
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q-~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQ-KPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEEEEcC-CCccc
Confidence 5689999999 88999999999999999999999765321 1121 1111 000
Q ss_pred ccchHHHH--------------HhhcCchhhH-----------hhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCC
Q 003163 494 KVPWFDSV--------------FADIGDEQSL-----------SQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 494 ~i~~~~~i--------------~~~ig~~q~i-----------~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGl 547 (843)
.....+++ ...++....+ ......+|+++++.. .+.+++.+|+++||||||+||
T Consensus 92 ~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 171 (218)
T cd03290 92 NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccc
Confidence 00111111 1111111111 123456777665554 445678999999999999999
Q ss_pred ChhhHHHHHHH-HHHHHHhcCCeEEEEEccchhHHhhhccccceeee
Q 003163 548 NPLEGTALGMS-LLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 593 (843)
Q Consensus 548 Dp~e~~al~~~-lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng 593 (843)
|+.....+... +++.+.+.|.| +|++||+.+....++++..+.+|
T Consensus 172 D~~~~~~l~~~~ll~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 172 DIHLSDHLMQEGILKFLQDDKRT-LVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCE-EEEEeCChHHHhhCCEEEEecCC
Confidence 99777777653 67777777887 99999999887778777666655
No 225
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=175.47 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc---------------------ccccccc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL---------------------HILSSEY-- 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~---------------------~vpa~~~-- 492 (843)
+..++++++|+ ..|++++|+|||||||||||++|+++... ...|. ++|....
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 35689999999 89999999999999999999999876431 11221 1111000
Q ss_pred cccchHHHH-----------------------HhhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 AKVPWFDSV-----------------------FADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~~i~~~~~i-----------------------~~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
....+.+++ +..++.. .........+|+++++. ..+.+++.+|+++||||||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011112222 1112221 12233446678776555 4455678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|+|+.....+. .++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 175 ANLDPENTAKIE-SLFLELKK-DMT-IVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 999997777765 55556654 676 99999998876 68999999999998765
No 226
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.9e-17 Score=175.70 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--hccccc---------------------cccccccc-cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--MAKSGL---------------------HILSSEYA-KV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~~q~G~---------------------~vpa~~~~-~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||+++|+++.- ....|. ++|..... ..
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 45689999999 8899999999999999999999987631 111221 12211000 00
Q ss_pred chHHH-----------------------HHhhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCC
Q 003163 496 PWFDS-----------------------VFADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 496 ~~~~~-----------------------i~~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGl 547 (843)
...++ ++..++.. +........+|+++++ +..+.+++.+|+++||||||+|+
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 11111 12222221 1122334567776655 45555678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+.....+. .++..+.+ +.| +|++||+.+.. .+++++..+.+|++...
T Consensus 174 D~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 174 DPISSGVIE-ELLKELSH-NLS-MIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CHHHHHHHH-HHHHHHhC-CCE-EEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 997776664 55555654 776 99999998865 68999999999998754
No 227
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.73 E-value=2.6e-17 Score=177.17 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=106.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------------------------cccccccc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------HILSSEYA-- 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------------------------~vpa~~~~-- 493 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..|. +++.....
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 35789999999 88999999999999999999999765321 1111 11210000
Q ss_pred --ccchH----------------------HHHHhhcCch-hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCC
Q 003163 494 --KVPWF----------------------DSVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 494 --~i~~~----------------------~~i~~~ig~~-q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGl 547 (843)
..... ..++..++.. .........+|+++++ +..+.+++.+|++|||||||+||
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L 182 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 00001 1122223332 2334455567766554 55556778999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+.....+. .+++.+.+ .+.| +|++||+.+.. .+|+++..+.+|.+..+.
T Consensus 183 D~~~~~~~~-~~l~~~~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 183 DLVLQAGVI-RLLKKLQQQFGTA-CLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred CHHHHHHHH-HHHHHHHHHcCcE-EEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 996666664 55555655 4776 99999998877 589999999999987653
No 228
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.5e-17 Score=174.72 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=101.8
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccc--cchH
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPWF 498 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~--i~~~ 498 (843)
.++.+++|+ ..|++++|+|||||||||||++|+++.... .|. +++. .... ..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC-CCEEEECCEEhhhCCHHHHHhhEEEeCC-CCeeccccHH
Confidence 688999999 889999999999999999999997664221 121 1111 0000 0111
Q ss_pred HHHHh---------------hcCchhh-----------HhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSVFA---------------DIGDEQS-----------LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i~~---------------~ig~~q~-----------i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++.. ..+..+. .......+|+++++ +..+.+++.+|+++||||||+|||+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11110 0011111 11223457766554 555567789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ +.+ ||++||+.+....|+++..+.+|.+..+
T Consensus 174 ~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 174 ERLVQ-AALERLMK-NRT-TFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 77765 56666654 776 9999999988877999999999988644
No 229
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=7.7e-17 Score=187.43 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=98.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------cccccc--ccccchHH-------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE--YAKVPWFD------- 499 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~--~~~i~~~~------- 499 (843)
+++.++.++++. .+|+.++|+|+||+|||||||+|++..... .|. +++... .....+++
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~-~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC-CCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhH
Confidence 578899999999 788889999999999999999997643221 111 111100 00000111
Q ss_pred --------------------------------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCC
Q 003163 500 --------------------------------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTS 534 (843)
Q Consensus 500 --------------------------------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~ 534 (843)
.++..+|..+. ...++++||+.+.. ..+.++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~ 171 (530)
T COG0488 93 ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEE 171 (530)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcC
Confidence 12223333333 56778899876654 445567899
Q ss_pred CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003163 535 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 594 (843)
Q Consensus 535 p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~ 594 (843)
|++|||||||++||. ++... +.++|.++.+| +|+||||.+|. ..|.++..+.+|.
T Consensus 172 pDlLLLDEPTNHLD~-~~i~W---Le~~L~~~~gt-viiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 172 PDLLLLDEPTNHLDL-ESIEW---LEDYLKRYPGT-VIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred CCEEEEcCCCcccCH-HHHHH---HHHHHHhCCCc-EEEEeCCHHHHHHHhhheEEecCCc
Confidence 999999999999998 43332 45566666556 99999999998 4676666666553
No 230
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.1e-17 Score=176.44 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... +..|. +++....
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 45789999999 89999999999999999999999876432 12221 1111000
Q ss_pred c-ccchHHHH-----------------------HhhcCchh----hHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 A-KVPWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~-~i~~~~~i-----------------------~~~ig~~q----~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
. ....++++ +..++... .+.....++|+++++ +..+.+++.+|++||||||
T Consensus 111 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 190 (267)
T PRK14235 111 PFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190 (267)
T ss_pred CCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 00111111 11122211 122334567776655 4555567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++....
T Consensus 191 t~~LD~~~~~~l~-~~L~~l~~-~~t-iiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 191 CSALDPIATAKVE-ELIDELRQ-NYT-IVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred CcCCCHHHHHHHH-HHHHHHhc-CCe-EEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999997777664 56666655 666 99999998877 688999999999986543
No 231
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1.4e-17 Score=194.20 Aligned_cols=156 Identities=16% Similarity=0.092 Sum_probs=108.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------ccccccc--ccc-
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV- 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~--~~i- 495 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++......|. ++|.... ..+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4688999999 8999999999999999999999977643211111 1111000 000
Q ss_pred --ch--------------------------HHHHHhhcCchh-hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCC
Q 003163 496 --PW--------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 496 --~~--------------------------~~~i~~~ig~~q-~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~s 545 (843)
.. +..++..++... .....+.++|+++++...+ .+++.+|++|||||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 00 011223333321 2344556788877665555 46688999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|||+.....+ ..++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 433 ~LD~~~~~~l-~~~l~~l~~~g~t-viivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 433 GVDVGAKYEI-YKLINQLAQEGVA-IIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred CcCHhHHHHH-HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999666666 4677777777887 99999998766 689999999999987654
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=175.52 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=104.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||+|+|+++.. . +..|. ++|. ..
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 95 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ-KP 95 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEec-Cc
Confidence 45689999999 8899999999999999999999987642 1 11221 1221 10
Q ss_pred ccc--chHHHH-----------------------HhhcCchh----hHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEec
Q 003163 493 AKV--PWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDE 542 (843)
Q Consensus 493 ~~i--~~~~~i-----------------------~~~ig~~q----~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDE 542 (843)
..+ ...+++ +..++... .+......+|+++++. ..+.+++.+|+++||||
T Consensus 96 ~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred ccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000 111111 12222211 1223345677666554 45556789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 176 Pt~~LD~~~~~~l~-~~l~~~~~-~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 176 PCSALDPVATNVIE-NLIQELKK-NFT-IIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred CCccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999997666664 56666654 776 99999998876 68999999999998764
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.73 E-value=1.3e-17 Score=174.40 Aligned_cols=148 Identities=15% Similarity=0.163 Sum_probs=99.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~--i~~ 497 (843)
..++.+++|. ..|++++|+||||+|||||+++|+++... ..|. +++. .... ..+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~l~~~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYEHKYLHSKVSLVGQ-EPVLFARSL 104 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcCHHHHHhhEEEEec-ccHHHhhhH
Confidence 3689999999 89999999999999999999999765321 1121 1111 0000 000
Q ss_pred HHHH------------------------Hhhc--CchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSV------------------------FADI--GDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i------------------------~~~i--g~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++ +..+ |....+......+|+++++ +..+.+++.+|+++||||||+|||+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1111 1111 2222233344567776655 45555678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 594 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~ 594 (843)
....+. .++..+.+ +.| +|++||+.++...|+++..+.+|.
T Consensus 185 ~~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 185 SEQQVQ-QALYDWPE-RRT-VLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred HHHHHH-HHHHHHcC-CCE-EEEEECCHHHHHhCCEEEEecCCc
Confidence 777765 45555554 566 999999998887788887777764
No 234
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.9e-17 Score=192.61 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=108.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------cccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 45689999999 899999999999999999999997653211 11 12221000 001
Q ss_pred chHHH------------------------HHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 496 PWFDS------------------------VFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 496 ~~~~~------------------------i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+.++ ++..++..........++|+++++...+ .+++.+|++|||||||+|||+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 11111 1222333333344566788877665555 5678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+..+
T Consensus 169 ~~~~l~-~~l~~l~~~g~t-vii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 169 EVNHLF-TIIRKLKERGCG-IVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 777664 566677777887 99999998776 68999999999998754
No 235
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.8e-17 Score=175.19 Aligned_cols=156 Identities=19% Similarity=0.271 Sum_probs=104.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 45689999999 899999999999999999999997764321 1121 1111000
Q ss_pred c-ccchHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCC
Q 003163 493 A-KVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~-~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~ 544 (843)
. ...+.+++. ..++. ........+.+|+++++.. .+.+++.+|++|||||||
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 011122221 01111 1112233456777665554 445678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|.+..+.
T Consensus 179 ~~LD~~~~~~l~-~~l~~~~~-~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 179 SALDPISTGKIE-ELIINLKE-SYT-IIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred cccCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999997777765 56666654 676 99999998876 689999999999987543
No 236
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.5e-17 Score=181.33 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=106.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh---cccc-------------------------cccccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~---~q~G-------------------------~~vpa~~~ 492 (843)
..++++++|+ ..|++++|+||||||||||+++|.++.-. ...| .+++....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 4689999999 89999999999999999999999766421 0111 12221110
Q ss_pred c----ccchHHH---------------------------HHhhcCchh---hHhhhhhhhhHHhHHHHH-HHHhCCCCcE
Q 003163 493 A----KVPWFDS---------------------------VFADIGDEQ---SLSQSLSTFSGHLKQIGN-IISQSTSQSL 537 (843)
Q Consensus 493 ~----~i~~~~~---------------------------i~~~ig~~q---~i~~~lstfS~~~~~l~~-il~~a~~p~L 537 (843)
. ...+.++ ++..+|..+ ........+|+++++... +.+++.+|+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 0 0001111 122223321 123344578887766554 4567899999
Q ss_pred EEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 538 VLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 538 LLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||||||+|||+.....+. .++..+.+ .|.| +|++|||.++. .+|+++..|.+|.+...
T Consensus 180 lilDEPts~LD~~~~~~i~-~lL~~l~~~~g~t-ii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTT-ILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999997777765 56666666 4887 99999999888 68999999999998654
No 237
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.2e-17 Score=170.15 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=109.1
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----ccccccc----------------cccccc----c
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SGLHILS----------------SEYAKV----P 496 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G~~vpa----------------~~~~~i----~ 496 (843)
.++++|+|+ ..|++++|+||+|||||||.++|+++.-..+ .|..++. ...+.+ +
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 599999999 8999999999999999999999976643322 1111111 000111 0
Q ss_pred h-------------------HHHHHhhcCchhhH-hhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 497 W-------------------FDSVFADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 497 ~-------------------~~~i~~~ig~~q~i-~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
+ ..+++..+|...+. ......|||+. +|++.+.+++.+|++||||||||+||+...+.+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 0 12234455554433 33445688765 556666678899999999999999999555555
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..++ +++.| +|++|||..+. .+|+++..|.||++....
T Consensus 181 -lnlL~~l~~~~~lt-~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 181 -LNLLLELKKERGLT-YLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred -HHHHHHHHHhcCce-EEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 55666665 45776 99999999888 589999999999998654
No 238
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.8e-17 Score=174.99 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=103.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||+||||||++|+++.... ..|. ++|....
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 45689999999 889999999999999999999998764321 1221 1111000
Q ss_pred --cccchHHHHH-----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEec
Q 003163 493 --AKVPWFDSVF-----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDE 542 (843)
Q Consensus 493 --~~i~~~~~i~-----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDE 542 (843)
....+.+++. ..++.. .........+|+++++. ..+.+++.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0011111111 111211 11223345677666554 45556789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||+|||+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 176 P~~~LD~~~~~~l~-~~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 176 PTANIDPVGTAKIE-ELLFELKK-EYT-IVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred CCccCCHHHHHHHH-HHHHHHhh-CCE-EEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999997666665 55556654 576 99999998875 68999999999998754
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4e-17 Score=177.36 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=104.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++.. . ...|. +++. ..
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 129 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ-KP 129 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECC-CC
Confidence 35689999999 8999999999999999999999987531 1 12221 1111 00
Q ss_pred ccc--chHHHH----------------------HhhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSV----------------------FADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
..+ .+.+++ +..++. .+........+|+++++. ..+.+++.+|++||||||
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 209 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP 209 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 111111 111111 112233446677766554 455577899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.. +.+ ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 210 t~gLD~~~~~~l~-~~L~~~~~-~~t-vIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 210 TSALDPKATAKIE-DLIQELRG-SYT-IMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997766665 55666654 566 99999998876 689999999999987653
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.8e-17 Score=175.71 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=104.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... + ..|. ++|....
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 45689999999 88999999999999999999999876421 0 1221 1111000
Q ss_pred c-ccchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 A-KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~-~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. ....++++ +..++.. ..+......+|+++++. ..+.+++.+|+++||||||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 00111111 1112221 11223345677766555 4445678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+..++
T Consensus 184 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 184 SALDPVSTRKIE-ELILKLKE-KYT-IVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999997766664 56666665 666 99999998775 689999999999987653
No 241
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.4e-17 Score=171.89 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=105.2
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-------------------ccccccccc--ccchHH--
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFD-- 499 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-------------------~~vpa~~~~--~i~~~~-- 499 (843)
++.+++|+ .+|++++|+||||+||||||++|+++.... .| .+++..... .....+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~-~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 78999999 889999999999999999999997653211 11 112210000 001111
Q ss_pred -------------------HHHhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 500 -------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 500 -------------------~i~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
..+..++....+......+|+++++ +..+.+++.+|+++||||||+|+|+.....+ ..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~ 171 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REE 171 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHH
Confidence 1223344444445555678876654 4555677899999999999999999666666 456
Q ss_pred HHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 560 LEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 560 le~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+..+.. .|.| +|++||+.+.. .+++++..+.+|.+...
T Consensus 172 l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 172 LKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred HHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 666655 4887 99999998875 68999999999998754
No 242
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=3.8e-17 Score=180.82 Aligned_cols=154 Identities=12% Similarity=0.084 Sum_probs=107.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------ccccccccc---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~~--- 493 (843)
..++++++|+ ..|++++|+||||||||||+++|+++... ..| .+++.....
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 4689999999 89999999999999999999999765321 111 122211000
Q ss_pred -ccch----------------------HHHHHhhcCch-hhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCC
Q 003163 494 -KVPW----------------------FDSVFADIGDE-QSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 494 -~i~~----------------------~~~i~~~ig~~-q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlD 548 (843)
.+.+ ...++..+|.. .........+|+++++... +.+++.+|+|||+||||+|||
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 0000 01123333432 2334455678887765554 456789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+.....+. .++..+.+ .|.+ +|++|||..+. .+|+++..+.+|.+...
T Consensus 187 ~~~~~~i~-~lL~~l~~~~g~t-il~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 187 VSVQAQVL-NLMMDLQQELGLS-YVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 97777765 45555655 5887 99999999888 48999999999998754
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=2.4e-17 Score=192.28 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=108.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-ccccc----------------------ccccccc--cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~----------------------~vpa~~~--~~ 494 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++... ...|. ++|.... ..
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 45689999999 89999999999999999999999876432 01221 1121000 00
Q ss_pred cchHHHH-------------------------HhhcCchhhH-hhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 495 VPWFDSV-------------------------FADIGDEQSL-SQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 495 i~~~~~i-------------------------~~~ig~~q~i-~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
+.+++++ +..++..... .....++|+++++...+ .+++.+|++|||||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 1111111 1222222211 23456788877665555 4678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+.....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+...
T Consensus 173 D~~~~~~l~-~~l~~l~~~g~t-viiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 173 TEKETEILL-DIIRDLKAHGVA-CVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHH-HHHHHHHhCCCE-EEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 997777665 566677777887 99999998776 68999999999988654
No 244
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-17 Score=193.07 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=108.0
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------ccccccc-----ccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSE-----YAK 494 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------~~vpa~~-----~~~ 494 (843)
.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|... ...
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 478899999 88999999999999999999999754311 001 0122110 000
Q ss_pred cchHH---------------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCC
Q 003163 495 VPWFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 495 i~~~~---------------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~s 545 (843)
...++ .++..++.. +.....+.++|+++++...+ .+++.+|+||||||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 11111 122333432 23445566788877665555 56688999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|||+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+.+..
T Consensus 426 ~LD~~~~~~l~-~~l~~l~~~g~t-viivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 426 GIDVGAKHEIY-NVIYELAAQGVA-VLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred CCCHhHHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 99997777775 566677878887 99999998877 699999999999887643
No 245
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.6e-17 Score=175.04 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=105.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ...|. ++|. ..
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 110 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ-RP 110 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEec-CC
Confidence 46789999999 89999999999999999999999876531 12221 1111 00
Q ss_pred cc--cchHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
.. ....+++. ..++.. ..+......+|+++++. ..+.+++.+|+++|||||
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 01111111 111111 12233445678766554 455567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+.+|++....
T Consensus 191 t~~LD~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 191 ASALDPISTMQLE-ETMFELKK-NYT-IIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred cccCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999997766665 55566654 676 99999998776 789999999999987543
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=191.84 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=107.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------ccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AKV 495 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~--~~i 495 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 45689999999 899999999999999999999997653211 111 1221000 001
Q ss_pred chHHHH------------------------HhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 496 PWFDSV------------------------FADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 496 ~~~~~i------------------------~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+.+++ +..++.........+++|+++++...+ .+++.+|++|||||||+|||+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 111221 222333223344556788777665544 5678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+..+
T Consensus 175 ~~~~l~-~~l~~~~~~g~t-iiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 175 EIEQLF-RVIRELRAEGRV-ILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 777664 566667777887 99999998776 68999999999998653
No 247
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.3e-17 Score=172.61 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=103.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
.+.++.+++|+ ..|++++|+||||||||||||+|+++... ...|. +++....
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 45689999999 88999999999999999999999876531 11221 1111000
Q ss_pred -cccchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
....+.+++ +..++.. ........++|+++++. ..+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 000111111 1111221 12233445677766554 4455678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|.+..+
T Consensus 176 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 176 SALDPISSSEIE-ETLMELKH-QYT-FIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred ccCCHHHHHHHH-HHHHHHHc-CCe-EEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 999997766664 55555654 566 99999998875 68999999999998654
No 248
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=172.53 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=103.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh-hc---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~---q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|.++.. .+ ..|. ++|....
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 35689999999 8899999999999999999999976531 11 1221 1111000
Q ss_pred -cccchHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
......+++. ..++.. .........+|+++++. ..+.+++.+|+++||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0011122221 011110 11223345677766554 4445678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+....
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 177 SALDPISAGKIE-ETLLGLKD-DYT-MLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred cccCHHHHHHHH-HHHHHHhh-CCe-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999997777665 56666654 566 99999998754 789999999999987653
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2e-17 Score=193.28 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=106.9
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------------ccccccccc--cc---ccc
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSE--YA---KVP 496 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------------~G~~vpa~~--~~---~i~ 496 (843)
++.+++|+ ..|++++|+||||||||||||+|+++..... .-.++|... .. .+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 78999999 8899999999999999999999976531100 001222210 00 011
Q ss_pred hHH------------------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCC
Q 003163 497 WFD------------------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIG 544 (843)
Q Consensus 497 ~~~------------------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~ 544 (843)
+++ .++..++.. +.......++|+++++...+ .+++.+|++|||||||
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 111 223334443 33455566788877665555 5668899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|||+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+...
T Consensus 438 ~~LD~~~~~~l~-~~l~~l~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 438 RGIDVGAKAEIY-KVMRQLADDGKV-ILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred CCcCHHHHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999997777664 666677777887 99999998766 68999999999988653
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=2.7e-17 Score=193.18 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=108.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc------------------------cccccccc----
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G------------------------~~vpa~~~---- 492 (843)
+.++++++|+ ..|++++|+||||||||||||+|+++.. ..| .++|....
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 5689999999 8999999999999999999999976531 111 12222100
Q ss_pred cccchHH-----------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 493 AKVPWFD-----------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 493 ~~i~~~~-----------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
....+.+ .++..++.. ........++|+++++...+ .+++.+|++|||||||+||
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 0011111 122334443 23455567788877665555 5668999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+.....+. .++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 457 D~~~~~~l~-~~l~~~~~~~~~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 457 DKTVQAQIL-ALLKSLQQKHQLA-YLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred CHHHHHHHH-HHHHHHHHhhCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 997777775 55666665 4787 99999998776 689999999999987553
No 251
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.2e-17 Score=172.18 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=104.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||+||||||++|+++... ...|. ++|. ..
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q-~~ 94 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ-KP 94 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEec-CC
Confidence 35689999999 89999999999999999999999876421 11221 1111 00
Q ss_pred cc--cchHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
.. ....+++. ..++. ..........+|+++++. ..+.+++.+|+++|||||
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 174 (251)
T PRK14270 95 NPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174 (251)
T ss_pred CcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 11111111 11111 111233445677766554 445567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+....
T Consensus 175 ~~~LD~~~~~~l~-~~L~~~~~-~~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 175 TSALDPISTLKIE-DLMVELKK-EYT-IVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-CCe-EEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 9999997777765 56666665 566 99999998775 689999999999987553
No 252
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.2e-17 Score=174.25 Aligned_cols=155 Identities=16% Similarity=0.208 Sum_probs=102.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++.... ..|. +++....
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35689999999 899999999999999999999998765320 1221 1111000
Q ss_pred --cccchHHHH----------------------HhhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 --AKVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 --~~i~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
....+.+++ +..++. .+.......++|+++++. ..+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001111211 111121 112233345677766554 455567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee------eeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE------NACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~------ng~v~fd 598 (843)
|+|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+. +|.+...
T Consensus 176 t~~LD~~~~~~l~-~~l~~~~~-~~t-viivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 176 CSALDPISTLAIE-DLINELKQ-DYT-IVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999997777664 56666654 566 99999998775 6899888886 6777654
No 253
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.7e-17 Score=171.74 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=103.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+||||+||||||++|+++.-. ...|. +++....
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 35689999999 88999999999999999999999875421 11121 1111000
Q ss_pred -cccchHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~ 544 (843)
......+++. ..++.. .........+|+++++ +..+.+++.+|+++||||||
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 0011111111 111111 1123344567776655 45555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.| +|++||+.+. ..+++++..+.+|.+....
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~t-ili~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 175 SALDPIATQRIE-KLLEELSE-NYT-IVIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred cccCHHHHHHHH-HHHHHHhc-CcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999997777664 55555654 666 9999999885 5789999999999987543
No 254
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.71 E-value=4.8e-17 Score=167.57 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=96.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc--------------------cccccccc--ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEYA--KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~--------------------~vpa~~~~--~i~~ 497 (843)
++.++++++|+ ..|++++|+||||+||||||++|+++.... .|. ++|..... ....
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL-AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 45688999999 889999999999999999999997653211 111 11110000 0111
Q ss_pred H---------------HHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 498 F---------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 498 ~---------------~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
. ..++..++...........+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++.
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 169 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAMA 169 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHH
Confidence 1 122333444444445566788766555 4455678999999999999999997777765 5565
Q ss_pred HHHhcCCeEEEEEccchh-HHhhhccc
Q 003163 562 AFAESGSLLTIATTHHGE-LKTLKYSN 587 (843)
Q Consensus 562 ~L~~~g~t~vlitTHd~e-l~~~a~~~ 587 (843)
.+.+.|.+ +|++||+.. +..++++.
T Consensus 170 ~~~~~g~t-iii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 170 GHCARGGM-VVLTTHQDLGLSEAGARE 195 (201)
T ss_pred HHHhCCCE-EEEEecCchhhhhcccee
Confidence 66666887 999999755 44555544
No 255
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.71 E-value=2.6e-17 Score=191.47 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=106.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------------cccccccc--c-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEYA--K- 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------------~vpa~~~~--~- 494 (843)
++.++++++|+ ..|++++|+||||||||||||+|++.......|. +++..... .
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 45689999999 8999999999999999999999987532101110 11110000 0
Q ss_pred -cch-------------------------HHHHHhhcCchh-hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 495 -VPW-------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 495 -i~~-------------------------~~~i~~~ig~~q-~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
..+ ...++..++... ......+++|+++++...+ .+++.+|++|||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 000 011222334433 3445567788877665544 567899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh--hhccccceeeeEEEEec
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT--LKYSNDFFENACMEFDE 599 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~--~a~~~~~v~ng~v~fd~ 599 (843)
||+.....+. .++..+.+.+.++||++|||.++.. +++++..+.+|.+....
T Consensus 432 LD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 432 LDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9997777775 5666666655423999999998774 47888888999876554
No 256
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=4.9e-17 Score=167.31 Aligned_cols=143 Identities=17% Similarity=0.116 Sum_probs=96.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++.+++|+ .+|++++|+|||||||||||++|+++.... .| .++|.... ....+
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 45689999999 899999999999999999999997653211 11 01111000 00111
Q ss_pred HH----------------HHHhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 498 FD----------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 498 ~~----------------~i~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
.+ .++..++..+........+|++++ ++..+.+++.+|+++||||||+|+|+.....+. .++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~~l 170 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-TKI 170 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-HHH
Confidence 11 122233333333444566776554 555556779999999999999999997777665 555
Q ss_pred HHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 561 EAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
..+.+.|.+ +|++||+.++..-+|.
T Consensus 171 ~~~~~~~~t-iii~sh~~~~~~~~d~ 195 (200)
T PRK13540 171 QEHRAKGGA-VLLTSHQDLPLNKADY 195 (200)
T ss_pred HHHHHcCCE-EEEEeCCchhccccch
Confidence 666667887 9999999988865543
No 257
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=4.9e-17 Score=190.49 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=107.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------------------------cccccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------LHILSSEY 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------------------------~~vpa~~~ 492 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|....
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 4689999999 899999999999999999999997653211 11 12221100
Q ss_pred --cccchHHH--------------------HHhhcCchh-----hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCC
Q 003163 493 --AKVPWFDS--------------------VFADIGDEQ-----SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 --~~i~~~~~--------------------i~~~ig~~q-----~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~ 544 (843)
..+.+++. ++..++... .......++|+++++...+ .+++.+|++|||||||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00111111 122334322 2445667888877665554 5678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|||+.....+. .++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+.++
T Consensus 456 ~~LD~~~~~~l~-~~l~~l~~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 456 GTMDPITKVDVT-HSILKAREEMEQT-FIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHcCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999997777775 55555654 5787 99999998876 68999999999998754
No 258
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.71 E-value=4.6e-17 Score=167.11 Aligned_cols=136 Identities=20% Similarity=0.172 Sum_probs=92.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------cccccccc--cccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~--~~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||+++|++.... ..| .+++.... .....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 45789999999 88999999999999999999999765311 111 12221000 00111
Q ss_pred HH-----------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 498 FD-----------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 498 ~~-----------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
.+ ..+..++....+.....++|+++++. ..+.+++.+|+++||||||+|+|+.....+ ..+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 169 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AGL 169 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HHH
Confidence 11 12233444444455567788766555 444567899999999999999999766666 456
Q ss_pred HHHHHhcCCeEEEEEccchh
Q 003163 560 LEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~e 579 (843)
+..+.+.|.+ +|++||+..
T Consensus 170 l~~~~~~~~t-ii~~sH~~~ 188 (198)
T TIGR01189 170 LRAHLARGGI-VLLTTHQDL 188 (198)
T ss_pred HHHHHhCCCE-EEEEEcccc
Confidence 6666666887 999999863
No 259
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6e-17 Score=172.10 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=103.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~-----------------------~vpa~~~ 492 (843)
++.++++++|+ ..|++++|+|||||||||||++|+++... . ..|. +++....
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 34689999999 89999999999999999999999875321 0 1121 1111000
Q ss_pred -cccchHHHHHh----------------------hcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSVFA----------------------DIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i~~----------------------~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~ 544 (843)
......+++.. .++.. ........++|+++++ +..+.+++.+|+++||||||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00111122210 11110 1122334567776655 45555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+|||+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|.+..+.
T Consensus 175 ~~LD~~~~~~l~-~~l~~~~~-~~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 175 SALDPISTLKIE-ELIQELKK-DYT-IVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999997777765 55566654 676 99999998865 689999999999987553
No 260
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.6e-17 Score=161.00 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=92.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccch--HHHHHhhcCchhhHhhhhhhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW--FDSVFADIGDEQSLSQSLSTF 518 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~--~~~i~~~ig~~q~i~~~lstf 518 (843)
..+..+++++ .+|++++|+||||+|||||+++|+++... ..|..... +..+.. .......++. +..+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~--~~~~~~~~~~~~~~~i~~-------~~ql 81 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILID--GKDIAKLPLEELRRRIGY-------VPQL 81 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEEC--CEEcccCCHHHHHhceEE-------EeeC
Confidence 4688999999 88899999999999999999999765332 22211110 000000 0011111111 1116
Q ss_pred hHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeee
Q 003163 519 SGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENA 593 (843)
Q Consensus 519 S~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~~~~v~ng 593 (843)
|+++++ +..+.+++.+|+++|||||++|+|+.....+. .++..+.+.+.+ +|++||+.++.. ++++...+.+|
T Consensus 82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRT-VIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCc
Confidence 766554 45556678899999999999999997777765 455555555676 999999988875 55777666554
No 261
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.71 E-value=3.2e-17 Score=191.76 Aligned_cols=153 Identities=15% Similarity=0.064 Sum_probs=106.7
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------------ccccccccc-----ccccc
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSE-----YAKVP 496 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------------~G~~vpa~~-----~~~i~ 496 (843)
++.+++|+ ..|++++|+||||||||||||+|+++..... .-.|+|... .....
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 57889999 8899999999999999999999976531110 001233210 00001
Q ss_pred hHH------------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFD------------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~------------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
..+ .++..++.. .......+.+|+++++...+ .+++.+|+||||||||+|||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 111 122333443 33445566788777665555 5678899999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+...
T Consensus 438 ~~~~l~-~~l~~l~~~g~t-iIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 438 ARNDIY-QLIRSIAAQNVA-VLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 777765 566677777887 99999998777 68999999999988754
No 262
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=5.1e-17 Score=190.80 Aligned_cols=155 Identities=17% Similarity=0.142 Sum_probs=107.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-------------------------cccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-------------------------HILSSE 491 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-------------------------~vpa~~ 491 (843)
..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|...
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 4689999999 899999999999999999999997765320 1221 112100
Q ss_pred cc-c---cchHH----------------------HHHhhcCchh---hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEe
Q 003163 492 YA-K---VPWFD----------------------SVFADIGDEQ---SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLD 541 (843)
Q Consensus 492 ~~-~---i~~~~----------------------~i~~~ig~~q---~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLD 541 (843)
.. . ..+.+ ..+..++..+ ......+++|+++++...+ .+++.+|++||||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 0 00000 1122223321 2344566788877665555 5678999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 542 EIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 542 EP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||+||||.....+. .++..+... |.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 182 EPt~~LD~~~~~~l~-~~l~~l~~~~g~t-vi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 182 EPTTALDVSVQAQIL-QLLRELQQELNMG-LLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred CCCCccCHHHHHHHH-HHHHHHHHhcCCe-EEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 999999997777765 566666654 787 99999998776 68999999999998754
No 263
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=5.7e-17 Score=175.89 Aligned_cols=154 Identities=18% Similarity=0.088 Sum_probs=103.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHHH----------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV---------- 501 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~i---------- 501 (843)
+.++.+++|. ..|++++|+|||||||||||++|+++... ..| .|+|..... ...+.+++
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~ 128 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-SEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYR 128 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHH
Confidence 5689999999 89999999999999999999999765322 122 122321000 00111211
Q ss_pred ----HhhcCchhhHh-----------hhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 502 ----FADIGDEQSLS-----------QSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 502 ----~~~ig~~q~i~-----------~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
+..++....+. .....+|+++++ +..+.+++.+|+++||||||+|||+.....+...++..+.
T Consensus 129 ~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~- 207 (282)
T cd03291 129 YKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM- 207 (282)
T ss_pred HHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-
Confidence 11112211111 112467766655 4555567899999999999999999776666554555554
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 566 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 566 ~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+.+ ||++||+.+....|+++..+.+|.+.+.
T Consensus 208 ~~~t-IiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 208 ANKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 3676 9999999988888999999999988654
No 264
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.6e-17 Score=171.60 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=104.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.. . +..|. ++|....
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 35689999999 8999999999999999999999987642 1 01121 1111000
Q ss_pred --cccchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecC
Q 003163 493 --AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 --~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP 543 (843)
....+.+++ +..++.. +........+|+++++.. .+.+++.+|++||||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001111111 1112211 112233455777665554 44567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+|+.....+. .+++.+.+ +.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 176 ~~gLD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 176 ASALDPISTLKIE-ELIEELKE-KYT-IIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-CCc-EEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999997776664 56666665 566 99999998876 78999999999998654
No 265
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.7e-17 Score=191.14 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=102.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------cccccc--ccccch----------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE--YAKVPW---------- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~--~~~i~~---------- 497 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. +++... ...+..
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 91 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTE 91 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHH
Confidence 45789999999 889999999999999999999997654221 111 122100 000000
Q ss_pred -------------------------------------------HHHHHhhcCchhhH-hhhhhhhhHHhHHHHHH-HHhC
Q 003163 498 -------------------------------------------FDSVFADIGDEQSL-SQSLSTFSGHLKQIGNI-ISQS 532 (843)
Q Consensus 498 -------------------------------------------~~~i~~~ig~~q~i-~~~lstfS~~~~~l~~i-l~~a 532 (843)
+..++..+|..... ....+++|+++++...+ .+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~ 171 (530)
T PRK15064 92 LWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF 171 (530)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence 11123334443322 23567889887766555 4668
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 533 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 533 ~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
.+|++|||||||+|||+.....+. .++ .+.|.| ||+||||.++. .+|+++..+.+|.+.
