Query 003163
Match_columns 843
No_of_seqs 547 out of 4024
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 15:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 2.1E-67 7.3E-72 636.1 35.6 506 44-641 264-795 (800)
2 1ewq_A DNA mismatch repair pro 100.0 5E-61 1.7E-65 577.7 41.4 490 44-641 247-761 (765)
3 3thx_B DNA mismatch repair pro 100.0 1.2E-58 4E-63 564.6 45.5 510 46-639 318-874 (918)
4 3thx_A DNA mismatch repair pro 100.0 4.4E-57 1.5E-61 552.2 40.5 517 46-641 299-850 (934)
5 2o8b_B DNA mismatch repair pro 100.0 6.3E-55 2.1E-59 538.9 33.7 517 46-640 394-983 (1022)
6 2pcj_A ABC transporter, lipopr 99.9 8E-22 2.7E-26 205.1 13.9 157 441-599 16-221 (224)
7 3tif_A Uncharacterized ABC tra 99.9 2.2E-21 7.5E-26 203.3 14.9 156 442-599 18-227 (235)
8 3gfo_A Cobalt import ATP-bindi 99.9 2E-21 6.9E-26 208.3 14.1 157 441-599 20-226 (275)
9 4g1u_C Hemin import ATP-bindin 99.9 2.1E-21 7.1E-26 207.2 13.2 158 440-599 22-230 (266)
10 1vpl_A ABC transporter, ATP-bi 99.8 4.5E-21 1.5E-25 203.5 14.7 157 440-598 26-227 (256)
11 1b0u_A Histidine permease; ABC 99.8 4.7E-21 1.6E-25 204.0 14.6 157 440-598 17-234 (262)
12 2olj_A Amino acid ABC transpor 99.8 7E-21 2.4E-25 202.8 15.2 158 440-599 35-241 (263)
13 3fvq_A Fe(3+) IONS import ATP- 99.8 7E-21 2.4E-25 210.8 15.2 158 440-599 15-221 (359)
14 1g6h_A High-affinity branched- 99.8 4.6E-21 1.6E-25 203.4 12.5 157 440-598 18-234 (257)
15 1ji0_A ABC transporter; ATP bi 99.8 5.6E-21 1.9E-25 200.8 12.9 157 440-598 17-220 (240)
16 3tui_C Methionine import ATP-b 99.8 7.4E-21 2.5E-25 210.9 14.0 156 442-599 41-246 (366)
17 3rlf_A Maltose/maltodextrin im 99.8 1.6E-20 5.4E-25 209.4 13.9 157 440-599 14-216 (381)
18 2nq2_C Hypothetical ABC transp 99.8 2.5E-20 8.6E-25 197.4 14.6 155 441-598 17-209 (253)
19 1z47_A CYSA, putative ABC-tran 99.8 3E-20 1E-24 205.7 15.4 156 441-598 27-227 (355)
20 2yz2_A Putative ABC transporte 99.8 2.2E-20 7.5E-25 199.2 13.2 156 442-599 20-220 (266)
21 2yyz_A Sugar ABC transporter, 99.8 3.8E-20 1.3E-24 205.2 15.2 157 440-598 14-215 (359)
22 2ff7_A Alpha-hemolysin translo 99.8 2.8E-20 9.7E-25 196.3 13.5 156 441-599 21-225 (247)
23 2onk_A Molybdate/tungstate ABC 99.8 2E-20 7E-25 196.7 12.2 153 444-599 14-209 (240)
24 2qi9_C Vitamin B12 import ATP- 99.8 3E-20 1E-24 196.5 13.3 154 443-598 14-214 (249)
25 2ihy_A ABC transporter, ATP-bi 99.8 2.7E-20 9.4E-25 199.9 12.3 158 440-599 32-245 (279)
26 2ixe_A Antigen peptide transpo 99.8 2.3E-20 7.8E-25 199.7 11.3 155 442-598 32-237 (271)
27 2it1_A 362AA long hypothetical 99.8 4.4E-20 1.5E-24 204.9 13.6 157 440-598 14-215 (362)
28 1g29_1 MALK, maltose transport 99.8 5.2E-20 1.8E-24 205.2 14.1 157 440-599 14-222 (372)
29 2pze_A Cystic fibrosis transme 99.8 1.8E-20 6.2E-25 195.5 9.3 156 441-599 20-211 (229)
30 1oxx_K GLCV, glucose, ABC tran 99.8 4.3E-20 1.5E-24 204.6 12.8 156 441-598 15-222 (353)
31 2d2e_A SUFC protein; ABC-ATPas 99.8 3.4E-20 1.2E-24 196.0 11.3 157 440-598 14-225 (250)
32 1v43_A Sugar-binding transport 99.8 6E-20 2.1E-24 204.5 13.6 157 440-598 22-223 (372)
33 3d31_A Sulfate/molybdate ABC t 99.8 6.1E-20 2.1E-24 202.9 13.3 154 441-598 13-209 (348)
34 2zu0_C Probable ATP-dependent 99.8 6.5E-20 2.2E-24 195.7 11.3 157 440-598 31-246 (267)
35 2pjz_A Hypothetical protein ST 99.8 1.5E-19 5E-24 192.7 12.3 150 442-599 18-208 (263)
36 1mv5_A LMRA, multidrug resista 99.8 4.4E-20 1.5E-24 194.2 8.2 153 441-597 14-217 (243)
37 1sgw_A Putative ABC transporte 99.8 1.1E-19 3.7E-24 188.0 10.7 143 443-588 23-204 (214)
38 2cbz_A Multidrug resistance-as 99.8 8.8E-20 3E-24 191.4 9.0 155 441-598 17-209 (237)
39 2ghi_A Transport protein; mult 99.8 2.2E-19 7.4E-24 191.0 11.2 152 442-598 33-234 (260)
40 2bbs_A Cystic fibrosis transme 99.8 2.4E-19 8.2E-24 193.6 9.1 154 442-598 51-239 (290)
41 3nh6_A ATP-binding cassette SU 99.8 1.1E-18 3.7E-23 189.8 12.5 156 440-599 65-270 (306)
42 3gd7_A Fusion complex of cysti 99.7 1.5E-18 5.1E-23 194.4 10.5 154 440-599 32-235 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.7 1.9E-17 6.4E-22 193.1 12.3 146 443-592 36-233 (538)
44 3ux8_A Excinuclease ABC, A sub 99.7 2.2E-17 7.6E-22 197.3 12.5 85 512-598 197-290 (670)
45 3ozx_A RNAse L inhibitor; ATP 99.7 2.5E-17 8.4E-22 192.0 12.2 145 445-592 284-461 (538)
46 3j16_B RLI1P; ribosome recycli 99.7 2E-17 6.9E-22 195.0 10.4 147 443-592 361-543 (608)
47 2iw3_A Elongation factor 3A; a 99.7 6.6E-17 2.3E-21 197.9 13.7 152 440-596 446-624 (986)
48 2yl4_A ATP-binding cassette SU 99.7 9.4E-17 3.2E-21 189.4 14.4 155 442-599 357-563 (595)
49 1yqt_A RNAse L inhibitor; ATP- 99.7 7.4E-17 2.5E-21 188.1 13.3 147 444-592 301-477 (538)
50 3bk7_A ABC transporter ATP-bin 99.7 6E-17 2E-21 191.2 12.6 146 443-592 106-303 (607)
51 3b60_A Lipid A export ATP-bind 99.7 8.2E-17 2.8E-21 189.4 13.7 153 442-598 356-559 (582)
52 3b5x_A Lipid A export ATP-bind 99.7 8.2E-17 2.8E-21 189.4 13.7 152 442-598 356-559 (582)
53 4a82_A Cystic fibrosis transme 99.7 7.7E-17 2.6E-21 189.5 12.9 155 441-599 353-557 (578)
54 3qf4_B Uncharacterized ABC tra 99.7 9.3E-17 3.2E-21 189.6 13.4 156 441-599 367-571 (598)
55 3ozx_A RNAse L inhibitor; ATP 99.7 8.1E-17 2.8E-21 187.6 12.3 144 445-592 16-212 (538)
56 3bk7_A ABC transporter ATP-bin 99.7 8.8E-17 3E-21 189.7 12.7 147 444-592 371-547 (607)
57 3qf4_A ABC transporter, ATP-bi 99.7 7.8E-17 2.7E-21 189.9 11.6 156 440-599 354-559 (587)
58 3ux8_A Excinuclease ABC, A sub 99.7 1.2E-16 4.1E-21 191.0 13.4 86 512-599 538-633 (670)
59 3j16_B RLI1P; ribosome recycli 99.7 6.9E-17 2.4E-21 190.5 10.6 145 444-591 93-295 (608)
60 2iw3_A Elongation factor 3A; a 99.6 2E-16 6.9E-21 193.7 9.5 91 502-597 884-978 (986)
61 4gp7_A Metallophosphoesterase; 99.6 5E-17 1.7E-21 161.4 3.2 132 447-583 1-164 (171)
62 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 2E-15 7E-20 167.9 8.1 81 514-596 276-363 (365)
63 2vf7_A UVRA2, excinuclease ABC 99.6 8E-15 2.7E-19 177.9 13.8 87 511-599 724-820 (842)
64 4aby_A DNA repair protein RECN 99.6 4.6E-15 1.6E-19 166.5 10.6 109 518-639 296-413 (415)
65 3pih_A Uvrabc system protein A 99.5 1E-14 3.4E-19 178.4 11.5 86 512-599 800-895 (916)
66 2ygr_A Uvrabc system protein A 99.5 1.8E-14 6.2E-19 176.0 12.9 87 511-599 857-953 (993)
67 2r6f_A Excinuclease ABC subuni 99.5 1.6E-14 5.6E-19 175.8 11.6 86 511-598 839-934 (972)
68 3g5u_A MCG1178, multidrug resi 99.5 2.9E-14 9.9E-19 181.4 11.8 153 442-598 403-605 (1284)
69 3g5u_A MCG1178, multidrug resi 99.5 2.1E-14 7.3E-19 182.6 9.5 154 442-599 1046-1251(1284)
70 4f4c_A Multidrug resistance pr 99.4 4.6E-13 1.6E-17 170.8 14.3 153 441-598 430-633 (1321)
71 1ye8_A Protein THEP1, hypothet 99.4 6.6E-14 2.3E-18 140.4 4.5 126 456-586 2-152 (178)
72 1e69_A Chromosome segregation 99.4 4.5E-13 1.5E-17 146.2 11.5 79 515-596 217-302 (322)
73 3b85_A Phosphate starvation-in 99.4 5.1E-14 1.8E-18 144.8 1.7 128 443-583 14-163 (208)
74 3qkt_A DNA double-strand break 99.4 8.4E-13 2.9E-17 145.1 11.4 75 515-591 246-327 (339)
75 2ehv_A Hypothetical protein PH 99.4 6.2E-13 2.1E-17 137.6 8.6 59 532-591 133-206 (251)
76 4f4c_A Multidrug resistance pr 99.4 9.4E-13 3.2E-17 168.0 11.8 154 441-599 1091-1297(1321)
77 2npi_A Protein CLP1; CLP1-PCF1 99.3 1.5E-13 5.3E-18 157.1 -1.2 131 447-586 130-313 (460)
78 4a74_A DNA repair and recombin 99.3 2E-12 6.7E-17 132.1 5.6 140 452-592 23-199 (231)
79 1znw_A Guanylate kinase, GMP k 99.3 1.8E-13 6.2E-18 139.5 -2.9 57 532-590 139-201 (207)
80 1cr0_A DNA primase/helicase; R 99.2 8.6E-12 3E-16 133.7 6.8 151 441-595 21-237 (296)
81 2w0m_A SSO2452; RECA, SSPF, un 99.2 5.3E-11 1.8E-15 121.2 9.5 139 452-593 21-192 (235)
82 1tf7_A KAIC; homohexamer, hexa 99.2 1.6E-11 5.6E-16 142.6 5.8 151 439-592 22-209 (525)
83 2pt7_A CAG-ALFA; ATPase, prote 99.1 5.9E-12 2E-16 138.2 0.6 129 444-594 160-291 (330)
84 2cvh_A DNA repair and recombin 99.1 1.6E-10 5.4E-15 117.2 10.6 125 452-579 18-157 (220)
85 3ec2_A DNA replication protein 99.1 3.6E-11 1.2E-15 119.3 5.1 106 453-578 37-143 (180)
86 1nlf_A Regulatory protein REPA 99.1 6.9E-11 2.4E-15 125.8 7.2 126 452-581 28-184 (279)
87 1tq4_A IIGP1, interferon-induc 99.1 6.2E-12 2.1E-16 141.9 -3.2 142 442-587 36-247 (413)
88 1tf7_A KAIC; homohexamer, hexa 99.1 1E-10 3.4E-15 136.0 6.7 136 452-594 279-444 (525)
89 2eyu_A Twitching motility prot 99.1 4.7E-11 1.6E-15 126.8 3.3 124 444-590 16-145 (261)
90 3b9q_A Chloroplast SRP recepto 99.0 3.6E-10 1.2E-14 122.6 7.2 32 447-478 92-124 (302)
91 3jvv_A Twitching mobility prot 98.9 2.9E-10 1E-14 126.0 4.5 124 452-591 121-244 (356)
92 2og2_A Putative signal recogni 98.9 1.1E-09 3.7E-14 121.4 8.0 119 447-578 149-314 (359)
93 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 1.8E-09 6.1E-14 105.2 8.4 77 512-590 52-135 (148)
94 2obl_A ESCN; ATPase, hydrolase 98.9 1.4E-10 4.7E-15 128.2 0.4 145 441-599 58-248 (347)
95 1n0w_A DNA repair protein RAD5 98.9 2E-09 6.8E-14 110.7 8.3 126 452-579 22-175 (243)
96 1pzn_A RAD51, DNA repair and r 98.9 1.7E-09 5.7E-14 119.6 7.1 126 452-579 129-287 (349)
97 2kjq_A DNAA-related protein; s 98.9 4E-09 1.4E-13 102.5 8.3 87 453-577 35-124 (149)
98 2jeo_A Uridine-cytidine kinase 98.8 2.9E-10 9.9E-15 118.8 -0.0 38 440-477 10-48 (245)
99 2i3b_A HCR-ntpase, human cance 98.8 1.8E-10 6.3E-15 116.5 -1.6 26 454-479 1-26 (189)
100 3asz_A Uridine kinase; cytidin 98.7 3.7E-11 1.3E-15 121.9 -11.0 46 532-578 109-161 (211)
101 2dpy_A FLII, flagellum-specifi 98.7 1.1E-09 3.6E-14 124.7 -0.5 145 441-599 144-337 (438)
102 2v9p_A Replication protein E1; 98.7 1.3E-10 4.4E-15 126.1 -7.7 130 442-598 113-258 (305)
103 3aez_A Pantothenate kinase; tr 98.7 5.7E-10 2E-14 121.5 -2.7 117 452-581 88-231 (312)
104 1z6g_A Guanylate kinase; struc 98.7 9.6E-10 3.3E-14 113.2 -1.3 136 444-581 12-197 (218)
105 3sop_A Neuronal-specific septi 98.7 2.9E-09 9.9E-14 113.6 1.3 23 457-479 5-27 (270)
106 3pih_A Uvrabc system protein A 98.6 4.2E-08 1.5E-12 120.2 9.2 97 501-599 447-553 (916)
107 2ewv_A Twitching motility prot 98.6 2.4E-08 8.1E-13 111.3 6.4 116 452-589 134-255 (372)
108 3szr_A Interferon-induced GTP- 98.6 2.8E-09 9.7E-14 126.0 -2.2 48 532-580 144-198 (608)
109 1s96_A Guanylate kinase, GMP k 98.6 1.9E-08 6.4E-13 104.1 4.1 116 452-581 14-143 (219)
110 2r6f_A Excinuclease ABC subuni 98.6 6.4E-08 2.2E-12 118.3 9.0 96 502-599 488-593 (972)
111 2ygr_A Uvrabc system protein A 98.6 7E-08 2.4E-12 118.4 8.3 95 502-598 505-609 (993)
112 1lw7_A Transcriptional regulat 98.6 1.3E-08 4.4E-13 112.7 1.7 58 532-590 275-341 (365)
113 2vf7_A UVRA2, excinuclease ABC 98.5 1.5E-07 5.1E-12 114.6 10.1 96 501-598 362-467 (842)
114 3lda_A DNA repair protein RAD5 98.5 1.6E-07 5.4E-12 105.6 8.6 126 452-578 176-328 (400)
115 1rj9_A FTSY, signal recognitio 98.4 2E-07 6.7E-12 101.1 6.9 27 452-478 100-126 (304)
116 2qnr_A Septin-2, protein NEDD5 98.4 9.8E-08 3.4E-12 103.2 4.0 32 441-477 10-41 (301)
117 2dr3_A UPF0273 protein PH0284; 98.4 8.4E-07 2.9E-11 91.1 10.6 46 533-579 127-174 (247)
118 2px0_A Flagellar biosynthesis 98.4 3.4E-07 1.2E-11 98.9 6.4 156 451-628 102-268 (296)
119 1sxj_E Activator 1 40 kDa subu 98.3 4.1E-07 1.4E-11 99.1 6.8 44 532-579 132-175 (354)
120 2qag_C Septin-7; cell cycle, c 98.3 9.4E-08 3.2E-12 108.0 1.2 34 441-479 23-56 (418)
121 3kta_B Chromosome segregation 98.3 9.7E-07 3.3E-11 88.1 7.8 75 514-591 61-140 (173)
122 4ad8_A DNA repair protein RECN 98.3 9.5E-07 3.2E-11 102.3 8.9 118 513-639 392-515 (517)
123 2zr9_A Protein RECA, recombina 98.2 7.4E-06 2.5E-10 90.4 12.0 122 452-578 59-198 (349)
124 2qag_B Septin-6, protein NEDD5 98.1 3.5E-07 1.2E-11 103.3 0.8 47 531-578 173-219 (427)
125 2gza_A Type IV secretion syste 98.1 4.3E-07 1.5E-11 100.6 0.2 132 444-590 164-299 (361)
126 3e70_C DPA, signal recognition 98.1 3.2E-06 1.1E-10 92.6 6.1 27 452-478 127-153 (328)
127 1htw_A HI0065; nucleotide-bind 98.0 3.9E-07 1.3E-11 89.5 -2.1 37 442-478 20-57 (158)
128 1w1w_A Structural maintenance 98.0 5.3E-06 1.8E-10 93.7 6.6 75 515-591 331-410 (430)
129 2bbw_A Adenylate kinase 4, AK4 98.0 1.4E-06 4.9E-11 90.6 1.0 23 453-475 26-48 (246)
130 3auy_A DNA double-strand break 98.0 9.5E-06 3.2E-10 90.0 7.5 73 516-591 279-359 (371)
131 2yhs_A FTSY, cell division pro 97.8 1.5E-05 5.1E-10 91.5 7.0 34 445-478 283-317 (503)
132 1pui_A ENGB, probable GTP-bind 97.8 8.1E-06 2.8E-10 81.7 3.6 42 526-568 160-201 (210)
133 1udx_A The GTP-binding protein 97.8 9.6E-06 3.3E-10 91.5 3.7 124 445-577 147-308 (416)
134 1fnn_A CDC6P, cell division co 97.7 3.7E-05 1.3E-09 84.1 7.7 121 456-581 46-172 (389)
135 1ls1_A Signal recognition part 97.7 2.2E-05 7.6E-10 84.5 5.6 32 446-478 91-122 (295)
136 2o5v_A DNA replication and rep 97.7 2.7E-05 9.3E-10 86.2 5.7 74 517-598 265-348 (359)
137 3tr0_A Guanylate kinase, GMP k 97.6 1.5E-05 5E-10 79.7 1.8 26 452-477 5-30 (205)
138 2r6a_A DNAB helicase, replicat 97.6 6.3E-05 2.1E-09 85.7 7.2 36 444-479 192-228 (454)
139 3lnc_A Guanylate kinase, GMP k 97.6 1.4E-05 4.8E-10 82.1 1.5 34 444-477 16-51 (231)
140 1odf_A YGR205W, hypothetical 3 97.6 9.6E-06 3.3E-10 87.2 -0.0 24 453-476 30-53 (290)
141 2ce7_A Cell division protein F 97.6 0.00013 4.6E-09 83.6 9.3 102 457-581 52-167 (476)
142 2z4s_A Chromosomal replication 97.6 7E-05 2.4E-09 85.0 6.5 103 455-578 131-237 (440)
143 3hr8_A Protein RECA; alpha and 97.5 0.00026 8.9E-09 78.3 10.2 26 452-477 59-84 (356)
144 1v5w_A DMC1, meiotic recombina 97.5 0.00017 5.9E-09 79.1 8.6 125 452-578 120-274 (343)
145 1vma_A Cell division protein F 97.5 6.8E-05 2.3E-09 81.2 5.0 31 448-478 97-128 (306)
146 2qby_A CDC6 homolog 1, cell di 97.5 2.1E-05 7.1E-10 85.6 0.8 125 453-581 44-176 (386)
147 3euj_A Chromosome partition pr 97.4 4.9E-05 1.7E-09 87.2 3.1 37 442-479 17-54 (483)
148 2ius_A DNA translocase FTSK; n 97.4 0.00011 3.7E-09 84.9 5.9 23 453-475 166-188 (512)
149 3c8u_A Fructokinase; YP_612366 97.4 4.8E-05 1.6E-09 77.0 2.4 28 451-478 19-46 (208)
150 3a00_A Guanylate kinase, GMP k 97.4 3.9E-05 1.3E-09 76.2 1.1 24 454-477 1-24 (186)
151 1lvg_A Guanylate kinase, GMP k 97.3 5.5E-05 1.9E-09 76.3 1.0 25 453-477 3-27 (198)
152 1zp6_A Hypothetical protein AT 97.3 7.6E-05 2.6E-09 73.7 2.0 26 452-477 7-32 (191)
153 3kta_A Chromosome segregation 97.3 9.1E-05 3.1E-09 72.8 2.4 31 446-477 18-49 (182)
154 2w58_A DNAI, primosome compone 97.2 0.00012 4.1E-09 73.2 3.2 22 455-476 55-76 (202)
155 3bos_A Putative DNA replicatio 97.2 0.00048 1.6E-08 69.6 6.6 24 453-476 51-74 (242)
156 2z43_A DNA repair and recombin 97.1 0.0005 1.7E-08 74.7 6.9 125 452-578 105-258 (324)
157 3pxg_A Negative regulator of g 97.1 0.0012 4.2E-08 75.3 10.4 21 457-477 204-224 (468)
158 3kl4_A SRP54, signal recogniti 97.1 0.00049 1.7E-08 78.0 6.6 26 452-477 95-120 (433)
159 1qvr_A CLPB protein; coiled co 97.1 0.0053 1.8E-07 75.2 16.3 22 456-477 193-214 (854)
160 1l8q_A Chromosomal replication 97.1 0.00036 1.2E-08 75.2 5.2 22 455-476 38-59 (324)
161 2e87_A Hypothetical protein PH 97.1 0.00029 9.9E-09 77.5 4.6 115 455-578 168-292 (357)
162 2xau_A PRE-mRNA-splicing facto 97.0 0.00027 9.1E-09 85.8 3.8 54 530-585 204-260 (773)
163 1kgd_A CASK, peripheral plasma 97.0 0.00018 6.3E-09 71.1 1.9 25 453-477 4-28 (180)
164 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 2.3E-06 8E-11 95.8 -13.4 56 534-593 139-199 (392)
165 3b9p_A CG5977-PA, isoform A; A 97.0 0.0014 4.8E-08 69.3 8.8 23 454-476 54-76 (297)
166 2bdt_A BH3686; alpha-beta prot 97.0 0.00019 6.5E-09 71.0 1.6 23 454-476 2-24 (189)
167 4eun_A Thermoresistant glucoki 97.0 0.00021 7.1E-09 71.7 1.8 25 452-476 27-51 (200)
168 1ixz_A ATP-dependent metallopr 96.9 0.0014 4.9E-08 67.8 7.7 33 443-477 39-72 (254)
169 2j41_A Guanylate kinase; GMP, 96.9 0.00026 8.7E-09 70.6 1.8 26 452-477 4-29 (207)
170 1sq5_A Pantothenate kinase; P- 96.9 0.00026 9E-09 76.4 1.9 26 452-477 78-103 (308)
171 3vaa_A Shikimate kinase, SK; s 96.8 0.00031 1.1E-08 70.4 1.8 35 441-475 11-46 (199)
172 2qm8_A GTPase/ATPase; G protei 96.8 0.00015 5.2E-09 79.5 -0.8 37 442-478 42-79 (337)
173 2o5v_A DNA replication and rep 96.8 0.00042 1.4E-08 76.7 2.5 34 444-478 16-50 (359)
174 2vp4_A Deoxynucleoside kinase; 96.8 0.00048 1.7E-08 70.8 2.8 26 452-477 18-43 (230)
175 3tau_A Guanylate kinase, GMP k 96.8 0.0004 1.4E-08 70.3 2.0 25 452-476 6-30 (208)
176 2v1u_A Cell division control p 96.7 0.00062 2.1E-08 74.0 3.4 24 453-476 43-66 (387)
177 1zu4_A FTSY; GTPase, signal re 96.7 0.0026 8.9E-08 69.2 8.2 32 446-477 96-128 (320)
178 1u94_A RECA protein, recombina 96.7 0.0039 1.3E-07 68.8 9.2 121 452-578 61-200 (356)
179 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0007 2.4E-08 65.3 2.8 23 454-476 23-45 (149)
180 2i1q_A DNA repair and recombin 96.6 0.002 6.8E-08 69.5 6.4 25 452-476 96-120 (322)
181 3uie_A Adenylyl-sulfate kinase 96.6 0.00058 2E-08 68.5 1.9 26 452-477 23-48 (200)
182 1jbk_A CLPB protein; beta barr 96.6 0.0045 1.5E-07 59.6 8.2 23 454-476 43-65 (195)
183 1knq_A Gluconate kinase; ALFA/ 96.6 0.00062 2.1E-08 66.3 2.0 25 452-476 6-30 (175)
184 1kag_A SKI, shikimate kinase I 96.6 0.00048 1.7E-08 66.7 1.2 23 454-476 4-26 (173)
185 1p9r_A General secretion pathw 96.6 0.0006 2.1E-08 76.9 2.0 33 444-477 158-190 (418)
186 2p65_A Hypothetical protein PF 96.5 0.0031 1.1E-07 60.8 6.4 23 454-476 43-65 (187)
187 4e22_A Cytidylate kinase; P-lo 96.5 0.00071 2.4E-08 70.7 1.5 24 452-475 25-48 (252)
188 1njg_A DNA polymerase III subu 96.4 0.0024 8.3E-08 63.7 5.2 21 455-475 46-66 (250)
189 2oap_1 GSPE-2, type II secreti 96.4 0.00032 1.1E-08 81.2 -1.5 35 443-477 248-283 (511)
190 1qhl_A Protein (cell division 96.3 0.00012 4E-09 76.1 -5.4 29 447-477 22-50 (227)
191 1nij_A Hypothetical protein YJ 96.3 0.001 3.6E-08 72.0 1.9 23 455-477 5-27 (318)
192 1rz3_A Hypothetical protein rb 96.3 0.0012 4E-08 66.4 2.0 25 452-476 20-44 (201)
193 2b8t_A Thymidine kinase; deoxy 96.3 0.0022 7.6E-08 66.3 4.1 145 452-612 10-170 (223)
194 4a1f_A DNAB helicase, replicat 96.3 0.0034 1.1E-07 68.9 5.6 91 452-546 44-139 (338)
195 2qgz_A Helicase loader, putati 96.3 0.0042 1.4E-07 67.0 6.1 23 454-476 152-174 (308)
196 3cf0_A Transitional endoplasmi 96.2 0.005 1.7E-07 65.9 6.6 24 453-476 48-71 (301)
197 3k1j_A LON protease, ATP-depen 96.2 0.00087 3E-08 79.0 0.7 40 439-478 44-84 (604)
198 3qks_A DNA double-strand break 96.2 0.0017 5.8E-08 65.8 2.7 22 454-475 23-44 (203)
199 1ypw_A Transitional endoplasmi 96.2 0.0051 1.7E-07 75.0 7.3 24 453-476 237-260 (806)
200 1u0l_A Probable GTPase ENGC; p 96.2 0.0013 4.4E-08 70.7 1.8 24 453-476 168-191 (301)
201 3h4m_A Proteasome-activating n 96.2 0.0025 8.5E-08 66.9 4.0 22 455-476 52-73 (285)
202 3ney_A 55 kDa erythrocyte memb 96.2 0.0014 4.8E-08 66.5 1.9 25 452-476 17-41 (197)
203 1lv7_A FTSH; alpha/beta domain 96.2 0.0054 1.8E-07 63.6 6.5 20 457-476 48-67 (257)
204 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.01 3.4E-07 64.7 8.8 25 452-476 121-145 (331)
205 1w1w_A Structural maintenance 96.2 0.0015 5.1E-08 73.6 2.4 30 448-478 21-50 (430)
206 2x8a_A Nuclear valosin-contain 96.2 0.00056 1.9E-08 72.6 -1.4 34 442-477 33-67 (274)
207 3nwj_A ATSK2; P loop, shikimat 96.1 0.00044 1.5E-08 72.7 -2.5 36 441-476 31-70 (250)
208 3lxx_A GTPase IMAP family memb 96.1 0.0043 1.5E-07 63.6 4.9 46 531-577 109-155 (239)
209 2rcn_A Probable GTPase ENGC; Y 96.0 0.0017 5.7E-08 71.9 1.7 25 452-476 213-237 (358)
210 2yv5_A YJEQ protein; hydrolase 96.0 0.0018 6.1E-08 69.8 1.7 23 453-475 164-186 (302)
211 4fcw_A Chaperone protein CLPB; 96.0 0.014 4.7E-07 61.8 8.6 24 455-478 48-71 (311)
212 1svm_A Large T antigen; AAA+ f 96.0 0.00078 2.7E-08 75.0 -1.1 34 443-476 157-191 (377)
213 3tqc_A Pantothenate kinase; bi 96.0 0.0017 5.8E-08 70.8 1.5 23 455-477 93-115 (321)
214 1jjv_A Dephospho-COA kinase; P 96.0 0.0019 6.4E-08 64.6 1.6 21 456-476 4-24 (206)
215 2dy1_A Elongation factor G; tr 95.9 0.0052 1.8E-07 73.3 5.2 25 452-476 7-31 (665)
216 3llm_A ATP-dependent RNA helic 95.9 0.0059 2E-07 62.7 4.9 23 453-475 75-97 (235)
217 2q6t_A DNAB replication FORK h 95.9 0.019 6.6E-07 64.9 9.6 27 452-478 198-224 (444)
218 3t15_A Ribulose bisphosphate c 95.8 0.0066 2.3E-07 64.8 5.2 22 455-476 37-58 (293)
219 2if2_A Dephospho-COA kinase; a 95.8 0.0024 8.3E-08 63.6 1.5 21 456-476 3-23 (204)
220 2dhr_A FTSH; AAA+ protein, hex 95.8 0.0093 3.2E-07 68.7 6.5 32 444-477 55-87 (499)
221 2qt1_A Nicotinamide riboside k 95.8 0.003 1E-07 63.3 2.0 25 452-476 19-43 (207)
222 3auy_A DNA double-strand break 95.8 0.0041 1.4E-07 68.7 3.3 30 447-476 18-47 (371)
223 1t9h_A YLOQ, probable GTPase E 95.7 0.0013 4.4E-08 71.3 -0.9 25 452-476 171-195 (307)
224 1cke_A CK, MSSA, protein (cyti 95.7 0.003 1E-07 63.8 1.8 22 455-476 6-27 (227)
225 1xp8_A RECA protein, recombina 95.7 0.03 1E-06 62.0 9.8 121 452-578 72-211 (366)
226 3syl_A Protein CBBX; photosynt 95.6 0.09 3.1E-06 55.5 12.9 23 454-476 67-89 (309)
227 3bh0_A DNAB-like replicative h 95.6 0.05 1.7E-06 58.7 10.9 25 452-476 66-90 (315)
228 2pez_A Bifunctional 3'-phospho 95.6 0.0041 1.4E-07 60.8 2.0 25 452-476 3-27 (179)
229 1oix_A RAS-related protein RAB 95.5 0.0036 1.2E-07 61.9 1.4 22 456-477 31-52 (191)
230 2f1r_A Molybdopterin-guanine d 95.5 0.002 6.8E-08 63.8 -0.6 23 455-477 3-25 (171)
231 1iy2_A ATP-dependent metallopr 95.5 0.0017 5.7E-08 68.5 -1.3 33 443-477 63-96 (278)
232 3d8b_A Fidgetin-like protein 1 95.4 0.029 9.8E-07 61.5 8.6 23 454-476 117-139 (357)
233 2f9l_A RAB11B, member RAS onco 95.4 0.0038 1.3E-07 61.9 1.2 21 457-477 8-28 (199)
234 4ad8_A DNA repair protein RECN 95.3 0.003 1E-07 73.0 -0.1 33 444-477 50-83 (517)
235 3pxi_A Negative regulator of g 95.3 0.064 2.2E-06 64.7 11.5 22 456-477 203-224 (758)
236 2r8r_A Sensor protein; KDPD, P 95.2 0.0069 2.3E-07 62.8 2.5 46 534-580 84-129 (228)
237 2qor_A Guanylate kinase; phosp 95.2 0.005 1.7E-07 61.7 1.5 24 452-475 10-33 (204)
238 1in4_A RUVB, holliday junction 95.2 0.0043 1.5E-07 67.4 1.0 23 455-477 52-74 (334)
239 2ffh_A Protein (FFH); SRP54, s 95.2 0.015 5.2E-07 65.6 5.4 31 446-477 91-121 (425)
240 4b4t_L 26S protease subunit RP 95.2 0.065 2.2E-06 60.7 10.4 21 456-476 217-237 (437)
241 3dm5_A SRP54, signal recogniti 95.1 0.021 7.1E-07 64.8 6.2 24 453-476 99-122 (443)
242 3cr8_A Sulfate adenylyltranfer 95.0 0.0046 1.6E-07 72.1 0.6 26 452-477 367-392 (552)
243 3m6a_A ATP-dependent protease 95.0 0.012 4.1E-07 68.5 4.0 26 453-478 107-132 (543)
244 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.049 1.7E-06 55.9 8.2 22 455-476 40-61 (262)
245 3pfi_A Holliday junction ATP-d 95.0 0.043 1.5E-06 58.9 8.0 20 456-475 57-76 (338)