T Consensus 172 ~~p~lLlLDEPt~~LD~~~~~~l~-~~l---~~~~~t-iiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 172 SNPDILLLDEPTNNLDINTIRWLE-DVL---NERNST-MIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHHHHH-HHH---HhCCCe-EEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 899999999999999996666553 333 446777 99999998876 689999999888874
No 266
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=5.7e-17 Score=169.37 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=96.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-----------------------------cccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILSSE 491 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-----------------------------~vpa~~ 491 (843)
..++.+++|+ ..|++++|+|||||||||||++|+++... ..|. ++|. .
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q-~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ-F 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec-c
Confidence 4689999999 89999999999999999999999765321 1111 1121 0
Q ss_pred cccc---chHHH---------------------HHhhcCchhhH-hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 492 YAKV---PWFDS---------------------VFADIGDEQSL-SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 492 ~~~i---~~~~~---------------------i~~~ig~~q~i-~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
.... ...+. ++..++..+.. ......+|+++++. ..+.+++.+|+++||||||+
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 178 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTA 178 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 0000 00011 12223332221 33445677766554 44556788999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFF 590 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v 590 (843)
|+|+.....+. .++..+.+.|.| +|++||+.++. .+|+++..+
T Consensus 179 ~LD~~~~~~l~-~~l~~~~~~g~t-ii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 179 SLDAANRQVVV-ELIAEAKARGAA-LIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred cCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcceeEec
Confidence 99997777765 566666767887 99999999877 478766543
No 267
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.70 E-value=7.2e-17 Score=178.80 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=106.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--cccc-------------------------ccccccc-
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSGL-------------------------HILSSEY- 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--q~G~-------------------------~vpa~~~- 492 (843)
..++++++|+ ..|++++|+|+||||||||+++|.++.-.. ..|. +++....
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 4689999999 899999999999999999999997664321 1221 1221100
Q ss_pred c---ccchHHH----------------------HHhhcCchh---hHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecC
Q 003163 493 A---KVPWFDS----------------------VFADIGDEQ---SLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~---~i~~~~~----------------------i~~~ig~~q---~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP 543 (843)
. .+.+..+ ++..++..+ .+......+|+++++... +.+++.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 0011111 112222211 122344567887765554 4567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+ .|.+ +|++|||..+. .+++++..|.+|.+...
T Consensus 189 ts~LD~~~~~~i~-~lL~~l~~~~g~t-il~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 189 TTALDVTVQAQIM-TLLNELKREFNTA-IIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred CccCCHHHHHHHH-HHHHHHHHHcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999997777765 55666655 4787 99999999887 58999999999998754
No 268
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=3.7e-17 Score=168.90 Aligned_cols=151 Identities=12% Similarity=0.042 Sum_probs=100.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~--i~~ 497 (843)
..++.+++|. ..|++++|+||||+||||||++|+++.... .|. ++|. .... ..+
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~~~~~tv 98 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE-EGKIEIDGIDISTIPLEDLRSSLTIIPQ-DPTLFSGTI 98 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC-CCeEEECCEEhHHCCHHHHHhhEEEEec-CCcccCccH
Confidence 4689999999 899999999999999999999997653211 121 1111 0000 011
Q ss_pred HHHHH--hhcCchh-----hHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCe
Q 003163 498 FDSVF--ADIGDEQ-----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 569 (843)
Q Consensus 498 ~~~i~--~~ig~~q-----~i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t 569 (843)
.+++. ..+...+ .+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..+. .|.+
T Consensus 99 ~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~t 176 (207)
T cd03369 99 RSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ-KTIREEF-TNST 176 (207)
T ss_pred HHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCCE
Confidence 11110 0011000 0122345677655 4555556778999999999999999997766654 5555554 3776
Q ss_pred EEEEEccchhHHhhhccccceeeeEEEE
Q 003163 570 LTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 570 ~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
+|++||+.+....++++..+.+|.+..
T Consensus 177 -iii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 177 -ILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred -EEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 999999998876788888898888754
No 269
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.2e-17 Score=189.83 Aligned_cols=153 Identities=16% Similarity=0.055 Sum_probs=106.8
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc----------------cccccccc-----ccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG----------------LHILSSEY-----AKV 495 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G----------------~~vpa~~~-----~~i 495 (843)
.++.+++|. ..|++++|+||||||||||||+|+++..... .| .++|.... ...
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 341 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYL 341 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCC
Confidence 588999999 8999999999999999999999976532100 00 12221100 000
Q ss_pred chH---------------------------HHHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 496 PWF---------------------------DSVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 496 ~~~---------------------------~~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
.++ ..++..++.. +.......++|+++++...+ .+++.+|++|||||||+|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~g 421 (491)
T PRK10982 342 DIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRG 421 (491)
T ss_pred cHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 000 0112223332 23455667788777665555 567899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
+|+.....+. .++..+.++|.| ||++|||.++. .+|+++..+.+|.+.+
T Consensus 422 LD~~~~~~~~-~~l~~l~~~~~t-vi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 422 IDVGAKFEIY-QLIAELAKKDKG-IIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred cChhHHHHHH-HHHHHHHHCCCE-EEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 9997777775 566777778887 99999998776 6999999999998874
No 270
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.1e-17 Score=172.22 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=103.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh-hc---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~---q~G~-----------------------~vpa~~~ 492 (843)
.+.++++++|+ ..|++++|+|||||||||||++|+++.. .. +.|. ++|. ..
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~ 95 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQ-QP 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEEC-CC
Confidence 45689999999 8899999999999999999999977532 11 1221 1121 10
Q ss_pred cc--cchHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
.. ..+.+++. ..++. ..........+|+++++. ..+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 175 (252)
T PRK14255 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175 (252)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 01111111 00111 011223345677766554 455567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|.+..+.
T Consensus 176 t~~LD~~~~~~l~-~~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 176 TSALDPISSTQIE-NMLLELRD-QYT-IILVTHSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred CccCCHHHHHHHH-HHHHHHHh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997777765 55556655 466 99999998876 689999999999987653
No 271
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.6e-17 Score=175.64 Aligned_cols=154 Identities=17% Similarity=0.217 Sum_probs=102.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|. ..
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q-~~ 129 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQ-KP 129 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEec-CC
Confidence 45689999999 89999999999999999999999776421 11221 1111 00
Q ss_pred ccc--chHHHH--------------------HhhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 493 AKV--PWFDSV--------------------FADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 493 ~~i--~~~~~i--------------------~~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
..+ .+.+++ +..++.. +.+......+|+++++. ..+.+++.+|+||||||||+
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts 209 (285)
T PRK14254 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209 (285)
T ss_pred ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000 111111 1122221 12334456778766554 55556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccc-ceeeeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSND-FFENACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~-~v~ng~v~fd 598 (843)
|||+.....+ ..++..+.+ +.+ ||++||+.++. .+++++. .+.+|.+..+
T Consensus 210 ~LD~~~~~~l-~~~L~~~~~-~~t-iii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 210 ALDPVATSKI-EDLIEELAE-EYT-VVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred CCCHHHHHHH-HHHHHHHhc-CCE-EEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 9999666666 456666665 366 99999998886 5788754 4588888654
No 272
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.7e-17 Score=167.28 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=107.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh----------hh------------cccccccccccccccc--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------MM------------AKSGLHILSSEYAKVP-- 496 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~----------~~------------~q~G~~vpa~~~~~i~-- 496 (843)
+.++.+++|+ ..|++++|+||||||||||.++|.+.- +- +..|+++.-+....++
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 5899999999 999999999999999999999996431 11 1223332111111111
Q ss_pred ---h------------------H----HHHHhhcCchh-hHhhhh-hhhhHHhHHHHHHHH-hCCCCcEEEEecCCCCCC
Q 003163 497 ---W------------------F----DSVFADIGDEQ-SLSQSL-STFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 497 ---~------------------~----~~i~~~ig~~q-~i~~~l-stfS~~~~~l~~il~-~a~~p~LLLLDEP~sGlD 548 (843)
. | ......++... .+..++ -.|||+-++...++. ++.+|+++|||||-||||
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 0 0 11122233322 222333 258887776666665 478999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh--ccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a--~~~~~v~ng~v~fd~ 599 (843)
. +...+....++.+++.|.+ ++++|||..+..|. +.+..+.+|++...+
T Consensus 177 I-dalk~V~~~i~~lr~~~~~-~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 177 I-DALKIVAEGINALREEGRG-VLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred H-HHHHHHHHHHHHHhcCCCe-EEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 8 5555556777889999987 99999999999877 777788889887644
No 273
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.6e-17 Score=174.60 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=101.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.-. . ..|. ++|. ..
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q-~~ 110 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ-RP 110 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEcc-CC
Confidence 45689999999 89999999999999999999999865321 0 1221 1121 00
Q ss_pred ccc--chHHHHH--------------------hhcCc----hhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCC
Q 003163 493 AKV--PWFDSVF--------------------ADIGD----EQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 493 ~~i--~~~~~i~--------------------~~ig~----~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~s 545 (843)
..+ .+++++. ..++. .+........+|+++++ +..+.+++.+|++|||||||+
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 190 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS 190 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 000 1112211 11111 01122334557766554 555567789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee---------eeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE---------NACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~---------ng~v~fd 598 (843)
|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+. +|.+..+
T Consensus 191 ~LD~~~~~~l~-~~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 191 ALDPISTRQVE-ELCLELKE-QYT-IIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99997777765 55555654 566 99999998766 6889888886 5776544
No 274
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=6.4e-17 Score=165.79 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=93.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-----------------ccccccc--cccchHH--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD-- 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-----------------~vpa~~~--~~i~~~~-- 499 (843)
+.+.+ ++|+ ..|++++|+||||||||||+++|+++... ..|. +++.... ......+
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHH
Confidence 34444 8888 88999999999999999999999765321 1111 1121000 0011111
Q ss_pred --------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 500 --------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 500 --------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
.++..++.........+.+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++....
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~ 170 (195)
T PRK13541 92 KFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN-NLIVMKA 170 (195)
T ss_pred HHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 11233344444555667788766554 4455678999999999999999997766654 5555556
Q ss_pred hcCCeEEEEEccchhHHhhhcc
Q 003163 565 ESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+.+ +|++||+.+....++.
T Consensus 171 ~~~~t-iii~sh~~~~i~~~~~ 191 (195)
T PRK13541 171 NSGGI-VLLSSHLESSIKSAQI 191 (195)
T ss_pred hCCCE-EEEEeCCccccchhhe
Confidence 67787 9999999887766553
No 275
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.70 E-value=6.2e-17 Score=169.48 Aligned_cols=144 Identities=22% Similarity=0.166 Sum_probs=96.6
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------ccccccccccc----ccchHH-------------
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------SGLHILSSEYA----KVPWFD------------- 499 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------~G~~vpa~~~~----~i~~~~------------- 499 (843)
..|++++|+||||||||||+|+|+++..... .-.|+|..... .....+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 4678999999999999999999976532111 01122221100 011111
Q ss_pred ------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 003163 500 ------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 566 (843)
Q Consensus 500 ------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~ 566 (843)
.++..++..+........+|+++++. ..+.+++.+|+++||||||+|+|+.....+. .++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT-ELFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHc
Confidence 12233344334444556778776655 4455778999999999999999997777775 555666666
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 567 GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 567 g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|.| +|++||+.+.. .+|+++..+ +|.+..+
T Consensus 163 ~~t-vii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 163 GTA-ILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred CCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 887 99999998755 688888877 7888754
No 276
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=170.23 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=102.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~-----------------------~vpa~~~ 492 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.-. + ..|. +++. ..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~ 96 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQ-RP 96 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEec-CC
Confidence 45789999999 89999999999999999999999765321 1 1221 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP 543 (843)
..+ .+.+++. ..++. ...+......+|++++ ++..+.+++.+|+++|||||
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 1111110 11111 0112233455776655 45555677899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+|+.....+. .++..+.+ +.+ ||++||+.+.. .+++++..+.+|++...
T Consensus 177 ~~gLD~~~~~~l~-~~l~~~~~-~~t-vii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 177 CSALDPIATAKIE-DLIEDLKK-EYT-VIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred cccCCHHHHHHHH-HHHHHHhh-Cce-EEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999997777664 56666665 566 99999998776 68999999999998654
No 277
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1e-16 Score=170.17 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=103.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc----------------------cccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL----------------------HILSSEYA 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~----------------------~vpa~~~~ 493 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.-.. ..|. ++|. ...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-~~~ 93 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ-KPN 93 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEec-CCC
Confidence 45689999999 899999999999999999999997654321 1221 1111 000
Q ss_pred c--cchHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 494 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 494 ~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. ....+++. ..++.. ..+......+|+++++. ..+.+++.+|+|+||||||
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 173 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 01111111 001110 11222334677666554 4555678899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|+|+.....+ ..++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~-~~t-ii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 174 SALDPIATHKI-EELMEELKK-NYT-IVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred ccCCHHHHHHH-HHHHHHHhc-CCe-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999666665 456666665 566 99999998875 68999999999998764
No 278
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=170.00 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=102.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc----ccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----SGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q----~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.-... .|. ++|. ..
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 94 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQ-QP 94 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEec-CC
Confidence 35689999999 8899999999999999999999977643210 121 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
..+ .+.+++. ..++.. .........+|+++++ +..+.+++.+|+++|||||
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 174 (251)
T PRK14249 95 NPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174 (251)
T ss_pred ccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 1111110 011111 1122334457766554 5555667899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+. .+.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 175 t~~LD~~~~~~l~-~~l~~~~-~~~t-ilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 175 CSALDPVSTMRIE-ELMQELK-QNYT-IAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred CccCCHHHHHHHH-HHHHHHh-cCCE-EEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 9999997777664 5666664 4776 99999998776 68899999999998654
No 279
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=7.2e-17 Score=167.76 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=115.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------------cccc---cccccc----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILS---SEYAKV---- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------------~vpa---~~~~~i---- 495 (843)
...++++||+|+ .+|+.++|+|+||||||||||+|+++..+.. |. +-|. .++..+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~-G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-ceEEEcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence 356899999999 8899999999999999999999976644322 11 1110 000000
Q ss_pred -c--------hHHHHHhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 496 -P--------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 496 -~--------~~~~i~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
+ .++.+...-...+.+.+++.+||.+|+ |++..++...+|++|||||..+--|+.-...- ...+..+.+
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~-~~rl~e~~~ 195 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERLNELVE 195 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH-HHHHHHHHH
Confidence 0 012222222345678889999999985 66777778899999999999999999665554 456666766
Q ss_pred cCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003163 566 SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 566 ~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~ 600 (843)
++.+ +|++||++... .+|++...+.+|.+.+.++
T Consensus 196 ~~~t-iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~ 230 (249)
T COG1134 196 KNKT-IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230 (249)
T ss_pred cCCE-EEEEECCHHHHHHhcCeeEEEeCCEEEEcCC
Confidence 7776 99999998766 7999999999999988753
No 280
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1e-16 Score=172.67 Aligned_cols=148 Identities=14% Similarity=0.258 Sum_probs=97.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++... ...|. ++|. ..
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 103 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ-QP 103 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEcc-CC
Confidence 45689999999 89999999999999999999999776321 12221 1111 00
Q ss_pred ccc--chHHHH--------------------HhhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 493 AKV--PWFDSV--------------------FADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 493 ~~i--~~~~~i--------------------~~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
..+ .+.+++ +..++. ...+......+|+++++. ..+.+++.+|++|||||||+
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 183 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 000 111111 111111 011222334577766554 45556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
|||+.....+. .++..+.+ +.+ ||++||+.++. .+|+++..+.+
T Consensus 184 gLD~~~~~~l~-~~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 184 ALDPISTLKIE-ETMHELKK-NFT-IVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEec
Confidence 99997777664 56666654 676 99999998766 68888888876
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.70 E-value=6.4e-17 Score=188.73 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=106.7
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----c----------------ccccccccc-----cccc
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----S----------------GLHILSSEY-----AKVP 496 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~----------------G~~vpa~~~-----~~i~ 496 (843)
++.+++|. ..|++++|+||||||||||||+|+++..... . -.|+|.... ..+.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 68889999 8899999999999999999999976532110 0 012222100 0011
Q ss_pred hHH---------------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 497 WFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 497 ~~~---------------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
+.+ .++..++.. ........++|+++++...+ .+++.+|++|||||||+||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 111 122333432 23445556788877665555 5668899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 427 D~~~~~~l~-~~l~~~~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 427 DVGAKKEIY-QLINQFKAEGLS-IILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred CHhHHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 997777775 566667777887 99999998776 689999999999986543
No 282
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=170.29 Aligned_cols=156 Identities=18% Similarity=0.266 Sum_probs=104.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ .+|++++|+||||+|||||||+|+++.... ..|. +++....
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 45789999999 889999999999999999999998764221 1121 1111000
Q ss_pred --cccchHHHHHh---hcC--ch---------------------hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 --AKVPWFDSVFA---DIG--DE---------------------QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 --~~i~~~~~i~~---~ig--~~---------------------q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
....+.+++.. ..+ .. .......+.+|+++++ +..+.+++.+|+++|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00111222210 001 00 1112234567766654 5555677899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
++|+|+.....+. .+++.+.+ +.| +|++||+.+.. .+|+++..+.+|.+..+.
T Consensus 176 ~~~LD~~~~~~l~-~~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 176 TSALDPASTARIE-DLMTDLKK-VTT-IIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997766664 56666654 676 99999998876 589999999999997653
No 283
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=170.68 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=104.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------------cccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------------LHILSSEY 492 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------------~~vpa~~~ 492 (843)
+++.++.+++|. .+|++++|+|||||||||||++|++...... .| .++|....
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 456789999999 8899999999999999999999976532111 01 11111000
Q ss_pred --cccchHHHH----------------------HhhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 --AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 --~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
....+.+++ +..++.. .........+|+++++ +..+.+++.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 001111111 1112221 1122333557766654 4555677899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|||+.....+. .++..+.+ ++| ||++||+.++. .+|++...+.+|.+...
T Consensus 181 t~~LD~~~~~~l~-~~l~~~~~-~~t-iilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 181 TSMIDIVNSQAIE-KLITELKN-EIA-IVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CcE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999997777664 56666654 576 99999999877 68999999999988654
No 284
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=8.3e-17 Score=157.96 Aligned_cols=156 Identities=18% Similarity=0.204 Sum_probs=111.2
Q ss_pred cCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc----------------------------cc
Q 003163 439 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI----------------------------LS 489 (843)
Q Consensus 439 ~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v----------------------------pa 489 (843)
.++..++++++|. ..|++++||||+|||||||||+++.+.-+.. |... +.
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~-G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC-ceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 4577899999999 8899999999999999999999975432211 1100 00
Q ss_pred --ccccccch-----------HHHHHhhcCchhhHh-hhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChhhHHH
Q 003163 490 --SEYAKVPW-----------FDSVFADIGDEQSLS-QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 554 (843)
Q Consensus 490 --~~~~~i~~-----------~~~i~~~ig~~q~i~-~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~a 554 (843)
..+..+++ +-.++.+++..+++. .....+||+ .++++.+..+..-|++||||||||+||+.....
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 00111111 223445555544433 344556665 455566666778999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEE
Q 003163 555 LGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACME 596 (843)
Q Consensus 555 l~~~lle~L~~~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~ 596 (843)
+..-|.+++++.... ++.+|||.+. .+.+++++.+..|+..
T Consensus 172 ie~mi~~~v~~q~vA-v~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 172 IEEMIHRYVREQNVA-VLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHhhhhceE-EEEEecChHHHhhhhheEEEeccCccc
Confidence 877777777788887 9999999877 5899999999888764
No 285
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=171.94 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=103.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|. ..
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 114 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ-KP 114 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEec-CC
Confidence 45689999999 89999999999999999999999876431 12231 1111 00
Q ss_pred cc--cchHHHHHh-----hcCc---------------------hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSVFA-----DIGD---------------------EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i~~-----~ig~---------------------~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
.. ....+++.. .... ...+......+|+++++. ..+.+++.+|+++|||||
T Consensus 115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEP 194 (271)
T PRK14238 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP 194 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00 011122210 0000 011122334577666554 455567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+|+.....+. .++..+.+ +.+ +|++||+.++. .+|+++..+.+|.+...
T Consensus 195 t~~LD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 195 TSALDPISTLKVE-ELVQELKK-DYS-IIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred CCcCCHHHHHHHH-HHHHHHHc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999997777765 55566665 676 99999998875 68999999999998754
No 286
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=1e-16 Score=173.27 Aligned_cols=152 Identities=17% Similarity=0.107 Sum_probs=104.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
+..++.+++|. .+|++++|+||||+||||||++|.++.. ..| .++|. ....+ .
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q-~~~lf~~t 92 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ-KVFIFSGT 92 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECC-Ccccchhh
Confidence 45689999999 8999999999999999999999976542 112 12222 11000 0
Q ss_pred hHHH--------------HHhhcCchhhHhhhhhh-----------hhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFDS--------------VFADIGDEQSLSQSLST-----------FSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~~--------------i~~~ig~~q~i~~~lst-----------fS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.++ .+..+|....+...... ||+++++...+ .+++.+|+++||||||+|+|+.
T Consensus 93 v~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~ 172 (275)
T cd03289 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI 172 (275)
T ss_pred HHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 1111 12233433333333322 88777665554 5678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. .++..+. .++| ||++||+.+....|+++..+.+|.+.+.
T Consensus 173 ~~~~l~-~~l~~~~-~~~t-ii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 173 TYQVIR-KTLKQAF-ADCT-VILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHH-HHHHHhc-CCCE-EEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 776664 4444443 4777 9999999988877999989988888654
No 287
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.1e-16 Score=191.48 Aligned_cols=155 Identities=13% Similarity=0.045 Sum_probs=108.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------------cccccccccc-c---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------SGLHILSSEY-A--- 493 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------------~G~~vpa~~~-~--- 493 (843)
..++++++|+ ..|++++|+||||||||||+|+|+++..... .-.+++.... .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 4589999999 8999999999999999999999976531100 0012222110 0
Q ss_pred ccchHH----------------------HHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCCh
Q 003163 494 KVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 ~i~~~~----------------------~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+.+ .++..+|.. .........+|+++++...+ .+++.+|+||||||||+|||+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 011111 123334543 33455667888877665555 566899999999999999999
Q ss_pred hhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.....+. .++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+...
T Consensus 497 ~~~~~i~-~ll~~l~~~~g~t-vi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 497 SIRGQII-NLLLDLQRDFGIA-YLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7777775 55656655 4887 99999998877 68999999999998654
No 288
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=6.8e-17 Score=189.76 Aligned_cols=150 Identities=18% Similarity=0.117 Sum_probs=104.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------cccccccc----cccchH-------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY----AKVPWF------- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~----~~i~~~------- 498 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .|+|.... ..+.+.
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 45688999999 889999999999999999999997653211 11 12332110 001111
Q ss_pred ---------HHHHhhcCch-hhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC
Q 003163 499 ---------DSVFADIGDE-QSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 567 (843)
Q Consensus 499 ---------~~i~~~ig~~-q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g 567 (843)
..++..++.. .......+++|+++++...+ .+++.+|++|||||||+|||+.....+.. ++.. .+
T Consensus 410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~---~~ 485 (530)
T PRK15064 410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-ALEK---YE 485 (530)
T ss_pred cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHH---CC
Confidence 1223344442 34456677888877665554 56689999999999999999977666643 3333 35
Q ss_pred CeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 568 SLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 568 ~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
.| ||++|||.++. .+|+++..+.+|.+.
T Consensus 486 ~t-vi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 486 GT-LIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 56 99999999877 589999999888875
No 289
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.69 E-value=5e-16 Score=180.71 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=96.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHH-------------------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS------------------- 500 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~------------------- 500 (843)
++.+..+++|. ..|..++|+||||+|||||||+|.+..-.. .|..... .+..++||++
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g-~~v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVG-ETVKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeC-CceEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 36788899999 777889999999999999999994322111 2322222 2223333322
Q ss_pred ----------HHhhcCc-hhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 501 ----------VFADIGD-EQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 501 ----------i~~~ig~-~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
.+..++. .+.....+.++||+.+ |+..+..++.+|+||||||||+.||.....++. +.|.++.+
T Consensus 412 ~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe----~aL~~f~G 487 (530)
T COG0488 412 PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE----EALLDFEG 487 (530)
T ss_pred ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHH----HHHHhCCC
Confidence 2222222 1233455567787654 555555668999999999999999996655554 45566777
Q ss_pred eEEEEEccchhHH-hhhccccceee
Q 003163 569 LLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 569 t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
| ||+||||.+|. ..|.++..+.+
T Consensus 488 t-vl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 488 T-VLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred e-EEEEeCCHHHHHhhcceEEEEcC
Confidence 7 99999999998 46666666655
No 290
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=172.83 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=104.5
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc----------------------ccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL----------------------HILSSEY 492 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~----------------------~vpa~~~ 492 (843)
+++.++.+++|+ .+|++++|+||||+||||||++|+++... ...|. ++|....
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 346789999999 89999999999999999999999776432 01221 1121000
Q ss_pred -cccchHHHH----------------------HhhcCchh----hHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSV----------------------FADIGDEQ----SLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i----------------------~~~ig~~q----~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~ 544 (843)
......+++ +..++... .+......+|+++++ +..+.+++.+|++|||||||
T Consensus 112 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt 191 (276)
T PRK14271 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPT 191 (276)
T ss_pred cCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 000111111 11122111 122334567776655 45555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+++++..+.+|.+...
T Consensus 192 ~~LD~~~~~~l~-~~L~~~~~-~~t-iiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 192 SALDPTTTEKIE-EFIRSLAD-RLT-VIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999997777665 56666665 466 99999998765 68999999999998754
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1e-16 Score=191.74 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=108.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------------------------cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------------------LH 486 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------------------------~~ 486 (843)
..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 4689999999 8999999999999999999999976532100 00 11
Q ss_pred ccccc----ccccchHH----------------------HHHhhcCch---hhHhhhhhhhhHHhHHHHHH-HHhCCCCc
Q 003163 487 ILSSE----YAKVPWFD----------------------SVFADIGDE---QSLSQSLSTFSGHLKQIGNI-ISQSTSQS 536 (843)
Q Consensus 487 vpa~~----~~~i~~~~----------------------~i~~~ig~~---q~i~~~lstfS~~~~~l~~i-l~~a~~p~ 536 (843)
++... ...+.+.+ .++..+|.. ..+.....++|+++++...| .+++.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 11100 00011111 123334442 23455667888887665555 56789999
Q ss_pred EEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 537 LVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 537 LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||||||||+|||+.....+. .++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 189 lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~t-vi~itHdl~~~~~~adri~vl~~G~i~~~ 250 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMG-VIFITHDMGVVAEIADRVLVMYQGEAVET 250 (623)
T ss_pred EEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEeeCCeeccc
Confidence 99999999999997666664 67777765 4887 99999998776 79999999999998653
No 292
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=172.25 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=103.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||||||||+++|+++... ...|. ++|. ..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q-~~ 115 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ-RP 115 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEec-CC
Confidence 45689999999 89999999999999999999999776421 11221 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCchh----hHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~~q----~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
..+ .+.+++. ..++..+ .+......+|+++++ +..+.+++.+|+++|||||
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 195 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 000 1112211 1111110 112233456766554 4555567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|+|+|+.....+ ..++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 196 t~gLD~~~~~~l-~~~L~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 196 TSALDPISTLKI-EELITELKS-KYT-IVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred cccCCHHHHHHH-HHHHHHHHh-CCe-EEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999766666 456666665 676 99999998775 68999999999998754
No 293
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=169.28 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=102.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+||||+||||||++|+++.... ..|. +++. ..
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q-~~ 97 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHP-KP 97 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEec-CC
Confidence 34689999999 899999999999999999999998764321 1121 0111 00
Q ss_pred cc--cchHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 493 AK--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
.. ..+.+++. ..++.. .........+|+++++. ..+.+++.+|+++|||||
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 11111111 011110 01122334677766555 444567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceee-----eEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFEN-----ACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~n-----g~v~fd 598 (843)
|+|+|+.....+. .++..+.. .+.| ||++||+.+.. .+|+++..+.+ |.+...
T Consensus 178 ~~~LD~~~~~~l~-~~l~~l~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 178 CFGLDPIASMKVE-SLIQSLRLRSELT-MVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred CccCCHHHHHHHH-HHHHHHHHhCCCE-EEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999997666664 55555554 4776 99999998776 68999999998 888765
No 294
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.69 E-value=7.7e-16 Score=184.60 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=98.4
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------cccccc-cccc-chHHH------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE-YAKV-PWFDS------ 500 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~-~~~i-~~~~~------ 500 (843)
+++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. +++... .... .+++.
T Consensus 14 ~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~ 92 (635)
T PRK11147 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE 92 (635)
T ss_pred CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence 346789999999 889999999999999999999997754221 121 111100 0000 00000
Q ss_pred -------------------------------------------------HHhhcCchhhHhhhhhhhhHHhHHHH-HHHH
Q 003163 501 -------------------------------------------------VFADIGDEQSLSQSLSTFSGHLKQIG-NIIS 530 (843)
Q Consensus 501 -------------------------------------------------i~~~ig~~q~i~~~lstfS~~~~~l~-~il~ 530 (843)
++..+|.. ....+++||+++++.. .+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAra 170 (635)
T PRK11147 93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRA 170 (635)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHH
Confidence 01111111 1234567888776554 4456
Q ss_pred hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 531 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 531 ~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
++.+|+||||||||+|||+.....+. .++ .+.+.+ ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 L~~~P~lLLLDEPt~~LD~~~~~~L~-~~L---~~~~~t-vlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 171 LVSNPDVLLLDEPTNHLDIETIEWLE-GFL---KTFQGS-IIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred HhcCCCEEEEcCCCCccCHHHHHHHH-HHH---HhCCCE-EEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 78999999999999999996655443 333 334566 99999999887 588888888888774
No 295
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.69 E-value=1.3e-16 Score=167.71 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=66.8
Q ss_pred HhhhhhhhhHHhHHHHHHH-HhCCCC--cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 511 LSQSLSTFSGHLKQIGNII-SQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~il-~~a~~p--~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
.....+++|+++++...++ +++.+| +++||||||+|+|+.....+. .++..+.+.|.+ +|++||++++..+|+++
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~-~~l~~~~~~g~t-ii~itH~~~~~~~~d~i 208 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI-ETLKRLRDLGNT-VLVVEHDEDTIRAADHV 208 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEEeCHHHHHhCCEE
Confidence 4556677888776655554 556666 699999999999998777775 455666777887 99999999888899999
Q ss_pred cce------eeeEEEEe
Q 003163 588 DFF------ENACMEFD 598 (843)
Q Consensus 588 ~~v------~ng~v~fd 598 (843)
..+ .+|.+..+
T Consensus 209 ~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 209 IDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred EEeCCCccccCCEEEec
Confidence 888 77777653
No 296
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.68 E-value=1.2e-16 Score=158.13 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=114.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----------------cccccccccccc------cccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----------------AKSGLHILSSEY------AKVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----------------~q~G~~vpa~~~------~~i~ 496 (843)
|...|+..+++. ..|.++.|+|.+|||||||||||..+... ...|-.+|+... +.++
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~ 96 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG 96 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhh
Confidence 567799999999 89999999999999999999999644322 112333333110 0111
Q ss_pred h-------------H----------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEE
Q 003163 497 W-------------F----------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLL 540 (843)
Q Consensus 497 ~-------------~----------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLL 540 (843)
+ . ...+..+|..+....+...+||+.++.+.| .+++.+|.++|+
T Consensus 97 mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLF 176 (256)
T COG4598 97 MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLF 176 (256)
T ss_pred HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEee
Confidence 1 1 112445566666666667788777666555 467899999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 598 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd 598 (843)
|||||+|||+-..... .++..|.+.|.| .+++||.+.+++ .+.+++.+.+|.++..
T Consensus 177 DEPTSALDPElVgEVL-kv~~~LAeEgrT-Mv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 177 DEPTSALDPELVGEVL-KVMQDLAEEGRT-MVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHhCCe-EEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999996666664 677889999998 899999999995 7788888999988754
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=1.5e-16 Score=206.14 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=112.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc--------------cccccccc--cccchH-
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--------------LHILSSEY--AKVPWF- 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G--------------~~vpa~~~--~~i~~~- 498 (843)
+.++++++|+ ..|++++|+||||||||||||+|++...... .| .++|.... ..+...
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 5799999999 8999999999999999999999976532211 00 12222100 001111
Q ss_pred --------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 499 --------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 499 --------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
+.++..++..+......+++|++++|... +.+++.+|++|||||||+|+||.....+ +
T Consensus 2032 ~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l-~ 2110 (2272)
T TIGR01257 2032 HLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML-W 2110 (2272)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH-H
Confidence 11233445555555566788988776654 4567899999999999999999766666 5
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 558 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.++..+.+.|.+ ||+|||+++.. .+|+++..+.+|++...+
T Consensus 2111 ~lL~~l~~~g~T-IILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2111 NTIVSIIREGRA-VVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 677777777887 99999998776 689999999999997654
No 298
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.68 E-value=1.9e-16 Score=169.34 Aligned_cols=152 Identities=12% Similarity=-0.003 Sum_probs=101.0
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i--~~ 497 (843)
..++.+++|. .+|++++|+||||+||||||++|+++... ..|. +++. ....+ .+
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q-~~~l~~~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQ-DPILFSGSI 111 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECC-CCcccccHH
Confidence 4689999999 89999999999999999999999765321 1121 1111 00000 00
Q ss_pred HHH--------------HHhhcCchhhHh-----------hhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 498 FDS--------------VFADIGDEQSLS-----------QSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 498 ~~~--------------i~~~ig~~q~i~-----------~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.++ .....+....+. .....+|++++ ++..+.+++.+|+++||||||+|+|+..
T Consensus 112 ~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 112 RFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 000 011111111111 11235776554 4555567789999999999999999976
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+ ..++..+. .+.| +|++||+.+....|+++..+.+|.+..+
T Consensus 192 ~~~l-~~~l~~~~-~~~t-iii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 192 ENIL-QKVVMTAF-ADRT-VVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred HHHH-HHHHHHhc-CCCE-EEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 6555 45555554 4776 9999999988877999999999998754
No 299
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-16 Score=169.30 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=100.8
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc----cccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~-----------------------~vpa~~~ 492 (843)
+..++.+++|+ .+|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 35689999999 899999999999999999999998764311 1221 1111000
Q ss_pred -cccchHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCC
Q 003163 493 -AKVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 -~~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~ 544 (843)
......+++. ..++. ..........+|+++++ +..+.+++.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0001111111 11111 01122233457766655 45555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee-----eeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE-----NACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~-----ng~v~fd 598 (843)
+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+. +|.+...
T Consensus 179 ~~LD~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 179 SALDPIATMKVE-ELIHSLRS-ELT-IAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 999997766664 55556655 566 99999998776 6888888886 4887654
No 300
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.4e-16 Score=167.92 Aligned_cols=156 Identities=18% Similarity=0.196 Sum_probs=101.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------cccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 491 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~ 491 (843)
++..++++++|+ ..|++++|+||||+|||||+|+|+++... ...|. ++|...
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 356789999999 89999999999999999999999766422 01121 111100
Q ss_pred c-cccchHHHH--------------------HhhcCchhh----HhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 492 Y-AKVPWFDSV--------------------FADIGDEQS----LSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 492 ~-~~i~~~~~i--------------------~~~ig~~q~----i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
. .....++++ +..++.... .......+|+++++. ..+.+++.+|+++||||||+
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0 001111221 111121111 112234577766554 44557789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee--------eeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE--------NACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~--------ng~v~fd 598 (843)
|||+.....+. .++..+.+ +.+ +|++||+.+.. .+|+++..+. +|.+...