246 1sxj_D Activator 1 41 kDa subu 95.0 0.019 6.4E-07 61.8 5.1 21 457-477 61-81 (353)
247 1w5s_A Origin recognition comp 94.9 0.028 9.6E-07 61.6 6.4 22 454-475 50-73 (412)
248 3co5_A Putative two-component 94.9 0.089 3E-06 49.6 9.0 20 457-476 30-49 (143)
249 3t61_A Gluconokinase; PSI-biol 94.9 0.0068 2.3E-07 60.4 1.3 23 454-476 18-40 (202)
250 1y63_A LMAJ004144AAA protein; 94.8 0.0089 3E-07 59.0 1.9 28 448-475 3-31 (184)
251 2chg_A Replication factor C sm 94.8 0.094 3.2E-06 51.4 9.3 19 457-475 41-59 (226)
252 3cm0_A Adenylate kinase; ATP-b 94.7 0.0092 3.2E-07 58.3 1.7 23 453-475 3-25 (186)
253 4eaq_A DTMP kinase, thymidylat 94.7 0.01 3.6E-07 61.1 2.0 25 452-476 24-48 (229)
254 3eie_A Vacuolar protein sortin 94.7 0.034 1.1E-06 59.9 6.1 22 455-476 52-73 (322)
255 2yvu_A Probable adenylyl-sulfa 94.6 0.011 3.8E-07 58.1 2.0 25 452-476 11-35 (186)
256 3cmw_A Protein RECA, recombina 94.6 0.075 2.5E-06 69.2 10.0 120 452-577 730-868 (1706)
257 1sxj_A Activator 1 95 kDa subu 94.5 0.028 9.6E-07 64.8 5.4 23 454-476 77-99 (516)
258 2zts_A Putative uncharacterize 94.5 0.1 3.6E-06 52.8 9.0 46 532-578 133-182 (251)
259 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.091 3.1E-06 56.7 8.7 22 455-476 46-67 (322)
260 1jr3_A DNA polymerase III subu 94.4 0.036 1.2E-06 60.0 5.5 22 455-476 39-60 (373)
261 3kb2_A SPBC2 prophage-derived 94.3 0.012 4.1E-07 56.4 1.5 20 456-475 3-22 (173)
262 3io5_A Recombination and repai 94.3 0.075 2.6E-06 57.8 7.8 120 453-579 28-173 (333)
263 3vfd_A Spastin; ATPase, microt 94.3 0.044 1.5E-06 60.6 6.1 22 454-475 148-169 (389)
264 3bgw_A DNAB-like replicative h 94.3 0.18 6E-06 57.2 11.1 25 452-476 195-219 (444)
265 3hu3_A Transitional endoplasmi 94.2 0.032 1.1E-06 64.1 5.0 20 456-475 240-259 (489)
266 4b4t_M 26S protease regulatory 94.2 0.08 2.7E-06 59.9 8.1 22 455-476 216-237 (434)
267 4b4t_K 26S protease regulatory 94.2 0.097 3.3E-06 59.1 8.8 21 456-476 208-228 (428)
268 1d2n_A N-ethylmaleimide-sensit 94.2 0.037 1.3E-06 57.7 5.0 22 455-476 65-86 (272)
269 1q3t_A Cytidylate kinase; nucl 94.1 0.015 5.3E-07 59.6 1.8 24 452-475 14-37 (236)
270 2www_A Methylmalonic aciduria 94.1 0.016 5.3E-07 63.7 1.9 24 453-476 73-96 (349)
271 2qp9_X Vacuolar protein sortin 94.1 0.069 2.4E-06 58.5 7.1 21 456-476 86-106 (355)
272 1m7g_A Adenylylsulfate kinase; 94.0 0.018 6.3E-07 57.9 2.1 25 452-476 23-47 (211)
273 4b4t_J 26S protease regulatory 94.0 0.074 2.5E-06 59.6 7.1 20 457-476 185-204 (405)
274 3n70_A Transport activator; si 93.9 0.045 1.5E-06 51.8 4.4 19 457-475 27-45 (145)
275 3lw7_A Adenylate kinase relate 93.9 0.018 6.2E-07 54.7 1.7 20 455-474 2-21 (179)
276 2p67_A LAO/AO transport system 93.8 0.0085 2.9E-07 65.4 -0.8 34 444-477 45-79 (341)
277 2ze6_A Isopentenyl transferase 93.8 0.018 6.3E-07 60.0 1.7 21 455-475 2-22 (253)
278 1np6_A Molybdopterin-guanine d 93.8 0.019 6.6E-07 56.8 1.7 22 455-476 7-28 (174)
279 2zan_A Vacuolar protein sortin 93.7 0.033 1.1E-06 63.0 3.8 22 455-476 168-189 (444)
280 1ex7_A Guanylate kinase; subst 93.6 0.018 6E-07 57.8 1.2 20 455-474 2-21 (186)
281 1vht_A Dephospho-COA kinase; s 93.6 0.023 7.9E-07 57.2 2.1 23 454-476 4-26 (218)
282 1qhx_A CPT, protein (chloramph 93.6 0.022 7.4E-07 55.2 1.7 22 454-475 3-24 (178)
283 3pvs_A Replication-associated 93.5 0.085 2.9E-06 59.8 6.7 21 456-476 52-72 (447)
284 1kht_A Adenylate kinase; phosp 93.4 0.025 8.4E-07 55.1 1.8 22 454-475 3-24 (192)
285 1q57_A DNA primase/helicase; d 93.4 0.13 4.5E-06 58.9 8.0 25 452-476 240-264 (503)
286 2wji_A Ferrous iron transport 93.4 0.024 8.3E-07 54.2 1.6 21 456-476 5-25 (165)
287 2rhm_A Putative kinase; P-loop 93.3 0.028 9.6E-07 54.9 2.1 23 453-475 4-26 (193)
288 3uk6_A RUVB-like 2; hexameric 93.3 0.15 5E-06 55.2 8.0 23 454-476 70-92 (368)
289 2p5t_B PEZT; postsegregational 93.3 0.024 8.2E-07 59.0 1.6 25 452-476 30-54 (253)
290 1gvn_B Zeta; postsegregational 93.3 0.032 1.1E-06 59.5 2.5 24 452-475 31-54 (287)
291 1ypw_A Transitional endoplasmi 93.3 0.016 5.3E-07 70.7 0.1 25 453-477 510-534 (806)
292 1uf9_A TT1252 protein; P-loop, 93.3 0.028 9.6E-07 55.4 2.0 24 453-476 7-30 (203)
293 1hqc_A RUVB; extended AAA-ATPa 93.3 0.12 4.2E-06 54.8 7.1 22 455-476 39-60 (324)
294 1via_A Shikimate kinase; struc 93.3 0.022 7.5E-07 55.3 1.1 20 456-475 6-25 (175)
295 1ega_A Protein (GTP-binding pr 93.2 0.023 7.8E-07 60.9 1.3 23 455-477 9-31 (301)
296 1ly1_A Polynucleotide kinase; 93.2 0.028 9.6E-07 54.1 1.8 21 455-475 3-23 (181)
297 2orv_A Thymidine kinase; TP4A 93.1 0.1 3.6E-06 54.1 6.0 139 452-610 17-168 (234)
298 4b4t_H 26S protease regulatory 93.1 0.2 7E-06 56.9 8.8 21 456-476 245-265 (467)
299 2gj8_A MNME, tRNA modification 93.1 0.031 1.1E-06 54.0 1.9 23 454-476 4-26 (172)
300 3cmw_A Protein RECA, recombina 93.0 0.22 7.6E-06 64.8 10.0 120 452-577 381-519 (1706)
301 1iqp_A RFCS; clamp loader, ext 93.0 0.1 3.5E-06 55.1 5.9 20 457-476 49-68 (327)
302 2wjg_A FEOB, ferrous iron tran 92.9 0.029 9.8E-07 54.3 1.4 21 456-476 9-29 (188)
303 2bjv_A PSP operon transcriptio 92.9 0.1 3.5E-06 54.1 5.6 21 456-476 31-51 (265)
304 4b4t_I 26S protease regulatory 92.9 0.17 5.6E-06 57.2 7.6 21 456-476 218-238 (437)
305 1xx6_A Thymidine kinase; NESG, 92.8 0.071 2.4E-06 53.6 4.2 144 452-613 6-163 (191)
306 2jaq_A Deoxyguanosine kinase; 92.8 0.033 1.1E-06 54.7 1.7 21 456-476 2-22 (205)
307 1sxj_C Activator 1 40 kDa subu 92.7 0.013 4.3E-07 63.6 -1.7 34 444-477 33-69 (340)
308 2zej_A Dardarin, leucine-rich 92.7 0.033 1.1E-06 54.3 1.4 20 457-476 5-24 (184)
309 3cmu_A Protein RECA, recombina 92.7 0.19 6.6E-06 66.2 8.9 25 452-476 1425-1449(2050)
310 1gtv_A TMK, thymidylate kinase 92.5 0.019 6.5E-07 57.2 -0.5 20 456-475 2-21 (214)
311 3cf2_A TER ATPase, transitiona 92.5 0.3 1E-05 59.3 9.7 21 455-475 239-259 (806)
312 3iij_A Coilin-interacting nucl 92.5 0.035 1.2E-06 54.1 1.3 22 454-475 11-32 (180)
313 3t34_A Dynamin-related protein 92.4 0.16 5.4E-06 55.5 6.6 35 443-479 25-59 (360)
314 3u61_B DNA polymerase accessor 92.3 0.13 4.5E-06 54.8 5.8 21 455-475 49-69 (324)
315 2lw1_A ABC transporter ATP-bin 92.3 0.6 2.1E-05 41.0 9.0 58 640-697 21-84 (89)
316 2iut_A DNA translocase FTSK; n 92.3 0.13 4.4E-06 60.1 5.9 21 455-475 215-235 (574)
317 1j8m_F SRP54, signal recogniti 92.3 0.038 1.3E-06 59.3 1.4 30 448-477 92-121 (297)
318 1tev_A UMP-CMP kinase; ploop, 92.3 0.044 1.5E-06 53.3 1.8 22 454-475 3-24 (196)
319 2j9r_A Thymidine kinase; TK1, 92.2 0.1 3.4E-06 53.5 4.4 144 452-613 26-183 (214)
320 3r20_A Cytidylate kinase; stru 92.2 0.042 1.4E-06 57.1 1.5 21 455-475 10-30 (233)
321 2c95_A Adenylate kinase 1; tra 92.2 0.047 1.6E-06 53.5 1.8 23 453-475 8-30 (196)
322 2vli_A Antibiotic resistance p 92.1 0.046 1.6E-06 53.0 1.7 22 454-475 5-26 (183)
323 1m2o_B GTP-binding protein SAR 92.1 0.045 1.5E-06 53.7 1.6 33 444-476 13-45 (190)
324 3ake_A Cytidylate kinase; CMP 92.1 0.044 1.5E-06 54.2 1.5 21 456-476 4-24 (208)
325 1w4r_A Thymidine kinase; type 92.1 0.034 1.2E-06 56.2 0.7 110 452-581 18-130 (195)
326 2plr_A DTMP kinase, probable t 92.0 0.053 1.8E-06 53.6 2.0 22 454-475 4-25 (213)
327 2v54_A DTMP kinase, thymidylat 92.0 0.05 1.7E-06 53.7 1.9 23 453-475 3-25 (204)
328 1nks_A Adenylate kinase; therm 91.9 0.053 1.8E-06 52.7 1.8 20 456-475 3-22 (194)
329 3trf_A Shikimate kinase, SK; a 91.9 0.051 1.7E-06 52.9 1.6 22 454-475 5-26 (185)
330 2z0h_A DTMP kinase, thymidylat 91.8 0.052 1.8E-06 53.2 1.6 20 456-475 2-21 (197)
331 1qvr_A CLPB protein; coiled co 91.7 0.06 2E-06 65.9 2.3 23 455-477 589-611 (854)
332 2wwf_A Thymidilate kinase, put 91.7 0.06 2E-06 53.5 2.0 23 453-475 9-31 (212)
333 1ojl_A Transcriptional regulat 91.6 0.12 4.3E-06 55.2 4.5 21 456-476 27-47 (304)
334 1g5t_A COB(I)alamin adenosyltr 91.6 0.58 2E-05 47.2 9.1 54 533-591 119-178 (196)
335 2qen_A Walker-type ATPase; unk 91.5 0.4 1.4E-05 50.8 8.4 21 455-475 32-52 (350)
336 1nn5_A Similar to deoxythymidy 91.5 0.064 2.2E-06 53.3 1.9 23 453-475 8-30 (215)
337 1xjc_A MOBB protein homolog; s 91.4 0.06 2.1E-06 53.1 1.6 21 455-475 5-25 (169)
338 3cmu_A Protein RECA, recombina 91.3 0.34 1.1E-05 64.1 8.8 119 452-576 1079-1216(2050)
339 3lxw_A GTPase IMAP family memb 91.3 0.072 2.5E-06 55.2 2.1 20 457-476 24-43 (247)
340 1a7j_A Phosphoribulokinase; tr 91.3 0.067 2.3E-06 57.1 1.9 23 453-475 4-26 (290)
341 1qf9_A UMP/CMP kinase, protein 90.9 0.079 2.7E-06 51.4 1.9 21 455-475 7-27 (194)
342 4ag6_A VIRB4 ATPase, type IV s 90.7 0.055 1.9E-06 59.8 0.6 24 453-476 34-57 (392)
343 2bwj_A Adenylate kinase 5; pho 90.7 0.08 2.7E-06 51.9 1.7 22 454-475 12-33 (199)
344 1f6b_A SAR1; gtpases, N-termin 90.7 0.035 1.2E-06 55.0 -0.9 33 443-476 14-47 (198)
345 1a5t_A Delta prime, HOLB; zinc 90.5 0.33 1.1E-05 52.5 6.5 22 455-476 25-46 (334)
346 1e6c_A Shikimate kinase; phosp 90.5 0.07 2.4E-06 51.1 1.1 21 455-475 3-23 (173)
347 2pbr_A DTMP kinase, thymidylat 90.4 0.086 2.9E-06 51.3 1.7 20 456-475 2-21 (195)
348 1ukz_A Uridylate kinase; trans 90.4 0.098 3.3E-06 51.8 2.1 23 453-475 14-36 (203)
349 3a4m_A L-seryl-tRNA(SEC) kinas 90.2 0.095 3.2E-06 54.7 1.9 22 454-475 4-25 (260)
350 1zd8_A GTP:AMP phosphotransfer 90.2 0.089 3.1E-06 53.3 1.6 22 454-475 7-28 (227)
351 3fb4_A Adenylate kinase; psych 90.1 0.092 3.1E-06 52.5 1.6 20 456-475 2-21 (216)
352 3e2i_A Thymidine kinase; Zn-bi 90.1 0.57 1.9E-05 48.1 7.4 142 452-611 26-181 (219)
353 1aky_A Adenylate kinase; ATP:A 90.1 0.097 3.3E-06 52.7 1.7 23 453-475 3-25 (220)
354 2qtf_A Protein HFLX, GTP-bindi 90.0 0.088 3E-06 58.1 1.5 23 455-477 180-202 (364)
355 1zak_A Adenylate kinase; ATP:A 90.0 0.089 3E-06 53.1 1.4 21 455-475 6-26 (222)
356 2pt5_A Shikimate kinase, SK; a 89.8 0.1 3.5E-06 49.8 1.7 20 456-475 2-21 (168)
357 2a5y_B CED-4; apoptosis; HET: 89.8 0.61 2.1E-05 53.9 8.5 22 454-475 152-173 (549)
358 3k53_A Ferrous iron transport 89.7 0.091 3.1E-06 55.0 1.2 22 456-477 5-26 (271)
359 1mky_A Probable GTP-binding pr 89.7 0.092 3.1E-06 59.2 1.3 22 456-477 182-203 (439)
360 1nz9_A Transcription antitermi 89.7 0.88 3E-05 36.5 6.8 46 796-841 4-56 (58)
361 2ga8_A Hypothetical 39.9 kDa p 89.6 0.094 3.2E-06 57.8 1.3 20 457-476 27-46 (359)
362 2iyv_A Shikimate kinase, SK; t 89.6 0.09 3.1E-06 51.1 1.1 21 455-475 3-23 (184)
363 1moz_A ARL1, ADP-ribosylation 89.6 0.1 3.4E-06 50.1 1.3 20 456-475 20-39 (183)
364 3dl0_A Adenylate kinase; phosp 89.5 0.11 3.7E-06 52.0 1.6 20 456-475 2-21 (216)
365 2cdn_A Adenylate kinase; phosp 89.5 0.12 4E-06 51.2 1.8 24 452-475 18-41 (201)
366 3te6_A Regulatory protein SIR3 89.3 0.33 1.1E-05 52.6 5.3 23 453-475 44-66 (318)
367 2xb4_A Adenylate kinase; ATP-b 89.3 0.12 4E-06 52.5 1.7 20 456-475 2-21 (223)
368 2orw_A Thymidine kinase; TMTK, 89.2 0.13 4.6E-06 50.9 2.0 21 454-474 3-23 (184)
369 1uj2_A Uridine-cytidine kinase 89.2 0.13 4.5E-06 53.1 2.0 22 454-475 22-43 (252)
370 2eqb_B RAB guanine nucleotide 89.0 8.9 0.0003 34.2 13.2 71 643-720 7-77 (97)
371 2qag_A Septin-2, protein NEDD5 88.7 0.11 3.7E-06 57.2 1.0 29 442-475 30-58 (361)
372 1fzq_A ADP-ribosylation factor 88.7 0.13 4.3E-06 49.9 1.4 21 456-476 18-38 (181)
373 2ged_A SR-beta, signal recogni 88.6 0.13 4.5E-06 49.9 1.4 21 456-476 50-70 (193)
374 1ltq_A Polynucleotide kinase; 88.5 0.15 5E-06 53.8 1.8 21 455-475 3-23 (301)
375 1zuh_A Shikimate kinase; alpha 88.4 0.14 4.8E-06 49.0 1.5 21 455-475 8-28 (168)
376 2f6r_A COA synthase, bifunctio 88.3 0.17 5.7E-06 53.6 2.1 22 454-475 75-96 (281)
377 2grj_A Dephospho-COA kinase; T 88.2 0.15 5.2E-06 51.0 1.6 23 453-475 11-33 (192)
378 2qmh_A HPR kinase/phosphorylas 88.1 0.3 1E-05 49.6 3.7 33 443-475 23-55 (205)
379 3ice_A Transcription terminati 88.1 0.11 3.7E-06 58.1 0.4 31 447-477 166-197 (422)
380 4edh_A DTMP kinase, thymidylat 87.8 0.19 6.4E-06 51.2 2.0 23 453-475 5-27 (213)
381 1z2a_A RAS-related protein RAB 87.8 0.16 5.4E-06 47.6 1.4 19 457-475 8-26 (168)
382 2ce2_X GTPase HRAS; signaling 87.7 0.16 5.6E-06 47.1 1.4 19 457-475 6-24 (166)
383 2dyk_A GTP-binding protein; GT 87.7 0.16 5.6E-06 47.2 1.4 19 457-475 4-22 (161)
384 1r6b_X CLPA protein; AAA+, N-t 87.7 0.22 7.7E-06 59.8 2.9 22 455-476 208-229 (758)
385 3tlx_A Adenylate kinase 2; str 87.6 0.2 6.8E-06 51.7 2.1 22 454-475 29-50 (243)
386 3v9p_A DTMP kinase, thymidylat 87.5 0.2 6.7E-06 51.7 1.9 23 453-475 24-46 (227)
387 1e4v_A Adenylate kinase; trans 87.3 0.19 6.3E-06 50.4 1.6 19 457-475 3-21 (214)
388 1ek0_A Protein (GTP-binding pr 87.2 0.18 6.2E-06 47.2 1.4 19 457-475 6-24 (170)
389 1kao_A RAP2A; GTP-binding prot 87.2 0.18 6.3E-06 46.9 1.4 19 457-475 6-24 (167)
390 1u8z_A RAS-related protein RAL 87.1 0.19 6.4E-06 46.9 1.4 19 457-475 7-25 (168)
391 1z0j_A RAB-22, RAS-related pro 87.1 0.19 6.4E-06 47.2 1.4 20 457-476 9-28 (170)
392 1ky3_A GTP-binding protein YPT 87.0 0.19 6.4E-06 47.8 1.4 19 457-475 11-29 (182)
393 3tw8_B RAS-related protein RAB 87.0 0.19 6.5E-06 47.7 1.5 20 457-476 12-31 (181)
394 3q72_A GTP-binding protein RAD 87.0 0.19 6.5E-06 47.2 1.4 19 457-475 5-23 (166)
395 2erx_A GTP-binding protein DI- 86.9 0.19 6.6E-06 47.1 1.4 19 457-475 6-24 (172)
396 3zvl_A Bifunctional polynucleo 86.9 0.22 7.4E-06 55.8 2.0 24 452-475 256-279 (416)
397 3lv8_A DTMP kinase, thymidylat 86.8 0.22 7.5E-06 51.6 1.9 23 453-475 26-48 (236)
398 1z08_A RAS-related protein RAB 86.8 0.2 6.8E-06 47.1 1.5 19 457-475 9-27 (170)
399 1g16_A RAS-related protein SEC 86.8 0.2 6.7E-06 47.1 1.4 19 457-475 6-24 (170)
400 1sky_E F1-ATPase, F1-ATP synth 86.8 0.64 2.2E-05 53.0 5.8 24 453-476 150-173 (473)
401 1z6t_A APAF-1, apoptotic prote 86.7 0.82 2.8E-05 52.8 6.9 23 453-475 146-168 (591)
402 1c1y_A RAS-related protein RAP 86.7 0.2 6.9E-06 46.8 1.4 19 457-475 6-24 (167)
403 3q85_A GTP-binding protein REM 86.7 0.2 7E-06 47.1 1.4 19 457-475 5-23 (169)
404 3pxi_A Negative regulator of g 86.6 0.49 1.7E-05 56.9 5.1 22 456-477 523-544 (758)
405 1wms_A RAB-9, RAB9, RAS-relate 86.6 0.2 6.9E-06 47.5 1.4 19 457-475 10-28 (177)
406 3d3q_A TRNA delta(2)-isopenten 86.6 0.21 7.2E-06 54.6 1.7 21 455-475 8-28 (340)
407 4tmk_A Protein (thymidylate ki 86.6 0.23 8E-06 50.6 1.9 23 453-475 2-24 (213)
408 3exa_A TRNA delta(2)-isopenten 86.6 0.23 8E-06 53.8 2.0 22 454-475 3-24 (322)
409 1p5z_B DCK, deoxycytidine kina 86.6 0.27 9.3E-06 51.0 2.4 24 452-475 22-45 (263)
410 1svi_A GTP-binding protein YSX 86.5 0.2 6.9E-06 48.5 1.4 21 456-476 25-45 (195)
411 3be4_A Adenylate kinase; malar 86.5 0.22 7.5E-06 50.1 1.6 22 454-475 5-26 (217)
412 3tqf_A HPR(Ser) kinase; transf 86.4 0.35 1.2E-05 48.1 3.0 32 443-474 5-36 (181)
413 3pqc_A Probable GTP-binding pr 86.4 0.21 7.1E-06 48.1 1.4 20 456-475 25-44 (195)
414 2nzj_A GTP-binding protein REM 86.4 0.21 7.3E-06 47.2 1.4 20 457-476 7-26 (175)
415 1upt_A ARL1, ADP-ribosylation 86.4 0.21 7.3E-06 46.9 1.4 20 456-475 9-28 (171)
416 2cxx_A Probable GTP-binding pr 86.2 0.22 7.4E-06 47.9 1.4 19 457-475 4-22 (190)
417 2lkc_A Translation initiation 86.2 0.27 9.1E-06 46.7 2.0 22 455-476 9-30 (178)
418 2ocp_A DGK, deoxyguanosine kin 86.2 0.25 8.6E-06 50.5 1.9 22 454-475 2-23 (241)
419 3crm_A TRNA delta(2)-isopenten 85.9 0.24 8.4E-06 53.8 1.7 21 455-475 6-26 (323)
420 2fn4_A P23, RAS-related protei 85.8 0.23 8E-06 47.0 1.4 20 457-476 12-31 (181)
421 2ohf_A Protein OLA1, GTP-bindi 85.7 0.23 7.7E-06 55.5 1.4 24 453-476 21-44 (396)
422 4dsu_A GTPase KRAS, isoform 2B 85.6 0.24 8.4E-06 47.4 1.4 19 457-475 7-25 (189)
423 2y8e_A RAB-protein 6, GH09086P 85.6 0.25 8.4E-06 46.8 1.4 19 457-475 17-35 (179)
424 2gno_A DNA polymerase III, gam 85.6 0.61 2.1E-05 50.0 4.6 21 455-475 19-39 (305)
425 2h92_A Cytidylate kinase; ross 85.6 0.23 7.8E-06 49.7 1.2 21 455-475 4-24 (219)
426 3umf_A Adenylate kinase; rossm 85.5 0.3 1E-05 50.0 2.1 24 452-475 27-50 (217)
427 3foz_A TRNA delta(2)-isopenten 85.5 0.27 9.4E-06 53.1 1.8 22 454-475 10-31 (316)
428 1r2q_A RAS-related protein RAB 85.5 0.25 8.7E-06 46.2 1.4 19 457-475 9-27 (170)
429 1ak2_A Adenylate kinase isoenz 85.5 0.28 9.5E-06 49.9 1.8 24 452-475 14-37 (233)
430 3b1v_A Ferrous iron uptake tra 85.5 0.24 8.1E-06 52.3 1.3 21 456-476 5-25 (272)
431 1r6b_X CLPA protein; AAA+, N-t 85.3 0.51 1.7E-05 56.7 4.3 22 456-477 490-511 (758)
432 2a9k_A RAS-related protein RAL 85.3 0.26 8.8E-06 47.0 1.4 19 457-475 21-39 (187)
433 3ihw_A Centg3; RAS, centaurin, 85.3 0.26 8.9E-06 48.0 1.5 19 457-475 23-41 (184)
434 3bc1_A RAS-related protein RAB 85.3 0.26 8.9E-06 47.2 1.4 19 457-475 14-32 (195)
435 2oil_A CATX-8, RAS-related pro 85.3 0.26 8.8E-06 47.8 1.4 20 457-476 28-47 (193)
436 3cbq_A GTP-binding protein REM 85.2 0.28 9.5E-06 48.3 1.6 19 457-475 26-44 (195)
437 1r8s_A ADP-ribosylation factor 85.2 0.27 9.1E-06 46.0 1.4 19 457-475 3-21 (164)
438 2bme_A RAB4A, RAS-related prot 85.1 0.27 9.1E-06 47.2 1.4 19 457-475 13-31 (186)
439 1nrj_B SR-beta, signal recogni 85.1 0.27 9.1E-06 48.8 1.4 20 456-475 14-33 (218)
440 1z0f_A RAB14, member RAS oncog 85.0 0.27 9.3E-06 46.5 1.4 20 457-476 18-37 (179)
441 4dcu_A GTP-binding protein ENG 84.8 0.62 2.1E-05 52.6 4.4 21 456-476 25-45 (456)
442 1m7b_A RND3/RHOE small GTP-bin 84.7 0.28 9.7E-06 47.3 1.4 20 457-476 10-29 (184)
443 2hxs_A RAB-26, RAS-related pro 84.7 0.29 9.9E-06 46.4 1.4 20 457-476 9-28 (178)
444 3kkq_A RAS-related protein M-R 84.6 0.29 1E-05 46.8 1.4 19 457-475 21-39 (183)
445 3ld9_A DTMP kinase, thymidylat 84.5 0.36 1.2E-05 49.7 2.1 24 452-475 19-42 (223)
446 3con_A GTPase NRAS; structural 84.5 0.29 1E-05 47.2 1.4 19 457-475 24-42 (190)
447 2bov_A RAla, RAS-related prote 84.4 0.3 1E-05 47.6 1.4 19 457-475 17-35 (206)
448 2efe_B Small GTP-binding prote 84.4 0.3 1E-05 46.4 1.5 19 457-475 15-33 (181)
449 3clv_A RAB5 protein, putative; 84.4 0.3 1E-05 47.0 1.4 20 457-476 10-29 (208)
450 3t1o_A Gliding protein MGLA; G 84.4 0.3 1E-05 47.0 1.4 19 457-475 17-35 (198)
451 2g6b_A RAS-related protein RAB 84.2 0.31 1.1E-05 46.3 1.4 19 457-475 13-31 (180)
452 3tmk_A Thymidylate kinase; pho 84.2 0.35 1.2E-05 49.4 1.8 23 453-475 4-26 (216)
453 2wsm_A Hydrogenase expression/ 84.1 0.35 1.2E-05 48.1 1.8 21 455-475 31-51 (221)
454 3t5g_A GTP-binding protein RHE 84.1 0.32 1.1E-05 46.5 1.4 19 457-475 9-27 (181)
455 1vg8_A RAS-related protein RAB 84.0 0.32 1.1E-05 47.5 1.4 19 457-475 11-29 (207)
456 3tkl_A RAS-related protein RAB 83.9 0.33 1.1E-05 46.9 1.4 19 457-475 19-37 (196)
457 2fu5_C RAS-related protein RAB 83.8 0.34 1.2E-05 46.3 1.5 19 457-475 11-29 (183)
458 1ksh_A ARF-like protein 2; sma 83.8 0.33 1.1E-05 46.7 1.4 21 456-476 20-40 (186)
459 2h57_A ADP-ribosylation factor 83.8 0.35 1.2E-05 46.9 1.6 20 457-476 24-43 (190)
460 1mh1_A RAC1; GTP-binding, GTPa 83.8 0.33 1.1E-05 46.3 1.4 19 457-475 8-26 (186)
461 2gf0_A GTP-binding protein DI- 83.5 0.34 1.2E-05 46.9 1.4 19 457-475 11-29 (199)
462 2fg5_A RAB-22B, RAS-related pr 83.3 0.35 1.2E-05 47.1 1.4 19 457-475 26-44 (192)
463 2o52_A RAS-related protein RAB 83.2 0.36 1.2E-05 47.5 1.4 19 457-475 28-46 (200)
464 2gf9_A RAS-related protein RAB 83.0 0.37 1.3E-05 46.6 1.4 20 457-476 25-44 (189)
465 3a8t_A Adenylate isopentenyltr 83.0 0.42 1.5E-05 52.2 2.0 23 453-475 39-61 (339)
466 2ew1_A RAS-related protein RAB 82.9 0.37 1.3E-05 47.8 1.4 19 457-475 29-47 (201)
467 4djt_A GTP-binding nuclear pro 82.8 0.41 1.4E-05 47.4 1.7 20 457-476 14-33 (218)
468 2il1_A RAB12; G-protein, GDP, 82.7 0.39 1.3E-05 46.8 1.4 20 457-476 29-48 (192)
469 3l0i_B RAS-related protein RAB 82.7 0.45 1.5E-05 46.6 1.9 19 457-475 36-54 (199)
470 3dz8_A RAS-related protein RAB 82.6 0.39 1.3E-05 46.6 1.4 20 457-476 26-45 (191)
471 2a5j_A RAS-related protein RAB 82.6 0.39 1.3E-05 46.6 1.4 19 457-475 24-42 (191)
472 3bwd_D RAC-like GTP-binding pr 82.6 0.4 1.4E-05 45.6 1.4 19 457-475 11-29 (182)
473 1zj6_A ADP-ribosylation factor 82.5 0.39 1.3E-05 46.3 1.4 20 456-475 18-37 (187)
474 2r62_A Cell division protease 82.3 0.21 7.1E-06 51.6 -0.8 20 457-476 47-66 (268)
475 1x3s_A RAS-related protein RAB 82.2 0.42 1.4E-05 46.0 1.4 19 457-475 18-36 (195)
476 2bcg_Y Protein YP2, GTP-bindin 82.2 0.41 1.4E-05 47.0 1.4 19 457-475 11-29 (206)
477 1zbd_A Rabphilin-3A; G protein 82.1 0.42 1.4E-05 46.7 1.4 19 457-475 11-29 (203)
478 1z06_A RAS-related protein RAB 82.1 0.42 1.4E-05 46.2 1.4 19 457-475 23-41 (189)
479 3oes_A GTPase rhebl1; small GT 82.1 0.42 1.4E-05 46.9 1.4 20 457-476 27-46 (201)
480 4hlc_A DTMP kinase, thymidylat 82.1 0.5 1.7E-05 47.7 2.0 22 454-475 2-23 (205)
481 4bas_A ADP-ribosylation factor 82.0 0.43 1.5E-05 46.2 1.5 21 456-476 19-39 (199)
482 3reg_A RHO-like small GTPase; 82.0 0.43 1.5E-05 46.4 1.4 20 457-476 26-45 (194)
483 1zd9_A ADP-ribosylation factor 81.9 0.43 1.5E-05 46.2 1.4 19 457-475 25-43 (188)
484 2atv_A RERG, RAS-like estrogen 81.8 0.44 1.5E-05 46.5 1.4 20 457-476 31-50 (196)
485 2h17_A ADP-ribosylation factor 81.8 0.41 1.4E-05 46.1 1.1 20 457-476 24-43 (181)
486 2fv8_A H6, RHO-related GTP-bin 81.8 0.35 1.2E-05 47.8 0.7 34 443-476 13-47 (207)
487 2b6h_A ADP-ribosylation factor 81.8 0.44 1.5E-05 46.6 1.4 20 456-475 31-50 (192)
488 3sr0_A Adenylate kinase; phosp 81.7 0.45 1.6E-05 48.1 1.5 20 456-475 2-21 (206)
489 2p5s_A RAS and EF-hand domain 81.7 0.44 1.5E-05 46.6 1.4 20 456-475 30-49 (199)
490 2x77_A ADP-ribosylation factor 81.6 0.44 1.5E-05 46.0 1.3 19 457-475 25-43 (189)
491 2hf9_A Probable hydrogenase ni 81.6 0.47 1.6E-05 47.3 1.6 21 455-475 39-59 (226)
492 1gwn_A RHO-related GTP-binding 81.3 0.46 1.6E-05 47.2 1.4 20 457-476 31-50 (205)
493 2q3h_A RAS homolog gene family 81.3 0.47 1.6E-05 46.3 1.4 20 457-476 23-42 (201)
494 2xtp_A GTPase IMAP family memb 81.3 0.46 1.6E-05 48.9 1.4 21 456-476 24-44 (260)
495 3eph_A TRNA isopentenyltransfe 81.2 0.51 1.8E-05 52.8 1.8 21 455-475 3-23 (409)
496 3cph_A RAS-related protein SEC 81.1 0.48 1.6E-05 46.5 1.4 19 457-475 23-41 (213)
497 3llu_A RAS-related GTP-binding 81.0 0.48 1.7E-05 46.3 1.4 18 457-474 23-40 (196)
498 3t5d_A Septin-7; GTP-binding p 80.9 0.47 1.6E-05 49.6 1.4 19 457-475 11-29 (274)
499 2j1l_A RHO-related GTP-binding 80.9 0.48 1.6E-05 47.1 1.4 19 457-475 37-55 (214)
500 2dby_A GTP-binding protein; GD 80.9 0.46 1.6E-05 52.5 1.3 20 457-476 4-23 (368)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=2.1e-67 Score=636.14 Aligned_cols=506 Identities=20% Similarity=0.207 Sum_probs=435.3
Q ss_pred hhhhhhhHhhhhhcChHHH--------HHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003163 44 DKKSRVVYESLRVLEWDKL--------CHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115 (843)
Q Consensus 44 ~~~~~~~~~~l~~Le~~~i--------~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~ 115 (843)
+.-+.|+..|++.|||.+. +-.+..+|.|++|+++++.|+..|..+.++++++++.+.++..+.... ..+
T Consensus 264 ~~~m~ld~~t~~~LEl~~~~~~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~l--~~~ 341 (800)
T 1wb9_A 264 QDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGL--QPV 341 (800)
T ss_dssp GGBCEECHHHHHHTTSSSCTTSCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHHH--HHH
T ss_pred CCEEEecHHHHHhccCcccCCCCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3446699999999999998 789999999999999999975556799999999999999987722211 234
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhh
Q 003163 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (843)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~ 195 (843)
+.++. |+++.+.|+..| .+++.||..++.+|..+..+++++... ..|.|..+...+..+.++.+.|.+
T Consensus 342 L~~~~--Dler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~ 409 (800)
T 1wb9_A 342 LRQVG--DLERILARLALR-TARPRDLARMRHAFQQLPELRAQLETV---------DSAPVQALREKMGEFAELRDLLER 409 (800)
T ss_dssp HHTTC--SHHHHHHHHHHT-CCCHHHHHHHHHHHTTHHHHHHHHHSC---------CCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCc--cHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHH
Confidence 66776 489999999887 899999999999999999988766321 235677888888999999999999
Q ss_pred hcCCC--------CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCE---EEEEecCCCc-cc
Q 003163 196 VVDED--------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SF 263 (843)
Q Consensus 196 ~id~~--------G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~k-~~ 263 (843)
+||++ |.|+|++|++|+.||+.++..++.+.+.+++.... .....++++.+| |||+|+.+++ ++
T Consensus 410 ~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~----~~~~~l~i~~~~~~gy~i~V~~~~~~~v 485 (800)
T 1wb9_A 410 AIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER----TGLDTLKVGFNAVHGYYIQISRGQSHLA 485 (800)
T ss_dssp HBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCTTCEEEEETTTEEEEEEEHHHHTTS
T ss_pred HhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCceEEEecCcceEEEEEeccccccC
Confidence 99988 89999999999999999999888888766654322 122345666666 9999999999 88
Q ss_pred c-eEEe--cccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003163 264 K-GLLL--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 340 (843)
Q Consensus 264 ~-giv~--~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~ 340 (843)
| |++| +.+|++.|++|. ++++|+++.+++.++..++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|.+
T Consensus 486 p~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~ 564 (800)
T 1wb9_A 486 PINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT 564 (800)
T ss_dssp CTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 8888 458899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCccc
Q 003163 341 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 420 (843)
Q Consensus 341 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (843)
+++|+|.++. +..+.++++|||++...
T Consensus 565 ~~~~~P~~~~----------------------~~~i~i~~~rHP~le~~------------------------------- 591 (800)
T 1wb9_A 565 LNYTCPTFID----------------------KPGIRITEGRHPVVEQV------------------------------- 591 (800)
T ss_dssp TTCBCCEECS----------------------SSCEEEEEECCTTHHHH-------------------------------
T ss_pred CCCcccEECC----------------------CCCEEEEeccccEEEcc-------------------------------
Confidence 9999999973 34599999999999531
Q ss_pred CCCccCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHH
Q 003163 421 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 500 (843)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~ 500 (843)
.++.+|+++++|+.+|++++|+||||||||||||+|+++.++++.|.++|+ ....++++++
T Consensus 592 ------------------~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa-~~~~i~~~~~ 652 (800)
T 1wb9_A 592 ------------------LNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QKVEIGPIDR 652 (800)
T ss_dssp ------------------CSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCCE
T ss_pred ------------------CCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch-hcccceeHHH
Confidence 134689999999977899999999999999999999999999999999998 5677888888
Q ss_pred HHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEccchh
Q 003163 501 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGE 579 (843)
Q Consensus 501 i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitTHd~e 579 (843)
++..++..+++..++++|+.+|.++..++..+.+|+||||||||+||||.++..+++++++.+.+ .|++ +|++|||.+
T Consensus 653 i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~e 731 (800)
T 1wb9_A 653 IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFE 731 (800)
T ss_dssp EEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGG
T ss_pred HHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999988 4887 999999999
Q ss_pred HHhhhccccceeeeEEEEecc--cceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 580 LKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 580 l~~~a~~~~~v~ng~v~fd~~--~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
+..++++...+.|++|.++.. ++.|+|++..|.+++|||+++|+++|+|++|+++|++++..
T Consensus 732 l~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~ 795 (800)
T 1wb9_A 732 LTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRE 795 (800)
T ss_dssp GGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999874 48999999999999999999999999999999999987653
No 2
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=5e-61 Score=577.70 Aligned_cols=490 Identities=23% Similarity=0.267 Sum_probs=420.5
Q ss_pred hhhhhhhHhhhhhcChHH------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HHcCCCCCC
Q 003163 44 DKKSRVVYESLRVLEWDK------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QKHGSCSLD 115 (843)
Q Consensus 44 ~~~~~~~~~~l~~Le~~~------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~--~~~~~~~~~ 115 (843)
+.-+.|+..|++.||+.+ .+-.+..+|.|++|+++++.|+..|..+.++++++++.+.++... +... ....
T Consensus 247 ~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~-l~~~ 325 (765)
T 1ewq_A 247 GAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREG-VRRL 325 (765)
T ss_dssp GGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHH-HHHH
T ss_pred CCeEEecHHHHHhCcCccCCCccchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence 334568999999999997 778888999999999999997666679999999999999999873 1111 1234
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHhh
Q 003163 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (843)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~I~~ 195 (843)
+.++. |+++.+.|+..| .+++.||..++.+|..+..++.++. +...+.+++++.+.|.+
T Consensus 326 L~~~~--Dler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~------------------l~~~l~~~~~l~~~i~~ 384 (765)
T 1ewq_A 326 LYRLA--DLERLATRLELG-RASPKDLGALRRSLQILPELRALLG------------------EEVGLPDLSPLKEELEA 384 (765)
T ss_dssp HTTCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHC------------------TTSCCCCCHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHH------------------HHhccccHHHHHHHHHH
Confidence 67776 488999998876 7999999999999999888765442 12344566788889999
Q ss_pred hcCCC--------CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCE---EEEEecCCCc-cc
Q 003163 196 VVDED--------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SF 263 (843)
Q Consensus 196 ~id~~--------G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR---~vipVk~~~k-~~ 263 (843)
+|+++ |.|+|++|++|+.+|+.++..++.+.+..+++..... ...++++.++ |+|+|+..++ ++
T Consensus 385 ~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~----~~~l~i~~~~~~gy~i~v~~~~~~~v 460 (765)
T 1ewq_A 385 ALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTG----IPTLKVGYNAVFGYYLEVTRPYYERV 460 (765)
T ss_dssp HBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CTTCEEEEETTTEEEEEEEGGGGGGS
T ss_pred HhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCceEEEeccceeEEEEeehHhhhcC
Confidence 99876 7899999999999999999998888888777655432 2235555555 9999999999 99
Q ss_pred ce-EEe--cccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003163 264 KG-LLL--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 340 (843)
Q Consensus 264 ~g-iv~--~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~a~~ 340 (843)
|| ++| +.+|++.|++|. ++++|+++.+++.++..++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|..
T Consensus 461 p~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~ 539 (765)
T 1ewq_A 461 PKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVR 539 (765)
T ss_dssp CTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 88 777 458889999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCCccc
Q 003163 341 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 420 (843)
Q Consensus 341 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (843)
+++|+|.+. ..+.+.++|||++..
T Consensus 540 ~~~~~P~~~------------------------~~i~i~~~rHP~le~-------------------------------- 563 (765)
T 1ewq_A 540 YGYVRPRFG------------------------DRLQIRAGRHPVVER-------------------------------- 563 (765)
T ss_dssp HTCBCCEES------------------------SSEEEEEECCTTGGG--------------------------------
T ss_pred CCceeeccC------------------------CcEEEEEeECceEcc--------------------------------
Confidence 999999982 148999999999841
Q ss_pred CCCccCCCCCchhhhhhccCCccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHH
Q 003163 421 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 500 (843)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~ 500 (843)
++.+|+++++|+ |++++|+||||||||||||+|+++.++++.|.++|+ ....++++++
T Consensus 564 -------------------~~~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~ 621 (765)
T 1ewq_A 564 -------------------RTEFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG 621 (765)
T ss_dssp -------------------TSCCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE
T ss_pred -------------------CCceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH
Confidence 246899999999 899999999999999999999999989999999997 6677888888
Q ss_pred HHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 501 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 501 i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
++..+++.+++..++|+|+.++..+..++..+.+|+|+||||||+||++.++.++++++++.+.+.|++ +|++|||.++
T Consensus 622 i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~-vl~~TH~~~l 700 (765)
T 1ewq_A 622 IYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY-TLFATHYFEL 700 (765)
T ss_dssp EEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEECCCHHH
T ss_pred hhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE-EEEEeCCHHH
Confidence 999999999999999999999999999988899999999999999999999888877889998888887 9999999999
Q ss_pred HhhhccccceeeeEEEEecc--cceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 581 KTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 581 ~~~a~~~~~v~ng~v~fd~~--~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
..++ ...+.|++|.++.. ++.|+|++..|.+++|||+++|+++|+|++|+++|+.++.+
T Consensus 701 ~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~ 761 (765)
T 1ewq_A 701 TALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQA 761 (765)
T ss_dssp HTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9887 78899999999875 48899999999999999999999999999999999987653
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.2e-58 Score=564.61 Aligned_cols=510 Identities=23% Similarity=0.267 Sum_probs=398.6
Q ss_pred hhhhhHhhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHHcCC
Q 003163 46 KSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE----MQKHGS 111 (843)
Q Consensus 46 ~~~~~~~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~----~~~~~~ 111 (843)
-+.|+..|++-||.- .++. +-.+|.|++|+++++.|+..|..+.+.++++++.+.++.. +...
T Consensus 318 ~m~LD~~T~rnLEL~~~~~~~~~~gSLl~-~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~-- 394 (918)
T 3thx_B 318 FMTINGTTLRNLEILQNQTDMKTKGSLLW-VLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQ-- 394 (918)
T ss_dssp BCEECHHHHHHTTSSSCTTTCSSTTSHHH-HHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHH--
T ss_pred EEEECHHHHHhcCCcccCCCCCCCCcHHH-HHhhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHH--
Confidence 456888888888852 3444 4489999999999999866668999999999999887641 1110
Q ss_pred CCCCCCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHH
Q 003163 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSE-TLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLI 190 (843)
Q Consensus 112 ~~~~~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~-~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~ 190 (843)
..-.+.++. |+++.+.|+..| ..+|.||..+...|..+. .++..+...... ..-+.|..+...++.+....
T Consensus 395 l~~~L~~i~--DleRll~ri~~~-~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~-----~~~~lL~~~~~~~~~~~~~~ 466 (918)
T 3thx_B 395 IENHLRKLP--DIERGLCSIYHK-KCSTQEFFLIVKTLYHLKSEFQAIIPAVNSH-----IQSDLLRTVILEIPELLSPV 466 (918)
T ss_dssp HHHTTTTCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHTHHHHHTGGG
T ss_pred HHHHHccCc--cHHHHHHHhccC-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccCHHHHHHHHhhhhhHHHH
Confidence 011266666 488889988765 579999999999888665 443332211100 01122333333332111112
Q ss_pred HHHhhhcCCC-------Cc-ccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeCCEEEEEecCCCc
Q 003163 191 KSIMQVVDED-------GS-IKD-SASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL 261 (843)
Q Consensus 191 ~~I~~~id~~-------G~-v~D-~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vt~r~gR~vipVk~~~k 261 (843)
..+...|+++ |. +.+ ...|+|+.+|++++.++.++++.++++-..... .....++++++||+|+|+.+++
T Consensus 467 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~-~~~~~~~~~g~~y~iev~~~~~ 545 (918)
T 3thx_B 467 EHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKN-PSAQYVTVSGQEFMIEIKNSAV 545 (918)
T ss_dssp HHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCCEEETTEEEEEEEETTSG
T ss_pred HHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccceeEeecCCEEEEEEcHHHH
Confidence 2333333321 22 222 136999999999999999999999876433221 2345689999999999999999
Q ss_pred -ccceEEe--cccCcee-EEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 262 -SFKGLLL--SSSGIGS-VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 337 (843)
Q Consensus 262 -~~~giv~--~~sg~t~-~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~~ 337 (843)
++||.+| +++|++. |++| +++++|+++.+++.+....+++++.++...+..+.+.|..+.+++++||+++|+|.+
T Consensus 546 ~~vp~~~~~~~~~~~~~rf~tp-el~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~ 624 (918)
T 3thx_B 546 SCIPTDWVKVGSTKAVSRFHSP-FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKV 624 (918)
T ss_dssp GGSCSSCEEEEECSSEEEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEEecCCeeEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998887 6688886 5555 599999999999988888888899999999999999999999999999999999999
Q ss_pred HHhcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhcCCC
Q 003163 338 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGN 417 (843)
Q Consensus 338 a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (843)
|...+||+|.++. +..+.++++|||++.....
T Consensus 625 a~~~~~~~P~~~~----------------------~~~i~i~~~rHP~le~~~~-------------------------- 656 (918)
T 3thx_B 625 AKQGDYCRPTVQE----------------------ERKIVIKNGRHPVIDVLLG-------------------------- 656 (918)
T ss_dssp HTSSSCBCCEEES----------------------SCEEEEEEECCHHHHHHTC--------------------------
T ss_pred HhcCCCcCCcccC----------------------CCcEEEEeccchhhhhhhc--------------------------
Confidence 9999999999973 3469999999999853210
Q ss_pred cccCCCccCCCCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccc
Q 003163 418 AARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 496 (843)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~ 496 (843)
.++.+|+++++|+ .+|++++|+||||||||||||+|+++.+++|.|.++|+ ....++
T Consensus 657 ---------------------~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa-~~~~i~ 714 (918)
T 3thx_B 657 ---------------------EQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPA-EEATIG 714 (918)
T ss_dssp ---------------------SCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSS-SEEEEE
T ss_pred ---------------------cCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccc-hhhhhh
Confidence 1357899999999 78999999999999999999999999999999999998 667788
Q ss_pred hHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEEEEc
Q 003163 497 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATT 575 (843)
Q Consensus 497 ~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vlitT 575 (843)
++++++..+|..+++..++|+||++|+++..++..+++|+||||||||+||||.++.++++++++.+.+ .|++ +|++|
T Consensus 715 ~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vT 793 (918)
T 3thx_B 715 IVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVT 793 (918)
T ss_dssp CCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred HHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEe
Confidence 888999999999999999999999999999999999999999999999999999999999899999865 5887 99999
Q ss_pred cchhHHhhhccccc-eeeeEEEEe----------------cccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHH
Q 003163 576 HHGELKTLKYSNDF-FENACMEFD----------------EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 638 (843)
Q Consensus 576 Hd~el~~~a~~~~~-v~ng~v~fd----------------~~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~ 638 (843)
||+++..++++... +.|++|.|. .+++.|+|++..|++++|||+++|+++|+|++|+++|+..
T Consensus 794 H~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~ 873 (918)
T 3thx_B 794 HYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHK 873 (918)
T ss_dssp SCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999998875 999999984 2468999999999999999999999999999999999985
Q ss_pred H
Q 003163 639 Y 639 (843)
Q Consensus 639 ~ 639 (843)
+
T Consensus 874 ~ 874 (918)
T 3thx_B 874 S 874 (918)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=4.4e-57 Score=552.22 Aligned_cols=517 Identities=20% Similarity=0.227 Sum_probs=412.0
Q ss_pred hhhhhHhhhhhcChH-----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH---HHcCC
Q 003163 46 KSRVVYESLRVLEWD-----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM---QKHGS 111 (843)
Q Consensus 46 ~~~~~~~~l~~Le~~-----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~---~~~~~ 111 (843)
-+.|+..|++.||.- .++..| .+|.|++|+++++.|+..|..+.+.+++|++-+.++..- ...-.
T Consensus 299 ~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~ 377 (934)
T 3thx_A 299 YMKLDIAAVRALNLFQGSVEDTTGSQSLAALL-NKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQ 377 (934)
T ss_dssp BCEECHHHHHHTTSCC---------CCHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred eEEeCHHHHhhccccccCCCCCCCCCcHHHHh-ccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 356888888888852 233433 789999999999998666679999999999999887642 11100
Q ss_pred CCCCCCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--ccccHHHHHHhcccchHH
Q 003163 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI--RFMPLTQMIMQLFVNRSL 189 (843)
Q Consensus 112 ~~~~~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~--~~~~L~~l~~~l~~~~~l 189 (843)
...+.++. |+++.+.|+..| ..++.|+..++.+|..+..++..+..+-........ .+.++.+ .+..+..+
T Consensus 378 -~~~L~~i~--DleRl~~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~---~~~~l~~~ 450 (934)
T 3thx_A 378 -EDLLRRFP--DLNRLAKKFQRQ-AANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTD---LRSDFSKF 450 (934)
T ss_dssp -TTTGGGCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHH---HHHHHHHH
T ss_pred -HHHhcCCC--CHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---HHhhHHHH
Confidence 01266666 488999999776 358999999999999888887666432100000000 0123333 33456678
Q ss_pred HHHHhhhcCCC------CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccc--cceeeeCCEEEEEecCC
Q 003163 190 IKSIMQVVDED------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNE--SLF--LEVSSIHGRLCIRTGAD 259 (843)
Q Consensus 190 ~~~I~~~id~~------G~v~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~~~--~~~--~~vt~r~gR~vipVk~~ 259 (843)
.+.|.++||++ |.|++++|++|+.+|+.+..+++.+.+.++++.+..... ..+ ......+.++.||++.+
T Consensus 451 ~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~ 530 (934)
T 3thx_A 451 QEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEE 530 (934)
T ss_dssp HHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHH
T ss_pred HHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEEeccceEEEEEEechh
Confidence 88899999876 479999999999999999999999999888877654321 111 12333333444554433
Q ss_pred Cc---ccceEEecccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003163 260 QL---SFKGLLLSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 336 (843)
Q Consensus 260 ~k---~~~giv~~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~~~a~a~ 336 (843)
.. +..|++++.+.++.++.|.++.++|+++.+++.++.+++++|+.+|...+..+.+.|..+.+++++||+++|+|.
T Consensus 531 ~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~ 610 (934)
T 3thx_A 531 KVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAH 610 (934)
T ss_dssp TTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 346999988888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--cCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHhHHhHHHHHHhhHhhHHHHHHhhhc
Q 003163 337 YSLS--FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLY 414 (843)
Q Consensus 337 ~a~~--~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (843)
+|.. +++|+|.++.. +...+.+.++|||++...
T Consensus 611 ~a~~~~~~~~rP~~~~~--------------------~~~~i~i~~~rHP~le~~------------------------- 645 (934)
T 3thx_A 611 VSNGAPVPYVRPAILEK--------------------GQGRIILKASRHACVEVQ------------------------- 645 (934)
T ss_dssp HHHTSSSCCBCCEEECT--------------------TSCEEEEEEECCTTTTTC-------------------------
T ss_pred HHHhccCCCcCCeeccC--------------------CCcceEeecCccchhhhc-------------------------
Confidence 9997 89999999731 134699999999998521
Q ss_pred CCCcccCCCccCCCCCchhhhhhccCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccccc
Q 003163 415 GGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 493 (843)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~ 493 (843)
.++.+|+++++|+ ..|++++|+||||||||||||+|+++.+|+|.|+++|+ ...