T Consensus 179 gLD~~~~~~l~-~~l~~~~~-~~t-ii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 179 ALDPIATRRVE-ELMVELKK-DYT-IALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99997777665 55666654 666 99999998865 6899888885 6777643
No 301
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=173.19 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=101.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++... +..|. ++|....
T Consensus 57 ~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 45689999999 89999999999999999999999876421 11221 1121000
Q ss_pred -cccchHHHHH----------------------------------hhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhC
Q 003163 493 -AKVPWFDSVF----------------------------------ADIGD----EQSLSQSLSTFSGHLKQI-GNIISQS 532 (843)
Q Consensus 493 -~~i~~~~~i~----------------------------------~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a 532 (843)
....+.+++. ..++. ...+......+|+++++. ..+.+++
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 0001111111 00111 011123345677766554 5555678
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccc-cceeeeEEEEe
Q 003163 533 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSN-DFFENACMEFD 598 (843)
Q Consensus 533 ~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~-~~v~ng~v~fd 598 (843)
.+|+|||||||++|||+.....+ ..++..+.+ +.+ +|++||+.+.. .+|+++ ..+.+|.+..+
T Consensus 217 ~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~-~~t-iiivtH~~~~i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 217 VDPEVILMDEPASALDPIATSKI-EDLIEELAE-EYT-VVVVTHNMQQAARISDQTAVFLTGGELVEY 281 (305)
T ss_pred cCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc-CCE-EEEEEcCHHHHHHhcCEEEEEecCCEEEEe
Confidence 99999999999999999766666 456666665 466 99999999876 678876 45688988755
No 302
>PLN03073 ABC transporter F family; Provisional
Probab=99.67 E-value=1.6e-16 Score=191.88 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=104.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------ccccccccccc-------------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEYAKVP------------- 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~~~~i~------------- 496 (843)
+..++.+++|+ ..|++++|+||||||||||||+|+++.... .|. |++......+.
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS-SGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CceEEECCceeEEEEeccccccCCcchhHHHHHHHhc
Confidence 34689999999 889999999999999999999997653221 111 22211000000
Q ss_pred ------hHHHHHhhcCchh-hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 497 ------WFDSVFADIGDEQ-SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 497 ------~~~~i~~~ig~~q-~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
....++..++... ......+.+|+++++...+ .+++.+|++|||||||+|||+.....+. +.+.+.+.
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~----~~L~~~~g 675 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI----QGLVLFQG 675 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHHHcCC
Confidence 0112344455543 3455677888877665544 5678999999999999999997666554 33344345
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 569 LLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 569 t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
+ ||++|||.++. .+|+++..+.+|.+.
T Consensus 676 t-vIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 676 G-VLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 6 99999998877 589999999999876
No 303
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.8e-16 Score=168.61 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=102.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---cccc-------------------------ccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-------------------------HILSS 490 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~-------------------------~vpa~ 490 (843)
++.++.+++|+ ..|++++|+|||||||||||++|+++.-. . ..|. ++|.
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q- 106 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ- 106 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc-
Confidence 45799999999 89999999999999999999999875421 0 1121 1111
Q ss_pred ccccc--chHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEe
Q 003163 491 EYAKV--PWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLD 541 (843)
Q Consensus 491 ~~~~i--~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLD 541 (843)
....+ .+.+++. ..++. .+.+......+|+++++. ..+.+++.+|+++|||
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00000 1111111 01111 011122334577666554 4555678999999999
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 542 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 542 EP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||+|+|+.....+. .++..+.. +.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 187 EPt~gLD~~~~~~l~-~~l~~l~~-~~t-iiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 187 EPTSALDPIATASIE-ELISDLKN-KVT-ILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHh-CCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999997776665 56666665 566 99999998876 68999999999998654
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=9.9e-17 Score=189.48 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=100.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------ccccccc--cccchHHHHH-----
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFDSVF----- 502 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~~--~~i~~~~~i~----- 502 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+...+.+.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-EGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence 46799999999 899999999999999999999997654221 121 2232110 0111122111
Q ss_pred ----------------------------------------------------hhcCchhhHhhhhhhhhHHhHHHH-HHH
Q 003163 503 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHLKQIG-NII 529 (843)
Q Consensus 503 ----------------------------------------------------~~ig~~q~i~~~lstfS~~~~~l~-~il 529 (843)
..+|.. ......+++|+++++.. .+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~ 176 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 011111 12344567888776554 445
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
+++.+|++|||||||+|||+.....+. .++.. .+.+ ||++||+.++. .+|+++..+.+|.+.
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~---~~~t-viiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHD---YPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHh---CCCe-EEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 678999999999999999996666553 44443 3456 99999999877 588888888888764
No 305
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.2e-16 Score=165.66 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=101.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--h--ccccc-----------------------ccccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~--~q~G~-----------------------~vpa~~~ 492 (843)
++.++.+++|+ ..|++++|+||||+||||||++|+++.- . ...|. ++|. ..
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q-~~ 93 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ-KP 93 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEec-CC
Confidence 45689999999 8999999999999999999999976531 1 12221 1111 00
Q ss_pred ccc--chHHHHH----------------------hhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecC
Q 003163 493 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP 543 (843)
..+ ...+++. ..++.. .........+|+++++ +..+.+++.+|+++|||||
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 173 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 000 1111111 111110 1112233456765554 5555677899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
++|+|+.....+. .++..+.+ +.+ ||++||+.+.. .+++++..+.+|++..+.
T Consensus 174 ~~gLD~~~~~~l~-~~l~~~~~-~~t-iii~sh~~~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 174 CSALDPISTTKIE-DLIHKLKE-DYT-IVIVTHNMQQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CCe-EEEEECCHHHHHhhcCEEEEEECCeEEEeC
Confidence 9999997777765 55556654 676 99999998766 567777778999997653
No 306
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=2.3e-16 Score=155.33 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=118.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--------c-----------------cc------ccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------K-----------------SG------LHI 487 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--------q-----------------~G------~~v 487 (843)
+.-.|+.+++|. ..|+.++|+||+||||||||-.++++.... + .| ..+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 345689999999 888999999999999999999987653211 0 11 011
Q ss_pred cc---ccccccc-------------hHHHHHhhcCchhhHhhhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 488 LS---SEYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 488 pa---~~~~~i~-------------~~~~i~~~ig~~q~i~~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
|. -++..+| .....+..+|..+.+..+..++|++ +++++.+.+++..|++|+-||||.+||..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 10 0111111 1123456667777777777788864 55666667789999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+..++..+...-++.|.| .+++|||..++.-|++...+.+|.++-|
T Consensus 181 Tg~~iaDLlF~lnre~G~T-lVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 181 TGDKIADLLFALNRERGTT-LVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHHHHHhhhcCce-EEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999988777777788987 8999999999999999999999998643
No 307
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.3e-16 Score=157.81 Aligned_cols=136 Identities=23% Similarity=0.257 Sum_probs=92.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------ccccc----------------cccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------HILSS----------------EYAKVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------~vpa~----------------~~~~i~ 496 (843)
+..+++.+++|. ..|+++.|+||||+|||||||+|+++.-... |- .++.. -...+.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~-G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA-GEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC-CeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 457899999999 8999999999999999999999976643221 11 11000 011222
Q ss_pred hHHHH------------------HhhcCchhhHhhhhhhhhHHhHHHHHHHHh-CCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 497 WFDSV------------------FADIGDEQSLSQSLSTFSGHLKQIGNIISQ-STSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 497 ~~~~i------------------~~~ig~~q~i~~~lstfS~~~~~l~~il~~-a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
.++++ +..+|.....+....++|.++++...+..+ +..++|+|||||++++|. ++.++..
T Consensus 92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk-~g~a~l~ 170 (209)
T COG4133 92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK-EGVALLT 170 (209)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH-HHHHHHH
Confidence 22221 222333333344556778777777666654 789999999999999998 6666666
Q ss_pred HHHHHHHhcCCeEEEEEccch
Q 003163 558 SLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~ 578 (843)
.++..-...|.. ||+|||..
T Consensus 171 ~l~~~H~~~GGi-VllttHq~ 190 (209)
T COG4133 171 ALMAAHAAQGGI-VLLTTHQP 190 (209)
T ss_pred HHHHHHhcCCCE-EEEecCCc
Confidence 776666677775 99999974
No 308
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=1.7e-16 Score=169.86 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=99.3
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhccccccc------------ccc--------------------
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------LSS-------------------- 490 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v------------pa~-------------------- 490 (843)
.++.++++-.+|++++|+||||||||||||+|+++... ..|... ...
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKP-NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 47778874378899999999999999999999766322 122210 000
Q ss_pred -cccccc------------------hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChh
Q 003163 491 -EYAKVP------------------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 491 -~~~~i~------------------~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.....+ ....++..++..+.......++|+++++...+ .+++.+|+++||||||+|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 000000 01112334444444555666788776655544 5668899999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACM 595 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~~~~v~ng~v 595 (843)
....+. .++..+.+.+.+ ||++||+.++.. +|+++..+ +|.+
T Consensus 174 ~~~~l~-~~l~~l~~~~~t-IIiiSHd~~~~~~~ad~i~~l-~~~~ 216 (255)
T cd03236 174 QRLNAA-RLIRELAEDDNY-VLVVEHDLAVLDYLSDYIHCL-YGEP 216 (255)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEE-CCCC
Confidence 777665 566667766787 999999998875 77777655 3433
No 309
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.5e-16 Score=168.02 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=100.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----cccccc-----------------------cccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGLH-----------------------ILSSEY 492 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~~-----------------------vpa~~~ 492 (843)
+..++.+++|+ ..|++++|+||||+|||||||+|+++... ...|.. ++. ..
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 100 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ-KP 100 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc-CC
Confidence 45689999999 89999999999999999999999865321 112211 111 00
Q ss_pred cc--cchHHHHH--------------------hhcCch----hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCC
Q 003163 493 AK--VPWFDSVF--------------------ADIGDE----QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 493 ~~--i~~~~~i~--------------------~~ig~~----q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~s 545 (843)
.. ..+.+++. ..++.. .........+|+++++ +..+.+++.+|++|||||||+
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 180 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 00 01111111 111110 0112233457766655 455556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee---------eeEEEEe
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE---------NACMEFD 598 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~---------ng~v~fd 598 (843)
|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+. +|.+...
T Consensus 181 ~LD~~~~~~l~-~~L~~~~~-~~t-vi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 181 ALDPISTLRIE-ELMHELKE-QYT-IIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99997777764 56666665 466 99999998765 7888888877 5776543
No 310
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=1.4e-16 Score=188.14 Aligned_cols=149 Identities=14% Similarity=0.043 Sum_probs=99.5
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc----------ccccccc--cccchHHHHH-----
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFDSVF----- 502 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~----------~vpa~~~--~~i~~~~~i~----- 502 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .|. ++|.... ..+...+.+.
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~ 95 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF-NGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAE 95 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHH
Confidence 45789999999 899999999999999999999997654221 121 2222110 0111111110
Q ss_pred ----------------------------------------------------hhcCchhhHhhhhhhhhHHhHHHHHH-H
Q 003163 503 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHLKQIGNI-I 529 (843)
Q Consensus 503 ----------------------------------------------------~~ig~~q~i~~~lstfS~~~~~l~~i-l 529 (843)
..++.. ......+++|+++++...+ .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~ 174 (552)
T TIGR03719 96 IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCR 174 (552)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 001110 1233456788877655544 5
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
+++.+|++|||||||+|||+.....+. .++ .+.+.+ ||++||+.++. .+|+++..+.+|.+.
T Consensus 175 al~~~p~lLLLDEPt~~LD~~~~~~l~-~~L---~~~~~t-vIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 175 LLLSKPDMLLLDEPTNHLDAESVAWLE-QHL---QEYPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred HHhcCCCEEEEcCCCCCCChHHHHHHH-HHH---HhCCCe-EEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 678999999999999999996666554 333 333456 99999998877 588888888888764
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=99.66 E-value=3.9e-16 Score=185.08 Aligned_cols=150 Identities=19% Similarity=0.045 Sum_probs=104.9
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------cccccccc--cccch---------------
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY--AKVPW--------------- 497 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~--~~i~~--------------- 497 (843)
.+.+++++ ..|++++|+||||+|||||||+|+++.... .| .++|.... ....+
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 46777888 889999999999999999999997653221 11 12232110 00111
Q ss_pred -HHHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEE
Q 003163 498 -FDSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIAT 574 (843)
Q Consensus 498 -~~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlit 574 (843)
...++..++..+.....+.++|+++++.. .+.+++.+|+++||||||+|||+.....+. .++..+.+ .|.+ +|++
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~t-viiv 510 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREAT-ALVV 510 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCE-EEEE
Confidence 12344556666667777888998776555 445678999999999999999997777775 55666655 4787 9999
Q ss_pred ccchhHH-hhhccccceeeeEEEE
Q 003163 575 THHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 575 THd~el~-~~a~~~~~v~ng~v~f 597 (843)
|||.++. .+|+++..+.+ .+..
T Consensus 511 sHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 511 DHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred eCCHHHHHHhCCEEEEEcC-ccee
Confidence 9999887 57888776654 4443
No 312
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.66 E-value=3.1e-16 Score=185.13 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=100.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------cccccccc---cccchH--------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY---AKVPWF-------- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~---~~i~~~-------- 498 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ......
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 45789999999 899999999999999999999997653211 11 12232100 001111
Q ss_pred -----------HHHHhhcCchh-hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 499 -----------DSVFADIGDEQ-SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 499 -----------~~i~~~ig~~q-~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
..++..++... .....++++|+++++...+ .+++.+|+++||||||+|||+.....+. .++..+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~-- 489 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF-- 489 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC--
Confidence 12334455532 3456678899877665544 5678999999999999999997766664 444433
Q ss_pred cCCeEEEEEccchhHH-hhhccccceeee
Q 003163 566 SGSLLTIATTHHGELK-TLKYSNDFFENA 593 (843)
Q Consensus 566 ~g~t~vlitTHd~el~-~~a~~~~~v~ng 593 (843)
+.+ ||++|||.++. .+|+++..+.++
T Consensus 490 -~~~-viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 490 -AGC-AVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred -CCe-EEEEeCCHHHHHHhCCEEEEEECC
Confidence 346 99999999877 578888777653
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=3.3e-16 Score=202.97 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=112.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc--------------cccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G--------------~~vpa~~~--~~i~~~ 498 (843)
++.+.++++++ ..|++++|+||||||||||||+|+++..... .| .++|.... ..+.+.
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 46789999999 8999999999999999999999976542211 01 12222100 001111
Q ss_pred ---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
..++..+|..+......+++|+++++...+ .+++.+|++|||||||+|+||.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 123344555555556667889888766555 567899999999999999999777776
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.++..+. .|.+ ||+|||+++.+ .+|+++..+.+|.+...+
T Consensus 1101 ~~lL~~l~-~g~T-IIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1101 WDLLLKYR-SGRT-IIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred HHHHHHHh-CCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 56666665 4777 99999999887 589999999999987654
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=4.3e-16 Score=184.09 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=101.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------ccccccc-c--cccchHH-------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSE-Y--AKVPWFD------- 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~-~--~~i~~~~------- 499 (843)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .|+|... . ..+..++
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 45789999999 899999999999999999999997653211 11 1233211 0 0111111
Q ss_pred ------------HHHhhcCchh-hHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 500 ------------SVFADIGDEQ-SLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 500 ------------~i~~~ig~~q-~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
.++..++... ......+++|+++++... +.+++.+|++|||||||+|||+.....+. .++..+
T Consensus 415 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~-- 491 (556)
T PRK11819 415 IIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE-EALLEF-- 491 (556)
T ss_pred cccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHHHhC--
Confidence 2233445432 345567788987766554 45678999999999999999997766664 444433
Q ss_pred cCCeEEEEEccchhHH-hhhccccceee-eEE
Q 003163 566 SGSLLTIATTHHGELK-TLKYSNDFFEN-ACM 595 (843)
Q Consensus 566 ~g~t~vlitTHd~el~-~~a~~~~~v~n-g~v 595 (843)
+.+ ||++|||.++. .+|+++..+.+ |.+
T Consensus 492 -~~t-vi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 492 -PGC-AVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred -CCe-EEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 346 89999998876 58888877765 444
No 315
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.1e-16 Score=170.83 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=105.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh----ccccc-----------------------cccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 491 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~----~q~G~-----------------------~vpa~~ 491 (843)
+...++++++|+ ..|++++|+|||||||||||++|.++... ...|. ++|...
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 345699999999 89999999999999999999999766421 11121 122100
Q ss_pred c-cccchHHHHH----------------------hhcCc----hhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecC
Q 003163 492 Y-AKVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEI 543 (843)
Q Consensus 492 ~-~~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP 543 (843)
. ....+.+++. ...+. ...+......+|+++++. ..+.+++.+|++||||||
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 0 0001112221 11111 112234445677766555 444567899999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|+|+|+.....+ ..++..+.+ ++| +|++||+++.. .+|+++..+.+|.+...+
T Consensus 253 ts~LD~~~~~~i-~~~i~~l~~-~~T-ii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 253 TSALDPIATAKI-EELILELKK-KYS-IIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred cccCCHHHHHHH-HHHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999777765 455666655 576 99999999886 579999999999987653
No 316
>PLN03073 ABC transporter F family; Provisional
Probab=99.65 E-value=3.9e-15 Score=179.85 Aligned_cols=80 Identities=18% Similarity=0.070 Sum_probs=61.2
Q ss_pred hhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccc
Q 003163 512 SQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDF 589 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~ 589 (843)
.....++|+++++...+ .+++.+|++|||||||+|||+.....+. +.|.+.+.+ +|+||||.++. .+|+++..
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~----~~L~~~~~t-viivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE----TYLLKWPKT-FIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH----HHHHHcCCE-EEEEECCHHHHHHhCCEEEE
Confidence 34567889877665555 4668899999999999999996655443 334445777 99999998877 57899988
Q ss_pred eeeeEEE
Q 003163 590 FENACME 596 (843)
Q Consensus 590 v~ng~v~ 596 (843)
+.+|.+.
T Consensus 414 l~~g~i~ 420 (718)
T PLN03073 414 LHGQKLV 420 (718)
T ss_pred EECCEEE
Confidence 8888774
No 317
>PLN03211 ABC transporter G-25; Provisional
Probab=99.65 E-value=5.8e-16 Score=185.79 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=108.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-ccc-----------------cccccccc--cccchH
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG-----------------LHILSSEY--AKVPWF 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q~G-----------------~~vpa~~~--~~i~~~ 498 (843)
+++.+++++++. .+|++++|+|||||||||||++|++..... ..| .+++.... ..+.+.
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 356799999999 999999999999999999999998764221 112 12221100 001111
Q ss_pred HH------------------------HHhhcCchhhH-----hhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCC
Q 003163 499 DS------------------------VFADIGDEQSL-----SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 499 ~~------------------------i~~~ig~~q~i-----~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
+. ++..+|..+.. ....+.+|+++++ +..+.+++.+|+++||||||+|||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 11 12222322211 1123457776654 555567789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhhhccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~e--l~~~a~~~~~v~ng~v~fd~ 599 (843)
+.....+. .++..+.+.|.| ||+|||++. +..+++++..+.+|++.+.+
T Consensus 239 ~~~~~~l~-~~L~~l~~~g~T-vI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 239 ATAAYRLV-LTLGSLAQKGKT-IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred HHHHHHHH-HHHHHHHhCCCE-EEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 97777665 566677777887 999999975 46889999999999998765
No 318
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=8.3e-16 Score=163.95 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=115.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc--------------------------------c
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------------------H 486 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~--------------------------------~ 486 (843)
+-..-.++++|+ +.|+|++|+|=+|||||||+|++..+.-... |. .
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~-G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR-GEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC-ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 334567899999 9999999999999999999999964432111 10 0
Q ss_pred cccc---cccccc-------------hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCCh
Q 003163 487 ILSS---EYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 487 vpa~---~~~~i~-------------~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp 549 (843)
.|-. ++..++ .....+...|..+.-......+||+|++...++ +++++|++||+|||||+|||
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDP 197 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDP 197 (386)
T ss_pred ccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcCh
Confidence 0100 000000 011234556666666677788899998877665 56899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.-+..+-..+++.-.+.+.| |+|+|||.+.+ ++.+++..+.+|.+...
T Consensus 198 LIR~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 198 LIRTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred HHHHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEEEecCCeEEEe
Confidence 99888877788766667887 99999998777 79999999999998754
No 319
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=7e-16 Score=176.00 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=116.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------ccc--------cccc-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL--------HILS- 489 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~--------~vpa- 489 (843)
++..++++++|+ ..|++++|+|.||+|||||+|+|+++.-... .|. .+|.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 456799999999 9999999999999999999999976532111 010 0110
Q ss_pred ---------ccccc-cchH---------HHHHhhcCchhhHhhhhhhhhHHhHHHHHHHH-hCCCCcEEEEecCCCCCCh
Q 003163 490 ---------SEYAK-VPWF---------DSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 490 ---------~~~~~-i~~~---------~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~-~a~~p~LLLLDEP~sGlDp 549 (843)
.+... .+++ ..++..++........+.++|...+|+..|+. +..++.+|||||||+.|+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 00000 1111 12345555543466677788888888888875 4668889999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~-el~~~a~~~~~v~ng~v~fd 598 (843)
.+...+. .+++.|++.|.+ ||++||.+ ++..+||++..+.+|.+.-+
T Consensus 179 ~E~~~Lf-~~ir~Lk~~Gv~-ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 179 KETERLF-DLIRRLKAQGVA-IIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHH-HHHHHHHhCCCE-EEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999986 678889999998 99999986 45589999999999997654
No 320
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=1e-15 Score=149.25 Aligned_cols=159 Identities=20% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccccc----------------ccch-----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA----------------KVPW----- 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~----------------~i~~----- 497 (843)
|...++.||+|+ +.|+.++++||+|+|||||||++.++.... +|-..-+.... .+++
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~-sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC-CCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 456789999999 889999999999999999999997654332 22211110000 0010
Q ss_pred --------HHH----------------------HHhhcCchhhHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCC
Q 003163 498 --------FDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 498 --------~~~----------------------i~~~ig~~q~i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sG 546 (843)
..+ ++..+...+..+...-.+||+. ++++.+.+++.+|.++|+||||++
T Consensus 92 ~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaa 171 (242)
T COG4161 92 NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccc
Confidence 111 1111111222222222345555 455555677899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEeccc
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEVK 601 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~~ 601 (843)
|||+-...+ ..|++.|...|.| -+++||..+++ ..|.++..+++|++...+..
T Consensus 172 ldpeitaqv-v~iikel~~tgit-qvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 172 LDPEITAQI-VSIIKELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred cCHHHHHHH-HHHHHHHHhcCce-EEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 999655555 5789999999998 89999999988 58999999999999866543
No 321
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.1e-15 Score=153.48 Aligned_cols=148 Identities=24% Similarity=0.319 Sum_probs=108.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc-----cccc--cccc-------ccccchH--------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHI--LSSE-------YAKVPWF-------- 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~-----G~~v--pa~~-------~~~i~~~-------- 498 (843)
..++.+++++ .+|++++++||+||||||||++++++.-..+. |..+ |..+ ..-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 4588999999 88999999999999999999999877654331 1111 1111 1122222
Q ss_pred ----------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 499 ----------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 499 ----------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
.+++..+|.++.-...+-.+||+|++...+. +++-+|+++|||||++.+|...+..+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 2234445555555666677899998877775 56889999999999999999998888777888
Q ss_pred HHHhcCCeEEEEEccchhHHh-hhccccce
Q 003163 562 AFAESGSLLTIATTHHGELKT-LKYSNDFF 590 (843)
Q Consensus 562 ~L~~~g~t~vlitTHd~el~~-~a~~~~~v 590 (843)
...+.|.. ++++||+.+.+- +|++.+.+
T Consensus 178 lw~~tgk~-~lliTH~ieEAlflatrLvvl 206 (259)
T COG4525 178 LWQETGKQ-VLLITHDIEEALFLATRLVVL 206 (259)
T ss_pred HHHHhCCe-EEEEeccHHHHHhhhheeEEe
Confidence 88888987 999999998885 45544443
No 322
>PRK13409 putative ATPase RIL; Provisional
Probab=99.63 E-value=7.8e-16 Score=182.55 Aligned_cols=147 Identities=20% Similarity=0.168 Sum_probs=101.3
Q ss_pred ccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhccccccc------------cc-----------ccccc----
Q 003163 442 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------LS-----------SEYAK---- 494 (843)
Q Consensus 442 ~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v------------pa-----------~~~~~---- 494 (843)
.+++.+++.-.+|++++|+||||+|||||||+|+++.... .|.+. .. .....
T Consensus 87 ~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~-~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPN-LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCC-CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 4678888833889999999999999999999997653221 22211 00 00000
Q ss_pred c---c---------------------hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCCh
Q 003163 495 V---P---------------------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 495 i---~---------------------~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp 549 (843)
. . ....++..++........++++|+++++...+ .+++.+|+++||||||+|||+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 0 0 01123344555555566778889877665554 566899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
.....+. .++..+.+ |.+ ||++||+.++. .+++++..+.+
T Consensus 246 ~~~~~l~-~~i~~l~~-g~t-vIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 246 RQRLNVA-RLIRELAE-GKY-VLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHH-HHHHHHHC-CCE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 7777775 56677777 887 99999998876 57777766644
No 323
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.63 E-value=9.2e-16 Score=169.70 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=69.0
Q ss_pred cCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-
Q 003163 505 IGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK- 581 (843)
Q Consensus 505 ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~- 581 (843)
++..........++|+++++... +.+++.+|+++||||||+|||+.....+. .++..+.+ .|.| +|++||+.+..
T Consensus 88 ~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~t-iiivTHd~~e~~ 165 (325)
T TIGR01187 88 VQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGIT-FVFVTHDQEEAM 165 (325)
T ss_pred cCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHH
Confidence 34433444555678877765544 45678999999999999999997777765 45555554 4787 99999998765
Q ss_pred hhhccccceeeeEEEEe
Q 003163 582 TLKYSNDFFENACMEFD 598 (843)
Q Consensus 582 ~~a~~~~~v~ng~v~fd 598 (843)
.+|+++..+.+|.+...
T Consensus 166 ~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 166 TMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HhCCEEEEEECCEEEEE
Confidence 68999999999998654
No 324
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=181.66 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=110.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------------------cccccccccccc--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEYAK-- 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------------------~G~~vpa~~~~~-- 494 (843)
..++.+++|+ .+|++++|+||||+|||||||+|+++..... ...+++. ....
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q-~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQ-RYHLLS 99 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeC-CcccCC
Confidence 4689999999 8999999999999999999999976532211 0112221 1110
Q ss_pred -cchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 495 -VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 -i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+...+ .++..++....+......+|+++++. ..+.+++.+|+++|||||++|||+..
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 11111 12223344444455556788766554 45556789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .+++.+.+.|.+ +|++||+.++...|++...+.+|++..+.
T Consensus 180 ~~~l~-~ll~~l~~~g~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 180 GEEVM-AILHQLRDRGHT-VIIVTHDPQVAAQAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence 77664 566777767887 99999999988889999999999997654
No 325
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=1.4e-15 Score=152.65 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=105.0
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------------cccc----ccccccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLH----ILSSEYA 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------------~G~~----vpa~~~~ 493 (843)
++..++++++|. ..|+.-+|+||||+||||+|..|.+-..... .|.- .|. -..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt-Vfe 94 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT-VFE 94 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe-ehh
Confidence 567789999999 8999999999999999999999965432211 1100 000 000
Q ss_pred ccc--------------hH---------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecC
Q 003163 494 KVP--------------WF---------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEI 543 (843)
Q Consensus 494 ~i~--------------~~---------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP 543 (843)
.+. +| +.++..+|..+.....-+.+|-+.++...|- -.+++|.|||||||
T Consensus 95 ~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEP 174 (249)
T COG4674 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174 (249)
T ss_pred hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCc
Confidence 011 11 1223333333333334445565555555553 45789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.+|+...+....+ .++..++. +++ |+++.||++|. .+|+++-.+..|++.-.
T Consensus 175 vAGMTd~Et~~ta-eLl~~la~-~hs-ilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 175 VAGMTDAETEKTA-ELLKSLAG-KHS-ILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cCCCcHHHHHHHH-HHHHHHhc-Cce-EEEEeccHHHHHHhhheeEEEeccceeec
Confidence 9999888888876 56666665 455 99999999999 58998888888888643
No 326
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=174.75 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=110.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc---cccc-------------------------ccccccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------------HILSSEY 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~---q~G~-------------------------~vpa~~~ 492 (843)
..+..|+||+ ..|++++|+|.+||||||+.++|.++.-.. ..|. +++....
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 3589999999 999999999999999999999985432211 0111 1111111
Q ss_pred cccc----hH----------------------HHHHhhcCchhhHhh--hhhhhhHHhHHHHHH-HHhCCCCcEEEEecC
Q 003163 493 AKVP----WF----------------------DSVFADIGDEQSLSQ--SLSTFSGHLKQIGNI-ISQSTSQSLVLLDEI 543 (843)
Q Consensus 493 ~~i~----~~----------------------~~i~~~ig~~q~i~~--~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP 543 (843)
+.+. +- .+++..+|..+.... ....|||+|++.+.| ++++.+|+|||+|||
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 1110 00 123444555444443 667899988766555 567999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
|++||+.....+. .+++.+. +.|.+ +|++|||+++. .+||++..+.+|.+...+
T Consensus 182 TTaLDvt~q~qIL-~llk~l~~e~g~a-~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 182 TTALDVTTQAQIL-DLLKDLQRELGMA-VLFITHDLGVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred ccccCHHHHHHHH-HHHHHHHHHcCcE-EEEEcCCHHHHHHhcCeEEEEECCEEEEec
Confidence 9999997777775 4555555 56887 99999999988 599999999999997654
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.62 E-value=2.7e-15 Score=176.92 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccc----c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA----K 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~----~ 494 (843)
+..++++++++ ++|+.++|+||||||||||+++|+++.-. ..|. ++|. +.. .
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~t 412 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLFSAVFT-DFHLFDQL 412 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhheEEEec-ChhHHHHh
Confidence 35689999999 89999999999999999999999764322 1121 1111 000 0
Q ss_pred c---------chHHHHHhhcCchhhHhhh-----hhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 495 V---------PWFDSVFADIGDEQSLSQS-----LSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 495 i---------~~~~~i~~~ig~~q~i~~~-----lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
+ .........++....+... -..+|++++ ++..+.+++.+|+++||||||+|+|+.....+...+
T Consensus 413 i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 413 LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred hccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 0001112223322222111 135776655 455556779999999999999999997777776556
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 560 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+.+...+.| +|++||+.+....+|++..+.+|++...
T Consensus 493 ~~~~~~~~~t-vi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 493 LPLLQEMGKT-IFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhCCCE-EEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 5555545777 9999999998899999999999998644
No 328
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=153.38 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=113.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-c--------cccc----------------cccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-H--------ILSS----------------EYAK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-~--------vpa~----------------~~~~ 494 (843)
.+.++++++++ ..|+++.|+|.||+||||||++|++-..+.. |- . .|.. ....
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~-G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS-GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC-ceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 57899999999 8999999999999999999999965332211 10 0 0000 0001
Q ss_pred cc---------------------------hHHHHHh--hcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCC
Q 003163 495 VP---------------------------WFDSVFA--DIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 495 i~---------------------------~~~~i~~--~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~ 544 (843)
+. .|..-+. ..|.+..+...+..|||+.++.. .+++.+.+|.++||||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 11 1111121 23556667777778898777654 455678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~ 600 (843)
++|||.....+...-.+...+.+.| .+++||+++-+ .|.++.+.+.+|.+..|..
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klT-tlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLT-TLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCc-eEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 9999977777655444444556776 89999998777 7999999999999998863
No 329
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.3e-15 Score=162.46 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=108.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh---c-cccccc---------ccc-----cccccch-----
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---A-KSGLHI---------LSS-----EYAKVPW----- 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~---~-q~G~~v---------pa~-----~~~~i~~----- 497 (843)
..+.++++|+ ..|++++|+|.+||||||+.++|.++.-. . ..|... +.. .+..+++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 4689999999 89999999999999999999998654321 0 111100 000 0001110
Q ss_pred ----------HH-----------------------HHHhhcCchh---hHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEE
Q 003163 498 ----------FD-----------------------SVFADIGDEQ---SLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLL 540 (843)
Q Consensus 498 ----------~~-----------------------~i~~~ig~~q---~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLL 540 (843)
-+ .++..+|..+ .+..+...|||+|+|...| ++++.+|+|||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 00 1122233221 3344556789998766555 577999999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
||||++||....+.+. .+++.+.+ .|.+ +|++|||+.++ .+||++..|..|.+....
T Consensus 178 DEPTTALDvt~QaqIl-~Ll~~l~~e~~~a-iilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 178 DEPTTALDVTVQAQIL-DLLKELQREKGTA-LILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred CCCcchhhHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 9999999997777665 67777775 6886 99999999877 699999999999987543
No 330
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.61 E-value=2.3e-15 Score=177.45 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=103.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++++++++ ++|+.++|+||||||||||+++|++..... .| .++|. +..-+ .
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q-~~~lf~~t 407 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT-SGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGT 407 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEehhhCCHHHHhhheEEecC-Cccccccc
Confidence 45789999999 899999999999999999999997653221 12 11221 10000 1
Q ss_pred hHHHHH---------------hhcCchh-----------hHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSVF---------------ADIGDEQ-----------SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i~---------------~~ig~~q-----------~i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++. ...+..+ .+...-..+|+++ +|+..+.+++.+|+++||||||+|+|+
T Consensus 408 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~ 487 (544)
T TIGR01842 408 VAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487 (544)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCH
Confidence 111221 0011111 1112223567655 555666677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.....+. ..+..+...+.| +|++||+.+....+|++..+.+|++...
T Consensus 488 ~~~~~i~-~~l~~~~~~~~t-vi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 488 EGEQALA-NAIKALKARGIT-VVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred HHHHHHH-HHHHHHhhCCCE-EEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 7666664 445555555777 9999999988889999999999998654
No 331
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.61 E-value=1.8e-15 Score=155.90 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=86.4
Q ss_pred eeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-------c-------ccc------------ccccccccccc--
Q 003163 446 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------K-------SGL------------HILSSEYAKVP-- 496 (843)
Q Consensus 446 ~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q-------~G~------------~vpa~~~~~i~-- 496 (843)
.+++++ .+| +++|+||||+||||||++|.++.-.. . .|. +++......++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 345555 456 89999999999999999996543110 0 010 11110000000
Q ss_pred ---hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHh-----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 497 ---WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 497 ---~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~-----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
...+++.. ..........+|+++++...+... +.+|+++|||||++|+|+.....+. .++..+.+ +.