T Consensus 646 ------------------------~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~~ 700 (934)
T 3thx_A 646 ------------------------DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ESA 700 (934)
T ss_dssp --------------------------CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EEE
T ss_pred ------------------------CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-ccc
Confidence 1356899999999 67899999999999999999999999999999999998 677
Q ss_pred ccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh-cCCeEEE
Q 003163 494 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTI 572 (843)
Q Consensus 494 ~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~-~g~t~vl 572 (843)
.++.++.++..+|..+++..++|+|+++|.+++.++..+++|+||||||||+||||.++.++++++++++.+ .|++ +|
T Consensus 701 ~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~-vl 779 (934)
T 3thx_A 701 EVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF-CM 779 (934)
T ss_dssp EEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCE-EE
T ss_pred cchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCE-EE
Confidence 788889999999999999999999999999999999989999999999999999999999999999999987 4887 99
Q ss_pred EEccchhHHhhhccccceeeeEEEE--ecccceeeEEEecCCCCCChHHHHHHHcCCCHHHHHHHHHHHHH
Q 003163 573 ATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 641 (843)
Q Consensus 573 itTHd~el~~~a~~~~~v~ng~v~f--d~~~l~ptY~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~~~~ 641 (843)
++|||.++..+++++..+.||+|.+ +.+.+.++|++..|.++.|||+++|+.+|+|++|+++|+.++..
T Consensus 780 ~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~ 850 (934)
T 3thx_A 780 FATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALE 850 (934)
T ss_dssp EEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986 45678999999999999999999999999999999999987754
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=6.3e-55 Score=538.95 Aligned_cols=517 Identities=20% Similarity=0.220 Sum_probs=384.9
Q ss_pred hhhhhHhhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCC
Q 003163 46 KSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH-GSCSL 114 (843)
Q Consensus 46 ~~~~~~~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~-~~~~~ 114 (843)
-+.|+..|++-||.- .++..| .+|.|++|+++++.|+..|..+.+.|++||+-+.+++.-... ....-
T Consensus 394 ~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~L-d~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~ 472 (1022)
T 2o8b_B 394 RMVLDAVTLNNLEIFLNGTNGSTEGTLLERV-DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVE 472 (1022)
T ss_dssp BCBCCHHHHHHTTCSSCCSSSSCCCSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eEEeCHHHHHhhcCCccCCCCCCCCcHHHHh-CcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 355888888888753 355555 899999999999999777789999999999999887642100 00001
Q ss_pred CCCCCCchhHHHHHHhccc-CCC------------------CCHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhcc
Q 003163 115 DLTGVDLSLVKSAIREVRR-ASP------------------LRPNEALAVVALL---QFSETLQLSLRAAIKEDADLYIR 172 (843)
Q Consensus 115 ~~~~i~~~~v~~~l~ra~~-g~~------------------L~~~EL~~i~~~L---~~~~~lk~~l~~~~~~~~~~~~~ 172 (843)
-+..+. |+++.+.|+.. |.. .++.++.++..++ +.+..+...+..... .. .
T Consensus 473 ~L~~i~--DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~---~~--~ 545 (1022)
T 2o8b_B 473 LLKKLP--DLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVAD---GF--K 545 (1022)
T ss_dssp HHTTCC--CHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TC--C
T ss_pred HHhcCc--cHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc---cc--C
Confidence 155665 48888888876 331 2355566666554 444444333322110 00 0
Q ss_pred cccHHHHHH--------hcccchHHHHHHhhhcCC-----CCcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003163 173 FMPLTQMIM--------QLFVNRSLIKSIMQVVDE-----DGSI--KDSASPALKQSRGQVQMLERKLYQLMDMLIRNEN 237 (843)
Q Consensus 173 ~~~L~~l~~--------~l~~~~~l~~~I~~~id~-----~G~v--~D~AS~~L~~iR~~~~~~~~~l~~~l~~~~~~~~ 237 (843)
-+.|..+.. .+..+.++.+.|.++||+ +|.+ +++.||+|+.+|+.++..++.+.+.++++....+
T Consensus 546 s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~ 625 (1022)
T 2o8b_B 546 SKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIG 625 (1022)
T ss_dssp CHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSS
T ss_pred cHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122444432 344566677788899986 6777 6667999999999999988888777666532211
Q ss_pred ccccccceeeeCCEEEEEecCCCc-c-cceEE-e--cccCceeEEeeccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003163 238 NESLFLEVSSIHGRLCIRTGADQL-S-FKGLL-L--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQ 312 (843)
Q Consensus 238 ~~~~~~~vt~r~gR~vipVk~~~k-~-~~giv-~--~~sg~t~~iEP~~~v~lnn~l~~l~~~~~~e~~~il~~L~~~i~ 312 (843)
-.....++++++||+|+|+.+++ + +||.+ | +.+|.+.|+.|. +.+++.++..++.++.+.+..+..++...+.
T Consensus 626 -~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~e-l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 703 (1022)
T 2o8b_B 626 -CRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKT-IEKKLANLINAEERRDVSLKDCMRRLFYNFD 703 (1022)
T ss_dssp -CSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceeEEEecCceEEEEEehhhhcccCCCceEEeeeccCccEEechH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133577899999999999998 7 88765 4 347777898775 5566666666665555566677777777788
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCeeeCCcccccccCCCCcccccCCccccceEEeccccchhHHHHh
Q 003163 313 VDLDEIEKMLNGIIQLDVVNARATYSL--SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQH 390 (843)
Q Consensus 313 ~~~~~l~~~~~~l~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~arHPlL~~~~ 390 (843)
.+...|..+.+++++||+++|+|.+|. ..++|+|.++.+.. +...|.+.++|||++....
T Consensus 704 ~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~------------------~~~~l~i~~~rHP~l~~~~ 765 (1022)
T 2o8b_B 704 KNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPED------------------TPPFLELKGSRHPCITKTF 765 (1022)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTT------------------SCCCEEEEEECCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccCCC------------------CCceEEEEeccccEEEEEe
Confidence 899999999999999999999999999 78999999973100 1235999999999985211
Q ss_pred HHhHHHHHHhhHhhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeeEEEe-cC-------CeEEEEEcc
Q 003163 391 KQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RK-------TRVLVITGP 462 (843)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disL~-~~-------g~i~~ItGP 462 (843)
.++.+|+++++|+ .. |++++|+||
T Consensus 766 ------------------------------------------------~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGp 797 (1022)
T 2o8b_B 766 ------------------------------------------------FGDDFIPNDILIGCEEEEQENGKAYCVLVTGP 797 (1022)
T ss_dssp -------------------------------------------------CCCCCCEEEEESCCCSCC---CCCEEEEECC
T ss_pred ------------------------------------------------cCCceEeeeeeeccccccccCCCCcEEEEECC
Confidence 1346899999998 44 799999999
Q ss_pred CCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEec
Q 003163 463 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 542 (843)
Q Consensus 463 NGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDE 542 (843)
||||||||||+||++.+++|.|+++|+ ....++++++++..+|..+++..++++|+++|.++..+++.+++|+||||||
T Consensus 798 NgsGKSTlLr~iGl~~~~aqiG~~Vpq-~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 798 NMGGKSTLMRQAGLLAVMAQMGCYVPA-EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTCCEES-SEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHhheeEEecc-CcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 999999999999888899999999998 5568888999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEE---------ecccceeeEEEecCC
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF---------DEVKLKPTYKILWGV 612 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd~el~~~a~~~~~v~ng~v~f---------d~~~l~ptY~l~~G~ 612 (843)
||+|||+.++.++++++++++.+. |++ +|++|||.++.........+.||+|.+ +.+++.++|++..|.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~-vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~ 955 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCR-TLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGA 955 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCE-EEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCCCCceEEEeeecCCC
Confidence 999999999989889999999876 887 999999999997666666778999984 345789999999999
Q ss_pred CCCChHHHHHHHcCCCHHHHHHHHHHHH
Q 003163 613 PGRSSAINIAERLGLPGIVVQNARQLYG 640 (843)
Q Consensus 613 ~g~S~a~~iA~~~gl~~~ii~~A~~~~~ 640 (843)
+++|||+++|+++|+|++|+++|+.++.
T Consensus 956 ~~~Sygi~vA~l~Glp~~vi~rA~~~~~ 983 (1022)
T 2o8b_B 956 CPKSYGFNAARLANLPEEVIQKGHRKAR 983 (1022)
T ss_dssp CCCCHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.86 E-value=8e-22 Score=205.13 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=111.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------------------cccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEY--A 493 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------------------~G~~vpa~~~--~ 493 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... .
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 46789999999 8999999999999999999999976532110 0012222100 0
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+.+.+ .++..++..+......+++|+++++...+ .+++.+|+++||||||+||||..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 011111 12333444444455667888877665554 56789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+.|.| ||++|||.++..+|+++..+.+|.+..++
T Consensus 176 ~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 176 TKRVM-DIFLKINEGGTS-IVMVTHERELAELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEe
Confidence 76664 566667666887 99999999888899999999999987654
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.86 E-value=2.2e-21 Score=203.31 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=110.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc------------------------cccccccccc--cc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEY--AK 494 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q------------------------~G~~vpa~~~--~~ 494 (843)
..++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ..
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 4689999999 8999999999999999999999976532110 0112222110 01
Q ss_pred cchHHH------------------------HHhhcCchhhH-hhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCC
Q 003163 495 VPWFDS------------------------VFADIGDEQSL-SQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTN 548 (843)
Q Consensus 495 i~~~~~------------------------i~~~ig~~q~i-~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlD 548 (843)
+.+.++ ++..++..+.. ....+++|+++++... +.+++.+|++|||||||+|||
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 111222 22333433322 4556788887766554 456799999999999999999
Q ss_pred hhhHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 549 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 549 p~e~~al~~~lle~L~~-~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
|.....+. .++..+.+ .|.| ||++|||+++..+|+++..+.+|.+..+.
T Consensus 178 ~~~~~~i~-~~l~~l~~~~g~t-vi~vtHd~~~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 178 SKTGEKIM-QLLKKLNEEDGKT-VVVVTHDINVARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHHHHHHHcCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEc
Confidence 97777775 56666654 4887 99999999988899999999999997653
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=2e-21 Score=208.28 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=113.6
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------------cccccccc---cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEY---AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------------~~vpa~~~---~~ 494 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ..
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 34589999999 8999999999999999999999976532110 00 12222110 01
Q ss_pred cchH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
..+. ..++..++..+.......++|+++++...+ .+++.+|++|||||||+||||...
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 1111 123444555555566677889877665555 567999999999999999999777
Q ss_pred HHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 553 TALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 553 ~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
..+. .++..+. +.|.| ||++|||+++. .+|+++..+.+|.+.++.
T Consensus 180 ~~i~-~~l~~l~~~~g~t-vi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 180 SEIM-KLLVEMQKELGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHH-HHHHHHHHHHCCE-EEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred HHHH-HHHHHHHhhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7765 5666676 56887 99999998877 689999999999998664
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=2.1e-21 Score=207.23 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=113.4
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------cccccccccc--cccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~~vpa~~~--~~i~ 496 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... ...+++.... ..+.
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 457899999999 8999999999999999999999976532111 0011221000 0111
Q ss_pred h-------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCC------CCcEEEEecCCCCCChh
Q 003163 497 W-------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNII-SQST------SQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 497 ~-------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~------~p~LLLLDEP~sGlDp~ 550 (843)
+ ...++..++..+......+++|+++++...++ +++. +|++|||||||+||||.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 1 12234445555555566778898877666555 5566 99999999999999997
Q ss_pred hHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
....+. .++..+.+. +.| ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 182 ~~~~i~-~~l~~l~~~~~~t-vi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 182 HQQHTL-RLLRQLTRQEPLA-VCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHH-HHHHHHHHHSSEE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHHHcCCCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEc
Confidence 777765 566667655 456 99999998876 599999999999998764
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=4.5e-21 Score=203.55 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=112.4
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----c--------------ccccccccc--cccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----S--------------GLHILSSEY--AKVPW 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~--------------G~~vpa~~~--~~i~~ 497 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... . -.++|.... ..+.+
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 356799999999 8999999999999999999999976532110 0 012222110 00111
Q ss_pred H---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 F---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
. ..++..++..+......+++|+++++...+ .+++.+|++|||||||+||||.....+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 185 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence 1 122334455555556677889877665544 567999999999999999999777776
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 556 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 556 ~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+.++
T Consensus 186 ~-~~l~~l~~~g~t-iiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 186 R-KILKQASQEGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp H-HHHHHHHHTTCE-EEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred H-HHHHHHHhCCCE-EEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 4 566667767887 99999998876 57999999999998764
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=4.7e-21 Score=204.03 Aligned_cols=157 Identities=17% Similarity=0.231 Sum_probs=113.0
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc----------------------------c
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG----------------------------L 485 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G----------------------------~ 485 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 356799999999 8999999999999999999999976532110 00 1
Q ss_pred ccccccc--cccchH----------------------HHHHhhcCchhh-HhhhhhhhhHHhHHHHHH-HHhCCCCcEEE
Q 003163 486 HILSSEY--AKVPWF----------------------DSVFADIGDEQS-LSQSLSTFSGHLKQIGNI-ISQSTSQSLVL 539 (843)
Q Consensus 486 ~vpa~~~--~~i~~~----------------------~~i~~~ig~~q~-i~~~lstfS~~~~~l~~i-l~~a~~p~LLL 539 (843)
++|.... ..+.+. ..++..++..+. .....+++|+++++...+ .+++.+|++||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2222100 001111 123444555555 566778899877665554 56789999999
Q ss_pred EecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 540 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 540 LDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
|||||+||||.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+
T Consensus 177 LDEPts~LD~~~~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVL-RIMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp EESTTTTSCHHHHHHHH-HHHHHHHHTTCC-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCCccCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999997777665 566667666887 99999998876 58999999999998764
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.84 E-value=7e-21 Score=202.85 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=111.6
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------------cccccccc--cc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEY--AK 494 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------------~~vpa~~~--~~ 494 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ..
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 456799999999 8999999999999999999999976532110 01 12222100 00
Q ss_pred cchHH----------------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhh
Q 003163 495 VPWFD----------------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 495 i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+.+.+ .++..++..+......+++|+++++... +.+++.+|++|||||||+||||..
T Consensus 115 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 11111 1233344444445556778887766554 456799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+.++.
T Consensus 195 ~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 195 VGEVL-SVMKQLANEGMT-MVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 76664 566667666887 99999998776 589999999999987653
No 13
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.84 E-value=7e-21 Score=210.83 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=115.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------------ccccccccc---
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEYA--- 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------------~~vpa~~~~--- 493 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++. ...
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ-~~~l~p 93 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ-EGVLFP 93 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT-TCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC-CCcCCC
Confidence 456799999999 8999999999999999999999976532211 01 01111 000
Q ss_pred ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 494 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 494 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.+.+.+ .++..++..+.......++|+++++...+ .+++.+|++|||||||+|||+..
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 111122 23344455555556677888877655544 56799999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
...+...+.+.+.+.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 174 r~~l~~~l~~~~~~~g~t-vi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 174 RRQIREDMIAALRANGKS-AVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 887765566666677887 99999998776 699999999999997654
No 14
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=4.6e-21 Score=203.42 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=110.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc---------------------cccccccccc--ccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEY--AKV 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q---------------------~G~~vpa~~~--~~i 495 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ..+
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 356799999999 8999999999999999999999976532110 0012221000 001
Q ss_pred chHH----------------------------------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEE
Q 003163 496 PWFD----------------------------------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLL 540 (843)
Q Consensus 496 ~~~~----------------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLL 540 (843)
.+.+ .++..+|..+......+++|+++++...+ .+++.+|++|||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 177 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 22334444444455667788877665555 567899999999
Q ss_pred ecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 541 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 541 DEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
||||+||||.....+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+.++
T Consensus 178 DEPts~LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 178 DEPIAGVAPGLAHDIF-NHVLELKAKGIT-FLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp ESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred eCCccCCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999997777765 566667766887 99999998765 69999999999998754
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=5.6e-21 Score=200.76 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----c----------------ccccccccc--ccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----S----------------GLHILSSEY--AKV 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~----------------G~~vpa~~~--~~i 495 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... . -.++|.... ..+
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 346789999999 8999999999999999999999976532110 0 112222100 011
Q ss_pred chHHHH--------------------Hhhc-CchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWFDSV--------------------FADI-GDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~~~i--------------------~~~i-g~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+.+++ +..+ +..+......+++|+++++.. .+.+++.+|++|||||||+||||....
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 112222 2222 133333344556787766554 455779999999999999999997777
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003163 554 ALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 598 (843)
Q Consensus 554 al~~~lle~L~~~g~t~vlitTHd~el-~~~a~~~~~v~ng~v~fd 598 (843)
.+. .++..+.+.|.| ||++|||.+. ..+|+++..+.+|.+..+
T Consensus 177 ~l~-~~l~~~~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 177 EVF-EVIQKINQEGTT-ILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHH-HHHHHHHHTTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 665 566667667887 9999999865 479999999999998754
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=7.4e-21 Score=210.89 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=113.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------------cccccccccc--ccc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------SGLHILSSEY--AKV 495 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------------~G~~vpa~~~--~~i 495 (843)
..++++++|+ ..|++++|+||||||||||||+|+++..... .-.+++.... ..+
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 4689999999 9999999999999999999999976532110 0012222100 011
Q ss_pred chH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHH
Q 003163 496 PWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGT 553 (843)
Q Consensus 496 ~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~ 553 (843)
.+. ..++..+|..+......+++|+++++...| .+++.+|++|||||||+||||....
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 111 123445566555666778899887766555 5678999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 554 ALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 554 al~~~lle~L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.+. .++..+.+ .|.| ||++|||++.+ .+|+++..+.+|.+..+.
T Consensus 201 ~i~-~lL~~l~~~~g~T-ii~vTHdl~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 201 SIL-ELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHH-HHHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEEEETTEEEECC
T ss_pred HHH-HHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 775 56666754 4887 99999999877 689999999999998654
No 17
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=1.6e-20 Score=209.39 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=114.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccccc---ccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSEYA---KVPW 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~~~---~i~~ 497 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++. ... .+.+
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ-~~~l~p~ltV 92 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ-SYALYPHLSV 92 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT-TCCCCTTSCH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec-CCcCCCCCCH
Confidence 456799999999 8999999999999999999999976542211 00 01111 111 1111
Q ss_pred H---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHH
Q 003163 498 F---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTAL 555 (843)
Q Consensus 498 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al 555 (843)
. ..++..++..+......+++|+++++...+ .+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l 172 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 1 123445566666666778889877665555 566899999999999999999777777
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 556 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 556 ~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
. .++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 173 ~-~~l~~l~~~~g~t-ii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 173 R-IEISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp H-HHHHHHHHHHCCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred H-HHHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 5 4555564 45887 99999998766 799999999999997653
No 18
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=2.5e-20 Score=197.43 Aligned_cols=155 Identities=16% Similarity=0.060 Sum_probs=110.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-------cccccccccc--cccch-------------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEY--AKVPW------------- 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-------~G~~vpa~~~--~~i~~------------- 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ....+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 96 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHIN 96 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSC
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcc
Confidence 45789999999 8999999999999999999999976532110 0012222100 00111
Q ss_pred ------------HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 498 ------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 498 ------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
...++..++..+......+++|+++++...+ .+++.+|++|||||||+||||.....+. .++..+.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~l~~l~ 175 (253)
T 2nq2_C 97 TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL-SLLIDLA 175 (253)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHH-HHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 1223445555555566677889877665544 5678999999999999999997777765 5566666
Q ss_pred hc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 565 ES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 565 ~~-g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+. |.| ||++|||.+.. .+|+++..+.+|. ..+
T Consensus 176 ~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 176 QSQNMT-VVFTTHQPNQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HTSCCE-EEEEESCHHHHHHHCSEEEEEETTE-EEE
T ss_pred HhcCCE-EEEEecCHHHHHHhCCEEEEEeCCe-Eec
Confidence 55 887 99999998876 6999999999998 543
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=3e-20 Score=205.73 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=110.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccc--ccccchH-
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWF- 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~--~~~i~~~- 498 (843)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++... ...+.+.
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHH
Confidence 45689999999 8999999999999999999999976532111 00 0122100 0001111
Q ss_pred --------------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 499 --------------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 499 --------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
..++..++..+......+++|+++++.. .+.+++.+|++|||||||+|||+.....+.
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~- 185 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR- 185 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 1234445555555666778888776554 455679999999999999999997777775
Q ss_pred HHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 558 SLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 558 ~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 186 ~~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 186 TFVRQVHDEMGVT-SVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4555554 45887 99999998766 68999999999998754
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.82 E-value=2.2e-20 Score=199.23 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=112.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----------------cccccccccc---cccch---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEY---AKVPW--- 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----------------~G~~vpa~~~---~~i~~--- 497 (843)
+.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ....+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 5689999999 8999999999999999999999976531100 0012332100 00111
Q ss_pred -----------------HHHHHhhcCch--hhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHH
Q 003163 498 -----------------FDSVFADIGDE--QSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGM 557 (843)
Q Consensus 498 -----------------~~~i~~~ig~~--q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~ 557 (843)
+..++..+|.. +......+++|+++++... +.+++.+|++|||||||+|||+.....+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~- 178 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL- 178 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHH-
Confidence 12334555665 5566667789987766554 45679999999999999999997777664
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 558 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 558 ~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+..+.
T Consensus 179 ~~l~~l~~~g~t-ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 179 RIVEKWKTLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp HHHHHHHHTTCE-EEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 566667656887 99999998776 589999999999987653
No 21
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=3.8e-20 Score=205.25 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=111.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccc--ccccch-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPW- 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~--~~~i~~- 497 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++... ...+.+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 346789999999 8999999999999999999999976532110 00 0122100 001111
Q ss_pred --------------------HHHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 498 --------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 498 --------------------~~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+..++..++..+......+++|+++++.. .+.+++.+|++|||||||+|||+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMR 173 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 12234455555555666778898776554 455679999999999999999997777775
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 174 -~~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 174 -AEIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp -HHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 4555554 45887 99999998766 79999999999998754
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.82 E-value=2.8e-20 Score=196.33 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------ccccccccc-ccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEYA-KVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------~~vpa~~~~-~i~~~ 498 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|..... ...+.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHH
Confidence 45789999999 8999999999999999999999976532110 00 122221000 01112
Q ss_pred HHH---------------HhhcCchhhHhh-----------hhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSV---------------FADIGDEQSLSQ-----------SLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i---------------~~~ig~~q~i~~-----------~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++ +..++..+.+.. ..+++|+++++... +.+++.+|++|||||||+|||+..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 222 112222222221 23578877765554 456799999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
...+. .++..+. .|.| ||++||+.+....|+++..+.+|.+..+.
T Consensus 181 ~~~i~-~~l~~~~-~g~t-viivtH~~~~~~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 181 EHVIM-RNMHKIC-KGRT-VIIIAHRLSTVKNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHH-HHHHHHH-TTSE-EEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHc-CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 77765 5556665 4787 99999999888789999999999987653
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.82 E-value=2e-20 Score=196.67 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=107.6
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------cccccccc--cccchH----
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSEY--AKVPWF---- 498 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~~--~~i~~~---- 498 (843)
++++++|+ .. ++++|+||||||||||||+|+++..... .| .++|.... ..+.+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 48899999 77 9999999999999999999976532110 00 12222100 001111
Q ss_pred ---------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 499 ---------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 499 ---------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
..++..++..+......+++|+++++...+ .+++.+|+++||||||+||||.....+. .++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~-~~l~~ 171 (240)
T 2onk_A 93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM-EELRF 171 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH-HHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 123344555544555667888877665554 5679999999999999999997777665 56666
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 563 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 563 L~~-~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
+.+ .|.| ||++|||.+.. .+|+++..+.+|.+..+.
T Consensus 172 l~~~~g~t-vi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 172 VQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 654 4887 99999998765 789999999999987653
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.82 E-value=3e-20 Score=196.50 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=110.5
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-c---cc---------------cccccccc--cccchH--
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-K---SG---------------LHILSSEY--AKVPWF-- 498 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q---~G---------------~~vpa~~~--~~i~~~-- 498 (843)
.++++++|+ ..|++++|+||||||||||||+|+++.... . .| .++|.... ..+.+.
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 589999999 899999999999999999999997664221 0 00 12222100 001111
Q ss_pred --------------HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCc-------EEEEecCCCCCChhhHHHHH
Q 003163 499 --------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQS-------LVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 --------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~-------LLLLDEP~sGlDp~e~~al~ 556 (843)
..++..++..+.......++|+++++...+ .+++.+|+ +|||||||+||||.....+.
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 223444555555556677888877665554 56678899 99999999999997777665
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+
T Consensus 174 -~~l~~l~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 174 -KILSALSQQGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp -HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 566667666887 99999998877 79999999999998764
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=2.7e-20 Score=199.91 Aligned_cols=158 Identities=18% Similarity=0.093 Sum_probs=110.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-----------------cccccccc----
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEY---- 492 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-----------------~~vpa~~~---- 492 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|....
T Consensus 32 ~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 356799999999 8999999999999999999999976532110 00 11221000
Q ss_pred cccchHH-------------------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCC
Q 003163 493 AKVPWFD-------------------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 493 ~~i~~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sG 546 (843)
..+.+.+ .++..+|..+......+++|+++++... +.+++.+|++|||||||+|
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 0001111 1233344444445566778887766554 4567899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEE--EEEccchhHH-hhhccccceeeeEEEEec
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLT--IATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~v--litTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
||+.....+. .++..+.+.|.| | |++|||.+.. .+|+++..+.+|.+.++.
T Consensus 192 LD~~~~~~l~-~~l~~l~~~g~t-v~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 192 LDFIARESLL-SILDSLSDSYPT-LAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp CCHHHHHHHH-HHHHHHHHHCTT-CEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred cCHHHHHHHH-HHHHHHHHCCCE-EEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9997777765 566666666887 8 9999998776 689999999999987653
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.82 E-value=2.3e-20 Score=199.69 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=105.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------cccccccc-cccchHH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEY-AKVPWFD 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------~~vpa~~~-~~i~~~~ 499 (843)
..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ....+.+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 5789999999 8999999999999999999999976532110 00 12222100 0011222
Q ss_pred HHHh-------------------------hc--CchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhh
Q 003163 500 SVFA-------------------------DI--GDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 500 ~i~~-------------------------~i--g~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
++.. .+ |....+....+++|+++++. ..+.+++.+|+||||||||+|||+..
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 191 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 2211 11 11111223446788777655 45567799999999999999999977
Q ss_pred HHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~-~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+. +.|.| ||++||+.++...|+++..+.+|.+..+
T Consensus 192 ~~~i~-~~l~~~~~~~g~t-viivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 192 QLRVQ-RLLYESPEWASRT-VLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHH-HHHHHCTTTTTSE-EEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred HHHHH-HHHHHHHhhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 66664 5555554 34777 9999999988878999999999988754
No 27
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=4.4e-20 Score=204.92 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=111.0
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccc--ccccchH
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWF 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~--~~~i~~~ 498 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++... ...+.+.
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 345789999999 8999999999999999999999976532211 00 1122100 0011111
Q ss_pred H---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 D---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
+ +++..++..+......+++|+++++.. .+.+++.+|++|||||||+|||+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 1 223344554445556678888776554 455679999999999999999997777775
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 174 -~~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 174 -AELKRLQKELGIT-TVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp -HHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4555564 45887 99999998765 79999999999998764
No 28
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=5.2e-20 Score=205.23 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=110.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------------ccccccccc-
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------------LHILSSEYA- 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------------~~vpa~~~~- 493 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++. ...
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q-~~~l 92 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ-SYAL 92 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECS-CCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeC-CCcc
Confidence 346789999999 8999999999999999999999976532111 00 01111 100
Q ss_pred --ccchHH---------------------HHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 494 --KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 494 --~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+.+ .++..++..+......+++|+++++.. .+.+++.+|++|||||||+|||+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~ 172 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 111111 123334444445556678888776554 45567899999999999999999
Q ss_pred hhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd~ 599 (843)
.....+. .++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 173 ~~r~~l~-~~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 173 KLRVRMR-AELKKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp HHHHHHH-HHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 7777775 4555554 45887 99999998776 699999999999987653
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=1.8e-20 Score=195.53 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=105.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHHH---------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV--------- 501 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~i--------- 501 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+++
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEY 98 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-ccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChH
Confidence 46799999999 899999999999999999999997653221 11 133321100 00111221
Q ss_pred -----HhhcCchhhHhh-----------hhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 502 -----FADIGDEQSLSQ-----------SLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 502 -----~~~ig~~q~i~~-----------~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
....+..+.+.. ...++|+++++... +.+++.+|+++||||||+|||+.....+...++..+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 112222222211 22578887765554 4567899999999999999999776666433333333
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 565 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+.| ||++||+.++...|+++..+.+|.+..+.
T Consensus 179 -~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 179 -ANKT-RILVTSKMEHLKKADKILILHEGSSYFYG 211 (229)
T ss_dssp -TTSE-EEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred -CCCE-EEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence 3676 99999999888789999999999987653
No 30
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=4.3e-20 Score=204.56 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=110.2
Q ss_pred Ccc--ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc------------------ccccccc--c
Q 003163 441 AHP--VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG------------------LHILSSE--Y 492 (843)
Q Consensus 441 ~~~--V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G------------------~~vpa~~--~ 492 (843)
+.. ++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++... .
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccC
Confidence 345 89999999 8999999999999999999999976532110 00 0111100 0
Q ss_pred cccchH---------------------HHHHhhcCchhhHhhhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChh
Q 003163 493 AKVPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 493 ~~i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
..+.+. ..++..++..+......+++|+++++.. .+.+++.+|++|||||||+|||+.
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 001111 1233445555555566678888776554 455679999999999999999998
Q ss_pred hHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
....+.. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 175 ~r~~l~~-~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~~ 222 (353)
T 1oxx_K 175 MRDSARA-LVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (353)
T ss_dssp GHHHHHH-HHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8877754 555554 45887 99999998765 68999999999998754
No 31
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=3.4e-20 Score=195.99 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=104.3
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhcccc----------------------cccccccc--c
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSG----------------------LHILSSEY--A 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G----------------------~~vpa~~~--~ 493 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++. +.+..| .++|.... .