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~ 167 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK-ET 167 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc-CC
Confidence 01112222 122344556788887776655543 2577999999999999997777765 56666654 57
Q ss_pred eEEEEEccchhHHhhhccccce
Q 003163 569 LLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 569 t~vlitTHd~el~~~a~~~~~v 590 (843)
+ ||++||++++..+++++..+
T Consensus 168 t-iIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 168 Q-FIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred E-EEEEECCHHHHhhcceEEEE
Confidence 6 99999999888787766655
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.1e-15 Score=158.53 Aligned_cols=151 Identities=22% Similarity=0.247 Sum_probs=115.0
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--------------cccccccccccccc--------------
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------KSGLHILSSEYAKV-------------- 495 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--------------q~G~~vpa~~~~~i-------------- 495 (843)
..+++|. ++..+++|.|++||||||++++|+++.-.. ..|.++|. +..++
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccCh-hhheeeeEeeccccccceE
Confidence 3456666 444799999999999999999998764322 23445554 22222
Q ss_pred --------------chHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 496 --------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 496 --------------~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
..|+++...+|.+..+....+++||+.++...| .++++.|.|||||||.+.||..-...+ .-.+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpyl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHH
Confidence 246677788888888999999999866555444 677999999999999999998666666 4678
Q ss_pred HHHHhc-CCeEEEEEccch-hHHhhhccccceeeeEEEEe
Q 003163 561 EAFAES-GSLLTIATTHHG-ELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 561 e~L~~~-g~t~vlitTHd~-el~~~a~~~~~v~ng~v~fd 598 (843)
+.|.+. ... |+.|||-+ |+.++|++++.+.||.|.-.
T Consensus 172 ERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 172 ERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred HHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 888765 777 99999985 56689999999999999753
No 333
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.61 E-value=2.2e-15 Score=180.09 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=109.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--ccc------------------cccccccc--cccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG------------------LHILSSEY--AKVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--q~G------------------~~vpa~~~--~~i~ 496 (843)
+++.+++++++. .+|++++|+|||||||||||++|++..... ..| .++|.... ..+.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 357799999999 999999999999999999999997643221 011 12222100 0001
Q ss_pred h------------------------HHHHHhhcCchhhHhhhh------hhhhHHh-HHHHHHHHhCCCCcEEEEecCCC
Q 003163 497 W------------------------FDSVFADIGDEQSLSQSL------STFSGHL-KQIGNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 497 ~------------------------~~~i~~~ig~~q~i~~~l------stfS~~~-~~l~~il~~a~~p~LLLLDEP~s 545 (843)
+ .+.++..+|..+..+..+ ..+|+++ +|+..+.+++.+|+++||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1 122233334332222222 2467655 55556667899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEec
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~--el~~~a~~~~~v~ng~v~fd~ 599 (843)
|||+.....+. ..++.+.+.|.| +|+|||++ ++..++|+...+.+|++.+.+
T Consensus 196 gLD~~~~~~l~-~~L~~l~~~g~t-vi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 196 GLDSFMAYSVV-QVLKGLAQKGKT-IICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred chhHHHHHHHH-HHHHHHHhCCCE-EEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 99997777775 566677777887 99999996 466899999999999998875
No 334
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.60 E-value=4.1e-15 Score=176.85 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=102.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc--------------------cccccccccccc--ch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--------------------GLHILSSEYAKV--PW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--------------------G~~vpa~~~~~i--~~ 497 (843)
++.++++++++ ++|+.++|+||||||||||+|+|.++.-.... -.++|. +..-+ .+
T Consensus 347 ~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~Ti 425 (588)
T PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ-DAGLFNRSI 425 (588)
T ss_pred CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec-CcccccccH
Confidence 35689999999 89999999999999999999999655322110 012222 10000 01
Q ss_pred HHHH---------------HhhcCchhhH-----------hhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSV---------------FADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i---------------~~~ig~~q~i-----------~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++ ....+..+.+ ..+-..+||+. +|+..+.+++.+|+++||||||+++|+.
T Consensus 426 ~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 1111 1111222111 11122467654 5566666789999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
....+...+ ..+. .+.| +|++||+......+|++..+.+|++..
T Consensus 506 t~~~i~~~l-~~~~-~~~t-vIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 506 TEAKVKAAL-DELM-KGRT-TFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHH-HHHh-cCCE-EEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 777665444 4343 3676 999999999999999999999999864
No 335
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.60 E-value=2.9e-15 Score=168.12 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=107.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-cccc--------c--ccccch----------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSS--------E--YAKVPW---------- 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~--------~--~~~i~~---------- 497 (843)
++..+.++++|+ ..|++++|+|.||+|||||+++|.++.-... |-. +... + ..-+++
T Consensus 15 ~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~-GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS-GEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc-ceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 456788999999 9999999999999999999999965432211 110 0000 0 000111
Q ss_pred ---HH------------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCCh
Q 003163 498 ---FD------------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 498 ---~~------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp 549 (843)
++ .+...+|..=+.+...+.+|-++++...|+ ++..++++|||||||+-|-|
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP 173 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 11 122223333333344445565555555554 67899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEE
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 596 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~-el~~~a~~~~~v~ng~v~ 596 (843)
.+...+. .+++.|.+.|.+ ||++||-. |..++||+...+..|++.
T Consensus 174 ~E~~~lf-~~l~~l~~~G~t-Ii~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 174 QEADELF-EILRRLAAEGKT-IIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 9999986 677889999998 99999965 666899999999999874
No 336
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.60 E-value=4.3e-15 Score=176.59 Aligned_cols=153 Identities=15% Similarity=0.059 Sum_probs=103.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV-- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i-- 495 (843)
+++.++++++|+ ++|+.++|+||||||||||+++|.++. . +.|. ++|. +..-+
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q-~~~LF~~ 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLPHG 437 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEECCEecccCCHHHHHhheEEecC-CCcCCCc
Confidence 346799999999 899999999999999999999997665 3 3332 1221 00000
Q ss_pred chHHHH---------------HhhcCchhhH-----------hhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 496 PWFDSV---------------FADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 496 ~~~~~i---------------~~~ig~~q~i-----------~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
.+.+++ ....+..+.+ ...-..+||+. +|+..+.+++.+|+++|||||||+||
T Consensus 438 TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD 517 (588)
T PRK11174 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLD 517 (588)
T ss_pred CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 011111 1111111111 11123466655 55666667899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+.....+...+ ..+. .+.| +|++||..+....+|++..+.+|++...
T Consensus 518 ~~te~~i~~~l-~~~~-~~~T-vIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 518 AHSEQLVMQAL-NAAS-RRQT-TLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred HHHHHHHHHHH-HHHh-CCCE-EEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 97777665444 4443 4676 9999999999999999999999988643
No 337
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.59 E-value=2.5e-15 Score=180.16 Aligned_cols=155 Identities=16% Similarity=0.130 Sum_probs=103.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i-- 495 (843)
.+..++++++++ ++|+.++|+|+||||||||+|++.++..+.+ | .++|. +..-+
T Consensus 484 ~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~-G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~Lf~g 561 (709)
T COG2274 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ-GRILLDGVDLNDIDLASLRRQVGYVLQ-DPFLFSG 561 (709)
T ss_pred CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEeHHhcCHHHHHhheeEEcc-cchhhcC
Confidence 345799999999 9999999999999999999999965432211 1 12221 10000
Q ss_pred chHH------------HH---HhhcCchhhHh-----------hhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCC
Q 003163 496 PWFD------------SV---FADIGDEQSLS-----------QSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 496 ~~~~------------~i---~~~ig~~q~i~-----------~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
.+.+ ++ ...-|..+.+. ..-+.+||++++ ++.+.+++.+|++||||||||+||
T Consensus 562 SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD 641 (709)
T COG2274 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD 641 (709)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccC
Confidence 0011 11 11122223232 222346766655 555556789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+..-..+...+. .+. .|+| +|++||.....+.|+++..+..|++..++
T Consensus 642 ~~sE~~I~~~L~-~~~-~~~T-~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 642 PETEAIILQNLL-QIL-QGRT-VIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred HhHHHHHHHHHH-HHh-cCCe-EEEEEccchHhhhccEEEEccCCceeccC
Confidence 966555544443 333 3577 99999999999999999999999998765
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=3.6e-15 Score=179.43 Aligned_cols=145 Identities=16% Similarity=0.150 Sum_probs=96.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc----------ccccccccc-ccchHH---------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA-KVPWFD--------- 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G----------~~vpa~~~~-~i~~~~--------- 499 (843)
++.++.+++|+ +.|++++|+||||||||||+|+|+++... ..| .++|..... .-.+.+
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-YGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 45799999999 89999999999999999999999775321 122 123321000 001111
Q ss_pred -------------HHHhhcCchhhHhhh---------hhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 500 -------------SVFADIGDEQSLSQS---------LSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 500 -------------~i~~~ig~~q~i~~~---------lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
.++..++..+.+... ...+|+++++. ..+.+++.+|+++||||||+|+|+.....+.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~ 622 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY 622 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 122233333322221 14678766554 5555678999999999999999996555443
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
+.+.+.|.| +|++||+.++..+|+++..+.
T Consensus 623 ----~~l~~~~~t-vI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 623 ----RLCREFGIT-LFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred ----HHHHHcCCE-EEEEeCchHHHHhCCEEEEEe
Confidence 334445787 999999999988888877663
No 339
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.59 E-value=4e-15 Score=154.83 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=90.4
Q ss_pred eeEEEe--cCCeEEEEEccCCCCchhhhhcccchhhhccc--cc------cc-ccccccccc-----------------h
Q 003163 446 IDIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GL------HI-LSSEYAKVP-----------------W 497 (843)
Q Consensus 446 ~disL~--~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--G~------~v-pa~~~~~i~-----------------~ 497 (843)
+++.|. .+|++++|+|||||||||+|++|....+-... +. .+ .......+. +
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 556665 34789999999999999999999632210000 00 00 000000000 0
Q ss_pred ----HHH-HH-hhcCchhhHhhhhhhhhHHhHHHHHHHH-hC----------CCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 498 ----FDS-VF-ADIGDEQSLSQSLSTFSGHLKQIGNIIS-QS----------TSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 498 ----~~~-i~-~~ig~~q~i~~~lstfS~~~~~l~~il~-~a----------~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
+.+ ++ ...+....+.....++|+++++...+.. ++ .+|+++|||||++|+|+.....+. .++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 111 11 1112334455666788887766655543 33 267999999999999997777664 566
Q ss_pred HHHHhcCCeEEEEEccchhHHh-hhccccceeeeE
Q 003163 561 EAFAESGSLLTIATTHHGELKT-LKYSNDFFENAC 594 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~el~~-~a~~~~~v~ng~ 594 (843)
..+.+.+.| +|++||++++.. +++....+.+|.
T Consensus 177 ~~~~~~~~t-ii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 177 ELIRTENRM-VGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHhCCCE-EEEEECchHHHHhhCcEEEEEecCC
Confidence 677766887 999999998774 556655555543
No 340
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.59 E-value=6.2e-15 Score=174.25 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=104.9
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccc----cc-
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA----KV- 495 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~----~i- 495 (843)
+++++++|+ +.|++++|+||||||||||+++|+++... +.|. +++. +.. .+
T Consensus 356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q-~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSRDDYRDLFSAIFA-DFHLFDDLIG 433 (555)
T ss_pred ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhhCcEEcc-Chhhhhhhhh
Confidence 589999999 89999999999999999999999654322 1121 1111 000 00
Q ss_pred ----c-----hHHHHHhhcCchhhHh---hhh---hhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 496 ----P-----WFDSVFADIGDEQSLS---QSL---STFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 496 ----~-----~~~~i~~~ig~~q~i~---~~l---stfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
+ ...+.+...+..+.+. .++ ..+|++++ |+..+.+.+.+|+++||||||+++|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 0 0011122223222221 111 35776554 555556779999999999999999997777776666
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 560 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
++.+...+.| +|++||+.+....||++..+.+|++..+
T Consensus 514 ~~~~~~~~~t-iiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKRQGKT-IIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCCE-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 6655556787 9999999988889999999999998644
No 341
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.59 E-value=7.9e-15 Score=168.51 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=112.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccc-c----------------------cc---
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-E----------------------YA--- 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~-~----------------------~~--- 493 (843)
...+.++|+|+ ..|++++|+|++|||||||.|+|.++... ..|...... + .+
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 35689999999 99999999999999999999999765433 112111100 0 00
Q ss_pred -ccch----------------------HHHHHhhcCchh-hHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 494 -KVPW----------------------FDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 494 -~i~~----------------------~~~i~~~ig~~q-~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
+..+ +..++..+|... .+......|||+.+ |++.+.+++.+|.+|++|||+|.||
T Consensus 382 Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 382 PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 0000 122344445444 35556677887665 4555567799999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+...+.+...+.+.-.+.|.| .|++|||+.+. .+|+++..|.+|.+...+
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t-~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLT-YLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCE-EEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 988777776555544556887 99999999998 589999999999987654
No 342
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.5e-15 Score=172.15 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=104.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccc-------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY------- 492 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~------- 492 (843)
++++.+++++ ++|+.++|+||||||||||+..|.++.-..+ |. ++|....
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC-ceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 3899999999 8999999999999999999999976543211 21 1111000
Q ss_pred cccch---------HHHHHhhcCc----------hhhHhhhhhhhhH-HhHHHHHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 493 AKVPW---------FDSVFADIGD----------EQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 493 ~~i~~---------~~~i~~~ig~----------~q~i~~~lstfS~-~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+.+ ..+.....|. +..+..+-+.+|+ +.+|+..+.+++.+++++|+||||+++|.+.-
T Consensus 413 eNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 00000 0011111222 2222233334665 55677777788999999999999999999554
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
..+ ...+..+.+. .| +|++||..+...-+|++..+.+|.+...+
T Consensus 493 ~~i-~~~l~~l~~~-kt-vl~itHrl~~~~~~D~I~vld~G~l~~~g 536 (559)
T COG4988 493 QII-LQALQELAKQ-KT-VLVITHRLEDAADADRIVVLDNGRLVEQG 536 (559)
T ss_pred HHH-HHHHHHHHhC-Ce-EEEEEcChHHHhcCCEEEEecCCceeccC
Confidence 444 4555555554 66 99999999999999999999999997543
No 343
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.58 E-value=6.5e-15 Score=175.10 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=102.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccc--ccch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA--KVPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~--~i~~ 497 (843)
+.++++++++ +.|+.++|+||||||||||+++|+++.-.. .|. ++|. +.. .-.+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT-VGQILIDGIDINTVTRESLRKSIATVFQ-DAGLFNRSI 425 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC-CCEEEECCEEhhhCCHHHHHhheEEEcc-CCccCcccH
Confidence 5689999999 899999999999999999999997653221 121 1221 100 0001
Q ss_pred HHHHH---------------hhcCchhh-----------HhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSVF---------------ADIGDEQS-----------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i~---------------~~ig~~q~-----------i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++. ...+..+. +......+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 426 ~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505 (585)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 11111 11111111 112223467655 5556666779999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. ..+..+. .+.| +|++||+.+....+|++..+.+|++...
T Consensus 506 ~~~~i~-~~l~~~~-~~~t-vI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 506 TEARVK-NAIDALR-KNRT-TFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred HHHHHH-HHHHHHh-CCCE-EEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 777665 4445443 4677 9999999998888999999999998754
No 344
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.1e-14 Score=143.67 Aligned_cols=156 Identities=21% Similarity=0.172 Sum_probs=104.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------c---------------------c-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------H---------------------I- 487 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------~---------------------v- 487 (843)
++..-..+++|+ .+|++++|+|.+||||||||++|..-. +++.|. + +
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 445667889999 889999999999999999999995321 111110 0 0
Q ss_pred --cc-------ccccccch---------HH-------HHHhhcCc-hhhHhhhhhhhhHHhHHHHHHHH-hCCCCcEEEE
Q 003163 488 --LS-------SEYAKVPW---------FD-------SVFADIGD-EQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLL 540 (843)
Q Consensus 488 --pa-------~~~~~i~~---------~~-------~i~~~ig~-~q~i~~~lstfS~~~~~l~~il~-~a~~p~LLLL 540 (843)
|. ..+..++- +. .++..+.. ...++....+||++|++...|+. +++.|.|+++
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfM 175 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEe
Confidence 00 00111100 00 11222211 23345566799999988877765 5899999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHH-HhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 598 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L-~~~g~t~vlitTHd~el~~-~a~~~~~v~ng~v~fd 598 (843)
||||.|||..-.+.+. .++.-| .+.+.+ ++++|||...+. ++++...+..|.+...
T Consensus 176 DEPTGGLDVSVQARLL-DllrgLv~~l~la-~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 176 DEPTGGLDVSVQARLL-DLLRGLVRELGLA-VVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred cCCCCCcchhhHHHHH-HHHHHHHHhcCce-EEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999996555554 555555 456887 999999999986 6777778888877643
No 345
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.58 E-value=1.1e-14 Score=176.17 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i-- 495 (843)
+++.++++++|+ ++|+.++|+||||||||||+|+|.++... +.| .++|. +..-+
T Consensus 464 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~g 541 (686)
T TIGR03797 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDVQAVRRQLGVVLQ-NGRLMSG 541 (686)
T ss_pred CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCHHHHHhccEEEcc-CCccCcc
Confidence 346799999999 89999999999999999999999654322 112 12222 10000
Q ss_pred chHHHH--------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 496 PWFDSV--------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 496 ~~~~~i--------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+++ ....+..+.+. .+-..+||++ +++..+.+++.+|+++|||||||++|+
T Consensus 542 TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 542 SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 011111 22223222222 1123467655 555666677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+...+ .+.+.| +|++||..+....+|++..+.+|++..++
T Consensus 622 ~te~~i~~~L----~~~~~T-~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 622 RTQAIVSESL----ERLKVT-RIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHH----HHhCCe-EEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 6666654433 333576 99999999999999999999999987553
No 346
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.57 E-value=9e-15 Score=173.07 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=102.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc--------------------ccccccccc---cc--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--------------------GLHILSSEY---AK-- 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--------------------G~~vpa~~~---~~-- 494 (843)
++++++++++. +.|+.++|+||||+|||||+|+|+++.-.... -.++|.... ..
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 45789999999 88999999999999999999999654322110 012222000 00
Q ss_pred --cc----------hHHHHHhhcCchhhHhh-----------hhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 495 --VP----------WFDSVFADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 495 --i~----------~~~~i~~~ig~~q~i~~-----------~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+. .+.+.+...|..+.+.. .-..+|++. +++..+.+.+.+|+++||||||+++|+.
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 00 01111222232222211 112467654 5556666789999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
....+...+ ..+. .+.| +|++||+.....+||++..+.+|++..
T Consensus 504 ~~~~i~~~L-~~~~-~~~t-iIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 504 SERLVQAAL-ERLM-QGRT-TLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHH-HHHh-CCCE-EEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 777775444 4443 4576 999999999999999999999988763
No 347
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.57 E-value=8.7e-15 Score=173.49 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=102.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i--~ 496 (843)
+..+++++++. ++|+.++|+||||||||||+++|+++... ..|. ++|. +..-+ .
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~t 404 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLDSWRSRLAVVSQ-TPFLFSDT 404 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHHHHHhheEEEcc-CCeecccc
Confidence 45789999999 89999999999999999999999765322 1121 1221 00000 0
Q ss_pred hHHHH---------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSV---------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i---------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++ ....+..+.+. .....+|+++ +|+..+.+++.+|+++||||||+|+|+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 11111 11112111111 1123467655 455556677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.....+... +..+. .+.| +|++||+.+....++++..+.+|++...
T Consensus 485 ~~~~~i~~~-l~~~~-~~~t-ii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 485 RTEHQILHN-LRQWG-EGRT-VIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred HHHHHHHHH-HHHHh-CCCE-EEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 777766544 44443 4777 9999999988888999999999988654
No 348
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.57 E-value=1.1e-14 Score=172.75 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=103.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~~ 497 (843)
+.++++++|+ ++|+.++|+||||||||||+++|+++.-. ..| .++|. +..-+ .+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSEAALRQAISVVSQ-RVHLFSATL 430 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhheeEEcc-cchhhcccH
Confidence 5699999999 89999999999999999999999754321 112 12221 10000 00
Q ss_pred HH---------------HHHhhcCchhhHhh----------hhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 498 FD---------------SVFADIGDEQSLSQ----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 498 ~~---------------~i~~~ig~~q~i~~----------~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+ +.+...+..+.+.. +-..+|++. +++..+.+++.+|+++||||||+++|+..
T Consensus 431 ~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 431 RDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred HHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11 11222333333322 223467655 55555667799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+... +..+. .+.| +|++||+.+....+|++..+.+|++...
T Consensus 511 ~~~i~~~-l~~~~-~~~t-viiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 511 ERQILEL-LAEHA-QNKT-VLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHH-HHHHc-CCCE-EEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 6666544 44443 4676 9999999988888999999999998754
No 349
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.57 E-value=9.3e-15 Score=177.47 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=102.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++++++|+ ++|+.++|+||||||||||+|+|.++.... .| .++|. +..-+ .
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gT 568 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSVAMVDQ-DIFLFEGT 568 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhheeEEec-CChhhhcc
Confidence 46799999999 899999999999999999999996543221 12 12222 10000 0
Q ss_pred hHHHH---------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSV---------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i---------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++ ....+..+.+. .+-..+||++ +++..+.+++.+|+++|||||||+||+
T Consensus 569 i~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 569 VRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648 (710)
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH
Confidence 11111 11112222221 1223467655 555556677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+...+ .+.+.| +|++||..+....+|++..+.+|++..++
T Consensus 649 ~te~~i~~~l----~~~~~T-~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 649 ETEKIIDDNL----RRRGCT-CIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHH----HhcCCE-EEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 6666554433 345787 99999999999999999999999997553
No 350
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.57 E-value=1.3e-14 Score=172.79 Aligned_cols=153 Identities=11% Similarity=0.078 Sum_probs=103.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++++++|+ ++|+.++|+||||||||||+|+|.++.-.. .| .++|. +..-+ .
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~l~~~i~~v~Q-~~~lF~~T 430 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSLSHSVLRQGVAMVQQ-DPVVLADT 430 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhCCHHHHHhheEEEcc-CCccccch
Confidence 35699999999 899999999999999999999996543221 12 12222 10000 0
Q ss_pred hHHH--------------HHhhcCchhhHhh---hh--------hhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 497 WFDS--------------VFADIGDEQSLSQ---SL--------STFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~~~~--------------i~~~ig~~q~i~~---~l--------stfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+.++ .....|..+.+.. ++ ..+||+ .+|+..+.+++.+|+++||||||+++|+.
T Consensus 431 i~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 431 FLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 0111 1222232222221 11 236665 55666666789999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+...+ ..+.. ++| +|++||+.+....+|++..+.+|++..+
T Consensus 511 t~~~i~~~l-~~~~~-~~t-vIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 511 TEQAIQQAL-AAVRE-HTT-LVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred HHHHHHHHH-HHHhC-CCE-EEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 766665444 44433 576 9999999999999999999999998743
No 351
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.57 E-value=1.2e-14 Score=176.08 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=103.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
.+.++++++|+ ++|+.++|+||||||||||+|+|.++.-.. .| .++|. +..-+ .
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i~~v~Q-~~~lf~~T 554 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGT 554 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhccEEECC-Chhhhhhh
Confidence 45799999999 899999999999999999999996543221 12 12221 10000 0
Q ss_pred hHHHH---------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSV---------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i---------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++ ....+..+.+. ..-..+|+++ +++..+.+++.+|+++||||||+++|+
T Consensus 555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 555 LRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 01111 12222222221 1123467655 555555677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.....+... +..+. .+.| +|++||+.+....||++..+.+|++...
T Consensus 635 ~te~~i~~~-l~~~~-~~~T-~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 635 RSEERFKDR-LKRWL-AGKT-LVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred HHHHHHHHH-HHHHh-CCCE-EEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 777776544 44444 3676 9999999999999999999999998643
No 352
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.57 E-value=1e-14 Score=173.16 Aligned_cols=153 Identities=11% Similarity=0.079 Sum_probs=102.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++++++++ ++|+.++|+||||||||||+|+|.++.-. ..| .++|. +..-+ .
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q-~~~lf~~T 432 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALVSQ-NVHLFNDT 432 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEEcc-Cceeecch
Confidence 36799999999 88999999999999999999999664322 112 12222 10000 0
Q ss_pred hHHHHH----------------hhcCchhhH---hhhh--------hhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 497 WFDSVF----------------ADIGDEQSL---SQSL--------STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 497 ~~~~i~----------------~~ig~~q~i---~~~l--------stfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
+-+++. ...+..+.+ ..++ ..+||+. +++..+.+++.+|+++||||||+++|
T Consensus 433 i~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 433 IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 111111 111211111 1122 3367655 55555667799999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+.....+...+. .+. .++| +|++||+.+....||++..+.+|++..+
T Consensus 513 ~~t~~~i~~~l~-~~~-~~~t-vI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 513 TESERAIQAALD-ELQ-KNRT-SLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred HHHHHHHHHHHH-HHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 977777655443 343 3576 9999999999999999999999998754
No 353
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.57 E-value=3.8e-15 Score=167.96 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=103.3
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHH----------------------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD---------------------- 499 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~---------------------- 499 (843)
.+.++++|+ .-+.-++++||||+|||||||++.+. +.+..|...|. ....+++|.
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd-l~p~~G~vs~~-~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~ 481 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGD-LQPTIGMVSRH-SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFP 481 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhc-ccccccccccc-ccccchhhhhhhHhhcCcchhHHHHHHHhcc
Confidence 678888888 55566899999999999999999532 33334544443 222333222
Q ss_pred ---------HHHhhcCch-hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 500 ---------SVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 500 ---------~i~~~ig~~-q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
.++..+|.. +.....++++|.++++ +..+...+..|.||||||||+|||.....+++. .+.+..+
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae----aiNe~~G 557 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAE----AINEFPG 557 (614)
T ss_pred ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH----HHhccCC
Confidence 233344433 2333456777866654 455556689999999999999999977666654 4555666
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEEE
Q 003163 569 LLTIATTHHGELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 569 t~vlitTHd~el~-~~a~~~~~v~ng~v~f 597 (843)
+ ||+||||..+. .++.+++.+.|+.+.-
T Consensus 558 g-vv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 558 G-VVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred c-eeeeechhhHHHHHHHHhHhhccCceee
Confidence 5 89999998777 6999999999988864
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.56 E-value=9.1e-15 Score=187.86 Aligned_cols=157 Identities=12% Similarity=0.110 Sum_probs=106.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-cccc------------------ccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGL------------------HILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q~G~------------------~vpa~~~--~~i~~~ 498 (843)
++.+++++++. .+|++++|+|||||||||||++|++....+ ..|. +++.... ..+.+.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 34689999999 899999999999999999999997753210 0111 1111000 000111
Q ss_pred ------------------------HHHHhhcCchhhHhhhh-----hhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCC
Q 003163 499 ------------------------DSVFADIGDEQSLSQSL-----STFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 499 ------------------------~~i~~~ig~~q~i~~~l-----stfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlD 548 (843)
+.++..++..+...... +.+|+++++.. .+.+++.+|++|||||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 11222233322222221 45787766554 4457799999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhhhccccceee-eEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFEN-ACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~e--l~~~a~~~~~v~n-g~v~fd~ 599 (843)
+.....+ ..+++.+.+.|.| ||+|||++. +..++|+...+.+ |++.+.+
T Consensus 1052 ~~~a~~v-~~~L~~l~~~g~t-VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1052 ARAAAIV-MRTVRNTVDTGRT-VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHH-HHHHHHHHHCCCE-EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 9666666 5677778888887 999999986 4578999999986 7887654
No 355
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=1.7e-14 Score=154.72 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=71.1
Q ss_pred hcCchh-hHhhhhhhhhHHhHHHHHHH-HhCCC---CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 504 DIGDEQ-SLSQSLSTFSGHLKQIGNII-SQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 504 ~ig~~q-~i~~~lstfS~~~~~l~~il-~~a~~---p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
.+|... .+.+..+++|+++++...++ +++.+ |+++||||||+|||+.+...+. .++..+.+.|.| +|++||++
T Consensus 155 ~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~~g~t-vIiitH~~ 232 (261)
T cd03271 155 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVDKGNT-VVVIEHNL 232 (261)
T ss_pred HcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCH
Confidence 344443 35566778888776655554 44543 7999999999999998888775 566777878887 99999999
Q ss_pred hHHhhhccccce------eeeEEEEe
Q 003163 579 ELKTLKYSNDFF------ENACMEFD 598 (843)
Q Consensus 579 el~~~a~~~~~v------~ng~v~fd 598 (843)
++...|+++..+ .+|++.+.
T Consensus 233 ~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 233 DVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 988889888888 67887764
No 356
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.55 E-value=1.1e-14 Score=172.49 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=101.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~~ 497 (843)
+.++++++|+ ++|+.++|+||||||||||+|+|.++.... .| .++|. +..-+ .+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i~~~~Q-~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ-SGRILLDGVDLRQLDPAELRARMALVPQ-DPVLFAASV 430 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCEEEECCEEHHhcCHHHHHHhceEEcc-CCccccccH
Confidence 5689999999 899999999999999999999996543221 12 12221 10000 01
Q ss_pred HHHH---------------HhhcCchhhH-----------hhhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSV---------------FADIGDEQSL-----------SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i---------------~~~ig~~q~i-----------~~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++ +...+..+.+ ...-..+|++ .+++..+.+.+.+|+++||||||+++|+.
T Consensus 431 ~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 431 MENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 1111 1111211111 1122346654 55666666778999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. ..+..+. .+.| +|++||+.+....+|++..+.+|++...
T Consensus 511 ~~~~i~-~~l~~~~-~~~t-~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 511 SEQLVQ-QALETLM-KGRT-TLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred HHHHHH-HHHHHHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEee
Confidence 666554 4444443 4676 9999999999999999999999998754
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.55 E-value=1.4e-14 Score=179.11 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=108.2
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccc-------------cccccchHHHH--------
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-------------EYAKVPWFDSV-------- 501 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~-------------~~~~i~~~~~i-------- 501 (843)
+.+++++. +.|++.+++|||||||||++|++.+...+...-.++... .-+..|.++.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 67788998 889999999999999999999986543222100011000 00111222222
Q ss_pred -----------------------HhhcCchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 502 -----------------------FADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 502 -----------------------~~~ig~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
+..++.........+++|++++| +..+++.+.+|++++||||++|+||.... ..|
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr-~lW 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR-HLW 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH-HHH
Confidence 22233334444455778887765 45556789999999999999999995554 558
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 558 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+++.|.. +|+|||.++.. .+|++...+.+|++.--
T Consensus 739 ~ii~~~~k~g~a-iiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 739 DIIARLRKNGKA-IILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred HHHHHHHhcCCE-EEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 888888887765 99999999888 59999999999999753
No 358
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.7e-14 Score=163.13 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=111.7
Q ss_pred CchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccc------cc----cccc--
Q 003163 430 PSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS------EY----AKVP-- 496 (843)
Q Consensus 430 ~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~------~~----~~i~-- 496 (843)
..+-+.++=.....++++|+|+ ..|+-++|+|++||||||++.+|.+.. .++.|...... .. ..+.
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 3333334333345799999999 888889999999999999999996432 22223221110 00 0111
Q ss_pred -----hH--------------------HHHHhhcCchhhHhhh-----------hhhhhHH-hHHHHHHHHhCCCCcEEE
Q 003163 497 -----WF--------------------DSVFADIGDEQSLSQS-----------LSTFSGH-LKQIGNIISQSTSQSLVL 539 (843)
Q Consensus 497 -----~~--------------------~~i~~~ig~~q~i~~~-----------lstfS~~-~~~l~~il~~a~~p~LLL 539 (843)
.| -.++...|.++.+... -..|||+ .+|+..+..++.+.+++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 11 1123334444333322 1346654 556666666788999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
|||||.||||..-..+...+.+.+. |.| +|++||+....+.+|++..+.||++..++.
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~~~--~kT-ll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEHAE--GKT-LLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHHhc--CCe-EEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 9999999999887777655555443 677 999999999999999999999999987653
No 359
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.55 E-value=2e-14 Score=152.15 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=111.3
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccc-c------cccchHHHHHhhcCchh-hHhh
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE-Y------AKVPWFDSVFADIGDEQ-SLSQ 513 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~-~------~~i~~~~~i~~~ig~~q-~i~~ 513 (843)
.+.++|+|+ ..|++++|+|.+||||||+-|+|.++.-.. .|....... . .....+..++..+|... .+..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhc
Confidence 678999999 899999999999999999999995543322 232221100 0 01122344566777544 5566
Q ss_pred hhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHh-hhccccce
Q 003163 514 SLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-LKYSNDFF 590 (843)
Q Consensus 514 ~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~-~a~~~~~v 590 (843)
....|||++++. ..+.+++.+|+++++|||+|.||....+.+ ..++..+.+. |.+ .+++|||...+. +++++..|
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI-lnLL~dlq~~~~lt-~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI-LNLLKDLQEELGLT-YLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH-HHHHHHHHHHhCCe-EEEEEEEHHhhhhhcccEEEE
Confidence 677889876554 445567899999999999999999555555 4666667654 887 999999999885 78888888
Q ss_pred eeeEEEEec
Q 003163 591 ENACMEFDE 599 (843)
Q Consensus 591 ~ng~v~fd~ 599 (843)
..|.+....
T Consensus 184 y~G~iVE~g 192 (268)
T COG4608 184 YLGKIVEIG 192 (268)
T ss_pred ecCceeEec
Confidence 888886543
No 360
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.54 E-value=2.3e-14 Score=174.06 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=102.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
++.++++++++ ++|+.++|+||||||||||+|+|.++.-. ..| .++|. +..-+ .
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lf~gT 563 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLPQ-EPYIFSGS 563 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEec-CceehhHH
Confidence 46799999999 88999999999999999999999654322 112 12222 10000 0
Q ss_pred hHHHH----------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 497 WFDSV----------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 497 ~~~~i----------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
+.+++ ....+..+.+. .+-..+|+++ +++..+.+++.+|+++||||||+++|
T Consensus 564 I~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 01111 11122222221 1223466655 55555567789999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+.....+...+. .+ .+.| +|++||+.+....+|++..+.+|++..+
T Consensus 644 ~~te~~i~~~L~-~~--~~~T-~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 644 TITEKKIVNNLL-NL--QDKT-IIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred HHHHHHHHHHHH-Hh--cCCE-EEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 976666654443 33 4677 9999999999999999999999998754
No 361
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=8.3e-15 Score=152.67 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=57.0
Q ss_pred hhhhhhhhHHhHHHHHHHH-hC----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 512 SQSLSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il~-~a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
....+.+|+++++...+.. .+ .+|++++||||++|+||.....+ ..++..+.+ +.+ +|++||+.++..+|++
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l-~~~l~~~~~-~~~-~iivs~~~~~~~~~d~ 198 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV-ANYIKERTK-NAQ-FIVISLRNNMFELADR 198 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH-HHHHHHHcC-CCE-EEEEECcHHHHHhCCE
Confidence 3445678888877666654 32 46899999999999999777666 456666654 555 8899999888889888
Q ss_pred cccee
Q 003163 587 NDFFE 591 (843)
Q Consensus 587 ~~~v~ 591 (843)
+..+.
T Consensus 199 v~~~~ 203 (212)
T cd03274 199 LVGIY 203 (212)
T ss_pred EEEEE
Confidence 76653
No 362
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.54 E-value=2.8e-14 Score=172.89 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=104.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i-- 495 (843)
+++.++++++|. ++|+.++|+||||||||||+|+|+++..... | .++|. +..-+
T Consensus 468 ~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~-G~I~idg~~i~~~~~~~~r~~i~~v~q-~~~lf~~ 545 (694)
T TIGR01846 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH-GQVLVDGVDLAIADPAWLRRQMGVVLQ-ENVLFSR 545 (694)
T ss_pred CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCEehhhCCHHHHHHhCeEEcc-CCeehhh
Confidence 345689999999 8899999999999999999999976532211 1 12222 10000
Q ss_pred chHHHH---------------HhhcCchhhH-----------hhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCC
Q 003163 496 PWFDSV---------------FADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 496 ~~~~~i---------------~~~ig~~q~i-----------~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlD 548 (843)
.+.+++ ....+..+.+ ..+-..+|+++ +++..+.+++.+|+++||||||+|+|
T Consensus 546 ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD 625 (694)
T TIGR01846 546 SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALD 625 (694)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 001111 1112222221 12223567655 55555667799999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+.....+...+ ..+. .+.| +|++||+.+....+|++..+.+|++..++
T Consensus 626 ~~~~~~i~~~l-~~~~-~~~t-~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 626 YESEALIMRNM-REIC-RGRT-VIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHH-HHHh-CCCE-EEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 97766665444 4443 4677 99999999988889999999999987553
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.54 E-value=1.9e-14 Score=185.06 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=105.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh--cccc------c-----------ccccccc--cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSG------L-----------HILSSEY--AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~--~q~G------~-----------~vpa~~~--~~i~~~ 498 (843)
++.+++++++. .+|++++|+|||||||||||++|++.... ...| . ++|.... ....+.