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 346799999999 899999999999999999999998751 111111 12222100 0
Q ss_pred ccchHH------------------------HHHhhcCc-hhhHhhhhhh-hhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 494 KVPWFD------------------------SVFADIGD-EQSLSQSLST-FSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 494 ~i~~~~------------------------~i~~~ig~-~q~i~~~lst-fS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
.+.+.+ .++..+|. .+......++ +|+++++...+ .+++.+|++|||||||+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 173 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 001111 11222333 2333445566 89877665554 567899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEe
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFD 598 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~-a~~~~~v~ng~v~fd 598 (843)
||+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+
T Consensus 174 LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 174 LDIDALKVVA-RGVNAMRGPNFG-ALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp TCHHHHHHHH-HHHHHHCSTTCE-EEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 9997777664 566667666887 999999988775 5 588888999988654
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=6e-20 Score=204.54 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=110.4
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccc--ccccchH
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWF 498 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~--~~~i~~~ 498 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++... ...+.+.
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 456789999999 8999999999999999999999976532211 00 0111100 0001111
Q ss_pred ---------------------HHHHhhcCchhhHhhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCChhhHHHHH
Q 003163 499 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALG 556 (843)
Q Consensus 499 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp~e~~al~ 556 (843)
..++..++..+......+++|+++++. ..+.+++.+|++|||||||+|||+.....+.
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 181 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 181 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 123344455555555667788776554 5556779999999999999999997777775
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 557 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 557 ~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
.++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 182 -~~l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 182 -AEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp -HHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 4555554 45887 99999998766 79999999999998754
No 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.81 E-value=6.1e-20 Score=202.86 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=110.2
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc-------------ccccccccc---ccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSEYA---KVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G-------------~~vpa~~~~---~i~~~ 498 (843)
+. ++++++|+ ..|++++|+||||||||||||+|+++..... .| .+++. ... .+.+.
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q-~~~l~~~ltv~ 90 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ-NYSLFPHMNVK 90 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT-TCCCCTTSCHH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec-CcccCCCCCHH
Confidence 45 89999999 8999999999999999999999976532111 00 12221 111 11111
Q ss_pred ------------------HHHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 499 ------------------DSVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 499 ------------------~~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
..++..++..+......+++|+++++... +.+++.+|++|||||||+|||+.....+. .+
T Consensus 91 enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~-~~ 169 (348)
T 3d31_A 91 KNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR-EM 169 (348)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHH-HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH-HH
Confidence 22344455555555667788887765554 45679999999999999999997777765 55
Q ss_pred HHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003163 560 LEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 598 (843)
Q Consensus 560 le~L~-~~g~t~vlitTHd~el~-~~a~~~~~v~ng~v~fd 598 (843)
+..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 170 l~~l~~~~g~t-ii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 170 LSVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 55565 45887 99999998765 79999999999988754
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.80 E-value=6.5e-20 Score=195.70 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh-hhccccc----------------------cccccccc--
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEYA-- 493 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~-~~~q~G~----------------------~vpa~~~~-- 493 (843)
+++.++++++|+ ..|++++|+||||||||||||+|+++. +.+..|. ++|.....
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 456799999999 899999999999999999999998762 1111111 12221000
Q ss_pred ccchH----------------------------HHHHhhcCch-hhHhhhhh-hhhHHhHHHHHH-HHhCCCCcEEEEec
Q 003163 494 KVPWF----------------------------DSVFADIGDE-QSLSQSLS-TFSGHLKQIGNI-ISQSTSQSLVLLDE 542 (843)
Q Consensus 494 ~i~~~----------------------------~~i~~~ig~~-q~i~~~ls-tfS~~~~~l~~i-l~~a~~p~LLLLDE 542 (843)
.+... ..++..+|.. ........ ++|+++++...+ .+++.+|++|||||
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE 190 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 00000 1122233332 12233444 488877665554 56789999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEe
Q 003163 543 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFD 598 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~-~-a~~~~~v~ng~v~fd 598 (843)
||+|||+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+
T Consensus 191 Pts~LD~~~~~~l~-~~l~~l~~~g~t-viivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 191 SDSGLDIDALKVVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp TTTTCCHHHHHHHH-HHHHTTCCSSCE-EEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 99999997776664 566666666887 999999998875 4 799999999998754
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=1.5e-19 Score=192.66 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=107.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-------------------ccccccccccchH---
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYAKVPWF--- 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-------------------~vpa~~~~~i~~~--- 498 (843)
+.++++++|+ . |++++|+||||||||||||+|+++. .. .|. ++|..........
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~-~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY-SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC-CcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHH
Confidence 5689999999 8 9999999999999999999998765 32 221 3332111011111
Q ss_pred --------------HHHHhhcCch-hhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHH
Q 003163 499 --------------DSVFADIGDE-QSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 562 (843)
Q Consensus 499 --------------~~i~~~ig~~-q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~ 562 (843)
..++..++.. +......+++|+++++... +.+++.+|++|||||||+|||+.....+. .++..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~L~~ 173 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS-RYIKE 173 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH-HHHHH
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH-HHHHH
Confidence 1234445655 5566677889987766554 45678999999999999999997666664 44444
Q ss_pred HHhcCCeEEEEEccchhHH-hhhc-cccceeeeEEEEec
Q 003163 563 FAESGSLLTIATTHHGELK-TLKY-SNDFFENACMEFDE 599 (843)
Q Consensus 563 L~~~g~t~vlitTHd~el~-~~a~-~~~~v~ng~v~fd~ 599 (843)
+.+ | ||++|||.++. .+|+ ++..+.+|.+....
T Consensus 174 ~~~---t-viivtHd~~~~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 174 YGK---E-GILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp SCS---E-EEEEESCGGGGGGCTTSEEEEEETTEEEEEE
T ss_pred hcC---c-EEEEEcCHHHHHHhcCceEEEEECCEEEEec
Confidence 432 6 99999998775 6999 99999999987653
No 36
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=4.4e-20 Score=194.21 Aligned_cols=153 Identities=14% Similarity=0.121 Sum_probs=103.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc-ccch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~-~i~~ 497 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 45789999999 899999999999999999999997653211 11 122221000 0011
Q ss_pred HHHH----------------HhhcCchhhHh-----------hhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 498 FDSV----------------FADIGDEQSLS-----------QSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 498 ~~~i----------------~~~ig~~q~i~-----------~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
.+++ +..++..+.+. ...+++|+++++.. .+.+++.+|++|||||||+||||
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 1111 11112211111 12347887776554 44567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~f 597 (843)
.....+. .++..+. .|.| ||++||+.+...+|+++..+.+|.+..
T Consensus 173 ~~~~~i~-~~l~~~~-~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 173 ESESMVQ-KALDSLM-KGRT-TLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp SSCCHHH-HHHHHHH-TTSE-EEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred HHHHHHH-HHHHHhc-CCCE-EEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 7777775 4555666 5887 999999998887899999998888753
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=1.1e-19 Score=188.02 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=98.0
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc----------cccccccc--cccchHH-----
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG----------LHILSSEY--AKVPWFD----- 499 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G----------~~vpa~~~--~~i~~~~----- 499 (843)
.++++++|+ ..|++++|+||||||||||||+|+++..... .| .++|.... ..+.+.+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 789999999 8999999999999999999999976532110 01 12332110 0011111
Q ss_pred --------------HHHhhcCchhhHhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH
Q 003163 500 --------------SVFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 564 (843)
Q Consensus 500 --------------~i~~~ig~~q~i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~ 564 (843)
.++..++.... ....+++|+++++... +.+++.+|+++||||||+||||.....+. .++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~-~~l~~~~ 180 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEIL 180 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHH-HHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHH-HHHHHHH
Confidence 22333444433 5556788887765554 45678999999999999999997777775 5556666
Q ss_pred hcCCeEEEEEccchhHHh-hhcccc
Q 003163 565 ESGSLLTIATTHHGELKT-LKYSND 588 (843)
Q Consensus 565 ~~g~t~vlitTHd~el~~-~a~~~~ 588 (843)
+.|.+ ||++||+.+... +++++.
T Consensus 181 ~~g~t-iiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 181 KEKGI-VIISSREELSYCDVNENLH 204 (214)
T ss_dssp HHHSE-EEEEESSCCTTSSEEEEGG
T ss_pred hCCCE-EEEEeCCHHHHHHhCCEEE
Confidence 56787 999999987764 555544
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.79 E-value=8.8e-20 Score=191.39 Aligned_cols=155 Identities=11% Similarity=0.072 Sum_probs=104.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------cccccccc-cccchHHHHH--------
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSVF-------- 502 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~-~~i~~~~~i~-------- 502 (843)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ....+.+++.
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~ 95 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEP 95 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTT
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHH
Confidence 35789999999 899999999999999999999997653221 11 12332110 0111222221
Q ss_pred ------hhcCchhh-----------HhhhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH--HH
Q 003163 503 ------ADIGDEQS-----------LSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL--EA 562 (843)
Q Consensus 503 ------~~ig~~q~-----------i~~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll--e~ 562 (843)
..++..+. +....+++|+++++... +.+++.+|+++||||||+||||.....+...+. ..
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 175 (237)
T 2cbz_A 96 YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175 (237)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh
Confidence 11111111 12334678877765544 456789999999999999999976666654332 22
Q ss_pred HHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 563 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 563 L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
+. .|.| ||++||+.+...+|+++..+.+|.+...
T Consensus 176 ~~-~~~t-viivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 176 ML-KNKT-RILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp TT-TTSE-EEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred hc-CCCE-EEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 32 4777 9999999888878999999999988654
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=2.2e-19 Score=190.98 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=103.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccc-cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY-AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~-~~i~~~ 498 (843)
..++++++|+ ..|++++|+||||||||||||+|+++... .|. ++|.... ....+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHH
Confidence 4689999999 89999999999999999999999765421 121 1221000 001112
Q ss_pred HHHH---------------hhcCchhhHh-----------hhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSVF---------------ADIGDEQSLS-----------QSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i~---------------~~ig~~q~i~-----------~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++. ..++..+.+. ....++|+++++.. .+.+++.+|++|||||||+||||..
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2221 1112222111 12356887776554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
...+. .++..+.+ +.| ||++||+.++...|+++..+.+|.+..+
T Consensus 191 ~~~i~-~~l~~l~~-~~t-viivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 191 EYLFQ-KAVEDLRK-NRT-LIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHH-HHHHHHTT-TSE-EEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 66664 56666654 776 9999999988778999999999988654
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.77 E-value=2.4e-19 Score=193.60 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=104.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc--------ccccccccc-ccchHHHHH---------
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 502 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G--------~~vpa~~~~-~i~~~~~i~--------- 502 (843)
+.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+.+++.
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE-EEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHH
Confidence 5689999999 899999999999999999999997653221 11 133321100 012222222
Q ss_pred ----hhcCchhhHhh-----------hhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc
Q 003163 503 ----ADIGDEQSLSQ-----------SLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 566 (843)
Q Consensus 503 ----~~ig~~q~i~~-----------~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~ 566 (843)
...+..+.+.. ...++|+++++...+ .+++.+|+++||||||+|||+.....+...++..+. .
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~ 208 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A 208 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C
Confidence 11222222211 125788877665554 567899999999999999999776666433333333 4
Q ss_pred CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 567 GSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 567 g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
|.| ||++||+.+...+|+++..+.+|.+.+.
T Consensus 209 ~~t-viivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 209 NKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp TSE-EEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred CCE-EEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 776 9999999988888999999999988654
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.77 E-value=1.1e-18 Score=189.76 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=105.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------ccccccccccc--ccc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA--KVP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~~vpa~~~~--~i~ 496 (843)
++..++++++|+ ..|++++|+||||||||||+|+|.++.-... .-.++|. ... ...
T Consensus 65 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q-~~~lf~~T 143 (306)
T 3nh6_A 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ-DTVLFNDT 143 (306)
T ss_dssp TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECS-SCCCCSEE
T ss_pred CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEec-CCccCccc
Confidence 346799999999 8999999999999999999999976432111 0012232 110 011
Q ss_pred hHHHHH---------------hhcCchhhHhh-----------hhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSVF---------------ADIGDEQSLSQ-----------SLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i~---------------~~ig~~q~i~~-----------~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++. ...+..+.+.. ....+|+++++. ..+.+++.+|++|||||||+|||+
T Consensus 144 v~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred HHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 222221 11122222211 114578776655 445567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+. .++..+.. +.| +|++||++.....|+++..+.+|.+...+
T Consensus 224 ~~~~~i~-~~l~~l~~-~~T-vi~itH~l~~~~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 224 SNERAIQ-ASLAKVCA-NRT-TIVVAHRLSTVVNADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHH-HHHHHHHT-TSE-EEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHcC-CCE-EEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 7777665 45555554 676 99999999988889999999999997654
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=194.44 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=108.9
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------ccccccccc--c
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--V 495 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------~vpa~~~~~--i 495 (843)
++..++++++|+ ..|++++|+||||||||||||+|+++.. ..|. +++. .... .
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q-~~~lf~~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQ-KVFIFSG 108 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESC-CCCCCSE
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcC-CcccCcc
Confidence 456799999999 9999999999999999999999976532 1121 1221 1000 0
Q ss_pred chHH--------------HHHhhcCchhhHhhhhhh-----------hhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 496 PWFD--------------SVFADIGDEQSLSQSLST-----------FSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 496 ~~~~--------------~i~~~ig~~q~i~~~lst-----------fS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
.+.+ .++..++..+.+...... +|+++++.. .+.+++.+|++|||||||+|||+
T Consensus 109 tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~ 188 (390)
T 3gd7_A 109 TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188 (390)
T ss_dssp EHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCH
T ss_pred CHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 1111 223344555545555455 888776554 45567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+. .++..+. .+.| +|++||+.+...+|+++..+.+|.+....
T Consensus 189 ~~~~~l~-~~l~~~~-~~~t-vi~vtHd~e~~~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 189 VTYQIIR-RTLKQAF-ADCT-VILCEARIEAMLECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHH-HHHHTTT-TTSC-EEEECSSSGGGTTCSEEEEEETTEEEEES
T ss_pred HHHHHHH-HHHHHHh-CCCE-EEEEEcCHHHHHhCCEEEEEECCEEEEEC
Confidence 7766664 4444433 4677 99999999888889999999999997643
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.71 E-value=1.9e-17 Score=193.13 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=103.3
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc--------------------------------ccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH--------------------------------ILS 489 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~--------------------------------vpa 489 (843)
.++.+++ . ..|++++|+||||||||||||+|+++.... .|.. ++.
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~-~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN-LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4788888 7 788999999999999999999997653221 1110 000
Q ss_pred cc---c----ccc----------chHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 490 SE---Y----AKV----------PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 490 ~~---~----~~i----------~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.. . ..+ .....++..+|.........+++|+++++...| .+++.+|++|||||||+|||+..
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 00 0 000 012234555666666667778899887666555 46689999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
...+. .+++.+.+.|.| ||++|||+++. .+|+++..+.+
T Consensus 194 ~~~l~-~~L~~l~~~g~t-vi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 194 RLNAA-RAIRRLSEEGKS-VLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEcC
Confidence 77664 566777777887 99999998877 57888776654
No 44
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=2.2e-17 Score=197.30 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=68.9
Q ss_pred hhhhhhhhHHhHHHHHHH-HhCCCCc--EEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 512 SQSLSTFSGHLKQIGNII-SQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il-~~a~~p~--LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
....+++|+++++...++ +++.+|+ ||||||||+||||.....+. .++..+.+.|.| ||+||||+++..+|+++.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~ii 274 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNT-LIVVEHDEDTMLAADYLI 274 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCE-EEEECCCHHHHHHCSEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHhhCCEEE
Confidence 355678898877665554 5577877 99999999999998888775 567778878887 999999999888899888
Q ss_pred ce------eeeEEEEe
Q 003163 589 FF------ENACMEFD 598 (843)
Q Consensus 589 ~v------~ng~v~fd 598 (843)
.+ .+|.+.++
T Consensus 275 ~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 275 DIGPGAGIHGGEVVAA 290 (670)
T ss_dssp EECSSSGGGCCSEEEE
T ss_pred EecccccccCCEEEEe
Confidence 88 78888764
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.70 E-value=2.5e-17 Score=191.97 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=99.4
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------cccccccc--ccch---------------
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------HILSSEYA--KVPW--------------- 497 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------~vpa~~~~--~i~~--------------- 497 (843)
+...+++ ..|++++|+||||||||||||+|+++..... |. ++|..... ...+
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE-GSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB-CCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence 3333445 6789999999999999999999976543211 11 22221000 0111
Q ss_pred ---HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-hcCCeEEE
Q 003163 498 ---FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTI 572 (843)
Q Consensus 498 ---~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~-~~g~t~vl 572 (843)
...++..++..+......+++|+++++...+ .+++.+|++|||||||+|||+.....+. .++..+. +.|.| ||
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~-~~l~~l~~~~g~t-vi 440 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA-KAIKRVTRERKAV-TF 440 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHHHHTTCE-EE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCE-EE
Confidence 1223344555556667778899877665554 5678999999999999999997777775 5555565 45887 99
Q ss_pred EEccchhHH-hhhccccceee
Q 003163 573 ATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 573 itTHd~el~-~~a~~~~~v~n 592 (843)
++|||++++ .+|+++..+.+
T Consensus 441 ~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 441 IIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp EECSCHHHHHHHCSEEEEEEE
T ss_pred EEeCCHHHHHHhCCEEEEEeC
Confidence 999999887 47888877764
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2e-17 Score=195.02 Aligned_cols=147 Identities=18% Similarity=0.153 Sum_probs=99.7
Q ss_pred cceeeEEEe-cCC-----eEEEEEccCCCCchhhhhcccchhhhccccc--------cccccccc--ccchHH-------
Q 003163 443 PVPIDIFIA-RKT-----RVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSEYA--KVPWFD------- 499 (843)
Q Consensus 443 ~V~~disL~-~~g-----~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~--------~vpa~~~~--~i~~~~------- 499 (843)
.+..+++|+ ..| ++++|+||||||||||||+|+++.... .|. ++|..... ...+.+
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcCccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 355667777 445 789999999999999999997664322 121 22221000 001111
Q ss_pred ----------HHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHH-HhcC
Q 003163 500 ----------SVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF-AESG 567 (843)
Q Consensus 500 ----------~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L-~~~g 567 (843)
.++..++..+......+++||++++...+ .+++.+|++|||||||+|||+.....+. .++..+ .+.|
T Consensus 440 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~-~ll~~l~~~~g 518 (608)
T 3j16_B 440 GQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS-KVIRRFILHNK 518 (608)
T ss_dssp STTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH-HHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHhCC
Confidence 12233344444455667889877665555 5678999999999999999997777775 455555 4568
Q ss_pred CeEEEEEccchhHH-hhhccccceee
Q 003163 568 SLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 568 ~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
.| ||++|||++++ .+|+++..+.+
T Consensus 519 ~t-viivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 519 KT-AFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp CE-EEEECSCHHHHHHHCSEEEECEE
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 87 99999999887 57888877765
No 47
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=6.6e-17 Score=197.92 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=108.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhc-----cc-cccccccc---ccccch------------
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----KS-GLHILSSE---YAKVPW------------ 497 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-----q~-G~~vpa~~---~~~i~~------------ 497 (843)
+++.++++++|+ ..|++++|+||||||||||||+|++..+.+ .. -.+++... ...+..
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~ 525 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTK 525 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHH
Confidence 567899999999 899999999999999999999996321110 00 01222100 001111
Q ss_pred --HHHHHhhcCc-hhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEE
Q 003163 498 --FDSVFADIGD-EQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 573 (843)
Q Consensus 498 --~~~i~~~ig~-~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vli 573 (843)
+..++..+|. ........+++|+++++...+ .+++.+|++|||||||+|||+.....+. .++.. .|.| ||+
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~-~~L~~---~g~t-vIi 600 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLV-NYLNT---CGIT-SIT 600 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHH-HHHHH---SCSE-EEE
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHH-HHHHh---CCCE-EEE
Confidence 2234556676 355677788999887766555 4668999999999999999997666654 44443 5787 999
Q ss_pred EccchhHH-hhhccccceeeeEEE
Q 003163 574 TTHHGELK-TLKYSNDFFENACME 596 (843)
Q Consensus 574 tTHd~el~-~~a~~~~~v~ng~v~ 596 (843)
+|||.++. .+|+++..+.+|.+.
T Consensus 601 vSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 601 ISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EECCHHHHHHhCCEEEEEECCeee
Confidence 99998877 689999999999985
No 48
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.69 E-value=9.4e-17 Score=189.40 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=104.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------cccccccc-cccchHH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEY-AKVPWFD 499 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------~~vpa~~~-~~i~~~~ 499 (843)
..++++++|+ ++|++++|+||||||||||+|+|+++..... .| .++|.... ....+.+
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 4699999999 9999999999999999999999976532111 01 12222100 0001122
Q ss_pred HH------------------HhhcCchhhHhh-----------hhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 500 SV------------------FADIGDEQSLSQ-----------SLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 500 ~i------------------~~~ig~~q~i~~-----------~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
++ ....+..+.+.. ...++|+++++.. .+.+++.+|+++||||||+|||+
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 22 112222222211 1156787766554 44567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+ ...+..+.+ +.| +|++||+.+....||++..+.+|++..++
T Consensus 517 ~~~~~i-~~~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 517 ENEYLV-QEALDRLMD-GRT-VLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp HHHHHH-HHHHHHHHT-TSE-EEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHHhc-CCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 766665 455566655 777 99999999888889999999999987653
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.69 E-value=7.4e-17 Score=188.11 Aligned_cols=147 Identities=17% Similarity=0.062 Sum_probs=100.4
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-------ccccccccccc--ccch----------------
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEYA--KVPW---------------- 497 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-------~G~~vpa~~~~--~i~~---------------- 497 (843)
.+..++|. ..|++++|+||||||||||||+|+++..... .-.++|..... ...+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~ 380 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNF 380 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHH
Confidence 34444555 6889999999999999999999976532211 01133321110 1111
Q ss_pred -HHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-hcCCeEEEEE
Q 003163 498 -FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIAT 574 (843)
Q Consensus 498 -~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~-~~g~t~vlit 574 (843)
...++..++..+.......++|+++++...+ .+++.+|+||||||||+|||+.....+. .++..+. +.|.+ ||++
T Consensus 381 ~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~-~~l~~l~~~~g~t-vi~v 458 (538)
T 1yqt_A 381 YKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKT-ALVV 458 (538)
T ss_dssp HHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHHTCE-EEEE
T ss_pred HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhCCCE-EEEE
Confidence 1122334555555666778889877665554 5678999999999999999997777775 4555554 56887 9999
Q ss_pred ccchhHH-hhhccccceee
Q 003163 575 THHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 575 THd~el~-~~a~~~~~v~n 592 (843)
|||.++. .+|+++..+.+
T Consensus 459 sHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 459 EHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp CSCHHHHHHHCSEEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEeC
Confidence 9998887 58888887764
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=6e-17 Score=191.17 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=103.1
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccc--------------------------------ccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH--------------------------------ILS 489 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~--------------------------------vpa 489 (843)
.++.+++ . ..|++++|+||||||||||||+|+++.... .|.. ++.
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4788888 6 789999999999999999999997654221 1110 000
Q ss_pred cc---c----cc----------cchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 490 SE---Y----AK----------VPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 490 ~~---~----~~----------i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
.. . .. ......++..+|..+......+++|+++++...+ .+++.+|++|||||||+|||+..
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 00 0 00 0012234555666666677788899877665555 56789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
...+. .+++.+.+.|.| ||++|||+++. .+|+++..+.+
T Consensus 264 ~~~l~-~~L~~l~~~g~t-vIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 264 RLKVA-RVIRRLANEGKA-VLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecChHHHHhhCCEEEEECC
Confidence 77665 566777767887 99999998876 57887766643
No 51
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.68 E-value=8.2e-17 Score=189.44 Aligned_cols=153 Identities=10% Similarity=0.060 Sum_probs=105.2
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccc-cccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY-AKVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~-~~i~~~ 498 (843)
+.++++++|+ ++|++++|+||||||||||+|+|+++.-.. .| .++|.... ....+.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVA 434 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHH
Confidence 6799999999 899999999999999999999997653211 11 12222100 000112
Q ss_pred HHH----------------HhhcCchhhHhh-----------hhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChh
Q 003163 499 DSV----------------FADIGDEQSLSQ-----------SLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 499 ~~i----------------~~~ig~~q~i~~-----------~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
+++ +...+..+.+.. ...++|+++++.. .+.+++.+|+++||||||+|+|+.
T Consensus 435 eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b60_A 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 222 122222222222 1246787765554 445678999999999999999997
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
....+. ..+..+.+ |.| +|++||+.+....||++..+.+|++...
T Consensus 515 ~~~~i~-~~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 515 SERAIQ-AALDELQK-NRT-SLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp HHHHHH-HHHHHHHT-TSE-EEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred HHHHHH-HHHHHHhC-CCE-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 777664 55555654 787 9999999988888999999999998754
No 52
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.68 E-value=8.2e-17 Score=189.42 Aligned_cols=152 Identities=10% Similarity=0.084 Sum_probs=104.4
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------cccccccccc--cch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VPW 497 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~--i~~ 497 (843)
+.++++++++ +.|++++|+||||||||||+|+|.++.-.. .| .++|. +..- ..+
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQ-NVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CCEEEECCEEhhhCCHHHHhcCeEEEcC-CCccccccH
Confidence 6799999999 899999999999999999999996653211 11 12222 1000 011
Q ss_pred HHHH----------------HhhcCchhhHhh-----------hhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCCh
Q 003163 498 FDSV----------------FADIGDEQSLSQ-----------SLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 498 ~~~i----------------~~~ig~~q~i~~-----------~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
.+++ ....+..+.+.. ...++|+++++. ..+.+++.+|+++||||||+|+|+
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 1111 112222222221 224678776555 455567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.....+. ..+..+.+ |.| +|++||+.+....||++..+.+|++..+
T Consensus 514 ~~~~~i~-~~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 514 ESERAIQ-AALDELQK-NKT-VLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred HHHHHHH-HHHHHHcC-CCE-EEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 7776664 45555554 787 9999999988889999999999998754
No 53
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.68 E-value=7.7e-17 Score=189.55 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=104.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------cccccccccccc--cch
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYAK--VPW 497 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~~vpa~~~~~--i~~ 497 (843)
+..++++++|+ ++|++++|+||||||||||+|+|.++.-... .-.++|. +..- -.+
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-~~~l~~~tv 431 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ-DNILFSDTV 431 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECS-SCCCCSSBH
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeC-CCccCcccH
Confidence 45799999999 8999999999999999999999965432111 0012222 1000 011
Q ss_pred HHHHH---------------hhcCchhhHh-----------hhhhhhhHHhHHHHH-HHHhCCCCcEEEEecCCCCCChh
Q 003163 498 FDSVF---------------ADIGDEQSLS-----------QSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPL 550 (843)
Q Consensus 498 ~~~i~---------------~~ig~~q~i~-----------~~lstfS~~~~~l~~-il~~a~~p~LLLLDEP~sGlDp~ 550 (843)
.+++. ...+..+.+. .....+|+++++... +.+++.+|+++||||||+|+||.
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 22221 1112222121 122467877665544 45678999999999999999996
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 551 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 551 e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
....+ ...+..+. .+.| +|++||+.+....||++..+.+|++..++
T Consensus 512 ~~~~i-~~~l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 512 SESII-QEALDVLS-KDRT-TLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHH-HHHHHHHT-TTSE-EEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred HHHHH-HHHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 65555 45555554 4676 99999999988889999999999997654
No 54
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=9.3e-17 Score=189.59 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=105.4
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------cccccccc-cccchH
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEY-AKVPWF 498 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------~~vpa~~~-~~i~~~ 498 (843)
+..++++++|+ ++|++++|+||||||||||+|+|.++.-... .| .++|.... ....+.
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 446 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHH
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHH
Confidence 45789999999 8999999999999999999999965432111 00 12222100 000112
Q ss_pred HHH---------------HhhcCchhhHhh-----------hhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSV---------------FADIGDEQSLSQ-----------SLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i---------------~~~ig~~q~i~~-----------~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++ ....+..+.+.. ....+|+++++.. .+.+++.+|+++||||||+|+|+..
T Consensus 447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 222 111122222221 1246787766554 4456789999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
...+. ..+..+. .|.| +|++||+.+....||++..+.+|++...+
T Consensus 527 ~~~i~-~~l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 527 EKSIQ-AAMWKLM-EGKT-SIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp HHHHH-HHHHHHH-TTSE-EEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred HHHHH-HHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 77775 4555554 4787 99999999988889999999999987543
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.68 E-value=8.1e-17 Score=187.63 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=98.6
Q ss_pred eeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccc------------ccc------------cc------ccc
Q 003163 445 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------------ILS------------SE------YAK 494 (843)
Q Consensus 445 ~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~------------vpa------------~~------~~~ 494 (843)
+-++.....|++++|+||||||||||||+|+++.... .|.. +.. .. ...
T Consensus 16 l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 94 (538)
T 3ozx_A 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQY 94 (538)
T ss_dssp EECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSC
T ss_pred ecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccch
Confidence 3334444789999999999999999999997653221 1111 000 00 000
Q ss_pred c---------------------chHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhH
Q 003163 495 V---------------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEG 552 (843)
Q Consensus 495 i---------------------~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~ 552 (843)
+ .....++..++.........+++|+++++...| .+++.+|++|||||||+|||+...
T Consensus 95 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~ 174 (538)
T 3ozx_A 95 VEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174 (538)
T ss_dssp TTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred hhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 0 012234556666666677788999887766555 466899999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003163 553 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 553 ~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~n 592 (843)
..+. .+++.+.+ |.| ||++|||+++. .+|+++..+.+
T Consensus 175 ~~l~-~~l~~l~~-g~t-ii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 175 MNMA-KAIRELLK-NKY-VIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHH-HHHHHHCT-TSE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHH-HHHHHHhC-CCE-EEEEEeChHHHHhhCCEEEEecC
Confidence 7775 56666765 887 99999998877 46776655543
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.68 E-value=8.8e-17 Score=189.74 Aligned_cols=147 Identities=17% Similarity=0.074 Sum_probs=99.8
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-------cccccccccc--cccchH---------------
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEY--AKVPWF--------------- 498 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-------~G~~vpa~~~--~~i~~~--------------- 498 (843)
.+..++++ ..|++++|+||||||||||||+|+++..... .-.++|.... ....+.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 34555555 6889999999999999999999976532211 0112332110 011111
Q ss_pred --HHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH-hcCCeEEEEE
Q 003163 499 --DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIAT 574 (843)
Q Consensus 499 --~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~-~~g~t~vlit 574 (843)
..++..++..+......+++|+++++...+ .+++.+|+||||||||+|||+.....+. .++..+. +.|.| ||++
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~t-vi~v 528 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS-RAIRHLMEKNEKT-ALVV 528 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH-HHHHHHHHHTTCE-EEEE
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCE-EEEE
Confidence 122334455555566677889877655544 5678999999999999999997777775 5556664 56887 9999
Q ss_pred ccchhHH-hhhccccceee
Q 003163 575 THHGELK-TLKYSNDFFEN 592 (843)
Q Consensus 575 THd~el~-~~a~~~~~v~n 592 (843)
|||.++. .+|+++..+.+
T Consensus 529 sHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 529 EHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp CSCHHHHHHHCSEEEEEEE
T ss_pred eCCHHHHHHhCCEEEEEcC
Confidence 9998887 58888877764
No 57
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=7.8e-17 Score=189.85 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=105.7
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----c---------------ccccccccccc--cc
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----S---------------GLHILSSEYAK--VP 496 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~---------------G~~vpa~~~~~--i~ 496 (843)
+++.++++++|+ ++|++++|+||||||||||+|+|.++.-... . -.++|. +..- -.
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~t 432 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ-ETVLFSGT 432 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECS-SCCCCSEE
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECC-CCcCcCcc
Confidence 456799999999 8999999999999999999999965432111 0 012222 1000 01
Q ss_pred hHHHHH---------------hhcCchhhH-----------hhhhhhhhHHhHHH-HHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSVF---------------ADIGDEQSL-----------SQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i~---------------~~ig~~q~i-----------~~~lstfS~~~~~l-~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++. ...+..+.+ ......+|+++++. ..+.+++.+|+++||||||+|+|+
T Consensus 433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 112221 111111111 12224677766555 455567899999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+.. .+..+. .|.| +|++||+.+....||++..+.+|++..++
T Consensus 513 ~~~~~i~~-~l~~~~-~~~t-vi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 513 ITEKRILD-GLKRYT-KGCT-TFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHH-HHHHHS-TTCE-EEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHHhC-CCCE-EEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 77777654 445443 4787 99999999998899999999999997653
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.67 E-value=1.2e-16 Score=190.98 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=68.6
Q ss_pred hhhhhhhhHHhHHHHHHH-HhCCC---CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 512 SQSLSTFSGHLKQIGNII-SQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il-~~a~~---p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
.....++|+++++...++ +++.+ |+||||||||+||||.....+. .++..+.+.|.| ||+||||+++..+|+++
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~i 615 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT-VLVIEHNLDVIKTADYI 615 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEE
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHhCCEE
Confidence 345578898887766665 44444 5699999999999998777775 566778877887 99999999998889998
Q ss_pred cce------eeeEEEEec
Q 003163 588 DFF------ENACMEFDE 599 (843)
Q Consensus 588 ~~v------~ng~v~fd~ 599 (843)
..+ .+|.+.++.
T Consensus 616 ~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 616 IDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp EEEESSSGGGCCEEEEEE
T ss_pred EEecCCcCCCCCEEEEec
Confidence 888 789988764
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.9e-17 Score=190.47 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=99.5
Q ss_pred ceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccc------------cccc------------c--------
Q 003163 444 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------------ILSS------------E-------- 491 (843)
Q Consensus 444 V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~------------vpa~------------~-------- 491 (843)
+...+..-..|++++|+||||||||||||+|+++.... .|.. +... .
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 33333333689999999999999999999997653221 1211 0000 0
Q ss_pred -ccc-----------c------------chHHHHHhhcCchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCC
Q 003163 492 -YAK-----------V------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 492 -~~~-----------i------------~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sG 546 (843)
... + .....++..++.........+++|+++++...+ .+++.+|++|||||||+|
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~ 251 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence 000 0 012234455666666677778899877666555 466899999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee
Q 003163 547 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE 591 (843)
Q Consensus 547 lDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~-~~a~~~~~v~ 591 (843)
|||.....+. .+++.+.+.|.+ ||++||++++. .+|+++..+.
T Consensus 252 LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 252 LDVKQRLNAA-QIIRSLLAPTKY-VICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp CCHHHHHHHH-HHHHGGGTTTCE-EEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEe
Confidence 9997777764 567777777887 99999998777 5777776664
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.64 E-value=2e-16 Score=193.68 Aligned_cols=91 Identities=20% Similarity=0.094 Sum_probs=68.0
Q ss_pred HhhcCchhh--HhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 502 FADIGDEQS--LSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 502 ~~~ig~~q~--i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+..+|.... .....+++||++++...+ .+++.+|+||||||||+|||+.....+ .+.+.+.+.+ ||++|||.
T Consensus 884 Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~~g~t-VIiISHD~ 958 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG-VIIITHSA 958 (986)
T ss_dssp HHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHSCSSE-EEEECSCH
T ss_pred HHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHHhCCE-EEEEECCH
Confidence 444555432 355677899877655544 567899999999999999999665444 4445566776 99999999
Q ss_pred hHH-hhhccccceeeeEEEE
Q 003163 579 ELK-TLKYSNDFFENACMEF 597 (843)
Q Consensus 579 el~-~~a~~~~~v~ng~v~f 597 (843)
++. .+|+++..+.+|.+..
T Consensus 959 e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 959 EFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp HHHTTTCCEEECCBTTBCCC
T ss_pred HHHHHhCCEEEEEECCEEEE
Confidence 887 6899999998888754
No 61
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.63 E-value=5e-17 Score=161.38 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=77.2
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhh-h---cccccccccccccccchHHHHH----------hhcCchhhH
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-M---AKSGLHILSSEYAKVPWFDSVF----------ADIGDEQSL 511 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~-~---~q~G~~vpa~~~~~i~~~~~i~----------~~ig~~q~i 511 (843)
+++|+ ..|++++|+||||||||||+|++..-.. . ...|...+. .+ ...+....+ ...|... +
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 77 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDD-EN-DQTVTGAAFDVLHYIVSKRLQLGKLT-V 77 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSS-TT-CGGGHHHHHHHHHHHHHHHHHTTCCE-E
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCc-cc-chhhHHHHHHHHHHHHHHHHhCCCeE-E
Confidence 46667 7889999999999999999996421100 0 001211111 11 111111111 1111110 0
Q ss_pred hhhhhhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh----------------hHHHHHHHHHHHHHhcCCeEEEEE
Q 003163 512 SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL----------------EGTALGMSLLEAFAESGSLLTIAT 574 (843)
Q Consensus 512 ~~~lstfS~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~----------------e~~al~~~lle~L~~~g~t~vlit 574 (843)
.......++++++ +..+.+++.+|.+|+|||||+|+|+. ....+ ..++..+.+.|.+ +|++
T Consensus 78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~g~t-vi~v 155 (171)
T 4gp7_A 78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQREGFR-YVYI 155 (171)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHHTCS-EEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhcCCc-EEEE
Confidence 1111223555554 45555678999999999999999997 33444 4555556667888 9999
Q ss_pred ccchhHHhh
Q 003163 575 THHGELKTL 583 (843)
Q Consensus 575 THd~el~~~ 583 (843)
|||++....
T Consensus 156 tH~~~~~~~ 164 (171)
T 4gp7_A 156 LNSPEEVEE 164 (171)
T ss_dssp ECSHHHHHH
T ss_pred eCCHHHhhh
Confidence 999988743
No 62
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.57 E-value=2e-15 Score=167.87 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=65.2
Q ss_pred hhhhhhHHhHHHHHH-HHhC------CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 514 SLSTFSGHLKQIGNI-ISQS------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 514 ~lstfS~~~~~l~~i-l~~a------~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
..+++|+++++...+ .+++ .+|+++||||||+||||.....+. .++..+.+.|.| ||++||++++..++++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~t-vi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKV-IVFITHDREFSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSE-EEEEESCHHHHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCE-EEEEecchHHHHhCCE
Confidence 445788877766554 3444 699999999999999997777764 566777777887 9999999999888999
Q ss_pred ccceeeeEEE
Q 003163 587 NDFFENACME 596 (843)
Q Consensus 587 ~~~v~ng~v~ 596 (843)
+..+.+|.+.
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999988875
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=8e-15 Score=177.90 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=69.3
Q ss_pred HhhhhhhhhHHhHHHHHHHH-hCCC---CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 511 LSQSLSTFSGHLKQIGNIIS-QSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~il~-~a~~---p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+...++|+++++...++. ++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|++
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~t-VIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNT-VIAVEHKMQVVAASDW 801 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 34566788887776666654 4553 7999999999999997777775 667778888987 9999999998888999
Q ss_pred ccce------eeeEEEEec
Q 003163 587 NDFF------ENACMEFDE 599 (843)
Q Consensus 587 ~~~v------~ng~v~fd~ 599 (843)
+..+ .+|.+.++.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQG 820 (842)
T ss_dssp EEEECSSSGGGCCSEEEEE
T ss_pred EEEECCCCCCCCCEEEEEc
Confidence 8888 588887653
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.56 E-value=4.6e-15 Score=166.50 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=74.6
Q ss_pred hhHHhHH-HHHHHHhCCCC--cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce----
Q 003163 518 FSGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF---- 590 (843)
Q Consensus 518 fS~~~~~-l~~il~~a~~p--~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v---- 590 (843)
+|+++++ +..++.++.+| ++|||||||+|||+.....+. .++..+. .|++ ||+|||++++..+|+++..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~-~~L~~l~-~~~~-vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLA-DTRQ-VLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHH-HHHHHHT-TTSE-EEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHh-CCCE-EEEEeCcHHHHhhcCeEEEEEEec
Confidence 4876655 44445667788 999999999999997777775 4555565 4777 99999999999899998888
Q ss_pred eeeEEEEecccceeeEEEecCCCCCChHHHHHHHc-C-CCHHHHHHHHHHH
Q 003163 591 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL-G-LPGIVVQNARQLY 639 (843)
Q Consensus 591 ~ng~v~fd~~~l~ptY~l~~G~~g~S~a~~iA~~~-g-l~~~ii~~A~~~~ 639 (843)
.+|.+......+ .....-.+||+.+ | +.+..+..|++++
T Consensus 373 ~~G~~~~~~~~l----------~~~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 373 EDGRTVSHVRLL----------TGDERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp ETTEEEEEEEEC----------CSHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred cCCceEEEEEEC----------CchhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 677665432211 1111234456655 3 4566666666654
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.54 E-value=1e-14 Score=178.40 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=69.1
Q ss_pred hhhhhhhhHHhHHHHHHH-HhCC---CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 512 SQSLSTFSGHLKQIGNII-SQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il-~~a~---~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
.+...++||++++...++ +++. +|+|+||||||+|||+.+...+. .++..+.+.|.| ||++|||+++...||++
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T-VIvI~HdL~~i~~ADrI 877 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT-VIVIEHNLDVIKNADHI 877 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEE
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHhCCEE
Confidence 345578898877666555 4444 45899999999999997777775 667778888997 99999999999889999
Q ss_pred cce------eeeEEEEec
Q 003163 588 DFF------ENACMEFDE 599 (843)
Q Consensus 588 ~~v------~ng~v~fd~ 599 (843)
..+ .+|.+.+.+
T Consensus 878 ivLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 878 IDLGPEGGKEGGYIVATG 895 (916)
T ss_dssp EEEESSSGGGCCEEEEEE
T ss_pred EEecCCCCCCCCEEEEEc
Confidence 888 789988765
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.53 E-value=1.8e-14 Score=175.95 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=68.5
Q ss_pred HhhhhhhhhHHhHHHHHHH-HhCCC---CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 511 LSQSLSTFSGHLKQIGNII-SQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~il-~~a~~---p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+...++|+++++...++ +++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|++
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T-VIvisHdl~~i~~aDr 934 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT-VIVIEHNLDVIKTSDW 934 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 4456678888776655554 55644 5999999999999997777775 566778888887 9999999998888999
Q ss_pred ccce------eeeEEEEec
Q 003163 587 NDFF------ENACMEFDE 599 (843)
Q Consensus 587 ~~~v------~ng~v~fd~ 599 (843)
+..+ .+|.+.++.
T Consensus 935 IivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp EEEEESSSTTSCSEEEEEE
T ss_pred EEEECCCcCCCCCEEEEec
Confidence 8888 578887653
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.53 E-value=1.6e-14 Score=175.79 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=67.5
Q ss_pred HhhhhhhhhHHhHHHHHHH-HhCCC---CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 511 LSQSLSTFSGHLKQIGNII-SQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 511 i~~~lstfS~~~~~l~~il-~~a~~---p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
+.+...++|+++++...++ +++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|++
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T-VIvisHdl~~i~~aDr 916 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT-VLVIEHNLDVIKTADY 916 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 4456678888776655554 55644 5999999999999998777775 566778888887 9999999998888888
Q ss_pred ccce------eeeEEEEe
Q 003163 587 NDFF------ENACMEFD 598 (843)
Q Consensus 587 ~~~v------~ng~v~fd 598 (843)
+..+ .+|.+.++
T Consensus 917 IivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp EEEECSSSTTSCCSEEEE
T ss_pred EEEEcCCCCCCCCEEEEe
Confidence 8888 57777654
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=2.9e-14 Score=181.38 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=101.9
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc-----cc---------------cccccccccc--cchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------LHILSSEYAK--VPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-----~G---------------~~vpa~~~~~--i~~~ 498 (843)
.+++++++|+ ++|++++|+||||||||||+++|.++.-... .| .++|. +..- -.+.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q-~~~l~~~ti~ 481 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQ-EPVLFATTIA 481 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECS-SCCCCSSCHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcC-CCccCCccHH
Confidence 4699999999 9999999999999999999999965432111 00 12222 1100 0112
Q ss_pred HHHH---------------hhcCchhhHh-----------hhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhh
Q 003163 499 DSVF---------------ADIGDEQSLS-----------QSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLE 551 (843)
Q Consensus 499 ~~i~---------------~~ig~~q~i~-----------~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e 551 (843)
+++. ...+..+.+. ....++|+++++...+ .+++.+|++|||||||++||+..
T Consensus 482 eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 2221 1111111111 1223578776655544 56689999999999999999965
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 552 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 552 ~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.. .....++.+. .|.| +|++||+......||++..+.+|++...
T Consensus 562 ~~-~i~~~l~~~~-~~~t-~i~itH~l~~i~~~d~i~vl~~G~i~~~ 605 (1284)
T 3g5u_A 562 EA-VVQAALDKAR-EGRT-TIVIAHRLSTVRNADVIAGFDGGVIVEQ 605 (1284)
T ss_dssp HH-HHHHHHHHHH-TTSE-EEEECSCHHHHTTCSEEEECSSSCCCCE
T ss_pred HH-HHHHHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 44 4455555544 4787 9999999998888999999999988644
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.49 E-value=2.1e-14 Score=182.61 Aligned_cols=154 Identities=14% Similarity=0.081 Sum_probs=102.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcc--------------------ccccccccccc--ccchH
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA--KVPWF 498 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q--------------------~G~~vpa~~~~--~i~~~ 498 (843)
..++++++|+ +.|++++|+||||||||||+++|.++.-... .-.++|. +.. ...+.
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ-EPILFDCSIA 1124 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES-SCCCCSSBHH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC-CCccccccHH
Confidence 3689999999 8999999999999999999999965432111 0112332 110 00111
Q ss_pred HHH-----------------HhhcCchhhHh-----------hhhhhhhHHhHHHH-HHHHhCCCCcEEEEecCCCCCCh
Q 003163 499 DSV-----------------FADIGDEQSLS-----------QSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 499 ~~i-----------------~~~ig~~q~i~-----------~~lstfS~~~~~l~-~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+++ ....+..+.+. ..-..+||+.++.. .+.+++.+|++|||||||+|+|+
T Consensus 1125 eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp HHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred HHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 121 11111111111 11235787665554 44566889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.....+ ...++.+ ..|+| +|++||+++....||++..+.+|++...+
T Consensus 1205 ~~~~~i-~~~l~~~-~~~~t-vi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1205 ESEKVV-QEALDKA-REGRT-CIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHH-HHHHHHH-SSSSC-EEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred HHHHHH-HHHHHHh-CCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 665555 4455543 45787 99999999988889999999999987543
No 70
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.42 E-value=4.6e-13 Score=170.82 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=103.1
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccc--ccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~--~i~ 496 (843)
+.++++|++|+ +.|+.++|+||+|||||||+++|.+..-.. .| .++|. +.. .-.
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~idG~~i~~~~~~~lr~~i~~v~Q-~~~Lf~~T 507 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKITIDGVDVRDINLEFLRKNVAVVSQ-EPALFNCT 507 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEEETTEETTTSCHHHHHHHEEEECS-SCCCCSEE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc-cCcccCCCccchhccHHHHhhcccccCC-cceeeCCc
Confidence 46899999999 999999999999999999999995432111 11 12222 100 001
Q ss_pred hHHHH---------------HhhcCchhhHhh---h--------hhhhhHHh-HHHHHHHHhCCCCcEEEEecCCCCCCh
Q 003163 497 WFDSV---------------FADIGDEQSLSQ---S--------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 549 (843)
Q Consensus 497 ~~~~i---------------~~~ig~~q~i~~---~--------lstfS~~~-~~l~~il~~a~~p~LLLLDEP~sGlDp 549 (843)
+.+++ ....+..+.+.. + -..+||++ +|+..+.+...+|+++|||||||++|+
T Consensus 508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 12222 111122222221 1 12466655 455555677999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003163 550 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 550 ~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd 598 (843)
.....+ ...+..+. +|.| +|++||.......||++..+.+|++...
T Consensus 588 ~te~~i-~~~l~~~~-~~~T-~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 588 ESEGIV-QQALDKAA-KGRT-TIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp TTHHHH-HHHHHHHH-TTSE-EEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred HHHHHH-HHHHHHHh-CCCE-EEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 765444 44445444 4677 8999999999999999999999999764
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.41 E-value=6.6e-14 Score=140.42 Aligned_cols=126 Identities=12% Similarity=0.049 Sum_probs=73.5
Q ss_pred EEEEEccCCCCchhhhhcccchhhhcccccccccc----cccccchH-------HHHHhhcCch--hhHhhhhhhhhHHh
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS----EYAKVPWF-------DSVFADIGDE--QSLSQSLSTFSGHL 522 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~----~~~~i~~~-------~~i~~~ig~~--q~i~~~lstfS~~~ 522 (843)
.++|+||||||||||+|+|++..-..-.|...... ....+++. ..++..++.. ..+......+|+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47999999999999999997654221122211100 01111111 0111111111 12334456788887
Q ss_pred HHHHHHHH------hCCCCcEEEEec--CCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEcc---chhHH-hhhcc
Q 003163 523 KQIGNIIS------QSTSQSLVLLDE--IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH---HGELK-TLKYS 586 (843)
Q Consensus 523 ~~l~~il~------~a~~p~LLLLDE--P~sGlDp~e~~al~~~lle~L~~~g~t~vlitTH---d~el~-~~a~~ 586 (843)
++...++. ++.+|+++|||| |++++|+.....+ .+.+.+.+.+ +|++|| +.++. .++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~~~~~-~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHDPNVN-VVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTCTTSE-EEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhcCCCe-EEEEEccCCCchHHHHHHhc
Confidence 76655554 589999999999 9999999554444 3334445665 777775 66666 45554
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.41 E-value=4.5e-13 Score=146.20 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred hhhhhHHhHHHHHHHHh-C----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc--
Q 003163 515 LSTFSGHLKQIGNIISQ-S----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN-- 587 (843)
Q Consensus 515 lstfS~~~~~l~~il~~-a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~-- 587 (843)
.+.+|+++++...++.. + .+|++|||||||++|||.....+. .++..+. .+.+ +|+|||+.++..+|++.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~-vi~~tH~~~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFK-RLLKENS-KHTQ-FIVITHNKIVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHH-HHHHHHT-TTSE-EEEECCCTTGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCe-EEEEECCHHHHhhCceEEE
Confidence 45778887776666543 2 688999999999999997777765 4555554 4676 99999998877888765
Q ss_pred cceeeeEEE
Q 003163 588 DFFENACME 596 (843)
Q Consensus 588 ~~v~ng~v~ 596 (843)
+.+.+|.-.
T Consensus 294 v~~~~g~s~ 302 (322)
T 1e69_A 294 VTMVNGVSA 302 (322)
T ss_dssp EEESSSCEE
T ss_pred EEEeCCEEE
Confidence 445555443
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.39 E-value=5.1e-14 Score=144.81 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=69.5
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccc------c-ccccccchHH-----HH-------Hh
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL------S-SEYAKVPWFD-----SV-------FA 503 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vp------a-~~~~~i~~~~-----~i-------~~ 503 (843)
.+++++ ..|++++|+||||||||||||+|+++ .. ..|.... . .....++++. ++ +.
T Consensus 14 ~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 455554 57889999999999999999999877 32 2232210 0 0011122111 11 00
Q ss_pred hcC---chhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 504 DIG---DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 504 ~ig---~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
.+. ....+...+..--|+.+++..+.+++.+|++|||||||+| ....+ ..++..+ +.|.+ || +|||.++
T Consensus 89 ~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l-~~~l~~l-~~g~t-ii-vtHd~~~ 160 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQM-KMFLTRL-GFGSK-MV-VTGDITQ 160 (208)
T ss_dssp HHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHH-HHHHTTB-CTTCE-EE-EEEC---
T ss_pred HHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHH-HHHHHHh-cCCCE-EE-EECCHHH
Confidence 000 0111111111101455566666677899999999999999 33333 3445555 55776 88 9999887
Q ss_pred Hhh
Q 003163 581 KTL 583 (843)
Q Consensus 581 ~~~ 583 (843)
...
T Consensus 161 ~~~ 163 (208)
T 3b85_A 161 VDL 163 (208)
T ss_dssp ---
T ss_pred HhC
Confidence 643
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.39 E-value=8.4e-13 Score=145.11 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=56.9
Q ss_pred hhhhhHHhHHH-------HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 515 LSTFSGHLKQI-------GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 515 lstfS~~~~~l-------~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
+..+|+++++. ..+.+++.+|++|||||||+||||.....+. .++..+...|.+ ||++||+.++..+|+++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~-vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQ-VILVSHDEELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHH-HHHHHTGGGSSE-EEEEESCGGGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEEChHHHHHhCCEE
Confidence 45678887763 3334557899999999999999997777765 556666666776 99999998888888776
Q ss_pred ccee
Q 003163 588 DFFE 591 (843)
Q Consensus 588 ~~v~ 591 (843)
..+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.37 E-value=6.2e-13 Score=137.62 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=44.0
Q ss_pred CCCCcEEEEecCCCCCC----hhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH----------hhh-cccccee
Q 003163 532 STSQSLVLLDEIGAGTN----PLEGTALGMSLLEAFAESGSLLTIATTHHGELK----------TLK-YSNDFFE 591 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlD----p~e~~al~~~lle~L~~~g~t~vlitTHd~el~----------~~a-~~~~~v~ 591 (843)
..+|++++||||++++| |.........++..+++.|+| ||++||+.... .+| +++..+.
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~t-ii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 46899999999999986 345555456788888888997 99999997665 466 6666554
No 76
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.37 E-value=9.4e-13 Score=168.00 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=100.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---------------------ccccccccccc--c
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 496 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---------------------~~vpa~~~~~i--~ 496 (843)
+.+|+++++|+ ++|+.++|+||+|||||||+++|.++.-.. .| .++|. +..-+ .
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~-~G~I~iDG~di~~i~~~~lR~~i~~V~Q-dp~LF~gT 1168 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL-GGEIFIDGSEIKTLNPEHTRSQIAIVSQ-EPTLFDCS 1168 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS-SSEEEETTEETTTBCHHHHHTTEEEECS-SCCCCSEE
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC-CCEEEECCEEhhhCCHHHHHhheEEECC-CCEeeCcc
Confidence 34699999999 899999999999999999999995432111 11 12332 11000 0
Q ss_pred hHHHH-----------------HhhcCchhhHhh---hh--------hhhhHHhHH-HHHHHHhCCCCcEEEEecCCCCC
Q 003163 497 WFDSV-----------------FADIGDEQSLSQ---SL--------STFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGT 547 (843)
Q Consensus 497 ~~~~i-----------------~~~ig~~q~i~~---~l--------stfS~~~~~-l~~il~~a~~p~LLLLDEP~sGl 547 (843)
+-+++ ....+..+.+.. ++ ..+|++.+| +..+.+++.+|++||||||||++
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 11111 111222222211 11 347776655 45555678999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 548 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 548 Dp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
|+.. .......++.+. .++| +|+++|...-...||++..+.+|++...+
T Consensus 1249 D~~t-E~~Iq~~l~~~~-~~~T-vI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1249 DTES-EKVVQEALDRAR-EGRT-CIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp TSHH-HHHHHHHHTTTS-SSSE-EEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred CHHH-HHHHHHHHHHHc-CCCE-EEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence 9944 444333333322 4777 99999999988999999999999987543
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.5e-13 Score=157.12 Aligned_cols=131 Identities=13% Similarity=0.057 Sum_probs=80.9
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc-c-------------ccccccc-----cccchHHHH-----
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-L-------------HILSSEY-----AKVPWFDSV----- 501 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G-~-------------~vpa~~~-----~~i~~~~~i----- 501 (843)
++++. ..|++++|+||||||||||+|+|+++.... .| . ++|.... ..+...+++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccc
Confidence 46666 688999999999999999999997654321 12 1 2222100 000111111
Q ss_pred -------------HhhcCchhhHhhhhhhhhHHhH-HHHHHHH--hCCCCcE----EEEec-CCCCCChhhHHHHHHHHH
Q 003163 502 -------------FADIGDEQSLSQSLSTFSGHLK-QIGNIIS--QSTSQSL----VLLDE-IGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 502 -------------~~~ig~~q~i~~~lstfS~~~~-~l~~il~--~a~~p~L----LLLDE-P~sGlDp~e~~al~~~ll 560 (843)
+..+|...... ..++|++++ ++..+.+ ++.+|++ ||||| ||+|+|+. .. .+.
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~~---~l~ 281 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--LA---ELH 281 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--CH---HHH
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--HH---HHH
Confidence 11223222222 456777665 4555566 7889999 99999 99999996 22 233
Q ss_pred HHHHhcCCeEEEEEccchh------HH-hhhcc
Q 003163 561 EAFAESGSLLTIATTHHGE------LK-TLKYS 586 (843)
Q Consensus 561 e~L~~~g~t~vlitTHd~e------l~-~~a~~ 586 (843)
+.+.+.+.+ +|++||+.. +. .++++
T Consensus 282 ~l~~~~~~t-viiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 282 HIIEKLNVN-IMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHTTCC-EEEEECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHhCCC-EEEEEccCchhhhHHHHHHhccc
Confidence 444455787 899999866 33 57877
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.27 E-value=2e-12 Score=132.14 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=74.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcc-c------ccccccccccccchHHHHHhhcCch-hhHhhhhh---hhh-
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-S------GLHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFS- 519 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-~------G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~ls---tfS- 519 (843)
+.|++++|+||||||||||+++|++...... . ..++..........+..++..++.. +.+..++. .++
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 4789999999999999999999976433311 1 1122221110111122333333332 22222221 111
Q ss_pred HHh----HHHHHHHH-h---CCCCcEEEEecCCCCCChhh------------HHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 520 GHL----KQIGNIIS-Q---STSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 520 ~~~----~~l~~il~-~---a~~p~LLLLDEP~sGlDp~e------------~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
.+. ..+..++. . ..+|++|+||||++++|+.. ...+...+.+...+.|++ ||++||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~ 181 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQA 181 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeeccc
Confidence 111 11112221 1 45899999999999999831 124444455544566887 999999544
Q ss_pred H----H-hhhccccceee
Q 003163 580 L----K-TLKYSNDFFEN 592 (843)
Q Consensus 580 l----~-~~a~~~~~v~n 592 (843)
. . .+++.+..+.+
T Consensus 182 ~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 182 NGGHILAHSATLRVYLRK 199 (231)
T ss_dssp --------CCSEEEEEEE
T ss_pred CcchhhHhhceEEEEEEe
Confidence 3 3 45555555544
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.26 E-value=1.8e-13 Score=139.49 Aligned_cols=57 Identities=12% Similarity=-0.130 Sum_probs=42.2
Q ss_pred CCCCcEEEEecCCCCC----ChhhHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccce
Q 003163 532 STSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFF 590 (843)
Q Consensus 532 a~~p~LLLLDEP~sGl----Dp~e~~al~~~lle~L~-~~g~t~vlitTHd~el~-~~a~~~~~v 590 (843)
+.+|++++||||++|+ |+.....+ ..++..+. +.|.+ +|++|||++.+ .+|+++..+
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l-~~~l~~l~~~~g~t-vi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRL-DTARIELAAQGDFD-KVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHH-HHHHHHHHGGGGSS-EEEECSSHHHHHHHHHHHHC-
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhhhccCc-EEEECCCHHHHHHHHHHHHHh
Confidence 5689999999999998 56455555 45566666 45787 99999998877 578877654
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.21 E-value=8.6e-12 Score=133.72 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=83.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccc---cccccccccccchHHHH---HhhcCch-----
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSV---FADIGDE----- 508 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---~~vpa~~~~~i~~~~~i---~~~ig~~----- 508 (843)
+..++++++++ ..|++++|+||||+|||||+++|++...... | .++.. +...-.+...+ +..+...