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 45789999999 89999999999999999999999765421 0111 1 2221100 000111
Q ss_pred H------------------------HHHhhcCchhhHhhhhh----hhhHHhHHHHHH-HHhCCCCc-EEEEecCCCCCC
Q 003163 499 D------------------------SVFADIGDEQSLSQSLS----TFSGHLKQIGNI-ISQSTSQS-LVLLDEIGAGTN 548 (843)
Q Consensus 499 ~------------------------~i~~~ig~~q~i~~~ls----tfS~~~~~l~~i-l~~a~~p~-LLLLDEP~sGlD 548 (843)
+ +++..++..+..+..+. .+|+++++...| .+++.+|+ +|||||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 1 12222232222222222 577766655544 57789996 999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhccccceeee-EEEEec
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKYSNDFFENA-CMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el--~~~a~~~~~v~ng-~v~fd~ 599 (843)
+.....+ ..+++.+.+.|.| ||+|||++.. ...+|+...+.+| ++.+.+
T Consensus 935 ~~~~~~i-~~~L~~la~~g~t-vI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLADHGQA-ILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HHHHHHH-HHHHHHHHHcCCE-EEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 9666666 5677777777887 9999999864 3678999899887 877654
No 364
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=2.8e-14 Score=147.86 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=57.6
Q ss_pred hhhhhhhhHHhHHH-------HHHHHhCCCCcEEEEecCCCCCChhhHH-HHHHHHHHHHHhc-CCeEEEEEccchhHHh
Q 003163 512 SQSLSTFSGHLKQI-------GNIISQSTSQSLVLLDEIGAGTNPLEGT-ALGMSLLEAFAES-GSLLTIATTHHGELKT 582 (843)
Q Consensus 512 ~~~lstfS~~~~~l-------~~il~~a~~p~LLLLDEP~sGlDp~e~~-al~~~lle~L~~~-g~t~vlitTHd~el~~ 582 (843)
....+.+|+++++. ..+.+.+.+|+++|||||++|||+.... .+. .++..+.+. +.+ +|++||++++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~-iiiitH~~~~~~ 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQ-LIVITHDEELVD 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCE-EEEEEecHHHHh
Confidence 44557788777664 3334567899999999999999997766 564 566666655 676 999999998887
Q ss_pred hhccccce
Q 003163 583 LKYSNDFF 590 (843)
Q Consensus 583 ~a~~~~~v 590 (843)
.++++..+
T Consensus 188 ~~d~i~~l 195 (204)
T cd03240 188 AADHIYRV 195 (204)
T ss_pred hCCEEEEE
Confidence 77766544
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.52 E-value=3.1e-14 Score=184.53 Aligned_cols=154 Identities=18% Similarity=0.103 Sum_probs=105.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHHHH---------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 502 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~i~--------- 502 (843)
++++.+++|+ +.|++++|+|||||||||||++|.+...... | .|+|..... .-.+.+++.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~-G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE-GKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 4689999999 8999999999999999999999966532211 1 122221000 001112221
Q ss_pred -----hhcCchhh-----------HhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 503 -----ADIGDEQS-----------LSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 503 -----~~ig~~q~-----------i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
...+.... +.....++|+++++. ..+.+.+.+|+++|||||++|+|+.....+...++..+.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~- 596 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM- 596 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 11111111 122234678776655 445567899999999999999999888888765555444
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 566 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 566 ~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
++.| +|++||+.+....|+++..+.+|.+..+
T Consensus 597 ~~~t-vilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 597 SNKT-RILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCCe-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 3777 9999999998888999999999998654
No 366
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.52 E-value=3.7e-14 Score=172.26 Aligned_cols=151 Identities=12% Similarity=0.078 Sum_probs=99.6
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--ch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~~ 497 (843)
+.++++++|+ ++|+.++|+||||||||||+|+|.++.-. +.| .++|. +..-+ .+
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q-~~~lF~gTI 571 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVALVGQ-EPVLFSGSV 571 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceEEec-CccccccCH
Confidence 5799999999 89999999999999999999999654321 112 12221 10000 01
Q ss_pred HHHH---------------HhhcCchhhHh-----------hhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSV---------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i---------------~~~ig~~q~i~-----------~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
-+++ ....+..+.+. ..-..+||+. +|+..+.+++.+|+++||||||+++|+.
T Consensus 572 reNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 572 RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 1111 11122222111 1113467655 5555556779999999999999999995
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
....+. . .....+.| +|++||..+....+|++..+.+|++...+
T Consensus 652 te~~i~-~---~~~~~~~T-vIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 652 CEQLLQ-E---SRSRASRT-VLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred HHHHHH-H---hhccCCCe-EEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 544443 3 22335677 99999999999999999999999987543
No 367
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5e-14 Score=159.56 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=112.5
Q ss_pred CCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-------hhc------------ccccccc
Q 003163 429 SPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-------MMA------------KSGLHIL 488 (843)
Q Consensus 429 ~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-------~~~------------q~G~~vp 488 (843)
...+.+.++- +++.|+++++|+ +.|+-++|+|+|||||||+||+|-.+. +.+ +.-.++|
T Consensus 353 ~F~dV~f~y~-~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VP 431 (591)
T KOG0057|consen 353 EFDDVHFSYG-PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVP 431 (591)
T ss_pred EEEeeEEEeC-CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeC
Confidence 3334444442 345599999999 888999999999999999999983221 111 1122455
Q ss_pred ccccccc--ch---------------HHHHHhhcCchhhHhhhh---h--------hhh-HHhHHHHHHHHhCCCCcEEE
Q 003163 489 SSEYAKV--PW---------------FDSVFADIGDEQSLSQSL---S--------TFS-GHLKQIGNIISQSTSQSLVL 539 (843)
Q Consensus 489 a~~~~~i--~~---------------~~~i~~~ig~~q~i~~~l---s--------tfS-~~~~~l~~il~~a~~p~LLL 539 (843)
. +..-+ .+ +-++....+..+.+.... + .+| |++|++..+.+.+.+|++++
T Consensus 432 Q-d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 432 Q-DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred C-cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 4 21111 01 112233444444443321 1 234 45666777778899999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+|||||.||...-..+...+.+ ...+.| +|++-|++.+...+|++..+.||.|..-
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~--~~~~rT-vI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMD--VMSGRT-VIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred ecCcccccchhhHHHHHHHHHH--hcCCCe-EEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 9999999999777777766665 335677 9999999999999999999999999754
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.52 E-value=4.5e-14 Score=183.27 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=106.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-------ccccccccccc-ccchHHHH----------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEYA-KVPWFDSV---------- 501 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-------~G~~vpa~~~~-~i~~~~~i---------- 501 (843)
++.++++++|. +.|++++|+|||||||||||++|.+...... .-.|+|..... ...+.+++
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~ 751 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAAR 751 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHH
Confidence 45689999999 8999999999999999999999976432211 01133321000 00111111
Q ss_pred -------------Hhhc--CchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 502 -------------FADI--GDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 502 -------------~~~i--g~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
+..+ |+...+.....++|+++++. ..+.+++.+|+++|||||+++||+.....+...++....
T Consensus 752 ~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~- 830 (1560)
T PTZ00243 752 LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL- 830 (1560)
T ss_pred HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-
Confidence 1111 22223334455678766554 555567899999999999999999777777655443322
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 566 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 566 ~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.|.| +|++||+.++..+|+++..+.+|.+.++
T Consensus 831 ~~~T-vIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 831 AGKT-RVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 4777 9999999999999999999999998765
No 369
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.6e-14 Score=162.17 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=99.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh--hc----ccccccccccc---ccc--------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--MA----KSGLHILSSEY---AKV-------------- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--~~----q~G~~vpa~~~---~~i-------------- 495 (843)
|++.++++-+++ ..|+-++++||||+|||||||+|+.-.+ +. ..|.++++... +..
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~ 170 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLA 170 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhc
Confidence 567777777777 6677799999999999999999964111 00 01223322100 000
Q ss_pred -----chHHHHHhhcCch-hhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 496 -----PWFDSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 496 -----~~~~~i~~~ig~~-q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
.+.+.++..+|.. +-..+...+|||+.+ ++..+.++..+|+||||||||+.||... ++| +..+|...+.
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a---v~W-Le~yL~t~~~ 246 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA---VAW-LENYLQTWKI 246 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH---HHH-HHHHHhhCCc
Confidence 0111233445543 344566788998764 5666667789999999999998888733 433 5678888888
Q ss_pred eEEEEEccchhHH-hhhccccceee
Q 003163 569 LLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 569 t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
| +|+||||..|. ..|..++.+++
T Consensus 247 T-~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 247 T-SLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred e-EEEEeccHHHHHHHHHHHHHHhh
Confidence 7 99999999998 47777777765
No 370
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.50 E-value=7.7e-14 Score=163.86 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=92.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~--i~~ 497 (843)
++++++++++ ++|+.++|+||||||||||+|+|+++.-... | .++|. +..- -.+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~I~~~g~~i~~~~~~~lr~~i~~v~Q-~~~lf~~ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE-GSIAVNGVPLADADADSWRDQIAWVPQ-HPFLFAGTI 412 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEECCEehhhCCHHHHHhheEEEcC-CCcccCcCH
Confidence 4789999999 8999999999999999999999965432211 1 11221 1000 001
Q ss_pred HHHH---------------HhhcCchhhH-----------hhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSV---------------FADIGDEQSL-----------SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i---------------~~~ig~~q~i-----------~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++ +...+..+.+ ...-..+||+++ |+..+.+++.+|+++||||||+++|+.
T Consensus 413 ~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~ 492 (529)
T TIGR02857 413 AENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492 (529)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 1111 1112222211 112235676655 455556778999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
....+...+. .+. .+.| +|++||+.+....||++.
T Consensus 493 ~~~~i~~~l~-~~~-~~~t-~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 493 TEALVTEALR-ALA-QGRT-VLLVTHRLALAERADRIV 527 (529)
T ss_pred HHHHHHHHHH-Hhc-CCCE-EEEEecCHHHHHhCCEEE
Confidence 7777654443 343 4677 999999998888877664
No 371
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.50 E-value=5e-14 Score=158.21 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=106.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------cccccccccccccchH
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYAKVPWF 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~~vpa~~~~~i~~~ 498 (843)
..+++..+++|. ..|+.++|+||+|||||||.|+|.++..... .-.|.|..-.-.-+-+
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 346899999999 8899999999999999999999965432211 1113332100000000
Q ss_pred HHHHhhcC----------------chh-----------hHhhhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 499 DSVFADIG----------------DEQ-----------SLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 499 ~~i~~~ig----------------~~q-----------~i~~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+-..+|+ +.+ .+-..-+++|++ .+|+..+.++..+|.|++||||-++||..
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 01112222 111 111222456655 45666777889999999999999999985
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 596 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~ 596 (843)
--.++..+|+ .++.+|++ +|++||-+.....+|.+..+.+|.|.
T Consensus 507 GE~AL~~Ai~-~~k~rG~~-vvviaHRPs~L~~~Dkilvl~~G~~~ 550 (580)
T COG4618 507 GEAALAAAIL-AAKARGGT-VVVIAHRPSALASVDKILVLQDGRIA 550 (580)
T ss_pred HHHHHHHHHH-HHHHcCCE-EEEEecCHHHHhhcceeeeecCChHH
Confidence 5556665554 57888997 99999999999999999999999985
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=6.7e-14 Score=147.98 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=56.0
Q ss_pred hhhhhhhHHhHHHHHHHHhC-----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 513 QSLSTFSGHLKQIGNIISQS-----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~~a-----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
.....+|+++++...++..+ .+|+++||||||+|+||.....+. ..+..+.+ +.+ +|++||..++..+|++.
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~-~~l~~~~~-~~~-ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVA-NMIKELSD-GAQ-FITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHH-HHHHHHhC-CCE-EEEEecCHHHHhhCCEE
Confidence 45567888877666555432 468999999999999997777665 45555654 665 89999998888888887
Q ss_pred cce
Q 003163 588 DFF 590 (843)
Q Consensus 588 ~~v 590 (843)
..+
T Consensus 231 ~~l 233 (243)
T cd03272 231 YGV 233 (243)
T ss_pred EEE
Confidence 655
No 373
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.49 E-value=7.5e-14 Score=179.66 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=105.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh---hccccc--------------------cccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM---MAKSGL--------------------HILSSE--YAK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~---~~q~G~--------------------~vpa~~--~~~ 494 (843)
.+.+++++++. .+|++++|+||||||||||||+|++... ....|. +++... ...
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999 9999999999999999999999976531 111111 111100 000
Q ss_pred cchHHH-----------------------------HHhhcCchhhHhh-----hhhhhhHHhHHH-HHHHHhCCCCcEEE
Q 003163 495 VPWFDS-----------------------------VFADIGDEQSLSQ-----SLSTFSGHLKQI-GNIISQSTSQSLVL 539 (843)
Q Consensus 495 i~~~~~-----------------------------i~~~ig~~q~i~~-----~lstfS~~~~~l-~~il~~a~~p~LLL 539 (843)
+.+.+. ++..+|..+.... ....+|+++++. ..+.+++.+|+++|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 111111 1222222221111 123467766554 44557789999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccch--hHHhhhccccceeeeEEEEec
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~--el~~~a~~~~~v~ng~v~fd~ 599 (843)
|||||+|||+.....+. .+++.+.+ .|.| +|+++|+. ++..++|++..+.+|++.+.+
T Consensus 233 lDEPTsgLD~~~~~~i~-~~L~~la~~~g~t-vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 233 WDNATRGLDSATALEFI-RALKTSANILDTT-PLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred EeCCCCCcCHHHHHHHH-HHHHHHHHhcCCE-EEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999997777775 56667765 4787 99999985 456899999999999998765
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.48 E-value=5.5e-14 Score=180.77 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=64.8
Q ss_pred hhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccch--hHHhhhcccccee
Q 003163 516 STFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFE 591 (843)
Q Consensus 516 stfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~--el~~~a~~~~~v~ 591 (843)
+.+|+++++. ..+.+++.+|+++||||||+|||+.....+. .+++.+.+ .|.| +|+++|+. +...++|++..+.
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~-~~Lr~la~~~g~T-viis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIV-KCLQQIVHLTEAT-VLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHH-HHHHHHHHhcCCE-EEEEecCCCHHHHHHhheEEEee
Confidence 4567666554 4445678999999999999999997777776 55566655 5777 99999984 5668999999999
Q ss_pred eeEEEEec
Q 003163 592 NACMEFDE 599 (843)
Q Consensus 592 ng~v~fd~ 599 (843)
+|++.+.+
T Consensus 413 ~G~ivy~G 420 (1470)
T PLN03140 413 EGQIVYQG 420 (1470)
T ss_pred CceEEEeC
Confidence 99998865
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.47 E-value=1.2e-12 Score=148.11 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=95.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh--ccccccccc-----cc--------------ccccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLHILS-----SE--------------YAKVPW 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~--~q~G~~vpa-----~~--------------~~~i~~ 497 (843)
.+..+..|..|. ..|+-++|+|||||||||+|++|++.... .+.+.|.-. .. ..++.+
T Consensus 86 ~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 467788898988 77788999999999999999999754322 111111100 00 000111
Q ss_pred HHH-----------------------------------HHhhcCc-hhhHhhhhhhhhHH-hHHHHHHHHhCCCCcEEEE
Q 003163 498 FDS-----------------------------------VFADIGD-EQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLL 540 (843)
Q Consensus 498 ~~~-----------------------------------i~~~ig~-~q~i~~~lstfS~~-~~~l~~il~~a~~p~LLLL 540 (843)
+.. ++..+|. ...+......||++ ++|++.+.++...|+||||
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 100 1111111 11222333456655 4556666677899999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHhcCC-eEEEEEccchhHH-hhhccccceeeeEE
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAESGS-LLTIATTHHGELK-TLKYSNDFFENACM 595 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~~g~-t~vlitTHd~el~-~~a~~~~~v~ng~v 595 (843)
||||+|||+.. ... +-++|..+.. + +++++|+.++. .+|.+++.+.++..
T Consensus 246 DEPtnhLDleA-~~w---Lee~L~k~d~~~-lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 246 DEPTNHLDLEA-IVW---LEEYLAKYDRII-LVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred cCCccCCCHHH-HHH---HHHHHHhccCce-EEEEecchhhhhhHhhhhheecccce
Confidence 99999999943 322 4456666655 6 89999999888 58888888776653
No 376
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=2.8e-13 Score=144.20 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred hhhhhHHhHHHHHHHHh-C----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003163 515 LSTFSGHLKQIGNIISQ-S----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 515 lstfS~~~~~l~~il~~-a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
...+|+++++...+... + .+|+++|||||++|+|+.....+. .++..+.+.|.+ +|++||+.++..+|+++..
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~-~~i~~~~~~g~~-vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVA-SYIREQAGPNFQ-FIVISLKEEFFSKADALVG 230 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHH-HHHHHhccCCcE-EEEEECCHHHHhhCCeEEE
Confidence 36678777666555543 3 358999999999999997777775 456666666787 9999999999888887765
Q ss_pred e
Q 003163 590 F 590 (843)
Q Consensus 590 v 590 (843)
+
T Consensus 231 ~ 231 (247)
T cd03275 231 V 231 (247)
T ss_pred E
Confidence 5
No 377
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.45 E-value=1.6e-13 Score=177.09 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=60.8
Q ss_pred hhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeee
Q 003163 516 STFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENA 593 (843)
Q Consensus 516 stfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng 593 (843)
..+|+++++ +..+.+++.+|++|||||||++||+.....+ ...+..+.. .|.| +|++||+.+....|+++..+.+|
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i-~~~L~~~~~~~g~T-vIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV-QKTINNLKGNENRI-TIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH-HHHHHHHhhcCCCE-EEEEeCCHHHHHhCCEEEEEeCC
Confidence 457776655 4555577999999999999999999666655 455566654 5777 99999999988999999999887
Q ss_pred E
Q 003163 594 C 594 (843)
Q Consensus 594 ~ 594 (843)
+
T Consensus 656 ~ 656 (1466)
T PTZ00265 656 E 656 (1466)
T ss_pred c
Confidence 4
No 378
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=2e-13 Score=140.78 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=82.3
Q ss_pred eeEEEecCCeEEEEEccCCCCchhhhhcccchhhhc----cccc----cccc-ccccc--------------cchH--HH
Q 003163 446 IDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL----HILS-SEYAK--------------VPWF--DS 500 (843)
Q Consensus 446 ~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~----~vpa-~~~~~--------------i~~~--~~ 500 (843)
.++.++-+..+.+|+||||+||||+|.+|....... .-|. ++.. ..... .... ..
T Consensus 13 ~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T cd03276 13 RHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDM 92 (198)
T ss_pred eeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHH
Confidence 345555233478999999999999999985321100 0010 0000 00000 0001 01
Q ss_pred HHhhcCchhhHhhhhhhhhHHhHHHHHHHH-h----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEE
Q 003163 501 VFADIGDEQSLSQSLSTFSGHLKQIGNIIS-Q----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIAT 574 (843)
Q Consensus 501 i~~~ig~~q~i~~~lstfS~~~~~l~~il~-~----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlit 574 (843)
+...+...........++|+++++...+.. + +.+|+++|||||++|+|+.....+...+.+...+ .+.++||++
T Consensus 93 ~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 93 ARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred HHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111111123334566788888877666543 3 4899999999999999997777776544444333 233239999
Q ss_pred ccchhHHhhhcccc
Q 003163 575 THHGELKTLKYSND 588 (843)
Q Consensus 575 THd~el~~~a~~~~ 588 (843)
||+++...-.+++.
T Consensus 173 th~~~~i~~~d~v~ 186 (198)
T cd03276 173 PQDISGLASSDDVK 186 (198)
T ss_pred CCccccccccccee
Confidence 99988775444443
No 379
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=1.9e-13 Score=162.73 Aligned_cols=157 Identities=22% Similarity=0.276 Sum_probs=112.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--ccc------------------ccccccccc------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG------------------LHILSSEYA------ 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--q~G------------------~~vpa~~~~------ 493 (843)
.+.++++++.. .+|++++|+||.||||||||+++++-...+ ..| .|++. +..
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q-dD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQ-DDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcc-ccccccccc
Confidence 47899999999 999999999999999999999996543211 111 11211 100
Q ss_pred ---------------------ccchHHHHHhhcCchhhHhhhhh-----hhh-HHhHHHHHHHHhCCCCcEEEEecCCCC
Q 003163 494 ---------------------KVPWFDSVFADIGDEQSLSQSLS-----TFS-GHLKQIGNIISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 494 ---------------------~i~~~~~i~~~ig~~q~i~~~ls-----tfS-~~~~~l~~il~~a~~p~LLLLDEP~sG 546 (843)
.-..++.+...+|.....+.-++ ..| |+.+|+.....++.+|++++|||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 00112344555555422222222 244 466777788889999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEecc
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~--el~~~a~~~~~v~ng~v~fd~~ 600 (843)
||......+. .+++.+++.|.| ||+|=|.+ ++..+.|+...+.+|.+.|.+.
T Consensus 201 LDS~sA~~vv-~~Lk~lA~~grt-Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 201 LDSFSALQVV-QLLKRLARSGRT-VICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred cchhhHHHHH-HHHHHHHhCCCE-EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9997777775 677788888997 99999985 5567889999999999998764
No 380
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.43 E-value=4.1e-13 Score=157.76 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=83.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------------------ccccccccccc--chH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYAKV--PWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------------------~~vpa~~~~~i--~~~ 498 (843)
+.+++|++|+ ++|+.++|+||||||||||+|+|.++.-.. .| .++|. +..-+ .+.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~i~g~~i~~~~~~lr~~i~~V~Q-~~~lF~~TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL-QGEVTLDGVSVSSLQDELRRRISVFAQ-DAHLFDTTVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhHHHHHHhheEEEcc-CcccccccHH
Confidence 4699999999 899999999999999999999996543211 11 12332 10000 011
Q ss_pred HH---------------HHhhcCchhhHhh---h--------hhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DS---------------VFADIGDEQSLSQ---S--------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~---------------i~~~ig~~q~i~~---~--------lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
++ .....+..+.+.. + -..+||+. +|+..+.+++.+|+++|||||||++|+..
T Consensus 426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11 1122222222221 1 12466655 55566667899999999999999999966
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
...+...+. .+ ..+.| +|++||..
T Consensus 506 e~~I~~~l~-~~-~~~~T-vIiItHrl 529 (529)
T TIGR02868 506 ESELLEDLL-AA-LSGKT-VVVITHHL 529 (529)
T ss_pred HHHHHHHHH-Hh-cCCCE-EEEEecCC
Confidence 666654443 33 24676 99999973
No 381
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.42 E-value=2.8e-13 Score=176.09 Aligned_cols=155 Identities=12% Similarity=0.070 Sum_probs=104.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHHH----------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV---------- 501 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~i---------- 501 (843)
+.++++++|+ +.|++++|+|||||||||||++|.+..... .| .|+|..... ...+.+++
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~-~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 729 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKY 729 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC-CcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHH
Confidence 5689999999 899999999999999999999996643211 11 133321000 00111111
Q ss_pred ----HhhcC-----------chhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHH-H
Q 003163 502 ----FADIG-----------DEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF-A 564 (843)
Q Consensus 502 ----~~~ig-----------~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L-~ 564 (843)
....+ +...+......+||++++. ..+.+.+.+|+++|||||++++|+.....+...+.... .
T Consensus 730 ~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~ 809 (1522)
T TIGR00957 730 YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809 (1522)
T ss_pred HHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhh
Confidence 11111 1111223335677766554 55556789999999999999999988887766665321 1
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 565 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.++.| +|++||+.++...||++..+.+|.+...
T Consensus 810 ~~~~t-vIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 810 LKNKT-RILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred hcCCE-EEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 24676 9999999999888999999999998654
No 382
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.41 E-value=6.7e-13 Score=141.53 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=57.4
Q ss_pred hhhhhhhHHhHHHHHHHHh-C----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 513 QSLSTFSGHLKQIGNIISQ-S----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~~-a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
.....+|+++++...+... + .+|+++||||||+|+|+.....+. .++..+. .|.+ +|++||+.++..+|+++
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~-~~l~~~~-~g~~-ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIG-RMIKTHF-KGSQ-FIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHc-CCCE-EEEEECCHHHHHhCCEE
Confidence 4456778877776665542 2 678999999999999997777765 4555554 4776 99999999999898887
Q ss_pred ccee
Q 003163 588 DFFE 591 (843)
Q Consensus 588 ~~v~ 591 (843)
..+.
T Consensus 239 ~~~~ 242 (251)
T cd03273 239 FRTR 242 (251)
T ss_pred EEEE
Confidence 6653
No 383
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.41 E-value=6.7e-13 Score=157.35 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=101.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i--~ 496 (843)
++.+.++++|. +.|+.++|+||+||||||+++.|..+.-. +.|. ++|. +..-+ .
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~V~Q-d~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLLFSGT 418 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCEehhhcCHHHHHHhccEEcc-cceeeccc
Confidence 57899999999 89999999999999999999999543221 1111 2221 10000 0
Q ss_pred hHHHH---------------HhhcCchhh-----------HhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSV---------------FADIGDEQS-----------LSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i---------------~~~ig~~q~-----------i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++ ....+..+. +..+-..+|++.+ ++..+.+.+.+|++++||||||++|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 11111 111111111 1112235676554 55555677899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
..-..+..++. .+. ++.| +|+++|.......||++..+.+|++...+
T Consensus 499 ~tE~~I~~~l~-~l~-~~rT-~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 499 ETEALIQDALK-KLL-KGRT-TLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred HhHHHHHHHHH-HHh-cCCE-EEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 66666655444 444 4556 78899998888889999999999976543
No 384
>PLN03232 ABC transporter C family member; Provisional
Probab=99.41 E-value=8.6e-13 Score=171.36 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=104.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHH----------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDS---------- 500 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~---------- 500 (843)
++++++|++|+ +.|+.++|+||+|||||||+++|.+.......+ .|+|..... .-.+-++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 35789999999 999999999999999999999996543221111 122221000 0001111
Q ss_pred ----HHhhcCchhhHh-----------hhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 501 ----VFADIGDEQSLS-----------QSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 501 ----i~~~ig~~q~i~-----------~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
+....+..+.+. ..-..+||+++ |+..+.+...+|+++|||||||++|+.....+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 111112222221 11234676654 55555677899999999999999999877777666555433
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 565 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.+.| +|++||.......+|++..+.+|.+...
T Consensus 789 -~~kT-~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 789 -KGKT-RVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred -cCCE-EEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 4677 9999999999999999999999998654
No 385
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=6.1e-13 Score=128.78 Aligned_cols=141 Identities=14% Similarity=0.115 Sum_probs=100.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-----------cccccccccccccccc-----------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-----------AKSGLHILSSEYAKVP----------- 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-----------~q~G~~vpa~~~~~i~----------- 496 (843)
++.+.+-+|+++ .+|+++-|+||+||||||||.-+++..-. .+.--.+|+ ....++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa-~qRq~GiLFQD~lLFph 91 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-AQRQIGILFQDALLFPH 91 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-hhhheeeeecccccccc
Confidence 467888889999 88999999999999999999987543210 000011222 111111
Q ss_pred ----------------------hHHHHHhhcCchhhHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 497 ----------------------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 497 ----------------------~~~~i~~~ig~~q~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
..+..+..+|......+...++||+.+ ++.....++..|.++|||||+|.||..-+.
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 112234556666666777778888765 445555678899999999999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHGELKT 582 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~el~~ 582 (843)
..-..+...++..|.. +|.+|||.+-+.
T Consensus 172 qfR~wVFs~~r~agiP-tv~VTHD~~Dvp 199 (213)
T COG4136 172 QFRQWVFSEVRAAGIP-TVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHhcCCC-eEEEecccccCC
Confidence 8777788888889998 899999976553
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.2e-12 Score=143.05 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=111.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc------ccccccc-cccchHHHHHhhc-------C-
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------HILSSEY-AKVPWFDSVFADI-------G- 506 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------~vpa~~~-~~i~~~~~i~~~i-------g- 506 (843)
+-...|+++ ..|+++.|+|.||||||||++.+.++.-+ |.|- ++.+... ..-..|..+|+++ |
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-qsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-CCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 334445555 67899999999999999999999654332 2232 2222100 0112344444433 1
Q ss_pred ----chhhHhhhhhh-------------h-----h-HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHH
Q 003163 507 ----DEQSLSQSLST-------------F-----S-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 563 (843)
Q Consensus 507 ----~~q~i~~~lst-------------f-----S-~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L 563 (843)
..+.+.+.+.. | | |+.+|++.+++++.+.+++++||-.+--||.-+......++-.+
T Consensus 416 e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 12344443321 2 2 67789999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 564 AESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 564 ~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
++.|.| |+++|||..-...||+...+.||.+..
T Consensus 496 K~qGKT-I~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 496 KEQGKT-IFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHhCCe-EEEEecCchhhhhHHHHHHHhcCceee
Confidence 999998 999999988888999999999999864
No 387
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.8e-13 Score=146.29 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=91.7
Q ss_pred cCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHH-hhcCc---------
Q 003163 439 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF-ADIGD--------- 507 (843)
Q Consensus 439 ~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~-~~ig~--------- 507 (843)
++.++.+..++|+ .=..-++|+||||.||||||+++.+- +-++.|-..-. ....+++|++.. ..+..
T Consensus 597 ~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk-l~P~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLq 674 (807)
T KOG0066|consen 597 PGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK-LDPNDGELRKN-HRLRIGWFDQHANEALNGEETPVEYLQ 674 (807)
T ss_pred CCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcC-CCCCcchhhcc-ceeeeechhhhhHHhhccccCHHHHHH
Confidence 3566777777777 32344799999999999999998321 12222322111 344667776543 12222
Q ss_pred ------hhhHhhhhhhh--------------hHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 003163 508 ------EQSLSQSLSTF--------------SGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 566 (843)
Q Consensus 508 ------~q~i~~~lstf--------------S~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~ 566 (843)
++.....+.+| ||+.+..+.+. ..+..|++|||||||++||.....+++.+| .++
T Consensus 675 r~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI----ney 750 (807)
T KOG0066|consen 675 RKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI----NEY 750 (807)
T ss_pred HhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH----Hhc
Confidence 22222333333 45544433333 447899999999999999998877776655 445
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEE
Q 003163 567 GSLLTIATTHHGELK-TLKYSNDFFENACM 595 (843)
Q Consensus 567 g~t~vlitTHd~el~-~~a~~~~~v~ng~v 595 (843)
.+. ||+||||..+. .-.+....++|..+
T Consensus 751 ~Gg-Vi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 751 NGG-VIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred cCc-EEEEecccceeeecCceEEEEccCCh
Confidence 555 89999997776 34444445555444
No 388
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=1.2e-12 Score=160.58 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=99.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-cccc---------cccccchH-----------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSS---------EYAKVPWF----------- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~---------~~~~i~~~----------- 498 (843)
+..|+++++|. +.|+.++|+|||||||||++.+|..+.-+ ..|.. +... ....++++
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI 443 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTI 443 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeechhhhcccH
Confidence 45789999999 99999999999999999999998433211 11111 0000 00111111
Q ss_pred -HHHHhh---------------cCchhhH---hhhhh--------hhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 499 -DSVFAD---------------IGDEQSL---SQSLS--------TFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 499 -~~i~~~---------------ig~~q~i---~~~ls--------tfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+++... -+..+.+ .+++. ++||+++ |++.+.+++.+|++||||||||+||+
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~- 522 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDA- 522 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCH-
Confidence 111000 0000111 11111 2566655 55555677999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
+...+....++... .|.| .|+++|.+...+-||.+..+++|.+..
T Consensus 523 ~se~~Vq~ALd~~~-~grT-TivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 523 ESERVVQEALDKAS-KGRT-TIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred HHHHHHHHHHHHhh-cCCe-EEEEeeehhhhhccCEEEEEECCEEEE
Confidence 55555566676644 4666 799999998888899999999999854
No 389
>PLN03130 ABC transporter C family member; Provisional
Probab=99.39 E-value=1.4e-12 Score=169.85 Aligned_cols=155 Identities=11% Similarity=0.112 Sum_probs=104.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------cccccccc---cc------c--c----h
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY---AK------V--P----W 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~---~~------i--~----~ 497 (843)
++++.+++|. +.|+.++|+||+||||||||++|.+.......| .|+|.... .. + + .
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~ 709 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPER 709 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHH
Confidence 5789999999 899999999999999999999996543221102 12222100 00 0 0 0
Q ss_pred HHHHHhhcCchhhH-----------hhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 498 FDSVFADIGDEQSL-----------SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 498 ~~~i~~~ig~~q~i-----------~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
+.++....+..+.+ ...-..+||+++ |+..+.+...+|+++|||||||++|+..+..+...++..+.
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-
Confidence 11111111222222 122235776655 55555677899999999999999999878777665555433
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 566 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 566 ~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
++.| +|++||.......+|++..+.+|.+...
T Consensus 789 ~~kT-vIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 789 RGKT-RVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred cCCE-EEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 4677 9999999999999999999999998754
No 390
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=9.9e-13 Score=129.71 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=98.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-------cccccccc---cc-------cccccchHHHH--
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-------AKSGLHIL---SS-------EYAKVPWFDSV-- 501 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-------~q~G~~vp---a~-------~~~~i~~~~~i-- 501 (843)
-+|+.+++|+ ..|+++++-||+|+||||+||++-+.... -+.|..+. +. ....++|+.++
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 3689999999 99999999999999999999999322111 11111110 00 01123333322
Q ss_pred --------------------------------HhhcCchhhH-hhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCC
Q 003163 502 --------------------------------FADIGDEQSL-SQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 502 --------------------------------~~~ig~~q~i-~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGl 547 (843)
+..++..+.+ ....+||||+.++...|. .++.+-.+|||||||+.|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 2333332222 224478998776666665 567888999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccce
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFF 590 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~a~~~~~v 590 (843)
|....+... .++..-+..|+. +|=+=||.+..+ .|++...+
T Consensus 184 Da~Nr~vVv-eli~e~Ka~GaA-lvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 184 DATNRAVVV-ELIREAKARGAA-LVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred cccchHHHH-HHHHHHHhcCce-EEEeeccHHHHHHHhhheeec
Confidence 997777765 566667888987 888999998884 66665433
No 391
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.38 E-value=1.1e-12 Score=133.23 Aligned_cols=131 Identities=20% Similarity=0.177 Sum_probs=78.6
Q ss_pred EEEEEccCCCCchhhhhcccchhhhcccc------c------ccccccccccch-HHHHHhhcCchhhHhhhhhhhhHHh
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMAKSG------L------HILSSEYAKVPW-FDSVFADIGDEQSLSQSLSTFSGHL 522 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~q~G------~------~vpa~~~~~i~~-~~~i~~~ig~~q~i~~~lstfS~~~ 522 (843)
+.+|+||||+|||++|..|+......... + .-+......+.+ |+..+..+.-.++ ..- +|+++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~-~~~---LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKV-EQI---LSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcC-ccc---CCHHH
Confidence 88999999999999999985432110000 0 000001111110 1111111100111 111 56666
Q ss_pred HHHHHHHHh-----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceee
Q 003163 523 KQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 592 (843)
Q Consensus 523 ~~l~~il~~-----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~n 592 (843)
++...+... +.+|+++|+|||++|+|+.....+. .++..+.+.|.+ +|++||+.+....++++..+..
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~-~~L~~~~~~g~t-iIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVS-DMIKEMAKHTSQ-FIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEECCHHHHhhCCeEEEEEE
Confidence 655544432 3689999999999999997777665 455566666776 9999999988888887776653
No 392
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=4.1e-13 Score=132.90 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=102.4
Q ss_pred EEEe-cCCeEEEEEccCCCCchhhhhcccchhh--------------------------hcccc-------------ccc
Q 003163 448 IFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--------------------------MAKSG-------------LHI 487 (843)
Q Consensus 448 isL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~--------------------------~~q~G-------------~~v 487 (843)
++.. ..|+++-++||||+||||||-.++++.- ++|.- ++.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 4444 5789999999999999999998865431 11110 011
Q ss_pred ccccccccchHHHHHhhcCchhhHhhhhhhhhHHh-HHHHHHHHh-------CCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 488 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQ-------STSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 488 pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~-~~l~~il~~-------a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
|+ ...-...+.+...++..+.+...++.+||+. +++..+... -....|+|+|||.++||.....++ ..+
T Consensus 98 P~--~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drl 174 (248)
T COG4138 98 PD--KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRL 174 (248)
T ss_pred ch--HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHH
Confidence 11 0111223445556667777778888888754 333322211 124479999999999999666665 689
Q ss_pred HHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003163 560 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~ 600 (843)
+..+...|.+ ||+++||.+.. +.|++...+..|.+...+.
T Consensus 175 l~~~c~~G~~-vims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 175 LSALCQQGLA-IVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred HHHHHhCCcE-EEEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 9999999998 99999998766 7888888888888876553
No 393
>PLN03130 ABC transporter C family member; Provisional
Probab=99.36 E-value=2e-12 Score=168.44 Aligned_cols=159 Identities=13% Similarity=0.020 Sum_probs=103.8
Q ss_pred hhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc
Q 003163 435 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY 492 (843)
Q Consensus 435 ~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~ 492 (843)
..+.++...|+++++|+ ++|+.++|+||+|||||||+++|.++.-.. .| .++|. +.
T Consensus 1245 f~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~-~G~I~IDG~dI~~i~l~~LR~~IsiVpQ-dp 1322 (1622)
T PLN03130 1245 LRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE-RGRILIDGCDISKFGLMDLRKVLGIIPQ-AP 1322 (1622)
T ss_pred EEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCEecccCCHHHHHhccEEECC-CC
Confidence 44433445799999999 899999999999999999999996442211 11 12232 10
Q ss_pred c--------ccchH--------HHHHhhcCchhhH-----------hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 A--------KVPWF--------DSVFADIGDEQSL-----------SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~--------~i~~~--------~~i~~~ig~~q~i-----------~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. .+.++ .+.+...+..+.+ ..+-..+|++++|+ ..+.+++.+|++|||||||
T Consensus 1323 ~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEAT 1402 (1622)
T PLN03130 1323 VLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEAT 1402 (1622)
T ss_pred ccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 0 00000 0111112222222 12223577766555 4445678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
|++|+..-. .....++... .++| +|+++|..+...-+|++..+.+|++...
T Consensus 1403 SaLD~~Te~-~Iq~~I~~~~-~~~T-vI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1403 AAVDVRTDA-LIQKTIREEF-KSCT-MLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCCCHHHHH-HHHHHHHHHC-CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999995544 4444554432 4677 9999999999888999999999998643
No 394
>PLN03232 ABC transporter C family member; Provisional
Probab=99.36 E-value=1.6e-12 Score=168.88 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=103.7
Q ss_pred hhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc
Q 003163 435 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY 492 (843)
Q Consensus 435 ~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~ 492 (843)
..+.++...|++|++|+ ++|+.++|+||+|||||||+++|.++.-. ..| .++|. +.
T Consensus 1242 f~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~~G~I~IdG~di~~i~~~~lR~~i~iVpQ-dp 1319 (1495)
T PLN03232 1242 LRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-EKGRIMIDDCDVAKFGLTDLRRVLSIIPQ-SP 1319 (1495)
T ss_pred EEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCceEEECCEEhhhCCHHHHHhhcEEECC-CC
Confidence 34433446799999999 89999999999999999999999644211 111 12232 10
Q ss_pred c--------ccchH--------HHHHhhcCchhhHh-----------hhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 A--------KVPWF--------DSVFADIGDEQSLS-----------QSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~--------~i~~~--------~~i~~~ig~~q~i~-----------~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. .+.++ .+.+...+..+.+. .+-..+|++++|+ ..+.+++.+|++|||||||
T Consensus 1320 ~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEAT 1399 (1495)
T PLN03232 1320 VLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEAT 1399 (1495)
T ss_pred eeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 00000 01112222222221 2223577766555 4445678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
|++|+..-..+ ...++... .++| +|+++|..+....+|++..+.+|++...
T Consensus 1400 SaLD~~Te~~I-q~~L~~~~-~~~T-vI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1400 ASVDVRTDSLI-QRTIREEF-KSCT-MLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred ccCCHHHHHHH-HHHHHHHc-CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999554444 44444432 4677 9999999999888999999999998643
No 395
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.36 E-value=2.3e-12 Score=167.22 Aligned_cols=156 Identities=18% Similarity=0.114 Sum_probs=103.4
Q ss_pred hhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------cccccccc
Q 003163 436 SALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA 493 (843)
Q Consensus 436 ~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~ 493 (843)
.+.++...|+++++|+ ++|+.++|+|++|||||||+++|.++.- ..|. ++|. +..
T Consensus 1226 ~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQ-dp~ 1302 (1490)
T TIGR01271 1226 KYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQ-KVF 1302 (1490)
T ss_pred EeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeC-CCc
Confidence 3433456899999999 8899999999999999999999976532 2232 2222 100
Q ss_pred --------ccchH--------HHHHhhcCchhhHhh-----------hhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCC
Q 003163 494 --------KVPWF--------DSVFADIGDEQSLSQ-----------SLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 494 --------~i~~~--------~~i~~~ig~~q~i~~-----------~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~s 545 (843)
.+..+ ...+...+..+.+.. +-..||++.+++ ..+.+++.+|++|||||||+
T Consensus 1303 LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS 1382 (1490)
T TIGR01271 1303 IFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSA 1382 (1490)
T ss_pred cCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 00000 011222222222211 112577766555 45556789999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 546 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 546 GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
++|+..-..+ ...+.... .++| ||++||..+....+|++..+.+|++..
T Consensus 1383 ~lD~~Te~~I-~~~L~~~~-~~~T-vI~IaHRl~ti~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1383 HLDPVTLQII-RKTLKQSF-SNCT-VILSEHRVEALLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred cCCHHHHHHH-HHHHHHHc-CCCE-EEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999554444 44444332 3677 999999999888899999999999863
No 396
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.35 E-value=2.7e-12 Score=140.93 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=105.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch-------hhhccc--cc----ccc---------ccccc----c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA-------VMMAKS--GL----HIL---------SSEYA----K 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli-------~~~~q~--G~----~vp---------a~~~~----~ 494 (843)
..+.++++|+ ..|+.++|+|.+|||||||=.+|..+ .+.++. |. ..| ...++ +
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 4578899999 88899999999999999997776321 111110 00 000 00000 0
Q ss_pred cch-----------------------HHHHHhhcCch-hhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 495 VPW-----------------------FDSVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 495 i~~-----------------------~~~i~~~ig~~-q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+ .-..+...|.. .....+...|||+.++ ++.+.+++.+|.+++||||||+||-
T Consensus 380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~ 459 (534)
T COG4172 380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR 459 (534)
T ss_pred cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence 000 01123334432 3445566789987655 4555567899999999999999998
Q ss_pred hhHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003163 550 LEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~~ 600 (843)
...+-...+++.|.++ |.+ -+|+|||+... .+|++++.+.+|.+...+.
T Consensus 460 -SVQaQvv~LLr~LQ~k~~Ls-YLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 460 -SVQAQVLDLLRDLQQKHGLS-YLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred -HHHHHHHHHHHHHHHHhCCe-EEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 4444445778877754 776 89999999887 5999999999999986654
No 397
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.35 E-value=3.5e-12 Score=164.77 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=60.4
Q ss_pred hhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceee--
Q 003163 517 TFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFEN-- 592 (843)
Q Consensus 517 tfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~~~a~~~~~v~n-- 592 (843)
.+||++ +|++.+.+++.+|++||||||||+||+.....+. ..+..+. ..+.| +|++||.......||++..+.+
T Consensus 1358 ~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~-~~L~~~~~~~~~T-vIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE-KTIVDIKDKADKT-IITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhccCCCE-EEEEechHHHHHhCCEEEEEeCCC
Confidence 466655 5556566779999999999999999996655554 4445454 34777 9999999999999999999998
Q ss_pred --eEEE
Q 003163 593 --ACME 596 (843)
Q Consensus 593 --g~v~ 596 (843)
|++.
T Consensus 1436 ~~G~iv 1441 (1466)
T PTZ00265 1436 RTGSFV 1441 (1466)
T ss_pred CCCCEE
Confidence 7743
No 398
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.6e-12 Score=150.26 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=102.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc------ccccc----ccccc------------h
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------ILSSE----YAKVP------------W 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~------vpa~~----~~~i~------------~ 497 (843)
+..|++|++|+ ++|++++|+|||||||||+...|-. .|.+..|.. +..-+ ...++ +
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~r-fY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLR-FYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 45799999999 9999999999999999999998822 222222211 10000 00011 0
Q ss_pred HHHHHhh---cC------------chh-----------hHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSVFAD---IG------------DEQ-----------SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i~~~---ig------------~~q-----------~i~~~lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
-++|.-. .+ ..+ .+...-+++||++ +|++.+.+++.+|.+|||||-||+||.
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa- 637 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA- 637 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch-
Confidence 1111100 00 000 1111113456655 556666678999999999999999998
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+...+....++.+.+. .| ||++.|...-.+-|+.+..+.+|++...+
T Consensus 638 eSE~lVq~aL~~~~~~-rT-VlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 638 ESEYLVQEALDRLMQG-RT-VLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred hhHHHHHHHHHHhhcC-Ce-EEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 6666656666665543 66 99999999999999999999999998654
No 399
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.33 E-value=3.1e-12 Score=166.53 Aligned_cols=159 Identities=13% Similarity=-0.035 Sum_probs=102.7
Q ss_pred hhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc
Q 003163 435 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY 492 (843)
Q Consensus 435 ~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~ 492 (843)
..+-++...|+++++|+ ++|+.++|+||+|||||||+++|..+.-.. .| .++|. +.
T Consensus 1292 f~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~-~G~I~IdG~dI~~i~~~~LR~~i~iVpQ-dp 1369 (1522)
T TIGR00957 1292 LRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA-EGEIIIDGLNIAKIGLHDLRFKITIIPQ-DP 1369 (1522)
T ss_pred EEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC-CCeEEECCEEccccCHHHHHhcCeEECC-CC
Confidence 33333335799999999 899999999999999999999995432111 11 12232 10
Q ss_pred c--------ccchH--------HHHHhhcCchhhH-----------hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCC
Q 003163 493 A--------KVPWF--------DSVFADIGDEQSL-----------SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIG 544 (843)
Q Consensus 493 ~--------~i~~~--------~~i~~~ig~~q~i-----------~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~ 544 (843)
. .+..+ .+.+...+..+.+ ..+-..||++++|+ ..+.+++.+|++|||||||
T Consensus 1370 ~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaT 1449 (1522)
T TIGR00957 1370 VLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449 (1522)
T ss_pred cccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0 00000 0111112222211 11223577766554 5555678999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
|++|+.. .......++... .++| +|+++|..+....+|++..+.+|++...
T Consensus 1450 SalD~~T-e~~Iq~~l~~~~-~~~T-vI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1450 AAVDLET-DNLIQSTIRTQF-EDCT-VLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred ccCCHHH-HHHHHHHHHHHc-CCCE-EEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999954 444444444332 4677 9999999999999999999999998643
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.32 E-value=6.9e-12 Score=139.37 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=104.5
Q ss_pred eEEEe------cCCeEEEEEccCCCCchhhhhcccchhhhccc------cccccc----cccccc---------------
Q 003163 447 DIFIA------RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS------GLHILS----SEYAKV--------------- 495 (843)
Q Consensus 447 disL~------~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~------G~~vpa----~~~~~i--------------- 495 (843)
+|.|+ ..|++++++||||-|||||.|++++..-.... -+|-|. .....+
T Consensus 354 ~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s 433 (591)
T COG1245 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS 433 (591)
T ss_pred ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccc
Confidence 55555 45789999999999999999999765433211 011121 000011
Q ss_pred chHHHHHhhcCchhhHhhhhhhhhH-HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEE
Q 003163 496 PWFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 574 (843)
Q Consensus 496 ~~~~~i~~~ig~~q~i~~~lstfS~-~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlit 574 (843)
.+...++.-+..+.-+++.+..+|| ++++++.++++..+.+|.|||||.+.||..++...+..|-+...+.+.+ .+++
T Consensus 434 ~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kt-a~vV 512 (591)
T COG1245 434 YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT-ALVV 512 (591)
T ss_pred hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCce-EEEE
Confidence 1123345556677778888888885 6788888888999999999999999999988888877666665666776 8999
Q ss_pred ccchhHHhhhccccceeeeEEEEecc
Q 003163 575 THHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 575 THd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
-||..+..| +.+.-|.|.++
T Consensus 513 dHDi~~~dy------vsDr~ivF~Ge 532 (591)
T COG1245 513 DHDIYMIDY------VSDRLIVFEGE 532 (591)
T ss_pred ecceehhhh------hhceEEEEecC
Confidence 999998854 45555666653
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=3.4e-12 Score=133.22 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=50.7
Q ss_pred hhhhhhHHhHHHHHHHHh-----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-C-CeEEEEEccch-hHHhhhc
Q 003163 514 SLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-G-SLLTIATTHHG-ELKTLKY 585 (843)
Q Consensus 514 ~lstfS~~~~~l~~il~~-----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g-~t~vlitTHd~-el~~~a~ 585 (843)
...++|++++++..+..+ +.+|+++|+|||++|+||.....+. .++..+.+. | .+ +|++||+. +...+++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~-~~l~~~~~~~g~~~-viiith~~~~~~~~~~ 200 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVF-DMLVETACKEGTSQ-YFLITPKLLPGLNYHE 200 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHH-HHHHHHhhcCCCce-EEEEchhhccCCcccC
Confidence 445788888887554432 5899999999999999997777775 455555554 5 45 88899885 4445654
Q ss_pred c
Q 003163 586 S 586 (843)
Q Consensus 586 ~ 586 (843)
+
T Consensus 201 ~ 201 (213)
T cd03277 201 K 201 (213)
T ss_pred c
Confidence 3
No 402
>PTZ00243 ABC transporter; Provisional
Probab=99.31 E-value=7e-12 Score=163.14 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=101.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA---- 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~---- 493 (843)
+...|+++++|+ ++|+.++|+|++|||||||+++|.++.-.. .| .++|. +..
T Consensus 1321 ~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~-~G~I~IDG~di~~i~l~~LR~~I~iVpQ-dp~LF~g 1398 (1560)
T PTZ00243 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC-GGEIRVNGREIGAYGLRELRRQFSMIPQ-DPVLFDG 1398 (1560)
T ss_pred CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEcccCCHHHHHhcceEECC-CCccccc
Confidence 335699999999 889999999999999999999995442211 11 12332 100
Q ss_pred ----ccchH--------HHHHhhcCchhhHh-----------hhhhhhhHHhHHHHHHH-HhCCC-CcEEEEecCCCCCC
Q 003163 494 ----KVPWF--------DSVFADIGDEQSLS-----------QSLSTFSGHLKQIGNII-SQSTS-QSLVLLDEIGAGTN 548 (843)
Q Consensus 494 ----~i~~~--------~~i~~~ig~~q~i~-----------~~lstfS~~~~~l~~il-~~a~~-p~LLLLDEP~sGlD 548 (843)
.+..+ ...+...+..+.+. .+-..+|++++|+..++ +++.+ |++||||||||++|
T Consensus 1399 TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD 1478 (1560)
T PTZ00243 1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 (1560)
T ss_pred cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCC
Confidence 00000 01122222222221 12245787776665555 55664 89999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 549 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 549 p~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+..-..+ ...+.... .++| +|+++|..+....+|++..+.+|++...
T Consensus 1479 ~~te~~I-q~~L~~~~-~~~T-vI~IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1479 PALDRQI-QATVMSAF-SAYT-VITIAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred HHHHHHH-HHHHHHHC-CCCE-EEEEeccHHHHHhCCEEEEEECCEEEEE
Confidence 9555544 44444432 3677 9999999999999999999999998643
No 403
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.31 E-value=3.8e-12 Score=122.34 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=63.1
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccc--cccc----
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVP---- 496 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~--~~i~---- 496 (843)
++++++. ..|++++|+|||||||||||++|.+...... |. +++.... ....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~-G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDS-GSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESE-EEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence 3678888 8889999999999999999999976543211 11 1111000 0000
Q ss_pred ----hHHHHHhhcCchhhHhhhh----hhhhHHhHH-HHHHHHhCCCCcEEEEecCCC
Q 003163 497 ----WFDSVFADIGDEQSLSQSL----STFSGHLKQ-IGNIISQSTSQSLVLLDEIGA 545 (843)
Q Consensus 497 ----~~~~i~~~ig~~q~i~~~l----stfS~~~~~-l~~il~~a~~p~LLLLDEP~s 545 (843)
.+..++..++........+ ..+|+++++ +..+.+++.+|+++||||||+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1122344444443333344 788876654 555567789999999999986
No 404
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.30 E-value=1.8e-11 Score=125.18 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=140.2
Q ss_pred hhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCC
Q 003163 52 ESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLTGV 119 (843)
Q Consensus 52 ~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~~~~i 119 (843)
.|++.||+- .+...+.. |.|++|++.++.|+..|..+.++++.+++.+.++.. .+. .+....+.++
T Consensus 2 ~Tl~~L~i~~~~~~~~~~~sL~~~ln~-t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~-~~~~~~l~~~ 79 (204)
T PF05192_consen 2 NTLKSLEIFENSRSGKKKGSLFSLLNR-TSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELR-EELRSILKKI 79 (204)
T ss_dssp HHHHHTTSSSBTTTSSSSTSHHHHH----SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHH-HHHHHHHTTC
T ss_pred hhHHhccCCCCCCCCCCCCcHHHHHhc-CCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHh-hhhhhhhhcc
Confidence 355555555 58888855 999999999999654557899999999999999996 111 1112236677
Q ss_pred CchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhhhcCC
Q 003163 120 DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199 (843)
Q Consensus 120 ~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~~id~ 199 (843)
. |+...+.++..|. .++.++..+..++..+..+++++.. .+...|.|..+...+.++..+.+.|..+||+
T Consensus 80 ~--di~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~i~~~~~~-------~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~ 149 (204)
T PF05192_consen 80 P--DIERILKRLRSGR-ASPQDLLKLYKTLRSIIEIKKLLSE-------RLESSPLLRKLLSSLPDFSELLDEIESTIDE 149 (204)
T ss_dssp ---SHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHC-------TSSSTHHHHHHHHHHCSHHHHHHHHHHHBHT
T ss_pred c--hHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHh-------hcccHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6 4888999987764 4899999999999999888765321 1112256788888888888999999999998
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCEEEEEecCCCcccceEEecccCceeEEee
Q 003163 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSGIGSVIEP 279 (843)
Q Consensus 200 ~G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR~vipVk~~~k~~~giv~~~sg~t~~iEP 279 (843)
++...+..+..++.
T Consensus 150 ~~~~~~~~~~~I~~------------------------------------------------------------------ 163 (204)
T PF05192_consen 150 DKSLAIREQDIIRD------------------------------------------------------------------ 163 (204)
T ss_dssp S-CCHCTTSSSBST------------------------------------------------------------------
T ss_pred CcHHHHhcccHHHH------------------------------------------------------------------
Confidence 74333322210000
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003163 280 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 336 (843)
Q Consensus 280 ~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~ 336 (843)
+..++.+|+.+|+..+..+.+.|..+.+++++||+++|+|+
T Consensus 164 ----------------~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 164 ----------------INDEEQRILRELTNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp ----------------HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999999999999999999986
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.1e-11 Score=152.76 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=68.4
Q ss_pred HhhhhhhhhHHhHHHHHHH-HhCC---CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 511 LSQSLSTFSGHLKQIGNII-SQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~il-~~a~---~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+...++|+++++...++ .++. +|+|+||||||+|||+.+...+. .++..+.+.|.| ||++||++++...|++
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~~G~T-VIvi~H~~~~i~~aD~ 899 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVDQGNT-VVVIEHNLDVIKTADY 899 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhCCE
Confidence 4556678888776655554 4443 58999999999999998887775 566677777887 9999999998888888
Q ss_pred ccce------eeeEEEEec
Q 003163 587 NDFF------ENACMEFDE 599 (843)
Q Consensus 587 ~~~v------~ng~v~fd~ 599 (843)
++.+ .+|.+.+.+
T Consensus 900 ii~Lgp~~G~~gG~iv~~G 918 (924)
T TIGR00630 900 IIDLGPEGGDGGGTIVASG 918 (924)
T ss_pred EEEecCCccCCCCEEEEeC
Confidence 8888 688887653
No 406
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.30 E-value=1.3e-11 Score=135.65 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=104.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-c---ccccc---------ccc-----ccccccch-H--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGLH---------ILS-----SEYAKVPW-F-- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~---q~G~~---------vpa-----~~~~~i~~-~-- 498 (843)
...+.++++|+ ..|+.++|+|.+|||||++..+|..+... + ..|.. .+. -.+..+++ |
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 45689999999 88999999999999999998887433211 0 00000 000 00011110 0
Q ss_pred ------------H----------------------HHHhhcCch---hhHhhhhhhhhHHh-HHHHHHHHhCCCCcEEEE
Q 003163 499 ------------D----------------------SVFADIGDE---QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLL 540 (843)
Q Consensus 499 ------------~----------------------~i~~~ig~~---q~i~~~lstfS~~~-~~l~~il~~a~~p~LLLL 540 (843)
. .++...|.. ..+..+...+||+. +++..+++++++|+|||-
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIA 181 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181 (534)
T ss_pred cccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEee
Confidence 0 122233332 23444455677655 556666788999999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||||++||..-.+.+. .+++.|.. .|.. ++++|||..+. .+|+++..|..|.+...
T Consensus 182 DEPTTALDVtvQaQIL-~Ll~~Lq~~~gMa-~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 182 DEPTTALDVTVQAQIL-DLLKELQAELGMA-ILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cCCcchhhhhhHHHHH-HHHHHHHHHhCcE-EEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 9999999996666664 56666654 5887 99999999888 59999999999998643
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.26 E-value=2e-11 Score=135.69 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=99.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccc-----------------------------------------cccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----------------------------------------ILSS 490 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-----------------------------------------vpa~ 490 (843)
.+|++++|+||||-||||.+|++++..... .|-+ +|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 789999999999999999999997643221 1111 1100
Q ss_pred c----------ccccchHHHHHhhcCchhhHhhhhhhhhH-HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 491 E----------YAKVPWFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 491 ~----------~~~i~~~~~i~~~ig~~q~i~~~lstfS~-~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
- ...-+.++.+...++....+...++.+|| ++++++.+++++.+.+++++|||+|-||..++...+. +
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar-~ 255 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR-V 255 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH-H
Confidence 0 00113345566677778888888899986 6778888888899999999999999999999998875 4
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 560 LEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 560 le~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
+..|.+.+.+ ||++.||+....|-.+.+.+
T Consensus 256 Irel~~~~k~-ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 256 IRELAEDGKY-VIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred HHHHhccCCe-EEEEechHHHHHHhhheeEE
Confidence 5556665777 99999999887654444333
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.25 E-value=3e-11 Score=155.17 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=71.0
Q ss_pred cCchhh-HhhhhhhhhHHhHHHHHHHHhC----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 505 IGDEQS-LSQSLSTFSGHLKQIGNIISQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 505 ig~~q~-i~~~lstfS~~~~~l~~il~~a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
+|.... +.+...++|+++++...++..+ .+|+++||||||+|||+.+...+. .++..+.+.|.| ||++||+++
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~T-VIiIsHdl~ 873 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHT-VVIIEHNMH 873 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHH
Confidence 444432 4566678888877766665443 589999999999999998888775 566778888887 999999998
Q ss_pred HHhhhcccccee------eeEEEEe
Q 003163 580 LKTLKYSNDFFE------NACMEFD 598 (843)
Q Consensus 580 l~~~a~~~~~v~------ng~v~fd 598 (843)
+..+++++..+. +|.+.+.
T Consensus 874 ~i~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 874 VVKVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred HHHhCCEEEEEccCCCCCCCEEEEe
Confidence 888899888884 5666554
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.23 E-value=4.9e-11 Score=147.24 Aligned_cols=87 Identities=18% Similarity=0.124 Sum_probs=68.6
Q ss_pred HhhhhhhhhHHhHHHHHH-HHhCCCC---cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 511 LSQSLSTFSGHLKQIGNI-ISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~i-l~~a~~p---~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+...++|+++++...+ .+++.+| +++||||||+|||+.+...+. .++..+.+.|.| ||++||++++...|++
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~~G~T-VIiitH~~~~i~~aD~ 901 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVDKGNT-VVVIEHNLDVIKTADW 901 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCHHHHHhCCE
Confidence 345567788877655554 4556777 899999999999998888775 566677777887 9999999998888998
Q ss_pred ccce------eeeEEEEec
Q 003163 587 NDFF------ENACMEFDE 599 (843)
Q Consensus 587 ~~~v------~ng~v~fd~ 599 (843)
+..+ .+|.+.+.+
T Consensus 902 ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 902 IIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred EEEecCCcCCCCCEEEEeC
Confidence 8888 578887654
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.6e-11 Score=136.70 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=94.7
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchH-----------------------
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF----------------------- 498 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~----------------------- 498 (843)
.+...++++ .-..-++++|+||.||||++|++.+- .-+..|...-. ...++.+|
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~-l~~~rgi~~~~-~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~p 455 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGD-LTPTRGIVGRH-PRLRIKYFAQHHVDFLDKNVNAVDFMEKSFP 455 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhcc-CCcccceeeec-ccceecchhHhhhhHHHHHhHHHHHHHHhCC
Confidence 344445544 22233689999999999999998421 11111111000 11122222
Q ss_pred -------HHHHhhcCchh-hHhhhhhhhhHHhH-HHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCe
Q 003163 499 -------DSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 569 (843)
Q Consensus 499 -------~~i~~~ig~~q-~i~~~lstfS~~~~-~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t 569 (843)
...+..+|... ...+.+.++||+++ +++.+.....+|.||+|||||+.||-....+++ +.|...++.
T Consensus 456 G~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GG 531 (582)
T KOG0062|consen 456 GKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALA----KALKNFNGG 531 (582)
T ss_pred CCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHH----HHHHhcCCc
Confidence 12344556543 33445677887665 566666678999999999999999986665555 445666665
Q ss_pred EEEEEccchhHHh-hhccccceeeeEEE
Q 003163 570 LTIATTHHGELKT-LKYSNDFFENACME 596 (843)
Q Consensus 570 ~vlitTHd~el~~-~a~~~~~v~ng~v~ 596 (843)
||+||||.++.. .|.....+.+|.|.
T Consensus 532 -Vv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 532 -VVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred -EEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 999999999985 78888899998885
No 411
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.2e-11 Score=134.51 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=101.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccc--------hhhhcc-------------ccccccccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL--------AVMMAK-------------SGLHILSSEYAKV-- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igl--------i~~~~q-------------~G~~vpa~~~~~i-- 495 (843)
.+++|+.|++|. .+|+.++|+||+|+||||++|.+-. +.+.+| .| .+|. +..-+
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQ-DtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQ-DTVLFND 626 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccC-cceeecc
Confidence 578999999999 8999999999999999999998831 222111 22 2343 11100
Q ss_pred chH------------HHHHhh---cCchhhH------------hhhhhhhhH-HhHHHHHHHHhCCCCcEEEEecCCCCC
Q 003163 496 PWF------------DSVFAD---IGDEQSL------------SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 496 ~~~------------~~i~~~---ig~~q~i------------~~~lstfS~-~~~~l~~il~~a~~p~LLLLDEP~sGl 547 (843)
.++ +.+++. -+..+.+ +.++ .+|| +.+|++.+...+..|.++||||.||+|
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 000 011110 0011111 1222 2454 455566666678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
|...-.++ .+-+..+.... | .|++.|-..-..-||.+..+.||++...+
T Consensus 706 DT~tER~I-QaaL~rlca~R-T-tIVvAHRLSTivnAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 706 DTNTERAI-QAALARLCANR-T-TIVVAHRLSTIVNADLILVISNGRIVERG 754 (790)
T ss_pred CCccHHHH-HHHHHHHhcCC-c-eEEEeeeehheecccEEEEEeCCeEeecC
Confidence 99777766 56667777654 4 58888988888888999999999997543
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=4e-11 Score=147.53 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-------ccccccccccc-ccc---------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEY-AKV--------------- 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q~G~~vpa~~~-~~i--------------- 495 (843)
+.+.+++|++=- .+|.+++|+|++||||||||++|++-.-++ -.|.+.+.... ...
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 345567777644 778999999999999999999996432111 12222221000 001
Q ss_pred ----------------------chHHHHHhhcCchhhHhhhh----hhhhHHhHHHHHH-HHhCCCC-cEEEEecCCCCC
Q 003163 496 ----------------------PWFDSVFADIGDEQSLSQSL----STFSGHLKQIGNI-ISQSTSQ-SLVLLDEIGAGT 547 (843)
Q Consensus 496 ----------------------~~~~~i~~~ig~~q~i~~~l----stfS~~~~~l~~i-l~~a~~p-~LLLLDEP~sGl 547 (843)
.+++++...++..+--+.-+ +.+|.++++...| ..++.+| +||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 12333444444332211111 2245555444444 4567788 999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhcccccee-eeEEEEe
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKYSNDFFE-NACMEFD 598 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el--~~~a~~~~~v~-ng~v~fd 598 (843)
|.... +....+++.+.+.|.+ ||+|-|.+.. .+.-|+...+. .|++.+-
T Consensus 962 DsqaA-~~i~~~lrkla~tGqt-IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 962 DSQAA-AIVMRFLRKLADTGQT-ILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred cHHHH-HHHHHHHHHHHhcCCe-EEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 98544 4556788999999998 9999998644 45556665554 3556553
No 413
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.12 E-value=3.1e-10 Score=115.20 Aligned_cols=154 Identities=19% Similarity=0.233 Sum_probs=98.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------c----------c--cccccc------ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------S----------G--LHILSS------EYA 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------~----------G--~~vpa~------~~~ 493 (843)
..++..||+++ +.|.-+.++|.||+|||||||++++-.+... . | .|.-.. -..
T Consensus 26 ~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 26 SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 34788899999 7777789999999999999999965322110 0 0 000000 000
Q ss_pred ------ccchHHHHHhhcC-ch-h---hHhh--------hhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 494 ------KVPWFDSVFADIG-DE-Q---SLSQ--------SLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 494 ------~i~~~~~i~~~ig-~~-q---~i~~--------~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.++...-+| .++ +. + .+.. .+...|.+.++. ...+.++.+=.+|||||.|--||...++
T Consensus 106 evplq~D~sae~mif-gV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARa 184 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIF-GVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARA 184 (291)
T ss_pred cccccccccHHHHHh-hccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHH
Confidence 111111111 111 11 0 0000 112344444444 4445567777999999999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEE
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACME 596 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd-~el~~~a~~~~~v~ng~v~ 596 (843)
.+..-+-+.-.++|+| |+..||. ..+...+.+...+.+|.+.
T Consensus 185 dLLeFlkeEce~Rgat-IVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 185 DLLEFLKEECEQRGAT-IVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred HHHHHHHHHHhhcCcE-EEEEeeeccchhhcchhEEEecCCeee
Confidence 8876666666678997 9999995 5677888888899998886
No 414
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.12 E-value=5.3e-10 Score=111.73 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=99.3
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccc---------------------ccccccccch---H
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------------------LSSEYAKVPW---F 498 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~v---------------------pa~~~~~i~~---~ 498 (843)
+...++|+ +.|+.++|+|.||||||||.|+|+++.-... |-.. ....+..+.. .
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-ceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 45667777 6778899999999999999999976543221 1100 0000000000 0
Q ss_pred HHH-------HhhcCchh---hHhh--------------hhhhhh-HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 499 DSV-------FADIGDEQ---SLSQ--------------SLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 499 ~~i-------~~~ig~~q---~i~~--------------~lstfS-~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.++ .+++..++ .+.. ....++ ++.++++.+.++.-+|+++|.||..++||..-..
T Consensus 107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs 186 (267)
T COG4167 107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS 186 (267)
T ss_pred hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence 011 11121111 1111 111222 4566777777888999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEecc
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~-el~~~a~~~~~v~ng~v~fd~~ 600 (843)
.+....++.-.+.|.+ .|.||.+. -++.++|.+..+..|.|...+.
T Consensus 187 Ql~NL~LeLQek~GiS-yiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 187 QLINLMLELQEKQGIS-YIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCce-EEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 8887777765566887 67777654 5567999999999998875543
No 415
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=134.33 Aligned_cols=147 Identities=17% Similarity=0.120 Sum_probs=93.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc---------ccccccccccccch------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---------GLHILSSEYAKVPW------------ 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~---------G~~vpa~~~~~i~~------------ 497 (843)
++.+..+++++. +.|+-+.|+||||+|||||+|+|+++-..+.. -+|+|.......+-
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 345777888888 77788999999999999999999876432221 12333211110000
Q ss_pred ------HHHHHhhcCchhhHhh------hhhhhh-HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 498 ------FDSVFADIGDEQSLSQ------SLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 498 ------~~~i~~~ig~~q~i~~------~lstfS-~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
..+++...|..+-+.. .-..+| |+.++++.+..++++|++++|||-|+++|+..-..+...+.+.|
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-
Confidence 1122333333322211 112233 56777888888899999999999999999955555543332222
Q ss_pred hcCCeEEEEEccchhHHhhhccccc
Q 003163 565 ESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
.++| ||-|+|-..+..+..+...
T Consensus 563 -p~~t-vISV~Hr~tl~~~h~~~l~ 585 (604)
T COG4178 563 -PDAT-VISVGHRPTLWNFHSRQLE 585 (604)
T ss_pred -CCCE-EEEeccchhhHHHHhhhee
Confidence 4676 9999999988877665433
No 416
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=3.1e-10 Score=139.85 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=101.3
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc---------------------ccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------------------ILSSEYA--KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~---------------------vpa~~~~--~i~ 496 (843)
+..|+++++|+ +.|+.++|+||+||||||.+-+|-.+ |.+..|.. |.. +.. .-.
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ-EP~LF~~T 1079 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERF-YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ-EPVLFNGT 1079 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-cCCCCCeEEECCcccccCCHHHHHHhcceecc-Cchhhccc
Confidence 56799999999 89999999999999999998887211 11111110 000 000 000
Q ss_pred hHHHHHhhc-C-chh----------------hHhhhh--------hhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSVFADI-G-DEQ----------------SLSQSL--------STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i~~~i-g-~~q----------------~i~~~l--------stfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++.-.. . .++ ++-+++ .++||++ +|++.+.+.+.+|++|||||-||+||.