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~-e~~~~~~~~r~~~~~~~~~~~~~~~l 98 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAML-EESVEETAEDLIGLHNRVRLRQSDSL 98 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEES-SSCHHHHHHHHHHHHTTCCGGGCHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeC-cCCHHHHHHHHHHHHcCCChhhcccc
Confidence 34567788877 8899999999999999999999976544321 3 12211 11100000111 0011000
Q ss_pred --------------hhH-h-hh--h----hhhh-HHhHHHHHHHHhCCCCcEEEEecCCC---C---CCh-hhHHHHHHH
Q 003163 509 --------------QSL-S-QS--L----STFS-GHLKQIGNIISQSTSQSLVLLDEIGA---G---TNP-LEGTALGMS 558 (843)
Q Consensus 509 --------------q~i-~-~~--l----stfS-~~~~~l~~il~~a~~p~LLLLDEP~s---G---lDp-~e~~al~~~ 558 (843)
+.+ . .. + ...+ .++++....++...+|++||||||++ + +|+ .....+. .
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~-~ 177 (296)
T 1cr0_A 99 KREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM-T 177 (296)
T ss_dssp HHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH-H
T ss_pred ccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH-H
Confidence 000 0 00 0 1112 34444444556778999999999999 4 344 3334444 3
Q ss_pred HHHHHH-hcCCeEEEEEccch-----------------------hHHhhhccccceeeeEE
Q 003163 559 LLEAFA-ESGSLLTIATTHHG-----------------------ELKTLKYSNDFFENACM 595 (843)
Q Consensus 559 lle~L~-~~g~t~vlitTHd~-----------------------el~~~a~~~~~v~ng~v 595 (843)
.+..+. +.|++ ||++||+. .+..+|+.+..+..+..
T Consensus 178 ~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 KLKGFAKSTGVV-LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHCCE-EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHhCCe-EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444554 55887 99999995 34468888888877664
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.16 E-value=5.3e-11 Score=121.20 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=74.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcc-cccccccccccccchHHHHHhhcCch-hhHh-hh--------------
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDE-QSLS-QS-------------- 514 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~-~~-------------- 514 (843)
..|++++|+||||+|||||++++++...... ...++.. +... ..+...+..++.. +... ..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT-EESR-DSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES-SSCH-HHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc-ccCH-HHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 4678999999999999999999974433211 1112221 1110 0011111112110 0000 00
Q ss_pred --hhhhhH-HhHHHHHHHHhCCCCc--EEEEecCCCCC--ChhhHHHHHHHHHHHHHhcCCeEEEEEccchh--------
Q 003163 515 --LSTFSG-HLKQIGNIISQSTSQS--LVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE-------- 579 (843)
Q Consensus 515 --lstfS~-~~~~l~~il~~a~~p~--LLLLDEP~sGl--Dp~e~~al~~~lle~L~~~g~t~vlitTHd~e-------- 579 (843)
....+. ++.+.........+|+ +|+||||++++ |+.....+...+.+...+.|++ ||++||+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~-vi~~~h~~~~~~~~~~~ 177 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFT-IYATSQYAITTSQAFGF 177 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEE-EEEEEC-----------
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCe-EEEEeccCccccccccc
Confidence 001122 2222222222234789 99999999877 9977777765554444566887 999999972
Q ss_pred -HHhhhccccceeee
Q 003163 580 -LKTLKYSNDFFENA 593 (843)
Q Consensus 580 -l~~~a~~~~~v~ng 593 (843)
+..+|+.+..+...
T Consensus 178 ~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 178 GVEHVADGIIRFRRM 192 (235)
T ss_dssp CHHHHCSEEEEEEEE
T ss_pred chheeeeEEEEEEEE
Confidence 44677777666543
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=1.6e-11 Score=142.60 Aligned_cols=151 Identities=16% Similarity=0.178 Sum_probs=88.4
Q ss_pred cCCccceeeEEE-e-cCCeEEEEEccCCCCchhhhhc--ccchhhhcccccccccccc--------cccchHHHHHhh--
Q 003163 439 ELAHPVPIDIFI-A-RKTRVLVITGPNTGGKTICLKT--VGLAVMMAKSGLHILSSEY--------AKVPWFDSVFAD-- 504 (843)
Q Consensus 439 ~~~~~V~~disL-~-~~g~i~~ItGPNGsGKTTLLK~--Igli~~~~q~G~~vpa~~~--------~~i~~~~~i~~~-- 504 (843)
+++..+++++++ + +.|++++|+||||||||||+++ +.++........++...+. ..+++..+-+..
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 445678999999 6 8899999999999999999999 4444332222223322110 111111111100
Q ss_pred ----cCchh--hHhhhhhhhh--HHhHHHHHHHHhCCCCcEEEEecCCC-----CCChhhHHHHHHHHHHHHHhcCCeEE
Q 003163 505 ----IGDEQ--SLSQSLSTFS--GHLKQIGNIISQSTSQSLVLLDEIGA-----GTNPLEGTALGMSLLEAFAESGSLLT 571 (843)
Q Consensus 505 ----ig~~q--~i~~~lstfS--~~~~~l~~il~~a~~p~LLLLDEP~s-----GlDp~e~~al~~~lle~L~~~g~t~v 571 (843)
+.... .....+..+. ..+.+....+. ..+|++|+||||++ ++|+.....+ ..++..+.+.|+| |
T Consensus 102 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~~g~t-v 178 (525)
T 1tf7_A 102 KLFILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQIGAT-T 178 (525)
T ss_dssp SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHHHTCE-E
T ss_pred cEEEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHHCCCE-E
Confidence 00000 0000011111 11112222221 25799999999997 4588666665 5778888888997 9
Q ss_pred EEEccchhH---------H-hhhccccceee
Q 003163 572 IATTHHGEL---------K-TLKYSNDFFEN 592 (843)
Q Consensus 572 litTHd~el---------~-~~a~~~~~v~n 592 (843)
|++||+.+. . .+|+++..+.+
T Consensus 179 l~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 179 VMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 999999875 2 34888888877
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.13 E-value=5.9e-12 Score=138.16 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=80.8
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhh--hH
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF--SG 520 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstf--S~ 520 (843)
++.++++. ..|++++|+|||||||||||++|+++... ..|...-. ....+. +.. ....++.+ .+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~-~~~e~~--------~~~---~~~~i~~~~ggg 226 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIE-DTEEIV--------FKH---HKNYTQLFFGGN 226 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEE-SSCCCC--------CSS---CSSEEEEECBTT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEEC-Ceeccc--------ccc---chhEEEEEeCCC
Confidence 67778887 77889999999999999999999654322 22322111 000100 000 00011111 23
Q ss_pred HhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeE
Q 003163 521 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 594 (843)
Q Consensus 521 ~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ng~ 594 (843)
..++.....++..+|+++|||||++ . + + ..+++.+...+.+ +|+|||+......+++...+.+|.
T Consensus 227 ~~~r~~la~aL~~~p~ilildE~~~---~-e---~-~~~l~~~~~g~~t-vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 227 ITSADCLKSCLRMRPDRIILGELRS---S-E---A-YDFYNVLCSGHKG-TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp BCHHHHHHHHTTSCCSEEEECCCCS---T-H---H-HHHHHHHHTTCCC-EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHhhhCCCEEEEcCCCh---H-H---H-HHHHHHHhcCCCE-EEEEEcccHHHHHhhhheehhcCC
Confidence 4455555566788999999999976 2 2 2 3355666554445 899999988778888887776553
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.12 E-value=1.6e-10 Score=117.19 Aligned_cols=125 Identities=18% Similarity=0.088 Sum_probs=69.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCch-hhHhhhh--hhhhH--H-hHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQSL--STFSG--H-LKQI 525 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~l--stfS~--~-~~~l 525 (843)
+.|++++|+||||+|||||++.++. .......++..........+..+...++.. +.+...+ ...+. + ...+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4678999999999999999999976 222222333331111111222333333321 1111111 11111 1 2233
Q ss_pred HHHHHhCC-CCcEEEEecCCCCCChhhH--------HHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 526 GNIISQST-SQSLVLLDEIGAGTNPLEG--------TALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 526 ~~il~~a~-~p~LLLLDEP~sGlDp~e~--------~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
..+.+++. +|++|++|||++++|+... ..+...+.+...+.+++ +|+++|...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-vi~~~h~~~ 157 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP-VIVINQVHF 157 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCC-EEEEECSSS
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeEEE
Confidence 44444555 4999999999999997321 22333333433456887 999999753
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=3.6e-11 Score=119.27 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhC
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 532 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a 532 (843)
.|+.++|+||||+|||||+++|+...... .|..+. .+. ...++..+ ...++..... .++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~-----~~~-~~~~~~~~---------~~~~~~~~~~--~~~~~~ 98 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGY-----FFD-TKDLIFRL---------KHLMDEGKDT--KFLKTV 98 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCC-----EEE-HHHHHHHH---------HHHHHHTCCS--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEE-----EEE-HHHHHHHH---------HHHhcCchHH--HHHHHh
Confidence 46789999999999999999996543211 121100 011 11111111 0111111100 222334
Q ss_pred CCCcEEEEecCCC-CCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 533 TSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 533 ~~p~LLLLDEP~s-GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
.+|++|+||||++ ++|+.....+ ..+++...+.|.+ +|+|||+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l-~~ll~~~~~~~~~-ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELI-SYIITYRYNNLKS-TIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHH-HHHHHHHHHTTCE-EEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHH-HHHHHHHHHcCCC-EEEEcCCC
Confidence 4899999999995 8998555544 5677777777887 89999974
No 86
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.10 E-value=6.9e-11 Score=125.82 Aligned_cols=126 Identities=9% Similarity=0.016 Sum_probs=69.6
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-----------ccccccccccccccchHHHH---H------------hhc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------KSGLHILSSEYAKVPWFDSV---F------------ADI 505 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-----------q~G~~vpa~~~~~i~~~~~i---~------------~~i 505 (843)
..|++++|+||||+|||||++.+++....+ ....|+.. +...-.+...+ - ..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~-e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEEC-CCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 578999999999999999999997533221 01123332 11110010111 0 111
Q ss_pred CchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCC--CCChhhH---HHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 506 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA--GTNPLEG---TALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 506 g~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~s--GlDp~e~---~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
+..+.....+..+|+++.+.. ..++.+|++|+||||++ ++|+... ..+...+.....+.|++ ||++||+...
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i--~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGL--KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHH--HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHHH--HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 111111122344555554433 34456899999999999 9998443 44443343333467887 9999998765
Q ss_pred H
Q 003163 581 K 581 (843)
Q Consensus 581 ~ 581 (843)
.
T Consensus 184 ~ 184 (279)
T 1nlf_A 184 A 184 (279)
T ss_dssp -
T ss_pred c
Confidence 4
No 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.06 E-value=6.2e-12 Score=141.85 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=82.5
Q ss_pred ccceeeEEEe-cCCe--------------------EEEEEccCCCCchhhhhcccchhhhccccc------------ccc
Q 003163 442 HPVPIDIFIA-RKTR--------------------VLVITGPNTGGKTICLKTVGLAVMMAKSGL------------HIL 488 (843)
Q Consensus 442 ~~V~~disL~-~~g~--------------------i~~ItGPNGsGKTTLLK~Igli~~~~q~G~------------~vp 488 (843)
+.+++++++. ..|+ +++|+||||+||||||++|.++..... |. +++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~-GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE-GAAKTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST-TSCCCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC-ceEEECCeecceeEEec
Confidence 4578888888 7777 999999999999999999976432111 11 111
Q ss_pred cccc-cccc------------hHHHHHhhcCchhhHhhhhhhhhHH--hHHHHHH-HHhCC----------CCcEEEEec
Q 003163 489 SSEY-AKVP------------WFDSVFADIGDEQSLSQSLSTFSGH--LKQIGNI-ISQST----------SQSLVLLDE 542 (843)
Q Consensus 489 a~~~-~~i~------------~~~~i~~~ig~~q~i~~~lstfS~~--~~~l~~i-l~~a~----------~p~LLLLDE 542 (843)
.... ..+. .....+..++..+. ...+. +|++ +++...+ .+++. +|++++|||
T Consensus 115 q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred cccccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 1000 0000 01223333333221 11111 4544 4443333 33334 899999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHH-----hcC---CeEEEEEccchh---HHhhhccc
Q 003163 543 IGAGTNPLEGTALGMSLLEAFA-----ESG---SLLTIATTHHGE---LKTLKYSN 587 (843)
Q Consensus 543 P~sGlDp~e~~al~~~lle~L~-----~~g---~t~vlitTHd~e---l~~~a~~~ 587 (843)
||+|+||.....+... +..+. +.| .++++++||+.. +..+++..
T Consensus 193 PtsgLD~~~~~~l~~~-l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQD-IRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HTTCCTTCCHHHHHHH-HHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred ccccCCHHHHHHHHHH-HHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999999887777544 44442 322 233888999765 55566555
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.06 E-value=1e-10 Score=135.99 Aligned_cols=136 Identities=9% Similarity=-0.015 Sum_probs=87.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccc---cccccccccccchHHHHHhhcCch--h--------hHhhhhhhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDE--Q--------SLSQSLSTF 518 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---~~vpa~~~~~i~~~~~i~~~ig~~--q--------~i~~~lstf 518 (843)
..|++++|+||||+|||||++++++.... . | .++.. +.....++.. ...++.. + ........+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~-G~~vi~~~~-ee~~~~l~~~-~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA-N-KERAILFAY-EESRAQLLRN-AYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT-T-TCCEEEEES-SSCHHHHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh-C-CCCEEEEEE-eCCHHHHHHH-HHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 47889999999999999999999765432 1 3 22222 1111111111 1122221 1 111223345
Q ss_pred hHHhHH-HHHHHHhCCCCcEEEEecCCCCCChh-----hHHHHHHHHHHHHHhcCCeEEEEEccch----------hHH-
Q 003163 519 SGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPL-----EGTALGMSLLEAFAESGSLLTIATTHHG----------ELK- 581 (843)
Q Consensus 519 S~~~~~-l~~il~~a~~p~LLLLDEP~sGlDp~-----e~~al~~~lle~L~~~g~t~vlitTHd~----------el~- 581 (843)
|++.++ +........+|++|||| |++|+|+. ....+ ..++..+++.|++ +|+|||+. ...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~~g~t-vilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQEEIT-GLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHHTTCE-EEEEEECSSSSCCCSSCSSCCT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHhCCCE-EEEEECcccccCcccccCcccc
Confidence 665544 44445567899999999 99999996 44444 5778888888997 99999997 443
Q ss_pred hhhccccceeeeE
Q 003163 582 TLKYSNDFFENAC 594 (843)
Q Consensus 582 ~~a~~~~~v~ng~ 594 (843)
.+|+++..+.++.
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 5778887777665
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.05 E-value=4.7e-11 Score=126.84 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=71.3
Q ss_pred ceeeEEEecCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHH----HH--hhcCchhhHhhhhhh
Q 003163 444 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS----VF--ADIGDEQSLSQSLST 517 (843)
Q Consensus 444 V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~----i~--~~ig~~q~i~~~lst 517 (843)
++.++++ ..|++++|+|||||||||||++|.++......|....... .+.++.+ ++ ..++.. ..+
T Consensus 16 vl~~i~i-~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~--~i~~~~~~~~~~v~q~~~gl~------~~~ 86 (261)
T 2eyu_A 16 KVLELCH-RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED--PIEYVFKHKKSIVNQREVGED------TKS 86 (261)
T ss_dssp HHHHGGG-CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES--SCCSCCCCSSSEEEEEEBTTT------BSC
T ss_pred HHHHHhh-CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC--cceeecCCcceeeeHHHhCCC------HHH
Confidence 4444553 5678999999999999999999976543321343221101 1111000 00 011110 012
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 518 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 518 fS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
| +.....++..+|+++|||||+ |+.... .+++. ...|.+ |++|||+.+...++++...+
T Consensus 87 l-----~~~la~aL~~~p~illlDEp~---D~~~~~----~~l~~-~~~g~~-vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 87 F-----ADALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp H-----HHHHHHHHHHCCSEEEESCCC---SHHHHH----HHHHH-HHTTCE-EEEEECCSSHHHHHHHHHHT
T ss_pred H-----HHHHHHHHhhCCCEEEeCCCC---CHHHHH----HHHHH-HccCCE-EEEEeCcchHHHHHHHHhhh
Confidence 3 233333344599999999996 885533 23343 346887 99999998877777765544
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.99 E-value=3.6e-10 Score=122.58 Aligned_cols=32 Identities=34% Similarity=0.583 Sum_probs=27.0
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
.+++. ..|++++|+|||||||||+++.|++..
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45665 678999999999999999999997653
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.94 E-value=2.9e-10 Score=125.95 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=68.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 531 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~ 531 (843)
..+.+++|+|||||||||||++|.+.......|..+...+...+..-. ....+... .+....-+|.. ....++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~-~~~~v~q~-~~~~~~~~~~~-----~La~aL 193 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES-KKCLVNQR-EVHRDTLGFSE-----ALRSAL 193 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-SSSEEEEE-EBTTTBSCHHH-----HHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc-cccceeee-eeccccCCHHH-----HHHHHh
Confidence 455689999999999999999986543322122222111111110000 00000000 00000012222 333445
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 591 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v~ 591 (843)
..+|++||+|||+ |+.. .. .+++ +...|.+ ||+|||+.+...++++...+.
T Consensus 194 ~~~PdvillDEp~---d~e~-~~---~~~~-~~~~G~~-vl~t~H~~~~~~~~dRli~l~ 244 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLET-IR---LALT-AAETGHL-VFGTLHTTSAAKTIDRVVDVF 244 (356)
T ss_dssp TSCCSEEEESCCC---SHHH-HH---HHHH-HHHTTCE-EEEEESCSSHHHHHHHHHHTS
T ss_pred hhCcCEEecCCCC---CHHH-HH---HHHH-HHhcCCE-EEEEEccChHHHHHHHHhhhc
Confidence 7899999999995 7633 22 2233 3566887 999999988888887776653
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.92 E-value=1.1e-09 Score=121.44 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=68.0
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc---------------------------cccccccc-ccc-
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------HILSSEYA-KVP- 496 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---------------------------~vpa~~~~-~i~- 496 (843)
.++|+ ..|++++|+||||||||||++.|++.... ..|. +++. ... ..+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q-~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA-EGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC-SSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEe-cccccChh
Confidence 35555 67899999999999999999999764321 1111 1111 000 000
Q ss_pred --hHHHHH------------hhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCc--EEEEecCCCCCChhhHHHHHHHHH
Q 003163 497 --WFDSVF------------ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 497 --~~~~i~------------~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~--LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
.++.+. ...|..+.....+..+| .+++....+++.+|+ +|+|| ||+|+|+... +
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~-------~ 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------A 296 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH-------H
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH-------H
Confidence 111111 01122122222233344 334444456678999 99999 9999999532 2
Q ss_pred HHHH-hcCCeEEEEEccch
Q 003163 561 EAFA-ESGSLLTIATTHHG 578 (843)
Q Consensus 561 e~L~-~~g~t~vlitTHd~ 578 (843)
..+. ..|.+ +|++||..
T Consensus 297 ~~~~~~~g~t-~iiiThlD 314 (359)
T 2og2_A 297 REFNEVVGIT-GLILTKLD 314 (359)
T ss_dssp HHHHHHTCCC-EEEEESCT
T ss_pred HHHHHhcCCe-EEEEecCc
Confidence 2344 35887 89999953
No 93
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.92 E-value=1.8e-09 Score=105.20 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=60.5
Q ss_pred hhhhhhhhHHhHHHHHHH-------HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh
Q 003163 512 SQSLSTFSGHLKQIGNII-------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 584 (843)
Q Consensus 512 ~~~lstfS~~~~~l~~il-------~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a 584 (843)
....+++|+++++...++ +++.+|+++||||||+|||+.....+. .++..+.+.|.+ ||++||+.++..+|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~t-iiivsH~~~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQ-VILVSHDEELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSE-EEEEESCGGGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCE-EEEEEChHHHHHhC
Confidence 455678998888776543 456889999999999999997766664 566666666777 99999999877888
Q ss_pred ccccce
Q 003163 585 YSNDFF 590 (843)
Q Consensus 585 ~~~~~v 590 (843)
+++..+
T Consensus 130 d~ii~l 135 (148)
T 1f2t_B 130 DHVIRI 135 (148)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887776
No 94
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.91 E-value=1.4e-10 Score=128.17 Aligned_cols=145 Identities=13% Similarity=0.119 Sum_probs=91.0
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccc-------------------------cc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-------------------------AK 494 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~-------------------------~~ 494 (843)
+..+.+++ |+ ..|++++|+||||+||||||++|++..... .|.+.-..+. ..
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~-~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD-IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC-EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 34577787 88 788999999999999999999996543211 1111000000 00
Q ss_pred cchHHHH---HhhcCchhh----------HhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHH
Q 003163 495 VPWFDSV---FADIGDEQS----------LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 561 (843)
Q Consensus 495 i~~~~~i---~~~ig~~q~----------i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle 561 (843)
.+...++ +..++..+. +...++.||++++++..+ +.+|++ ++|+||.....+ ..+++
T Consensus 136 ~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l-~~lle 205 (347)
T 2obl_A 136 RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSL-PKLLE 205 (347)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHH-HHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHH-HHHHH
Confidence 0001111 111111111 014567788888544444 466665 899999665555 56777
Q ss_pred HHHh--cCC-----eEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 562 AFAE--SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 562 ~L~~--~g~-----t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
.+.. .|. | |+++|||++ ..+|+++..+.+|++.++.
T Consensus 206 r~~~~~~GsiT~~~t-Vl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 206 RAGPAPKGSITAIYT-VLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp TCEECSSSEEEEEEE-EECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred HHhCCCCCCeeeEEE-EEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 7653 355 5 999999988 6789999999999998875
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.90 E-value=2e-09 Score=110.73 Aligned_cols=126 Identities=16% Similarity=0.124 Sum_probs=64.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-------cccccccccccc-ccchHHHHHhhcCch-hhHhhhhh---hhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDE-QSLSQSLS---TFS 519 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~-q~i~~~ls---tfS 519 (843)
+.|++++|+||||+|||||++.+++..... ....++.. +.. ....+......++.. +.+..++. .++
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT-EGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC-CCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 467899999999999999999997643321 11123332 111 111122233334432 11112211 111
Q ss_pred H-HhHH-HHHHHHh--CCCCcEEEEecCCCCCChh-------h-----HHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 520 G-HLKQ-IGNIISQ--STSQSLVLLDEIGAGTNPL-------E-----GTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 520 ~-~~~~-l~~il~~--a~~p~LLLLDEP~sGlDp~-------e-----~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
. +... +..+... ..+|++|++|||++++|+. . ...+...+.....+.|++ ||+|+|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t-vi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA-VVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEC----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeeee
Confidence 1 1111 1112222 2579999999999999984 1 223433444444556887 999999653
No 96
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.87 E-value=1.7e-09 Score=119.57 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=69.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-ccc----c--cccccccccc-cchHHHHHhhcCch-hhHhhhhh---hh-
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKS----G--LHILSSEYAK-VPWFDSVFADIGDE-QSLSQSLS---TF- 518 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~----G--~~vpa~~~~~-i~~~~~i~~~ig~~-q~i~~~ls---tf- 518 (843)
+.|+++.|+||||+|||||++++++.... ... | .++.. +... ...+..++..++.. +.+..++. .+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~-e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT-ENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES-SSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC-CCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 57899999999999999999999765421 111 2 34433 2211 01122233333321 12222221 11
Q ss_pred hHHhHHHHHH-HHhC-------CCCcEEEEecCCCCCChhh------------HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 519 SGHLKQIGNI-ISQS-------TSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 519 S~~~~~l~~i-l~~a-------~~p~LLLLDEP~sGlDp~e------------~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+.+..++... ...+ .+|++||+|||++++|+.. ...+...+.....+.+++ ||+|+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t-vii~~h~~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE-EEEEcccc
Confidence 2333332222 2222 6899999999999999842 123333333333446887 99999986
Q ss_pred h
Q 003163 579 E 579 (843)
Q Consensus 579 e 579 (843)
.
T Consensus 287 ~ 287 (349)
T 1pzn_A 287 A 287 (349)
T ss_dssp -
T ss_pred c
Confidence 4
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=4e-09 Score=102.51 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred CCeEEEEEccCCCCchhhhhcccchhhhcccc---cccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
.++.++|+||||+|||||+++++..... .| .++++.. +...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~-------------~~~~--------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAAS-------------MPLT--------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTT-------------SCCC---------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHH-------------hhHH---------------------
Confidence 5678999999999999999999754332 12 1222100 0000
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
..+.+|++|+||||++ +++.....+ ..+++.+.+.|.+.+|+|||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l-~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALL-FSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHH-HHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHH-HHHHHHHHHcCCcEEEEECCC
Confidence 1234789999999998 555454444 567777777776426778885
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.85 E-value=2.9e-10 Score=118.82 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 440 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 440 ~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+++.++++++|+ ..|.+++|+|||||||||++|+|++.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466799999999 88899999999999999999999653
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.84 E-value=1.8e-10 Score=116.52 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCCchhhhhcccchhh
Q 003163 454 TRVLVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
|++++|+||||+|||||+++|++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46789999999999999999976543
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.73 E-value=3.7e-11 Score=121.87 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=32.0
Q ss_pred CCCCcEEEEecCCCC-------CChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 532 STSQSLVLLDEIGAG-------TNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 532 a~~p~LLLLDEP~sG-------lDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+.+|.++++|||+++ +|+.....+...+.+...+.|.+ ++.++|+.
T Consensus 109 i~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t-~~~~~~~~ 161 (211)
T 3asz_A 109 ILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRS-LEGVVAQY 161 (211)
T ss_dssp EEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred EEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 345566667999999 89866666655554444566887 78888863
No 101
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.73 E-value=1.1e-09 Score=124.73 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=91.9
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccc-----------------------------ccccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILSS 490 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~-----------------------------~vpa~ 490 (843)
+..+++++ |+ ..|++++|+||||+||||||++|+++.-.. .|. +++..
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~-~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD-VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS-EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC-eEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 35678888 88 888999999999999999999996543211 111 11110
Q ss_pred ccccc---chHH------HHHhhcCc-hhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHH
Q 003163 491 EYAKV---PWFD------SVFADIGD-EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 560 (843)
Q Consensus 491 ~~~~i---~~~~------~i~~~ig~-~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~ll 560 (843)
..... .... ..+...+. -..+...++.||++++++..+ +.+|++ ++|+||.....+ ..++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l-~~ll 291 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKL-PALV 291 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHH-HHHH
Confidence 00000 0000 01111110 001123467788888555444 667776 999999666665 4566
Q ss_pred HHHHh---c-CC-----eEEEEEccchhHHhhhccccceeeeEEEEec
Q 003163 561 EAFAE---S-GS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 561 e~L~~---~-g~-----t~vlitTHd~el~~~a~~~~~v~ng~v~fd~ 599 (843)
+.+.. . |. | |+++|||++ ..+|++...+.+|++..+.
T Consensus 292 ~r~~~~~~~~GsiT~~~t-Vlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYT-VLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp TTCSCCSTTSCEEEEEEE-EECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HHHHhccCCCCcccceeE-EEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 66655 2 53 5 999999998 7789999999999998875
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.73 E-value=1.3e-10 Score=126.13 Aligned_cols=130 Identities=11% Similarity=-0.024 Sum_probs=81.1
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccccccccccc-------c-cccchH-------HHHHhhc
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE-------Y-AKVPWF-------DSVFADI 505 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~-------~-~~i~~~-------~~i~~~i 505 (843)
..++++++++ +.|++++|+||||||||||+++|.++. -+..-.+++... . ..+.+. ...+..+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~ 191 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY 191 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH
Confidence 3578889999 889999999999999999999997654 211111222100 0 011110 1111110
Q ss_pred CchhhHhhhhhhhhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003163 506 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 585 (843)
Q Consensus 506 g~~q~i~~~lstfS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~ 585 (843)
..+.+. ...+|+++++. +.+++.+|+||| |++||+.....+. . .||+.....+++
T Consensus 192 -L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~-----~-----------ltH~~~~~~~aD 246 (305)
T 2v9p_A 192 -LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYL-----Y-----------LHSRVQTFRFEQ 246 (305)
T ss_dssp -TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGG-----G-----------GTTTEEEEECCC
T ss_pred -hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHH-----H-----------HhCCHHHHHhCC
Confidence 011111 34688877776 666788999999 9999996555442 1 189888888999
Q ss_pred cccceeeeEEEEe
Q 003163 586 SNDFFENACMEFD 598 (843)
Q Consensus 586 ~~~~v~ng~v~fd 598 (843)
++ .+.+|.+.+.
T Consensus 247 ~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 247 PC-TDESGEQPFN 258 (305)
T ss_dssp CC-CCC---CCCC
T ss_pred EE-EEeCCEEEEe
Confidence 99 9999988643
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.73 E-value=5.7e-10 Score=121.47 Aligned_cols=117 Identities=8% Similarity=-0.020 Sum_probs=64.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc----ccccccccccccccc----------------------hHHHHHhhc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGLHILSSEYAKVP----------------------WFDSVFADI 505 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~~vpa~~~~~i~----------------------~~~~i~~~i 505 (843)
..|.+++|+||||||||||+++|+++.... .. .+++. .....+ .+..++..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v-~~v~q-d~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRV-DLVTT-DGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCE-EEEEG-GGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeE-EEEec-CccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 578999999999999999999997653221 11 12221 110000 011111222
Q ss_pred CchhhHhhhhhhhhHHhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 506 GDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 506 g~~q~i~~~lstfS~~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
+ ..........||+++++...+ .+.+.+|++||||||+.+.|+.. . .+.+.--. +|+++|+.+..