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 111111100 0 000 111111 2456655 556666677999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+...+...-++.... |.| +|++.|-+...+-||.+..+.||.+...+
T Consensus 1160 -eSErvVQeALd~a~~-gRT-~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1160 -ESERVVQEALDRAME-GRT-TIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred -hhHHHHHHHHHHhhc-CCc-EEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 666666777777554 566 89999999999999999999999998654
No 417
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=1.6e-10 Score=125.29 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=55.0
Q ss_pred hhHHhHHHHHHH-Hh--C--CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceee
Q 003163 518 FSGHLKQIGNII-SQ--S--TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 592 (843)
Q Consensus 518 fS~~~~~l~~il-~~--a--~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~n 592 (843)
+|+++++...+. .. + .+|+++|||||++|+|+.....+.. ++..+.. +.+ +|++||++.+..++++...+.+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~-~l~~~~~-~~t-ii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGK-KLKELSR-SHQ-VLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCE-EEEEechHHHHHhcCcEEEEEE
Confidence 566666554443 22 2 3999999999999999977777754 4455544 666 9999999998889988877776
Q ss_pred eE
Q 003163 593 AC 594 (843)
Q Consensus 593 g~ 594 (843)
+.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 53
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.8e-10 Score=124.51 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=53.5
Q ss_pred hhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003163 516 STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 593 (843)
Q Consensus 516 stfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng 593 (843)
..|||+. +++..+.++...|.||+|||||+.||..... .+-.+|..-..| .++||||..|. ..|..++.+.+.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI----WLdNYLQgWkKT-LLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI----WLDNYLQGWKKT-LLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccceee----ehhhHHhhhhhe-eEEEecccchHHHHHHHHhhhhhh
Confidence 4577664 3455666778899999999999999973322 244566666677 89999998887 477777776554
Q ss_pred EE
Q 003163 594 CM 595 (843)
Q Consensus 594 ~v 595 (843)
.+
T Consensus 486 kL 487 (807)
T KOG0066|consen 486 KL 487 (807)
T ss_pred hh
Confidence 43
No 419
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.07 E-value=6e-10 Score=122.84 Aligned_cols=141 Identities=21% Similarity=0.225 Sum_probs=98.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh-------ccccc----------cccccccc---ccchHH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-------AKSGL----------HILSSEYA---KVPWFD 499 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~-------~q~G~----------~vpa~~~~---~i~~~~ 499 (843)
...+..|++|. ..|++++|+|++|+||||+|++|.+.... +.+|. .+|..... ...+.+
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 45789999999 88999999999999999999999654321 11121 12221111 223445
Q ss_pred HHHhhcCc---hhhH------------hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHH
Q 003163 500 SVFADIGD---EQSL------------SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 563 (843)
Q Consensus 500 ~i~~~ig~---~q~i------------~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L 563 (843)
+++...|+ .-.+ -..++.+|.+++.. ..+...+..|++++.||..+.||+.....++..+-+.-
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 55555555 1111 12234455555444 44445578999999999999999999999998888877
Q ss_pred HhcCCeEEEEEccchhHHh
Q 003163 564 AESGSLLTIATTHHGELKT 582 (843)
Q Consensus 564 ~~~g~t~vlitTHd~el~~ 582 (843)
++.|.| ++++||..++..
T Consensus 555 Re~giT-livvThrpEv~~ 572 (593)
T COG2401 555 REAGIT-LIVVTHRPEVGN 572 (593)
T ss_pred HHhCCe-EEEEecCHHHHh
Confidence 788998 999999999984
No 420
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=1.2e-09 Score=137.36 Aligned_cols=156 Identities=18% Similarity=0.202 Sum_probs=106.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc--ccccccc---cccc------------ch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--LHILSSE---YAKV------------PW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G--~~vpa~~---~~~i------------~~ 497 (843)
....++||+|. +.|+.++|+||-|||||+||.+|.|-..... .| .|+|... +..+ ..
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEER 612 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHH
Confidence 44589999999 9999999999999999999999843211110 11 1233200 0000 00
Q ss_pred HHHHHh---------hc--CchhhHhhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh
Q 003163 498 FDSVFA---------DI--GDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 498 ~~~i~~---------~i--g~~q~i~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~ 565 (843)
++++.. .+ ||.--+-..--++||++++ +..+.+...+.+++|||-|+|++|.+.+..+....+..+.
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L- 691 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL- 691 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-
Confidence 111111 11 2222222233357776655 5555566899999999999999999999999988885544
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 566 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 566 ~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
++.| +|+|||..++...||.+..+.||++...
T Consensus 692 ~~KT-~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 692 RGKT-VILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred cCCE-EEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 3566 9999999999999999999999999654
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.91 E-value=4.9e-09 Score=120.06 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=97.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------cccccccccccccch----------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------SGLHILSSEYAKVPW---------- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------~G~~vpa~~~~~i~~---------- 497 (843)
+..+..++++. +.|+-+.|+||||+|||.|||.+|++-...+ .-.|+|....-..+-
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 45566779999 8888999999999999999999986532111 113444322111110
Q ss_pred -------------HH---------HHHhhcCch--hhHhhhhhhhh-HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 498 -------------FD---------SVFADIGDE--QSLSQSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 498 -------------~~---------~i~~~ig~~--q~i~~~lstfS-~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
.. .+....|-- +........+| |+++|+..+.....+|.+-+|||-|+++|. +.
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~-dv 605 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTE-DV 605 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccH-HH
Confidence 00 112222221 24445556677 567777777777899999999999999997 33
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
. .++-+.+++.|.| .|-|+|-..+.++-+-...+.
T Consensus 606 E---~~~Yr~~r~~giT-~iSVgHRkSL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 606 E---GALYRKCREMGIT-FISVGHRKSLWKFHDYVLRMD 640 (659)
T ss_pred H---HHHHHHHHHcCCe-EEEeccHHHHHhhhhEEEEec
Confidence 3 2344556778998 899999999988766554443
No 422
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.7e-09 Score=114.82 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=99.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKVPW 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~i~~ 497 (843)
+.+++++++++. +.|+.++|+||.|+||||+++.+--+ +..++|. .+|. ...- +
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF-yD~~sG~I~id~qdir~vtq~slR~aIg~VPQ-DtvL--F 349 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQ-DTVL--F 349 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH-hCCcCceEEEcchhHHHhHHHHHHHHhCcCcc-ccee--h
Confidence 467889999999 88999999999999999999998211 1112221 2232 1000 0
Q ss_pred HHHHHhhc-------Cch------------h---hHhhhhh--------hhh-HHhHHHHHHHHhCCCCcEEEEecCCCC
Q 003163 498 FDSVFADI-------GDE------------Q---SLSQSLS--------TFS-GHLKQIGNIISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 498 ~~~i~~~i-------g~~------------q---~i~~~ls--------tfS-~~~~~l~~il~~a~~p~LLLLDEP~sG 546 (843)
-+.++..+ +.+ + .+-.++. .+| |+.+|++.+...+.+|++++|||.||+
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 01111100 000 0 0001111 134 455666666677899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
||...-.++ .+-++.+. .|.| .+++-|-+.-..-||.++.+.||.+...+
T Consensus 430 ldt~te~~i-q~~l~~~~-~~rt-tlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 430 LDTHTEQAI-QAALREVS-AGRT-TLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred hhhhHHHHH-HHHHHHHh-CCCe-EEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 999776666 44555544 5666 78899998888889999999999997554
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.85 E-value=1.8e-08 Score=104.98 Aligned_cols=71 Identities=23% Similarity=0.221 Sum_probs=45.0
Q ss_pred hhhHHhHHHHHHH-----HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 517 TFSGHLKQIGNII-----SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 517 tfS~~~~~l~~il-----~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
.+|++.+.+..+. ....+.+++|||||.++||+.....++ .++..+.. ..- +|+|||+..+...++...+|
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~-~~l~~~~~-~~Q-~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLA-DLLKELSK-QSQ-FIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHH-HHHHHHTT-TSE-EEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc-ccc-cccccccccccccccccccc
Confidence 5677665544332 235778899999999999997777665 45555443 344 89999999999888776655
No 424
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.84 E-value=8.3e-09 Score=133.19 Aligned_cols=76 Identities=24% Similarity=0.113 Sum_probs=59.6
Q ss_pred hhhhhhhH-HhHHHHHHHHhCC---CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 513 QSLSTFSG-HLKQIGNIISQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 513 ~~lstfS~-~~~~l~~il~~a~---~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
+...|+|| +.+|+..+..+.. .+.|++|||||+||++.+...+. .+++.|.+.|.| ||++.||.++...||.++
T Consensus 1695 q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~t-vivieH~~~~i~~aD~ii 1772 (1809)
T PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHS-VIYIDHDPALLKQADYLI 1772 (1809)
T ss_pred CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCe-EEEEeCCHHHHHhCCEEE
Confidence 34456675 4555555554433 36899999999999999999986 577889999998 999999999998888765
Q ss_pred ce
Q 003163 589 FF 590 (843)
Q Consensus 589 ~v 590 (843)
-+
T Consensus 1773 dl 1774 (1809)
T PRK00635 1773 EM 1774 (1809)
T ss_pred Ec
Confidence 44
No 425
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.81 E-value=1.5e-08 Score=114.74 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=87.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc---------ccccccccccccchH-HH--------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---------GLHILSSEYAKVPWF-DS-------- 500 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~---------G~~vpa~~~~~i~~~-~~-------- 500 (843)
.+.++...++|. ..|.-+.|+||||||||.|+|++|++-..-+. -.|+|....-..+-+ ++
T Consensus 493 ~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e 572 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSE 572 (728)
T ss_pred CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHH
Confidence 456778888888 77888999999999999999999876433221 223343221111100 11
Q ss_pred -HH-hhcCchh---------------------hHhhhhhhhhHH-hHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 501 -VF-ADIGDEQ---------------------SLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 501 -i~-~~ig~~q---------------------~i~~~lstfS~~-~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+. ..+++.+ .+..+-.-+||+ .+|+..+......|.+.+|||-|++..+.--.
T Consensus 573 ~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~--- 649 (728)
T KOG0064|consen 573 QMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG--- 649 (728)
T ss_pred HHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH---
Confidence 11 0111111 111111223444 45555555668999999999999999883322
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELKTLKY 585 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~~~a~ 585 (843)
.+.+...+.|.+ .|-+||-+.+-.|-.
T Consensus 650 -~i~~~ak~~gi~-llsithrpslwk~h~ 676 (728)
T KOG0064|consen 650 -KIFQAAKDAGIS-LLSITHRPSLWKYHT 676 (728)
T ss_pred -HHHHHHHhcCce-EEEeecCccHHHHHH
Confidence 344556778997 899999988876543
No 426
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=2.1e-08 Score=108.42 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=38.2
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh---ccccceeeeEE
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK---YSNDFFENACM 595 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a---~~~~~v~ng~v 595 (843)
..+|+++|||||+++|||.....+. +.+.+.+.+ +|++||...+..++ .++..+.+|.|
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~q~-ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEGRVQT-FVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCCCE-EEEeCCchhccchhccCccEEEEeCcEE
Confidence 4799999999999999996666553 333334443 45555555555666 44556666654
No 427
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.77 E-value=2.4e-08 Score=114.83 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=102.4
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc--------c------------cc-cccccccccc------c
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------K------------SG-LHILSSEYAK------V 495 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~--------q------------~G-~~vpa~~~~~------i 495 (843)
...+++|+ ..|+|++|.|==|+|+|=++++|.+..-.. + .| .|+|. +... .
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E-DRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE-DRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCc-ccccCcCcCCC
Confidence 46778888 889999999999999999999996532110 0 01 13332 1110 0
Q ss_pred chHHHH--------------------------HhhcCc-hhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCC
Q 003163 496 PWFDSV--------------------------FADIGD-EQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 496 ~~~~~i--------------------------~~~ig~-~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGl 547 (843)
++.+++ ...++. ..+..+..+++||+-+|...+ ..++.+|++|||||||.|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 111111 111111 123345567788765555444 4568899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEEE
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd-~el~~~a~~~~~v~ng~v~f 597 (843)
|.-....+ ..++..|...|.+ ||++|-+ .|+..+||++..|.+|.+.-
T Consensus 433 DVGAK~eI-y~li~~lA~~G~a-il~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 433 DVGAKAEI-YRLIRELAAEGKA-ILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred ccchHHHH-HHHHHHHHHCCCE-EEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99777776 5788889999998 6666665 67778999999999999864
No 428
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=1.4e-08 Score=128.14 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=109.0
Q ss_pred hhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhh------------ccccc--------cccccc
Q 003163 433 MQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM------------AKSGL--------HILSSE 491 (843)
Q Consensus 433 ~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~------------~q~G~--------~vpa~~ 491 (843)
-++.+.++...|++++++. .+|+-+||+|.-|||||||+.++-.+... .+.|+ .+|...
T Consensus 1144 ~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1144 LSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred eEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 3577777778999999999 88888999999999999999988332211 11121 233211
Q ss_pred -------ccccchHH-----HH---Hhhc-----------CchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCC
Q 003163 492 -------YAKVPWFD-----SV---FADI-----------GDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIG 544 (843)
Q Consensus 492 -------~~~i~~~~-----~i---~~~i-----------g~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~ 544 (843)
...+..|+ ++ +... |.+..+..+-+.||-+++|+..+. +++.++++|+|||.|
T Consensus 1224 vLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1224 VLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 11111111 11 1111 122233334457888888877665 558899999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003163 545 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 596 (843)
Q Consensus 545 sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~ 596 (843)
++.|+ +...+....++. .=.+|| ||.+-|...-..=+|++..+.+|.+.
T Consensus 1304 AsVD~-~TD~lIQ~tIR~-~F~dcT-VltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1304 ASVDP-ETDALIQKTIRE-EFKDCT-VLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred ccCCh-HHHHHHHHHHHH-HhcCCe-EEEEeeccchhhhcCeEEEeeCCeEe
Confidence 99999 666665554432 113677 99999998888888999999999985
No 429
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=100.81 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=46.0
Q ss_pred HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh
Q 003163 525 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 583 (843)
Q Consensus 525 l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~ 583 (843)
+..+.......-+.|||||-++|.|.-...+ .+++..+.+.|.- +|++||-+-+..+
T Consensus 137 ~~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~sGaQ-~IiATHSPiLlAi 193 (233)
T COG3910 137 LAIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLADSGAQ-IIIATHSPILLAI 193 (233)
T ss_pred HHHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHhcCCe-EEEEecChhheeC
Confidence 4444556788899999999999999666666 4788889999985 9999999877644
No 430
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.74 E-value=6.7e-08 Score=98.66 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=56.2
Q ss_pred HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003163 520 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 594 (843)
Q Consensus 520 ~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~ 594 (843)
|+-+++..+++.+..|.|||.||||+.++|.....+. .++..+.+...|+|++++||.... ..|+++..+.-|.
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 3445566666778999999999999999997777775 567777766444599999997655 6888876665544
No 431
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.73 E-value=3.4e-08 Score=116.91 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=58.1
Q ss_pred hhhhhhhH-HhHHHHHHHHh---CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 513 QSLSTFSG-HLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 513 ~~lstfS~-~~~~l~~il~~---a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
++..|+|| +.+|+..+..+ .+...|+||||||+||-+.+...|. .++..|.+.|.| ||++.|++++.+-||.++
T Consensus 818 QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnT-ViVIEHNLdVIk~AD~II 895 (935)
T COG0178 818 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNT-VIVIEHNLDVIKTADWII 895 (935)
T ss_pred CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecccceEeecCEEE
Confidence 34456775 45555555433 5677999999999999999999885 688889999998 999999999887766554
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.67 E-value=5.4e-08 Score=105.24 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=59.3
Q ss_pred eEEEEEccCCCCchhhhhcccchhhhcccccc-cccccccccchH---HHHHhhc-Cchh-hHhhhhhhhhHHhH-HHHH
Q 003163 455 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSEYAKVPWF---DSVFADI-GDEQ-SLSQSLSTFSGHLK-QIGN 527 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~-vpa~~~~~i~~~---~~i~~~i-g~~q-~i~~~lstfS~~~~-~l~~ 527 (843)
..++|+||||+|||||+++|++...... |.. +.. ..+... ..+...+ +..| .+....+-+.+-.+ .-..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~-G~i~~~g---~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI-SQLGLRG---KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC-ceEEECC---EEeecchhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 4589999999999999999965443221 211 111 111111 1111111 1111 00000111111000 0112
Q ss_pred HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh
Q 003163 528 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 584 (843)
Q Consensus 528 il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a 584 (843)
.+..+.+|+++|+|||++. ....++++.+. .|.+ +|+|||+..+...+
T Consensus 188 ~~i~~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~-vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGRE-------EDVEALLEALH-AGVS-IIATAHGRDVEDLY 235 (270)
T ss_pred HHHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCE-EEEEechhHHHHHH
Confidence 2233469999999999632 22345555554 5887 99999987775443
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.57 E-value=2.8e-07 Score=97.55 Aligned_cols=142 Identities=11% Similarity=0.178 Sum_probs=72.6
Q ss_pred cCCeEEEEEccCCCCchhh-hhcccchhhhcccccccccccccccchHHHHHhhcCc--hhhHhhh----h---hhhhHH
Q 003163 452 RKTRVLVITGPNTGGKTIC-LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD--EQSLSQS----L---STFSGH 521 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTL-LK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~--~q~i~~~----l---stfS~~ 521 (843)
+.|++++|+||||+||||| ++.+......+..+.|+.. +...-.+..+. ..+|. .+....+ + ..+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4678999999999999999 5666543333333444443 22211122221 22222 1111100 0 001111
Q ss_pred ---hHHHHHHHHh--CCCCcEEEEecCCCCC----ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-h-hhccccce
Q 003163 522 ---LKQIGNIISQ--STSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-T-LKYSNDFF 590 (843)
Q Consensus 522 ---~~~l~~il~~--a~~p~LLLLDEP~sGl----Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~-~a~~~~~v 590 (843)
...+..++.. ..+|+++++|||++++ |+.....+ ..++..+.+.|.+ +++| |+.... . .......+
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~g~t-vi~t-~~~~~~~~~~~~~~~~~ 176 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSLNKV-IILT-ANPKELDESVLTILRTA 176 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhCCCE-EEEE-ecccccccccceeEEEe
Confidence 1112222222 3579999999999999 76555555 4566777777775 5554 543321 1 11123445
Q ss_pred eeeEEEEe
Q 003163 591 ENACMEFD 598 (843)
Q Consensus 591 ~ng~v~fd 598 (843)
.+|.+...
T Consensus 177 ~DgvI~L~ 184 (230)
T PRK08533 177 ATMLIRLE 184 (230)
T ss_pred eeEEEEEE
Confidence 56666544
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.55 E-value=1.4e-07 Score=96.77 Aligned_cols=61 Identities=25% Similarity=0.265 Sum_probs=40.4
Q ss_pred hHHhHHHHHHHH---hCCCC-cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 519 SGHLKQIGNIIS---QSTSQ-SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 519 S~~~~~l~~il~---~a~~p-~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
|.+.+++..++. ..... .++|+|||-++|.|.....++ .++..+...+.- +|+|||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Q-viitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQ-VIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSE-EEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCE-EEEeCccchhc
Confidence 667776644332 23333 999999999999997766665 445544444665 99999997764
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.53 E-value=3.1e-07 Score=102.12 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=88.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc-------------cccccccc--------------hHHHHHhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-------------SSEYAKVP--------------WFDSVFAD 504 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp-------------a~~~~~i~--------------~~~~i~~~ 504 (843)
.+.++++.+|.||-|||||++++++..-... |.-+| ..+++.-. +..++..-
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd~-~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkp 443 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPDE-GGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKP 443 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCCc-cCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhh
Confidence 3567899999999999999999976322211 11111 10111000 11122333
Q ss_pred cCchhhHhhhhhhhhH-HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh
Q 003163 505 IGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 583 (843)
Q Consensus 505 ig~~q~i~~~lstfS~-~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~ 583 (843)
+..++-+++.+.++|| |+++++.++.+-.+.++.|+|||.+-+|...+...+..+-+.+...+.| -.+|.||.-.+.|
T Consensus 444 L~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt-afvVEhdfImaTY 522 (592)
T KOG0063|consen 444 LQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT-AFVVEHDFIMATY 522 (592)
T ss_pred hhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch-hhhhhhHHHHHHh
Confidence 4456677778888885 6777888888888889999999999999977666655555666666776 7999999888854
No 436
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=2.1e-07 Score=115.30 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=74.5
Q ss_pred HhhcCchh-hHhhhhhhhhHHhHHHHHHHH-hCCC--CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 502 FADIGDEQ-SLSQSLSTFSGHLKQIGNIIS-QSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 502 ~~~ig~~q-~i~~~lstfS~~~~~l~~il~-~a~~--p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+..+|... .+.+...++|+++++...++. ++.+ |.++||||||+||||.+...+. .++..|.+.|.| ||+|||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~T-VIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNT-VIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEECC
Confidence 34455543 256778899987776666554 4455 4899999999999998888875 677778888987 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003163 578 GELKTLKYSNDFF------ENACMEFD 598 (843)
Q Consensus 578 ~el~~~a~~~~~v------~ng~v~fd 598 (843)
+++...|+++..+ .+|.+.++
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeec
Confidence 9988899999988 88888765
No 437
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.47 E-value=2.9e-07 Score=114.35 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=75.5
Q ss_pred HhhcCchhh-HhhhhhhhhHHhHHHHHHHH-hCCCC--cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 502 FADIGDEQS-LSQSLSTFSGHLKQIGNIIS-QSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 502 ~~~ig~~q~-i~~~lstfS~~~~~l~~il~-~a~~p--~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+..+|.... +.....++|+++++...++. ++.+| .|+||||||+||||.+...+. .++..|.+.|.| ||++||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~T-VIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNT-LIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCC
Confidence 455666532 56778899988776666654 44554 899999999999998888875 677778888997 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003163 578 GELKTLKYSNDFF------ENACMEFD 598 (843)
Q Consensus 578 ~el~~~a~~~~~v------~ng~v~fd 598 (843)
.+....|+++..+ .+|.+.++
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeec
Confidence 9888889999888 88898765
No 438
>PRK13695 putative NTPase; Provisional
Probab=98.44 E-value=3.1e-07 Score=92.55 Aligned_cols=62 Identities=16% Similarity=0.166 Sum_probs=42.6
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
....+|+++|+|||+ .++..+ ..... .+..+.+.+.+ +|+|+|+.....+++++..+.++.+
T Consensus 92 ~~l~~~~~lllDE~~-~~e~~~-~~~~~-~l~~~~~~~~~-~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 92 RALEEADVIIIDEIG-KMELKS-PKFVK-AVEEVLDSEKP-VIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred hccCCCCEEEEECCC-cchhhh-HHHHH-HHHHHHhCCCe-EEEEECchhhHHHHHHHhccCCcEE
Confidence 345799999999974 244322 22333 33444467887 9999999777778888888777766
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.32 E-value=1.1e-06 Score=88.66 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=36.5
Q ss_pred CCCCcEEEEecCCCCCC---hhhHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 532 STSQSLVLLDEIGAGTN---PLEGTALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlD---p~e~~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
..+|+++++|||++.+| +..... ...++..+...|++ +|+|+|+...
T Consensus 93 ~~~~~~lviD~~~~~~~~~~~~~~~~-i~~l~~~l~~~g~t-vi~v~~~~~~ 142 (187)
T cd01124 93 EFKAKRVVIDSVSGLLLMEQSTARLE-IRRLLFALKRFGVT-TLLTSEQSGL 142 (187)
T ss_pred HhCCCEEEEeCcHHHhhcChHHHHHH-HHHHHHHHHHCCCE-EEEEeccccC
Confidence 46899999999999998 533333 35677778888887 9999998654
No 440
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.30 E-value=2.3e-06 Score=98.49 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=88.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc-cccccccchHHHHH-hhcCchhhHhhhh--
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSEYAKVPWFDSVF-ADIGDEQSLSQSL-- 515 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp-a~~~~~i~~~~~i~-~~ig~~q~i~~~l-- 515 (843)
+..+.+++ +. ..|+.++|+||||+|||||+++|++..-. ..|.+.- ...+..+. .++ ..++.. .+....
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~---e~~~~~l~~~-~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVR---EFIERDLGPE-GLKRSIVV 218 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHH---HHHHhhcChh-hhcCeEEE
Confidence 44567777 77 78889999999999999999998654322 1222111 10111111 111 111110 011100
Q ss_pred ---hhhhHHhH--------HHHHHHHhCCCCcEEEEe-----------------cC--CCCCChhhHHHHHHHHHHHHHh
Q 003163 516 ---STFSGHLK--------QIGNIISQSTSQSLVLLD-----------------EI--GAGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 516 ---stfS~~~~--------~l~~il~~a~~p~LLLLD-----------------EP--~sGlDp~e~~al~~~lle~L~~ 565 (843)
+.-+..++ .++.-.+.....=||++| || ++|+||.....+ ..+++.+..
T Consensus 219 v~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~ 297 (438)
T PRK07721 219 VATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGT 297 (438)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcC
Confidence 00011111 122222223455577788 75 689999555555 577777763
Q ss_pred --cCC-----eEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003163 566 --SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 566 --~g~-----t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
.|. | |++.+||++. .+|++...+.+|++.++..
T Consensus 298 ~~~GsIT~~~T-Vlv~~hdm~e-~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 298 NASGSITAFYT-VLVDGDDMNE-PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCCCeeeEEE-EEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence 464 6 8999999884 7899999999999998864
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.30 E-value=2.6e-06 Score=82.77 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=63.3
Q ss_pred EEEEEccCCCCchhhhhcccchhhh-cccccccccccccccchHHHH--HhhcCchhhHhh--hhhhh--hHHhHHHHHH
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ--SLSTF--SGHLKQIGNI 528 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~~vpa~~~~~i~~~~~i--~~~ig~~q~i~~--~lstf--S~~~~~l~~i 528 (843)
+++|+||||+||||+++.++..... .....++.. +.......... +...+..+.... ..... .....+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI-EEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC-CcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3689999999999999998543321 111122222 11111111110 111111111000 00000 1122233444
Q ss_pred HHhCCCCcEEEEecCCCCCChh---------hHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 529 ISQSTSQSLVLLDEIGAGTNPL---------EGTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlDp~---------e~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
.....++.++++|||++-+++. ........+...+.+.+++ +|+|+|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVT-VIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCce-EEEEEecCC
Confidence 5556899999999999543321 2334445677777777887 999999764
No 442
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.28 E-value=3.3e-06 Score=89.20 Aligned_cols=143 Identities=10% Similarity=0.102 Sum_probs=73.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh-hhcccccccccccccccchHHHHHhhcC--chhhHhhh-----------hhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHILSSEYAKVPWFDSVFADIG--DEQSLSQS-----------LST 517 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~~vpa~~~~~i~~~~~i~~~ig--~~q~i~~~-----------lst 517 (843)
+.|.++.|+||+|+|||||...++.-. ..+..+.|+.. +...-.+..+ +..+| ..+.+..+ ...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 568899999999999999999874221 12233444443 2221112111 12222 11111110 011
Q ss_pred hhHHhHHHHHH-HHhC--CCCcEEEEecCCCCCChhhHH---HHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003163 518 FSGHLKQIGNI-ISQS--TSQSLVLLDEIGAGTNPLEGT---ALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFF 590 (843)
Q Consensus 518 fS~~~~~l~~i-l~~a--~~p~LLLLDEP~sGlDp~e~~---al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v 590 (843)
.+..+.++... ...+ .+|+++++|||++.+|..... .+.. .+..+.+.+++ +++++|..... ........+
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~t-vllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKT-ILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCCcCCHHHHHHHHhh
Confidence 12222333222 2222 489999999999655433322 3222 24445667887 89999975442 233334455
Q ss_pred eeeEEEEe
Q 003163 591 ENACMEFD 598 (843)
Q Consensus 591 ~ng~v~fd 598 (843)
.+|.+.+.
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 56665554
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.13 E-value=1.5e-05 Score=74.23 Aligned_cols=117 Identities=20% Similarity=0.181 Sum_probs=55.9
Q ss_pred CeEEEEEccCCCCchhhhhcccchhhhcc-cccccccccccccchHHHHHhhcCchhhHhhhhhhhhHH-hHHHHHHHHh
Q 003163 454 TRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQ 531 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igli~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~-~~~l~~il~~ 531 (843)
+..++|+||+|+||||+++.++....... ...++.+ ............ .............. ..+.....+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG-EDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECC-EEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999854333221 1112222 111111100000 00000011111111 1111111122
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHH-----HHHHHHHhcCCeEEEEEccc
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGM-----SLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~-----~lle~L~~~g~t~vlitTHd 577 (843)
...+.++++||+..-.+......... .........+.. +|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT-VILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCE-EEEEeCC
Confidence 23479999999999988855443321 112223334554 7888884
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.11 E-value=6.4e-06 Score=91.97 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=53.9
Q ss_pred hhhhhh-HHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 514 SLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 514 ~lstfS-~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
....+| |+.++.+.++..+...++.++|||.+.||...+...+. .+..|..-... ||+|.||+.+..|-..
T Consensus 210 e~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~Y-iIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 210 EVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRY-IIVVEHDLSVLDYLSD 281 (592)
T ss_pred hhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCe-EEEEEeechHHHhhhc
Confidence 334445 45677777777789999999999999999988887764 45566666665 9999999988875433
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=6.9e-06 Score=84.90 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
..+|+++++||| .|+... ..+++ ....|.. ++.|+|..+.....++..
T Consensus 72 r~~pd~ii~gEi---rd~e~~----~~~l~-~a~~G~~-v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 72 RQDPDVILVGEM---RDLETI----RLALT-AAETGHL-VMSTLHTNSAAKTIDRII 119 (198)
T ss_pred cCCcCEEEEcCC---CCHHHH----HHHHH-HHHcCCE-EEEEecCCcHHHHHhHHH
Confidence 458999999999 576332 23343 3456886 999999877655444443
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.02 E-value=3.9e-06 Score=92.65 Aligned_cols=128 Identities=15% Similarity=0.162 Sum_probs=64.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHH-HHHhhcCchhhHhhhhhhhhHHhHHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD-SVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 530 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~-~i~~~ig~~q~i~~~lstfS~~~~~l~~il~ 530 (843)
..+..++|+||||||||||++++..... ...+...- .+...+.... +... +.. +........+ .+..+.. ..
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~i-ed~~El~~~~~~~~~-l~~-~~~~~~~~~~--~~~~~l~-~~ 214 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITI-EDTREIFLPHPNYVH-LFY-SKGGQGLAKV--TPKDLLQ-SC 214 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEE-cCccccCCCCCCEEE-EEe-cCCCCCcCcc--CHHHHHH-HH
Confidence 3567799999999999999998843211 11111000 0101111000 0000 000 0000000001 1111111 12
Q ss_pred hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 531 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 531 ~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
+..+|+++++|||.+ . + . ..+++.+. .|...++.|+|........++...+..+.+
T Consensus 215 Lr~~pd~ii~gE~r~---~-e---~-~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~ 270 (308)
T TIGR02788 215 LRMRPDRIILGELRG---D-E---A-FDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQ 270 (308)
T ss_pred hcCCCCeEEEeccCC---H-H---H-HHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhccc
Confidence 357999999999964 2 2 2 34566555 454326999999887777776666655544
No 447
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.01 E-value=2.7e-05 Score=92.84 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=78.5
Q ss_pred hhhHHhHHH-HHHHHhCC----CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 517 TFSGHLKQI-GNIISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 517 tfS~~~~~l-~~il~~a~----~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
.+|+++++. ..+++.+. +|+++|||||++|+|+.....+. .++..+.. +.+ ||++||++.+..+|+++..+.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~-~~l~~l~~-~~~-vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA-KKLAQLSE-RHQ-VLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCE-EEEEEChHHHHHhcCeEEEEE
Confidence 566665544 44444443 46999999999999997777775 56666664 676 999999999998999888887
Q ss_pred eeEEEEecccceeeEEEecCCCCCChHHHHHHHcC---CCHHHHHHHHHHH
Q 003163 592 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 639 (843)
Q Consensus 592 ng~v~fd~~~l~ptY~l~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~~ 639 (843)
++.. +.. |+.-.....+..--.+||+.+| ..+.-+..|+.++
T Consensus 517 k~~~--~~~----t~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGR----TATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCc----EEEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6542 221 2222222455666778999994 3566677777765
No 448
>PRK10869 recombination and repair protein; Provisional
Probab=97.96 E-value=3.9e-05 Score=91.21 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=78.0
Q ss_pred hhhHHh-HHHHHHHHhC----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 517 TFSGHL-KQIGNIISQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 517 tfS~~~-~~l~~il~~a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
.+|+++ +++..++..+ .+|+++|||||++|+|+.....+. .++..+.+ +.+ ||++||++.++.+|+++..|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~-~~q-vi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVG-KLLRQLGE-STQ-VMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHhCCEEEEEe
Confidence 456555 4444444444 368999999999999997777765 56666654 566 999999999999999888876
Q ss_pred eeEEEEecccceeeEEEecCCCCCChHHHHHHHcC---CCHHHHHHHHHHH
Q 003163 592 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 639 (843)
Q Consensus 592 ng~v~fd~~~l~ptY~l~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~~ 639 (843)
.+.. +. .||.-..-..+..--.+||+.+| ..+.-+..|+.++
T Consensus 507 k~~~--~~----~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 507 KETD--GG----MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cccc--CC----eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5431 11 23322223455666778999993 3566677777765
No 449
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=1.3e-05 Score=101.99 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=56.0
Q ss_pred hhhhhhhHHhHHHHHHH-HhCC----------CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 513 QSLSTFSGHLKQIGNII-SQST----------SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il-~~a~----------~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
..+.++||+++.+..+. +++. +|++|||||||+|+|+.....+ ..++..+...|.+ |+||||+++++
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~~g~~-i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIREGSKM-IGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHhCCCE-EEEEeCcHHHH
Confidence 45678899887665443 3321 6999999999999999666655 5677778777886 99999999998
Q ss_pred h-hhccccce
Q 003163 582 T-LKYSNDFF 590 (843)
Q Consensus 582 ~-~a~~~~~v 590 (843)
. +++++..+
T Consensus 1024 ~~~~~~i~v~ 1033 (1042)
T TIGR00618 1024 ERIPHRILVK 1033 (1042)
T ss_pred HhhCCEEEEE
Confidence 5 55544443
No 450
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.87 E-value=2.4e-05 Score=97.75 Aligned_cols=157 Identities=15% Similarity=0.159 Sum_probs=97.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-----------h----------------hccccccccc---c
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-----------M----------------MAKSGLHILS---S 490 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-----------~----------------~~q~G~~vpa---~ 490 (843)
..++++++.- +.|+++.+.||.|||||||||.+++.. + .+|...++|. .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3578888866 889999999999999999999996432 1 0111111110 0
Q ss_pred -----------cccccc----------hHHHHHhhcCchhhHhh-----hhhhhhHHhHHHHHH-HHhCCCCcEEEEecC
Q 003163 491 -----------EYAKVP----------WFDSVFADIGDEQSLSQ-----SLSTFSGHLKQIGNI-ISQSTSQSLVLLDEI 543 (843)
Q Consensus 491 -----------~~~~i~----------~~~~i~~~ig~~q~i~~-----~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP 543 (843)
...++. ..+.++..+|.....+. ..+..||+.++...+ -..+.+++++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 000000 11122333333222111 112344444443333 345789999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEec
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~--el~~~a~~~~~v~ng~v~fd~ 599 (843)
|+|||....-.++..+...-.-.+.| ++++-|.. +...+-|.+..+.+|.+.|.+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t-~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGAT-ALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcce-EEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 99999988888876555544445666 77777763 555788999999999998865
No 451
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.83 E-value=6.3e-05 Score=85.91 Aligned_cols=166 Identities=11% Similarity=0.100 Sum_probs=108.1
Q ss_pred CCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------------cc-
Q 003163 428 LSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SG- 484 (843)
Q Consensus 428 ~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------------~G- 484 (843)
+.+...+++.-.+ .....+++|+ ..|+|++|.|-.|-|-+.|+..|+++..... .|
T Consensus 258 L~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 258 LEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 3555566664332 3567889999 8999999999999999999999976642211 01
Q ss_pred cccccccc-----cccchHHH----------------------------HHhhcCch-hhHhhhhhhhhHH-hHHHHHHH
Q 003163 485 LHILSSEY-----AKVPWFDS----------------------------VFADIGDE-QSLSQSLSTFSGH-LKQIGNII 529 (843)
Q Consensus 485 ~~vpa~~~-----~~i~~~~~----------------------------i~~~ig~~-q~i~~~lstfS~~-~~~l~~il 529 (843)
.|+|.... ..++..++ +...+++. .+......++||+ ++++....
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaR 416 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR 416 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhh
Confidence 13342110 01111111 11122221 1222233456664 45555555
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEE
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 596 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~-el~~~a~~~~~v~ng~v~ 596 (843)
.+..+|+||+...||.|+|.-....+-..++ ..++.|+. |+++|-|+ ++..+||++..+.+|.+.
T Consensus 417 El~~~p~lLI~~qPTrGLDvgA~~~I~~~l~-e~r~~G~A-VLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 417 ELARRPDLLIAAQPTRGLDVGAIEFIHERLL-ELRDAGKA-VLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hhccCCCEEEEcCCCccccHHHHHHHHHHHH-HHHhcCCE-EEEEehhHHHHHHhhheeeeeeCCcee
Confidence 6789999999999999999966666554444 56888987 88888886 555899999999999885
No 452
>PRK03918 chromosome segregation protein; Provisional
Probab=97.82 E-value=4.9e-05 Score=95.13 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=56.4
Q ss_pred hhhhhhHHhHHHHHH-------HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 514 SLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 514 ~lstfS~~~~~l~~i-------l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
...++|+++++...+ ..++.+|+++||||||+|+|+.....+.. ++..+...+.+ ||++||+.++..+|++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~-~l~~~~~~~~~-iiiith~~~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVD-IMERYLRKIPQ-VIIVSHDEELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHH-HHHHHHhcCCE-EEEEECCHHHHHhCCe
Confidence 445778887664322 13467899999999999999977777654 44555555666 9999999998888887
Q ss_pred cccee
Q 003163 587 NDFFE 591 (843)
Q Consensus 587 ~~~v~ 591 (843)
++.|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 76664
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=97.75 E-value=6e-05 Score=94.69 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=57.1
Q ss_pred hhhhhhHHhHHHHHH-------HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC-CeEEEEEccchhHHhhhc
Q 003163 514 SLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKTLKY 585 (843)
Q Consensus 514 ~lstfS~~~~~l~~i-------l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g-~t~vlitTHd~el~~~a~ 585 (843)
.+..+|++++....+ ..++.+|++++|||||+|+|+.....+...+...+...+ .+++|++||++++..+|+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 456788887665443 234678999999999999999777776544433444443 223999999999999888
Q ss_pred ccccee
Q 003163 586 SNDFFE 591 (843)
Q Consensus 586 ~~~~v~ 591 (843)
++..|.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 887765
No 454
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.69 E-value=5.1e-05 Score=90.14 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=55.9
Q ss_pred hhhhhhHHhHHHHHHH-HhC----------CCCcEEEEecCC-CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 514 SLSTFSGHLKQIGNII-SQS----------TSQSLVLLDEIG-AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 514 ~lstfS~~~~~l~~il-~~a----------~~p~LLLLDEP~-sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
.+.++|+++++...++ +++ .+|+++|||||| +|+|+.....+. .++..+ .|.+ ||++||+.++.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~-~~l~~~--~~~~-iiiish~~~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALL-SILDSL--KDTN-VFVISHKDHDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHH-HHHHhC--CCCe-EEEEECchhch
Confidence 4567888777655554 222 489999999998 789997766665 455555 4666 99999998888
Q ss_pred hhhccccceee
Q 003163 582 TLKYSNDFFEN 592 (843)
Q Consensus 582 ~~a~~~~~v~n 592 (843)
..++++..+.+
T Consensus 541 ~~~d~~~~l~~ 551 (562)
T PHA02562 541 QKFDRHLKMEK 551 (562)
T ss_pred hhhhcEEEEEE
Confidence 88888877765
No 455
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.68 E-value=2.5e-05 Score=65.82 Aligned_cols=30 Identities=33% Similarity=0.468 Sum_probs=25.7
Q ss_pred eeEEEecCCeEEEEEccCCCCchhhhhccc
Q 003163 446 IDIFIARKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 446 ~disL~~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.++..|.+++|+||||+||||+|..|.
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHH
Confidence 456777667789999999999999999984
No 456
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.68 E-value=3.2e-05 Score=72.32 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=30.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..++.+++|. .++++++|+||+|||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4578889998 788999999999999999999974
No 457
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.62 E-value=8.3e-05 Score=83.41 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=56.3
Q ss_pred CCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhC
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 532 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a 532 (843)
.+.+++|+||+||||||+|+.+.........+..+.......+.. ......+... .+.....+|... +..+ +.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~~i~q~-evg~~~~~~~~~---l~~~--lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRSLINQR-EVGLDTLSFANA---LRAA--LR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccceEEcc-ccCCCCcCHHHH---HHHh--hc
Confidence 356789999999999999998743211111121111101111100 0000000000 000000112111 1222 34
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh
Q 003163 533 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 583 (843)
Q Consensus 533 ~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~ 583 (843)
.+|+++++||+ .|+..... .++ ....|.. ++.|+|-......
T Consensus 194 ~~pd~i~vgEi---rd~~~~~~----~l~-aa~tGh~-v~~T~Ha~~~~~~ 235 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETVEL----ALT-AAETGHL-VFGTLHTNSAAQT 235 (343)
T ss_pred cCCCEEEEeCC---CCHHHHHH----HHH-HHHcCCc-EEEEEcCCCHHHH
Confidence 69999999999 58744332 233 3556886 8999997555443
No 458
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.55 E-value=0.00019 Score=67.52 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..+.|+||.|+||||+++.++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~ 41 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIAN 41 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999853
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.55 E-value=0.00013 Score=92.86 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=53.5
Q ss_pred hhhhhhhHHhHHHHHHHH-hC--------CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003163 513 QSLSTFSGHLKQIGNIIS-QS--------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 582 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~-~a--------~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~ 582 (843)
....++||+++.+..+.. ++ .+|+++||||||+|+|+.....+ ..++..+...|.+ |+++||..++..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~-~~~l~~l~~~g~~-v~iisH~~~l~~ 1021 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTA-LDALDALNASGKT-IGVISHVEAMKE 1021 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHH-HHHHHHHHHCCCE-EEEEecHHHHHH
Confidence 456789988877665543 33 27999999999999999666665 5678888888887 999999888874
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.55 E-value=9.7e-05 Score=84.79 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=72.9
Q ss_pred Ee-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccc-cccccccc-hHHHHHhhcCchhh-HhhhhhhhhHHhHHH
Q 003163 450 IA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSEYAKVP-WFDSVFADIGDEQS-LSQSLSTFSGHLKQI 525 (843)
Q Consensus 450 L~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp-a~~~~~i~-~~~~i~~~ig~~q~-i~~~lstfS~~~~~l 525 (843)
+. ..|+.++|+||||+|||||+++|++.... ..|.+.- ......+. ++...+..-+...+ +....+..+..++..
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 55 67788999999999999999998654321 1121111 10112221 11222221121111 111223334444433
Q ss_pred HHHHH--------hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 526 GNIIS--------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 526 ~~il~--------~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
....+ ....+-||++|+||++.|+. ..+. ..+...-..|-+ ..+.||...+.+-+.. ...|++
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~-~~~~s~l~~L~ERag~---~~~GSi 300 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKT-LLMESYMKKLLERSGK---TQKGSI 300 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCee-eeeeccchhHHHHhcc---CCCcce
Confidence 32222 23688999999999999984 3332 233334434665 6777886666654433 345665
No 461
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.55 E-value=0.00028 Score=74.96 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCCcEEEEecCCCC------CChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 532 STSQSLVLLDEIGAG------TNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 532 a~~p~LLLLDEP~sG------lDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
..+|++|++| |.++ .|+.....+...+.....+.|++ ||+++|..
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~a-vl~v~H~~ 159 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAA-ILLVHHVR 159 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCE-EEEEeccC
Confidence 4789999999 7654 68866666655444433456887 99999975
No 462
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.54 E-value=0.00026 Score=92.32 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=51.2
Q ss_pred hhhhHHhHH-------HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH----hcCCeEEEEEccchhHHh-h
Q 003163 516 STFSGHLKQ-------IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELKT-L 583 (843)
Q Consensus 516 stfS~~~~~-------l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~----~~g~t~vlitTHd~el~~-~ 583 (843)
+.+|+++++ +..+.+++.+|.+|||||||+|+|+.....+...+...+. ..|.+ ||++||+.++.. +
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~-viiitHd~~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQ-LLVITHDEDFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCe-EEEEecCHHHHHHH
Confidence 578888876 4444566889999999999999999887777655554432 23676 999999998874 4
Q ss_pred h
Q 003163 584 K 584 (843)
Q Consensus 584 a 584 (843)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 463
>PRK04296 thymidine kinase; Provisional
Probab=97.54 E-value=0.00037 Score=71.70 Aligned_cols=142 Identities=16% Similarity=0.147 Sum_probs=75.5
Q ss_pred CeEEEEEccCCCCchhhhhcccchhhhccccc---cc-ccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 454 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HI-LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---~v-pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
|.+++|+||.|+||||++..+..-. ...|. ++ |. -..+.. ...+...+|..-.. ............+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k~~-~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~-- 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFKPA-IDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE-- 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEecc-cccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh--
Confidence 5789999999999999887653211 11121 11 11 000111 11233333321000 000010111111111
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc-----------hhHHhhhccccceeeeEEEEe
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-----------GELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd-----------~el~~~a~~~~~v~ng~v~fd 598 (843)
...+.++|++||.-- ++.. .+ ..+++.+...|.+ |+++.++ ..+..+||.+..+..-++. .
T Consensus 75 -~~~~~dvviIDEaq~-l~~~---~v-~~l~~~l~~~g~~-vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~-C 146 (190)
T PRK04296 75 -EGEKIDCVLIDEAQF-LDKE---QV-VQLAEVLDDLGIP-VICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVH-C 146 (190)
T ss_pred -hCCCCCEEEEEcccc-CCHH---HH-HHHHHHHHHcCCe-EEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccc-c
Confidence 235779999999832 3331 12 3567777888997 9999998 3555678877777665543 3
Q ss_pred cccceeeEEEec
Q 003163 599 EVKLKPTYKILW 610 (843)
Q Consensus 599 ~~~l~ptY~l~~ 610 (843)
...-..++|+..
T Consensus 147 g~~a~~~~r~~~ 158 (190)
T PRK04296 147 GRKATMNQRLID 158 (190)
T ss_pred CCccceEEEEeC
Confidence 444556777764
No 464
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.51 E-value=0.00042 Score=86.21 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=38.8
Q ss_pred CCCCcEEEEecCCCCC-ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 532 STSQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 532 a~~p~LLLLDEP~sGl-Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
...|.++++|||..++ ||... ..+..+++.+++.|++ ++++||+.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~-~~i~~~lk~~RK~~~~-vil~Tq~~~d~ 698 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFR-DKIREWLKVLRKANCA-VVLATQSISDA 698 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHH-HHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 5789999999999999 57444 4456777778888887 99999997665
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.50 E-value=0.0001 Score=75.38 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..++.++|+||||||||||+++|.+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35678999999999999999998543
No 466
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.50 E-value=0.00013 Score=93.43 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=56.7
Q ss_pred hhhhhhhHHhHHHHHHHHh-----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 513 QSLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~~-----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
..+..+|++++++..+... +.+|+++|||||++|+|+.....+. .++..+.. +.+ +|+|||++.+..+|+++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~~~~~~~-~~~-~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFA-NLLKEFSK-NTQ-FIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHH-HHHHHhcc-CCE-EEEEEcChhHHHHhhhH
Confidence 3445678877766555432 4678999999999999997777765 55555654 455 89999999998888887
Q ss_pred ccee
Q 003163 588 DFFE 591 (843)
Q Consensus 588 ~~v~ 591 (843)
.+|.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 6653
No 467
>PRK09183 transposase/IS protein; Provisional
Probab=97.49 E-value=0.00032 Score=75.72 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=57.6
Q ss_pred EEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHH
Q 003163 448 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 527 (843)
Q Consensus 448 isL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~ 527 (843)
+++-..++.++|+||+|+|||+|..+||..... .|..+-. +. ...++..+.... ..+ .+..
T Consensus 96 ~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~-----~~-~~~l~~~l~~a~--------~~~---~~~~ 156 (259)
T PRK09183 96 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRF-----TT-AADLLLQLSTAQ--------RQG---RYKT 156 (259)
T ss_pred CCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEE-----Ee-HHHHHHHHHHHH--------HCC---cHHH
Confidence 333445677899999999999999999643322 2311100 00 011111110000 000 1112
Q ss_pred HH-HhCCCCcEEEEecCCCC-CChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 528 II-SQSTSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 528 il-~~a~~p~LLLLDEP~sG-lDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
++ .....++++++||.+.. .+. +...+...++....+.+ + +|+||+.
T Consensus 157 ~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~-s-~iiTsn~ 205 (259)
T PRK09183 157 TLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKG-S-MILTSNL 205 (259)
T ss_pred HHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcC-c-EEEecCC
Confidence 22 22467899999999754 554 44434445666555554 4 6888876
No 468
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.48 E-value=0.00019 Score=74.61 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHHhCCCCcEEEEecCC-----CCCChhhHHHHHHHHHHHHHh
Q 003163 528 IISQSTSQSLVLLDEIG-----AGTNPLEGTALGMSLLEAFAE 565 (843)
Q Consensus 528 il~~a~~p~LLLLDEP~-----sGlDp~e~~al~~~lle~L~~ 565 (843)
+..++.+|+++++|||| +|+||.....+. .++..++.
T Consensus 164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~~ 205 (215)
T PTZ00132 164 ARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAAN 205 (215)
T ss_pred HHHHhhcccceecCCcccCCCccccCHHHHHHHH-HHHHHHhh
Confidence 33457899999999999 999997776664 55555543
No 469
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.47 E-value=0.00042 Score=80.06 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCC-------eEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003163 544 GAGTNPLEGTALGMSLLEAFAESGS-------LLTIATTHHGELKTLKYSNDFFENACMEFDEV 600 (843)
Q Consensus 544 ~sGlDp~e~~al~~~lle~L~~~g~-------t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~ 600 (843)
..|.||.-...+ ..+++.....+. + |++.+||+. ...++....+.+|++.++..
T Consensus 282 ~~Gypp~~~~~l-~~l~ERag~~~~GSIT~i~t-Vl~~~~d~~-dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 282 TKGYTPSVFSTL-PRLLERAGASGKGSITAFYT-VLVEGDDMN-EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred ccccChhHHHHH-HHHHHHhccCCCCeeeEEEE-EEccCcCCC-cchhhhhccccceEEEEecc
Confidence 348999544444 567777765555 5 788889873 34778888999999998863
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.45 E-value=0.0009 Score=70.30 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=37.9
Q ss_pred CCcEEEEecCCCCC--ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH--hhhccccceeeeEEEEe
Q 003163 534 SQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK--TLKYSNDFFENACMEFD 598 (843)
Q Consensus 534 ~p~LLLLDEP~sGl--Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~--~~a~~~~~v~ng~v~fd 598 (843)
.++++++|-|+.-+ +|.....+...+...+.+.|+| +|+|+|..... .+......+.++-+.+.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~t-vil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFT-ILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCE-EEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 46777777775432 3433344555666677788997 99999964322 12122344566666554
No 471
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.44 E-value=0.0008 Score=81.77 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred eEEEe--cCCeEEEEEccCCCCchhhhhcccc
Q 003163 447 DIFIA--RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 447 disL~--~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|. .+..+++|.||||+||||+|++|..
T Consensus 19 ~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~ 50 (650)
T TIGR03185 19 TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQL 50 (650)
T ss_pred eeeeecCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444 3345899999999999999999854
No 472
>PRK06893 DNA replication initiation factor; Validated
Probab=97.44 E-value=0.00092 Score=70.75 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred eEEEEEccCCCCchhhhhcccchhhhcc-cccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCC
Q 003163 455 RVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 533 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~ 533 (843)
..+.|.||.|+|||+|+..++.-..... ...|++. . . . ..+.. .++....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~--------~-~-~-------------~~~~~------~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL--------S-K-S-------------QYFSP------AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH--------H-H-h-------------hhhhH------HHHhhcc
Confidence 4578999999999999999964322110 1112221 0 0 0 00000 1222345
Q ss_pred CCcEEEEecCCCCC-ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccceeeEEEecCC
Q 003163 534 SQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGV 612 (843)
Q Consensus 534 ~p~LLLLDEP~sGl-Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~~~l~ptY~l~~G~ 612 (843)
+.++|+|||+.... |+.....+ ..+++.+.+.|.+ +|++|++.....+......+... +.+ -+.|+ ...
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~-illits~~~p~~l~~~~~~L~sR-l~~-----g~~~~--l~~ 160 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKT-LLLISADCSPHALSIKLPDLASR-LTW-----GEIYQ--LND 160 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCc-EEEEeCCCChHHccccchhHHHH-Hhc-----CCeee--CCC
Confidence 78999999998754 33223334 4567777777775 66666654333222111111110 000 01111 122
Q ss_pred CCCChHHHH----HHH--cCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003163 613 PGRSSAINI----AER--LGLPGIVVQNARQLYGAASAEINEVIIEME 654 (843)
Q Consensus 613 ~g~S~a~~i----A~~--~gl~~~ii~~A~~~~~~~~~~~e~~i~~Le 654 (843)
|....-..+ +.. +.+++++++.--.....+...+...++.|.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 322222222 222 235777776655556666666666666653
No 473
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.37 E-value=0.00027 Score=91.16 Aligned_cols=113 Identities=16% Similarity=0.102 Sum_probs=57.1
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHH--HhcCCeEEEEEccchhHHhhh--ccccceeeeEEEEeccccee--e
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAF--AESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDEVKLKP--T 605 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L--~~~g~t~vlitTHd~el~~~a--~~~~~v~ng~v~fd~~~l~p--t 605 (843)
...+-||+||+. -|. +. ...+.... ...|.+ ||+|||+..+.... +++..+. .+. +.+.+.- .
T Consensus 294 ~~krvLLVLDdv---~~~-~~---l~~L~~~~~~~~~Gsr-IIiTTrd~~vl~~~~~~~~~~v~--~l~-~~ea~~LF~~ 362 (1153)
T PLN03210 294 KHRKVLIFIDDL---DDQ-DV---LDALAGQTQWFGSGSR-IIVITKDKHFLRAHGIDHIYEVC--LPS-NELALEMFCR 362 (1153)
T ss_pred hCCeEEEEEeCC---CCH-HH---HHHHHhhCccCCCCcE-EEEEeCcHHHHHhcCCCeEEEec--CCC-HHHHHHHHHH
Confidence 456779999995 222 21 12222211 124665 99999998887432 2211110 000 0011100 0
Q ss_pred EEEecCCCCC---ChHHHHHHHc-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003163 606 YKILWGVPGR---SSAINIAERL-GLPGIVVQNARQLYGAASAEINEVIIEMER 655 (843)
Q Consensus 606 Y~l~~G~~g~---S~a~~iA~~~-gl~~~ii~~A~~~~~~~~~~~e~~i~~Le~ 655 (843)
|-.....|.. ..+..|++.. |+|-.+.--+..+.++...+++..+.+|+.
T Consensus 363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRN 416 (1153)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 0001111211 1144466655 789888777777666677778887777654
No 474
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.29 E-value=0.00096 Score=76.38 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+-+.|.||+|+|||++.+.++.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999854
No 475
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00043 Score=79.38 Aligned_cols=91 Identities=12% Similarity=0.242 Sum_probs=52.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc---ccccccccccccccchHHHHH---hhcCchhhHhhhhhhhhHHhHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQI 525 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~---q~G~~vpa~~~~~i~~~~~i~---~~ig~~q~i~~~lstfS~~~~~l 525 (843)
..|++++++||||+||||+++.|++...+. ..+..+.. ...+++.++++. ..+|.... ... ....+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp~~------~v~-~~~dl 260 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVSVR------SIK-DIADL 260 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCcee------cCC-CHHHH
Confidence 467899999999999999999887643221 12223333 445566665532 12222110 000 11112
Q ss_pred HHHHHhCCCCcEEEEecCCCCCChhhH
Q 003163 526 GNIISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 526 ~~il~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
...+..+.+.+++|+|.+ |..+.+.
T Consensus 261 ~~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 261 QLMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHHhcCCCEEEecCC--CCCcchH
Confidence 333445678899999975 7776543
No 476
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.28 E-value=0.0017 Score=75.44 Aligned_cols=167 Identities=16% Similarity=0.169 Sum_probs=86.1
Q ss_pred EEEEccCCCCchhhhhcccchhhhcc---cccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCC
Q 003163 457 LVITGPNTGGKTICLKTVGLAVMMAK---SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 533 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli~~~~q---~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~ 533 (843)
+.|.||.|+|||.|+..|+.-..... ...|+++ . .++..+...+.. .....|. . ....
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~----~f~~~~~~~~~~-----~~~~~f~-------~--~~~~ 193 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-E----KFLNDLVDSMKE-----GKLNEFR-------E--KYRK 193 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-H----HHHHHHHHHHhc-----ccHHHHH-------H--HHHh
Confidence 78999999999999999964322111 1122222 0 011112111110 0011111 1 1113
Q ss_pred CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEc-cchhHH-hhhcccc-ceeeeEEEEecccceeeEEEec
Q 003163 534 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT-HHGELK-TLKYSND-FFENACMEFDEVKLKPTYKILW 610 (843)
Q Consensus 534 ~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitT-Hd~el~-~~a~~~~-~v~ng~v~fd~~~l~ptY~l~~ 610 (843)
++++||+|||....+..........++..+.+.|.. +|++| |++... .+.++.. ++..|-+ ++-
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~-iIitsd~~p~~l~~l~~rL~SR~~~gl~-v~i----------- 260 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDREPQKLSEFQDRLVSRFQMGLV-AKL----------- 260 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCe-EEEECCCCHHHHHHHHHHHhhHHhcCce-Eee-----------
Confidence 689999999998887643333234566777777776 67766 665443 3433322 3333322 111
Q ss_pred CCCCCChHHHH----HHH--cCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003163 611 GVPGRSSAINI----AER--LGLPGIVVQNARQLYGAASAEINEVIIEMER 655 (843)
Q Consensus 611 G~~g~S~a~~i----A~~--~gl~~~ii~~A~~~~~~~~~~~e~~i~~Le~ 655 (843)
..|....-..| ++. ..+|+++++.--.....+..+++..+..|..
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~ 311 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLV 311 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 11222121122 222 3467888776666666677777777777643
No 477
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.27 E-value=0.0016 Score=68.39 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+.|+++.|+||+|+|||||+..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999988643
No 478
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.25 E-value=0.0063 Score=76.20 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=55.0
Q ss_pred EEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCC
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 535 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p 535 (843)
..+|+||.|.||||+.+.++.-... | .+|..-. ...++ +.+++.-..-......|...++.+..-+.....+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~---~-~vp~~l~-~~~~~---~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~ 272 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIIN---G-EVPEGLK-GRRVL---ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGN 272 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhc---C-CCchhhC-CCEEE---EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCC
Confidence 4789999999999999988643222 2 3332110 11110 0111110000011122333344443333334578
Q ss_pred cEEEEecCCCCC----ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003163 536 SLVLLDEIGAGT----NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 582 (843)
Q Consensus 536 ~LLLLDEP~sGl----Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~ 582 (843)
.+|++||.-+=. .. .+......+.-.+...... +|.+|...+...
T Consensus 273 ~ILfIDEih~l~~~~~~~-~~~d~~~~lkp~l~~g~l~-~IgaTt~~e~r~ 321 (857)
T PRK10865 273 VILFIDELHTMVGAGKAD-GAMDAGNMLKPALARGELH-CVGATTLDEYRQ 321 (857)
T ss_pred eEEEEecHHHhccCCCCc-cchhHHHHhcchhhcCCCe-EEEcCCCHHHHH
Confidence 899999973221 11 1112223333444443444 777777666543
No 479
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.23 E-value=0.0012 Score=75.03 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=77.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhccc--c----------cccccccc-----cccchHHHHHhhcCchhh-Hhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--G----------LHILSSEY-----AKVPWFDSVFADIGDEQS-LSQ 513 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--G----------~~vpa~~~-----~~i~~~~~i~~~ig~~q~-i~~ 513 (843)
+.| +++|+|.|--||||||+.|-.-++..-. | ..+-+..+ ..+..| +..+....+ -..
T Consensus 243 p~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpF---I~~LP~g~dT~~F 318 (448)
T PF09818_consen 243 PKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPF---INNLPGGKDTTCF 318 (448)
T ss_pred CCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHH---HhhCCCCCCCCcc
Confidence 345 9999999999999999999432221110 1 01111111 111111 222211100 011
Q ss_pred hhhhhhHHhHHHHHHHHh-CCCCcEEEEecCCCCCChhhHHHHHHHHH--------------HHH-HhcCCeEEEEEccc
Q 003163 514 SLSTFSGHLKQIGNIISQ-STSQSLVLLDEIGAGTNPLEGTALGMSLL--------------EAF-AESGSLLTIATTHH 577 (843)
Q Consensus 514 ~lstfS~~~~~l~~il~~-a~~p~LLLLDEP~sGlDp~e~~al~~~ll--------------e~L-~~~g~t~vlitTHd 577 (843)
.-..-||-+.+.+.|... -...++||+||=|++|+..-....+..++ ..| .+.|.++||++.--
T Consensus 319 sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggs 398 (448)
T PF09818_consen 319 STENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGS 398 (448)
T ss_pred cccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccc
Confidence 111224445555555433 24789999999999999866444444333 333 45688756666666
Q ss_pred hhHHhhhccccceeeeEE
Q 003163 578 GELKTLKYSNDFFENACM 595 (843)
Q Consensus 578 ~el~~~a~~~~~v~ng~v 595 (843)
.++...||+++.|.+...
T Consensus 399 gdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 399 GDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhhHhhCCEEEEecCccc
Confidence 777788888887766543
No 480
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.00061 Score=79.36 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..|.+++++||||+||||++..|+...
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 356899999999999999999997544
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.21 E-value=9.5e-05 Score=75.98 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.5
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
+++|+||+|||||||.++|..+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999654
No 482
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.19 E-value=0.00043 Score=74.30 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred HHHHHHHHh-CCCCcEEEEecCCCCCChhhHHH-HHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003163 523 KQIGNIISQ-STSQSLVLLDEIGAGTNPLEGTA-LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 595 (843)
Q Consensus 523 ~~l~~il~~-a~~p~LLLLDEP~sGlDp~e~~a-l~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v 595 (843)
.++..+... ..++++++| ||+.+|+.+-.. . +++.+...+.+ .|+.||........+.+..+.+|+.
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~-~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNM-ELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCc-EEEEchHHhhCCCCCeEEEcCCCCc
Confidence 444444443 478999999 999999633332 3 25666656666 8999999888877777777777775
No 483
>PRK02224 chromosome segregation protein; Provisional
Probab=97.17 E-value=0.00063 Score=85.39 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=43.7
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 536 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 536 ~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
+++|||||++|+|+.....+. .++..+...|.+.||++||+.++...|++++.|.
T Consensus 813 ~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~ 867 (880)
T PRK02224 813 PPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVGAADDLVRVE 867 (880)
T ss_pred CceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHHhcCeeEEee
Confidence 679999999999997766665 5667777656423999999999998888777664
No 484
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.15 E-value=0.0017 Score=69.52 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.3
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+..+++|+||||+||||+++.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 334578999999999999999874
No 485
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.00075 Score=85.07 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=58.5
Q ss_pred hhhhhhhhHHhHHHHHHH---Hh----CCC--CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003163 512 SQSLSTFSGHLKQIGNII---SQ----STS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 582 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il---~~----a~~--p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~ 582 (843)
...++++||+-+-+..+. ++ ... -++++|||||..||+.....+ ..+++.+...+.+ |+||||+.+++.
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l-~~~l~~i~~~~~q-iiIISH~eel~e 887 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKL-AEILEELLSDGRQ-IIIISHVEELKE 887 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHH-HHHHHHHHhcCCe-EEEEeChHHHHH
Confidence 356678888765443332 11 233 599999999999999555555 5677888877776 999999999999
Q ss_pred hhccccceee
Q 003163 583 LKYSNDFFEN 592 (843)
Q Consensus 583 ~a~~~~~v~n 592 (843)
+++..+.|..
T Consensus 888 ~~~~~i~V~k 897 (908)
T COG0419 888 RADVRIRVKK 897 (908)
T ss_pred hCCeEEEEEe
Confidence 9888877654
No 486
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.0014 Score=61.76 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.9
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|.||.|+||||+.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57999999999999999853
No 487
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0027 Score=72.07 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++++|+||||+||||++..|+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 346789999999999999999964
No 488
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.00093 Score=81.38 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=50.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcc---cccccccccccccchHHHHH---hhcCchhhHhhhhhhhhHHhHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---SGLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQI 525 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---~G~~vpa~~~~~i~~~~~i~---~~ig~~q~i~~~lstfS~~~~~l 525 (843)
..+++++++||||+||||++..|+......+ .-.++.. +..+++..+++. ..++..-.... ....+
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l 254 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVK-------DAADL 254 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccC-------CHHHH
Confidence 3578999999999999999999875432221 1123333 344444444332 22232111111 11223
Q ss_pred HHHHHhCCCCcEEEEecCCCC-CCh
Q 003163 526 GNIISQSTSQSLVLLDEIGAG-TNP 549 (843)
Q Consensus 526 ~~il~~a~~p~LLLLDEP~sG-lDp 549 (843)
...+..+.+.++||+|=|+.. .|.
T Consensus 255 ~~al~~~~~~D~VLIDTAGRs~~d~ 279 (767)
T PRK14723 255 RFALAALGDKHLVLIDTVGMSQRDR 279 (767)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCH
Confidence 444445567799999977633 444
No 489
>PRK06526 transposase; Provisional
Probab=97.09 E-value=0.0017 Score=69.93 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=56.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 531 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~ 531 (843)
..++-++|+||.|+|||+|...|+.-.. +.|..+ .+.-...++..+... ... ......+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v------~f~t~~~l~~~l~~~---------~~~--~~~~~~l~~ 156 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV------LFATAAQWVARLAAA---------HHA--GRLQAELVK 156 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH--HCCCch------hhhhHHHHHHHHHHH---------Hhc--CcHHHHHHH
Confidence 3455689999999999999999863222 122111 010111222222100 000 011122333
Q ss_pred CCCCcEEEEecCCCC-CChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 532 STSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 532 a~~p~LLLLDEP~sG-lDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+.+++||++||++.- .++ ....+...++....+.+ . +|+||+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~-~~~~~L~~li~~r~~~~-s-~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEP-EAANLFFQLVSSRYERA-S-LIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCH-HHHHHHHHHHHHHHhcC-C-EEEEcCCC
Confidence 467899999999754 355 44444455665544444 4 78888863
No 490
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.08 E-value=0.00066 Score=87.24 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=56.3
Q ss_pred hhhhhhhHHhHHHHHHHH-h----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 513 QSLSTFSGHLKQIGNIIS-Q----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 513 ~~lstfS~~~~~l~~il~-~----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
..+..+||+++.+..++. + +.+|+++|||||++|+|+.....+. .++..+.. ++. +|++||+..+..+|++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~-~~l~~~~~-~~~-~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVA-KLIREKAG-EAQ-FIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHH-HHHHHhcC-CCe-EEEEECcHHHHHhccee
Confidence 345678888776655542 2 3688999999999999997777765 46666554 354 89999998888888888
Q ss_pred ccee
Q 003163 588 DFFE 591 (843)
Q Consensus 588 ~~v~ 591 (843)
.+|.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 7765
No 491
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0022 Score=68.78 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=59.1
Q ss_pred EEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCC
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 535 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p 535 (843)
.++|.||.|+|||+|+..|+.-... .|..+- .+. +..++..+. .+|...-.....++..+...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~-----~it-~~~l~~~l~---------~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL--RGKSVL-----IIT-VADIMSAMK---------DTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--cCCeEE-----EEE-HHHHHHHHH---------HHHhhccccHHHHHHHhccC
Confidence 5789999999999999998643221 121110 011 112222111 01110000112233445689
Q ss_pred cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 536 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 536 ~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+||++||++.--+......+...|++.-.....+ +|+||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCCC
Confidence 9999999988766555556667777765554566 7888875
No 492
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.003 Score=68.58 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred CeEEEEEccCCCCchhhhhcccchhhh--cccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHh
Q 003163 454 TRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 531 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igli~~~--~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~ 531 (843)
+..+.|+||.|.|||.|+.+|+.-..- +....|++. ..++..+ .. .|. .....+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~---------~~l~~~l------~~---~~~----~~~~~~~~ 174 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF---------VEGFGDL------KD---DFD----LLEAKLNR 174 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH---------HHHHHHH------HH---HHH----HHHHHHHH
Confidence 456899999999999999998643221 111222222 1122211 00 110 11122344
Q ss_pred CCCCcEEEEecCCC---CCC---hhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 532 STSQSLVLLDEIGA---GTN---PLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 532 a~~p~LLLLDEP~s---GlD---p~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+...+||+||+... |.. ......+ ..++......+.. +|+||+.
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~l-f~iin~R~~~~k~-tIitsn~ 224 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQM-YSVLNYRYLNHKP-ILISSEL 224 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHH-HHHHHHHHHCCCC-EEEECCC
Confidence 56889999999954 432 2233334 4566666666666 7888885
No 493
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.01 E-value=0.004 Score=77.56 Aligned_cols=49 Identities=18% Similarity=0.080 Sum_probs=39.1
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
...|.++++|||..++|.......+..+++.+++.|+. ++++||+.+..
T Consensus 640 ~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~-~i~~TQ~~~d~ 688 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTF-VIFATQSVEDA 688 (800)
T ss_pred cCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 46899999999999999324454556777888888886 99999997665
No 494
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.99 E-value=0.0042 Score=66.84 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=28.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+-..++.+.-+ ..|++++|.||.|+|||||+..++.
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 44556666544 7889999999999999999998753
No 495
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.98 E-value=0.0034 Score=63.76 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.++.|+||.|+||||++-.++.-
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~ 55 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAA 55 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988543
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.00042 Score=78.40 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=25.8
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+..+.++. ..+.+++++||||+||||++..|+..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34334333 56789999999999999999998654
No 497
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.96 E-value=0.00032 Score=80.88 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLK 472 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK 472 (843)
..++.+++++ ..|++++|+|||||||||||+
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3578899999 889999999999999999999
No 498
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.95 E-value=0.0031 Score=72.94 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.++|.||+|+|||++.|.|+.
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999964
No 499
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.94 E-value=0.0069 Score=65.88 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCCchhhhhcccch
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
++..++++||||+||||+++.|+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999998654
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.94 E-value=0.0031 Score=65.88 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
+.|+++.|.||+|+|||||+..++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 568899999999999999999885443
Done!