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~--------~l~~~~D~-~I~V~a~~~~~ 231 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-L--------MVSDLFDF-SLYVDARIEDI 231 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-C--------CGGGGCSE-EEEEEECHHHH
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-H--------HHHHhcCc-EEEEECCHHHH
Confidence 1 111112334667776554333 34578999999999999998621 1 12222123 57777776553
No 104
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.71 E-value=9.6e-10 Score=113.19 Aligned_cols=136 Identities=13% Similarity=-0.005 Sum_probs=69.2
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhccc--cccc----cc-ccccccch-------HHHHH------
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GLHI----LS-SEYAKVPW-------FDSVF------ 502 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~--G~~v----pa-~~~~~i~~-------~~~i~------ 502 (843)
-+++++|+ ..|++++|+||||||||||+++|+++. .+.. |..+ |. .....+.+ |....
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 90 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFL 90 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchh
Confidence 46788888 788999999999999999999997654 1110 1000 00 00001111 11110
Q ss_pred ------h-hcCch-hhHhhhh---------hhhhHHhHHHHHH------HHhCCCCcEEEEecCCCCCChhhHHHHHHHH
Q 003163 503 ------A-DIGDE-QSLSQSL---------STFSGHLKQIGNI------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 559 (843)
Q Consensus 503 ------~-~ig~~-q~i~~~l---------stfS~~~~~l~~i------l~~a~~p~LLLLDEP~sGlDp~e~~al~~~l 559 (843)
. ..|.. ..+...+ ..+|+++++...+ ..++.+|++++||||++++|......+...+
T Consensus 91 ~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l 170 (218)
T 1z6g_A 91 EYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRM 170 (218)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred hhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0 00110 1111111 1346665544333 2345688999999999999986655554444
Q ss_pred HHHHHh------cCCeEEEEEccchhHH
Q 003163 560 LEAFAE------SGSLLTIATTHHGELK 581 (843)
Q Consensus 560 le~L~~------~g~t~vlitTHd~el~ 581 (843)
.....+ ..+. .|+++|+.+.+
T Consensus 171 ~~~~~~~~~~h~~~~d-~iiv~~~~~ea 197 (218)
T 1z6g_A 171 EQLNIELHEANLLNFN-LSIINDDLTLT 197 (218)
T ss_dssp HHHHHHHHHHTTSCCS-EEEECSSHHHH
T ss_pred HHHHHHHHhhcccCCC-EEEECCCHHHH
Confidence 332222 4566 78889987654
No 105
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.69 E-value=2.9e-09 Score=113.59 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEccCCCCchhhhhcccchhh
Q 003163 457 LVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
++|+||||+||||||++|.+...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999976543
No 106
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.63 E-value=4.2e-08 Score=120.24 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=77.0
Q ss_pred HHhhcCchh-hHhhhhhhhhHHhHHHHHHH-HhCCCCc--EEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003163 501 VFADIGDEQ-SLSQSLSTFSGHLKQIGNII-SQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 576 (843)
Q Consensus 501 i~~~ig~~q-~i~~~lstfS~~~~~l~~il-~~a~~p~--LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTH 576 (843)
.+..+|... ......+++|+++++...++ +++.+|+ ++||||||+||||.+...+. .+++.|.+.|.| ||+|||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~T-vivVtH 524 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNT-VIVVEH 524 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCE-EEEECC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeC
Confidence 455667653 35677889998877666665 4455555 99999999999998888885 567778888997 999999
Q ss_pred chhHHhhhccccce------eeeEEEEec
Q 003163 577 HGELKTLKYSNDFF------ENACMEFDE 599 (843)
Q Consensus 577 d~el~~~a~~~~~v------~ng~v~fd~ 599 (843)
|+++...|+++..+ .+|.+.++.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~G 553 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQG 553 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEee
Confidence 99998889999988 788887753
No 107
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.62 E-value=2.4e-08 Score=111.27 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=65.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccc------cchHHHHHhhcCchhhHhhhhhhhhHHhHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK------VPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 525 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~------i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l 525 (843)
..|++++|+|||||||||||++|.+.......|..+....... +.++.+ ..+|. ....|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q--~~~g~------~~~~~~~----- 200 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ--REVGE------DTKSFAD----- 200 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEE--EEBTT------TBSCSHH-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEe--eecCC------CHHHHHH-----
Confidence 4677899999999999999999965443221232211101111 111100 00111 1123432
Q ss_pred HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003163 526 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 526 ~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
....++..+|+++|+|||+ |+.... .+++. ...|.+ +++|+|+.+...++++...
T Consensus 201 ~l~~~L~~~pd~illdE~~---d~e~~~----~~l~~-~~~g~~-vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHH-HTTTCE-EEECCCCCSHHHHHHHHHH
T ss_pred HHHHHhhhCcCEEEECCCC---CHHHHH----HHHHH-HhcCCE-EEEEECcchHHHHHHHHHH
Confidence 2222345689999999995 774422 23343 356786 9999999876666665543
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.60 E-value=2.8e-09 Score=126.00 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCCcEEEEecC------CCCCChhhHHHHHHHHHHH-HHhcCCeEEEEEccchhH
Q 003163 532 STSQSLVLLDEI------GAGTNPLEGTALGMSLLEA-FAESGSLLTIATTHHGEL 580 (843)
Q Consensus 532 a~~p~LLLLDEP------~sGlDp~e~~al~~~lle~-L~~~g~t~vlitTHd~el 580 (843)
...|+|+|+||| |+|+|+.....+. .++.. +.+..+.+++++||+.++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~-~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIK-TLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHH-HHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHH-HHHHHHHhcCCCCceEEEeccchh
Confidence 356999999999 9999996666664 45555 444433348889998764
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.59 E-value=1.9e-08 Score=104.06 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=59.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-ccccc-cc---cccc--ccccchH---HHHHhhcCc----hhhHhhhhhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL-HI---LSSE--YAKVPWF---DSVFADIGD----EQSLSQSLST 517 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~-~v---pa~~--~~~i~~~---~~i~~~ig~----~q~i~~~lst 517 (843)
+.|++++|+||||||||||+|+|.+.... ...|. .+ +... ...+.++ ...|..+.. .+++... ..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~-~~ 92 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF-GN 92 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET-TE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH-hc
Confidence 67899999999999999999999765431 11121 11 1100 0111111 122222111 1111100 01
Q ss_pred hhHHhHHHHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 518 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 518 fS~~~~~l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
+.+... ..+...+..+.++||| +|+.....+. .++ . .+.+ |+++||+.+..
T Consensus 93 ~yg~~~--~~v~~~l~~G~illLD-----LD~~~~~~i~-~~l---~-~~~t-I~i~th~~~~l 143 (219)
T 1s96_A 93 YYGTSR--EAIEQVLATGVDVFLD-----IDWQGAQQIR-QKM---P-HARS-IFILPPSKIEL 143 (219)
T ss_dssp EEEEEH--HHHHHHHTTTCEEEEE-----CCHHHHHHHH-HHC---T-TCEE-EEEECSSHHHH
T ss_pred cCCCCH--HHHHHHHhcCCeEEEE-----ECHHHHHHHH-HHc---c-CCEE-EEEECCCHHHH
Confidence 111111 1233334568999999 9995554443 332 2 4666 99999998765
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.58 E-value=6.4e-08 Score=118.34 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=77.0
Q ss_pred HhhcCchh-hHhhhhhhhhHHhHHHHHHHH-hCCC--CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 502 FADIGDEQ-SLSQSLSTFSGHLKQIGNIIS-QSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 502 ~~~ig~~q-~i~~~lstfS~~~~~l~~il~-~a~~--p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+..+|... .+.....++|+++++...++. ++.+ |.|+||||||+||||.+...+. .+++.|++.|.| ||+||||
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~T-VIvVeHd 565 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNT-LIVVEHD 565 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE-EEEECCC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecC
Confidence 55667653 367778899988777666654 4555 5899999999999998888885 677888989998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEec
Q 003163 578 GELKTLKYSNDFF------ENACMEFDE 599 (843)
Q Consensus 578 ~el~~~a~~~~~v------~ng~v~fd~ 599 (843)
+++...||++..+ .+|.+.++.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G 593 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAG 593 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEec
Confidence 9988889988888 678887754
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.56 E-value=7e-08 Score=118.38 Aligned_cols=95 Identities=21% Similarity=0.176 Sum_probs=75.2
Q ss_pred HhhcCchh-hHhhhhhhhhHHhHHHHHHH-HhCCC--CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003163 502 FADIGDEQ-SLSQSLSTFSGHLKQIGNII-SQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 502 ~~~ig~~q-~i~~~lstfS~~~~~l~~il-~~a~~--p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd 577 (843)
+..+|... ++.....++|+++++...++ +++.+ |.|+||||||+||||.+...+. .+++.|++.|.| ||+|+||
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~T-VIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNT-LIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCE-EEEECCC
Confidence 45566653 36677889998877666665 44555 5899999999999998888875 677888989998 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003163 578 GELKTLKYSNDFF------ENACMEFD 598 (843)
Q Consensus 578 ~el~~~a~~~~~v------~ng~v~fd 598 (843)
.++...||++..+ .+|.+.++
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEe
Confidence 9988889988888 56777664
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.55 E-value=1.3e-08 Score=112.74 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=38.4
Q ss_pred CCCCcEEEEec---CC------CCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 532 STSQSLVLLDE---IG------AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 532 a~~p~LLLLDE---P~------sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
..+|+++|||| |+ .++|+.....++..+.+.+.+.+.+ +|++||......+++....+
T Consensus 275 ~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 275 EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHHHHH
Confidence 35899999999 65 5889988888887666655666777 88888875555555544433
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.53 E-value=1.5e-07 Score=114.57 Aligned_cols=96 Identities=21% Similarity=0.160 Sum_probs=76.9
Q ss_pred HHhhcCchh-hHhhhhhhhhHHhHHHHHHH-HhCCCC--cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003163 501 VFADIGDEQ-SLSQSLSTFSGHLKQIGNII-SQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 576 (843)
Q Consensus 501 i~~~ig~~q-~i~~~lstfS~~~~~l~~il-~~a~~p--~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTH 576 (843)
.+..+|... .+.+...++|+++++...++ +++.+| .|+||||||+||||.+...+. .+++.|.+.|.| ||++||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~T-VIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNS-LFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE-EEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCE-EEEEcC
Confidence 355677653 36778889998877666555 456666 599999999999998888885 677888999998 999999
Q ss_pred chhHHhhhccccce------eeeEEEEe
Q 003163 577 HGELKTLKYSNDFF------ENACMEFD 598 (843)
Q Consensus 577 d~el~~~a~~~~~v------~ng~v~fd 598 (843)
++++...|+++..+ .+|.+.+.
T Consensus 440 dl~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 440 DLDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp CHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CHHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 99988889988888 67777765
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.50 E-value=1.6e-07 Score=105.61 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=64.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-cc------ccccccccccccchHHHHHhhcCch-hhHhhhhh---hhhH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KS------GLHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFSG 520 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q~------G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~ls---tfS~ 520 (843)
..|++++|+||||+|||||+++++...... .. ..|+.............+...++.. +.+..++. .+..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 478899999999999999999764322221 11 1233321111111122234445432 22222211 1111
Q ss_pred -H-hHHHHHHHH--hCCCCcEEEEecCCCCCChhhH------------HHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 521 -H-LKQIGNIIS--QSTSQSLVLLDEIGAGTNPLEG------------TALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 521 -~-~~~l~~il~--~a~~p~LLLLDEP~sGlDp~e~------------~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+ +..+..+.. ...+|++|++|||++.+|+... ..+...+.+...+.|++ ||+|||..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~git-VIlv~Hv~ 328 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVA-VVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEEEC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEEeec
Confidence 1 111111211 1257999999999999986422 23333333333456887 99999983
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.43 E-value=2e-07 Score=101.14 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.6
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..+++++|+||||||||||++.|+++.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 367899999999999999999997553
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.41 E-value=9.8e-08 Score=103.18 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=20.3
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccch
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
++.+..+++|. ++|+||||+|||||+++|.+.
T Consensus 10 ~~~~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 10 RKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --------CEE-----EEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEcCCCEE-----EEEECCCCCCHHHHHHHHhCC
Confidence 45677888775 599999999999999997554
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.41 E-value=8.4e-07 Score=91.11 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCCcEEEEecCCCCC--ChhhHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 533 TSQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 533 ~~p~LLLLDEP~sGl--Dp~e~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
.+|+++++|+|++.. |+.........+.+.+.+.|++ ||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~-vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCT-SIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCE-EEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence 478999999999887 5545556666777777788887 999999754
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.35 E-value=3.4e-07 Score=98.87 Aligned_cols=156 Identities=14% Similarity=0.160 Sum_probs=81.5
Q ss_pred ecCCeEEEEEccCCCCchhhhhcccchhhhcccc---cccccccccccchHHHH---HhhcCchhhHhhhhhhhhHHhHH
Q 003163 451 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSV---FADIGDEQSLSQSLSTFSGHLKQ 524 (843)
Q Consensus 451 ~~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G---~~vpa~~~~~i~~~~~i---~~~ig~~q~i~~~lstfS~~~~~ 524 (843)
...+++++|+||||+||||+++.|+...... .| .++.+ ........+++ ...+|..... .++. ..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~-----~~~~--~~ 172 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFITT-DTYRIAAVEQLKTYAELLQAPLEV-----CYTK--EE 172 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEEC-CCSSTTHHHHHHHHHTTTTCCCCB-----CSSH--HH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEec-CcccchHHHHHHHHHHhcCCCeEe-----cCCH--HH
Confidence 3467899999999999999999997544321 23 23333 22122222222 1112211000 0111 11
Q ss_pred HHHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH---hcCCeEEEE-Eccch-hHHhhhccccceeeeEEEEec
Q 003163 525 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIA-TTHHG-ELKTLKYSNDFFENACMEFDE 599 (843)
Q Consensus 525 l~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~---~~g~t~vli-tTHd~-el~~~a~~~~~v~ng~v~fd~ 599 (843)
+...+..+.+++++|+| |+|+|+.....+ ..+...+. ..+.. +++ +||.. ++...++....+..+.+.+..
T Consensus 173 l~~al~~~~~~dlvIiD--T~G~~~~~~~~~-~el~~~l~~~~~~~~~-lVl~at~~~~~~~~~~~~~~~l~~~giVltk 248 (296)
T 2px0_A 173 FQQAKELFSEYDHVFVD--TAGRNFKDPQYI-DELKETIPFESSIQSF-LVLSATAKYEDMKHIVKRFSSVPVNQYIFTK 248 (296)
T ss_dssp HHHHHHHGGGSSEEEEE--CCCCCTTSHHHH-HHHHHHSCCCTTEEEE-EEEETTBCHHHHHHHTTTTSSSCCCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEe--CCCCChhhHHHH-HHHHHHHhhcCCCeEE-EEEECCCCHHHHHHHHHHHhcCCCCEEEEeC
Confidence 23333345789999999 889998554433 34444332 22333 444 58874 455666665555556666532
Q ss_pred ccceeeEEEecCCCCCChHHHHHHHcCCC
Q 003163 600 VKLKPTYKILWGVPGRSSAINIAERLGLP 628 (843)
Q Consensus 600 ~~l~ptY~l~~G~~g~S~a~~iA~~~gl~ 628 (843)
-.. ......++.++..+|+|
T Consensus 249 ~D~---------~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 249 IDE---------TTSLGSVFNILAESKIG 268 (296)
T ss_dssp TTT---------CSCCHHHHHHHHTCSCC
T ss_pred CCc---------ccchhHHHHHHHHHCcC
Confidence 111 11122566666666665
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=4.1e-07 Score=99.11 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=29.2
Q ss_pred CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003163 532 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 532 a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~e 579 (843)
..+|.++|||||++ +|+....++. .+++... .+++ +|++||+..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~-~~le~~~-~~~~-~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALR-RTMEKYS-KNIR-LIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHH-HHHHHST-TTEE-EEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHH-HHHHhhc-CCCE-EEEEeCCHH
Confidence 45889999999999 9985544443 3333322 2454 899999864
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.32 E-value=9.4e-08 Score=108.01 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.2
Q ss_pred CccceeeEEEecCCeEEEEEccCCCCchhhhhcccchhh
Q 003163 441 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 441 ~~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
++.+..+++|. ++|+||||+|||||+++|++...
T Consensus 23 ~~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 23 RKSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp TTTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCC
T ss_pred CEEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCCC
Confidence 45678888875 59999999999999999976543
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.30 E-value=9.7e-07 Score=88.05 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=55.0
Q ss_pred hhhhhhHHhHHHHHHHH-h----CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 514 SLSTFSGHLKQIGNIIS-Q----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 514 ~lstfS~~~~~l~~il~-~----a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
.++.+|++++++..++. + ..+|+++|||||++|||+.....+. .++..+.. +.+ +|++||+..+..+|++..
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~-~~l~~~~~-~~~-~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVA-DLIKESSK-ESQ-FIVITLRDVMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH-HHHHHHTT-TSE-EEEECSCHHHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHH-HHHHHhcc-CCE-EEEEEecHHHHHhCCEEE
Confidence 44568888777655543 3 2567999999999999997777765 45555544 455 899999988888888877
Q ss_pred cee
Q 003163 589 FFE 591 (843)
Q Consensus 589 ~v~ 591 (843)
++.
T Consensus 138 ~v~ 140 (173)
T 3kta_B 138 GVS 140 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.30 E-value=9.5e-07 Score=102.34 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=77.4
Q ss_pred hhhhhh-hHHhHH-HHHHHHhCCCC--cEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003163 513 QSLSTF-SGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 588 (843)
Q Consensus 513 ~~lstf-S~~~~~-l~~il~~a~~p--~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~ 588 (843)
..++.+ |+++++ +..+.+++.+| ++|||||||+|+|+.....+. .++..+.+ |.+ ||++||++++..+|+++.
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~-vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQ-VLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSE-EEEECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCE-EEEEecCHHHHHhCCEEE
Confidence 334555 766554 44445567788 999999999999997777765 56666776 777 999999999998898888
Q ss_pred ceeeeEEEEecccceeeEEEecCCCCCChHHHHHHHcC--CCHHHHHHHHHHH
Q 003163 589 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG--LPGIVVQNARQLY 639 (843)
Q Consensus 589 ~v~ng~v~fd~~~l~ptY~l~~G~~g~S~a~~iA~~~g--l~~~ii~~A~~~~ 639 (843)
.+.++.. +..+.. ... .......-.+|++.++ +.+..+..|+.++
T Consensus 469 ~~~~~~~--~~~~~~-~~~---~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 469 KVEKQVE--DGRTVS-HVR---LLTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp EEECCEE--TTEECC-EEE---ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred EEecccc--CCceee-eee---eCCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 8765532 111111 000 1122223456777774 4566677777654
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.17 E-value=7.4e-06 Score=90.40 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=63.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-cccccccccccccccchHHHHHhhcCch-hhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~lstfS~~~~~l~~il 529 (843)
+.|+++.|.||||+|||||+..++..... .....|+.. +...-. .....+|.. +++......-..+...+...+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~-E~~~~~---~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l 134 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA-EHALDP---EYAKKLGVDTDSLLVSQPDTGEQALEIADML 134 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCH---HHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCcCH---HHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 46789999999999999998887533221 112234443 221111 112233321 111100000011222233323
Q ss_pred HhCCCCcEEEEecCCCCC----------Ch---hhH---HHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 530 SQSTSQSLVLLDEIGAGT----------NP---LEG---TALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGl----------Dp---~e~---~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
....+|++|++|+|++.+ |+ ... ......+...+.+.+++ ||+++|..
T Consensus 135 ~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~t-VI~inh~~ 198 (349)
T 2zr9_A 135 VRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTT-AIFINELR 198 (349)
T ss_dssp HTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC
T ss_pred HhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 334579999999999988 22 111 12223333344677887 99999964
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.15 E-value=3.5e-07 Score=103.33 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=36.7
Q ss_pred hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 531 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 531 ~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+....++|++|+|+..+.+.+...+...+.+.|...|.. |+.+|.+.
T Consensus 173 L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~-I~~is~~d 219 (427)
T 2qag_B 173 LDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQ-IYQFPTDD 219 (427)
T ss_dssp TCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCC-CCCCC---
T ss_pred HhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCc-EEecCCCc
Confidence 346889999999999999988888877676678888987 78877653
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.09 E-value=4.3e-07 Score=100.64 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=67.0
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCc-h-hhHhhhhhhhhH
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD-E-QSLSQSLSTFSG 520 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~-~-q~i~~~lstfS~ 520 (843)
++.++++. ..|++++|+||||||||||+++|.++.-. ..|...-. ....+... .....++. . +... +.. +.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie-~~~e~~~~-~~~~~v~~v~~q~~~--~~~-~~ 237 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE-DVPELFLP-DHPNHVHLFYPSEAK--EEE-NA 237 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE-SSSCCCCT-TCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC-CccccCcc-ccCCEEEEeecCccc--ccc-cc
Confidence 34778888 78889999999999999999999654321 22221111 00011000 00000000 0 0000 000 01
Q ss_pred HhHHHHHH-HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003163 521 HLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 590 (843)
Q Consensus 521 ~~~~l~~i-l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~v 590 (843)
+......+ ..+...|+.+++||+.. . + +..+++.+.....+ ++.++|.......+++...+
T Consensus 238 ~~t~~~~i~~~l~~~pd~~l~~e~r~---~-~----~~~~l~~l~~g~~~-~l~t~H~~~~~~~~~Rl~~l 299 (361)
T 2gza_A 238 PVTAATLLRSCLRMKPTRILLAELRG---G-E----AYDFINVAASGHGG-SITSCHAGSCELTFERLALM 299 (361)
T ss_dssp -CCHHHHHHHHTTSCCSEEEESCCCS---T-H----HHHHHHHHHTTCCS-CEEEEECSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCCEEEEcCchH---H-H----HHHHHHHHhcCCCe-EEEEECCCCHHHHHHHHHHH
Confidence 11111111 23346899999999953 2 1 22345555554445 79999987765555554444
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=3.2e-06 Score=92.60 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..|++++|+|||||||||+++.|++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999997643
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.01 E-value=3.9e-07 Score=89.51 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=32.5
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..+.++++|+ ..|++++|+||||||||||+|+|+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4677888888 889999999999999999999997654
No 128
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.99 E-value=5.3e-06 Score=93.70 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=55.7
Q ss_pred hhhhhHHhHHHHHHH-HhC----CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003163 515 LSTFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 589 (843)
Q Consensus 515 lstfS~~~~~l~~il-~~a----~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~~~ 589 (843)
++.+|+++++...++ .++ .+|+++|||||+++||+.....+. .++..+...+.+ +|+|||+..+...|+++.+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~~~~~~-~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIA-AYIRRHRNPDLQ-FIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHH-HHHHHHCBTTBE-EEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHH-HHHHHHhcCCCE-EEEEECCHHHHHhCCEEEE
Confidence 456788777665554 344 689999999999999997776665 455555444666 9999999888888887776
Q ss_pred ee
Q 003163 590 FE 591 (843)
Q Consensus 590 v~ 591 (843)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 129
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.96 E-value=1.4e-06 Score=90.59 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+|||||||||++++|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999997
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.95 E-value=9.5e-06 Score=89.96 Aligned_cols=73 Identities=18% Similarity=0.097 Sum_probs=51.0
Q ss_pred hhhhHHhHHHHH-------HHHhCCC-CcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003163 516 STFSGHLKQIGN-------IISQSTS-QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 587 (843)
Q Consensus 516 stfS~~~~~l~~-------il~~a~~-p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~~ 587 (843)
+.+|+++++... +..++.+ |+++|||||++|+|+.....+. .++..+. .+.+ ||+|||+.++..+|+++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~-~~l~~~~-~~~~-vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLA-EIFRKVK-SIPQ-MIIITHHRELEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHH-HHHHHCC-SCSE-EEEEESCGGGGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHH-HHHHHhc-cCCe-EEEEEChHHHHhhCCEE
Confidence 356766655432 1233567 9999999999999997766665 4444443 3455 89999998877788777
Q ss_pred ccee
Q 003163 588 DFFE 591 (843)
Q Consensus 588 ~~v~ 591 (843)
..+.
T Consensus 356 ~~l~ 359 (371)
T 3auy_A 356 INVK 359 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.85 E-value=1.5e-05 Score=91.49 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.9
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..+++|. ..|.+++|+||||||||||+++|+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567777 778999999999999999999997653
No 132
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.81 E-value=8.1e-06 Score=81.66 Aligned_cols=42 Identities=7% Similarity=-0.167 Sum_probs=28.0
Q ss_pred HHHHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCC
Q 003163 526 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 568 (843)
Q Consensus 526 ~~il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~ 568 (843)
..+.+.+.+|.++++|||+|++|+.....+...+.+ +...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~-~~~~~~ 201 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT-WFSEMQ 201 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH-HHC---
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH-HHhhcc
Confidence 445555667788899999999999777777655544 444444
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.77 E-value=9.6e-06 Score=91.54 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=70.7
Q ss_pred eeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh----------hhcccccc---------c---ccc-----cccccc
Q 003163 445 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------MMAKSGLH---------I---LSS-----EYAKVP 496 (843)
Q Consensus 445 ~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~----------~~~q~G~~---------v---pa~-----~~~~i~ 496 (843)
-.+++|+ ..+..++|+||||+||||||++|.... +....|.. + |.. ....+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~ 226 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLG 226 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhh
Confidence 3677777 677889999999999999999996542 11111110 0 000 000010
Q ss_pred -hHHHH-------HhhcCchhhHhhhhhhhhHHhHHHHHHH-HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcC
Q 003163 497 -WFDSV-------FADIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 567 (843)
Q Consensus 497 -~~~~i-------~~~ig~~q~i~~~lstfS~~~~~l~~il-~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g 567 (843)
.|... +..++.. ...+..++..++++..+. +++..|.+|++ +++|+... .....+.+.+.+.+
T Consensus 227 ~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g 298 (416)
T 1udx_A 227 LEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREG 298 (416)
T ss_dssp HHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcC
Confidence 00000 0001111 334456677776666553 34678999999 99999766 44455666666667
Q ss_pred CeEEEEEc-cc
Q 003163 568 SLLTIATT-HH 577 (843)
Q Consensus 568 ~t~vlitT-Hd 577 (843)
.+ ++++| |.
T Consensus 299 ~~-vi~iSA~~ 308 (416)
T 1udx_A 299 LA-VLPVSALT 308 (416)
T ss_dssp SC-EEECCTTT
T ss_pred Ce-EEEEECCC
Confidence 76 55554 54
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=3.7e-05 Score=84.13 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=62.2
Q ss_pred EEEEEccCCCCchhhhhcccchhhhc--ccccccccccc-cccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhC
Q 003163 456 VLVITGPNTGGKTICLKTVGLAVMMA--KSGLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 532 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli~~~~--q~G~~vpa~~~-~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a 532 (843)
.++|+||+|+||||+++.+....... ..-.++.+... ....++..++..++.... .... ....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHhhc
Confidence 78999999999999999985432211 01112222111 112233444444432100 0000 0111122333344445
Q ss_pred CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHh---cCCeEEEEEccchhHH
Q 003163 533 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE---SGSLLTIATTHHGELK 581 (843)
Q Consensus 533 ~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~---~g~t~vlitTHd~el~ 581 (843)
..|.+|+|||+... |+.....+. .+++.+.. .+.+ +|++||+.++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~-~~~~~~~~~~~~~~~-iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFI-RLGQEADKLGAFRIA-LVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHH-HHTTCHHHHSSCCEE-EEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHH-HHHHhCCCCCcCCEE-EEEEECCchHH
Confidence 67899999999766 653333332 23333333 4565 88899987654
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.73 E-value=2.2e-05 Score=84.52 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=26.8
Q ss_pred eeEEEecCCeEEEEEccCCCCchhhhhcccchh
Q 003163 446 IDIFIARKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 446 ~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
.++++. .+++++|+||||+||||+++.+++..
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666 78999999999999999999997543
No 136
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.69 E-value=2.7e-05 Score=86.24 Aligned_cols=74 Identities=12% Similarity=-0.023 Sum_probs=53.3
Q ss_pred hhhHHhHHH-HHHHHhC---------CCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003163 517 TFSGHLKQI-GNIISQS---------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 586 (843)
Q Consensus 517 tfS~~~~~l-~~il~~a---------~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~~~a~~ 586 (843)
.+|+++++. ..+++++ .+|++||||||+++|||.....+.. ++..+ +.+ +|++||. +. ++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~-~l~~~---~qt-~i~~th~-~~--~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLD-LAASV---PQA-IVTGTEL-AP--GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHH-HHHHS---SEE-EEEESSC-CT--TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHH-HHHhc---CcE-EEEEEec-cc--cCCE
Confidence 567666554 4445566 7999999999999999966666543 33333 345 8999995 33 7888
Q ss_pred ccceeeeEEEEe
Q 003163 587 NDFFENACMEFD 598 (843)
Q Consensus 587 ~~~v~ng~v~fd 598 (843)
+..+.+|.+...
T Consensus 337 i~~l~~G~i~~~ 348 (359)
T 2o5v_A 337 TLRAQAGRFTPV 348 (359)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEec
Confidence 888999988754
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.61 E-value=1.5e-05 Score=79.74 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|++++|+||||||||||+++|++.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 36789999999999999999999765
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.61 E-value=6.3e-05 Score=85.65 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=27.8
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
.++++..+ ..|++++|.||+|+|||||+..++....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444434 6789999999999999999999865443
No 139
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.60 E-value=1.4e-05 Score=82.13 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=20.2
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhccc-ch
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG-LA 477 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Ig-li 477 (843)
...+++|+ ..|++++|+|||||||||++++|. +.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 45567777 678999999999999999999996 54
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.58 E-value=9.6e-06 Score=87.23 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+.+++|+||+|||||||.+.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 141
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.00013 Score=83.59 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=52.6
Q ss_pred EEEEccCCCCchhhhhcccchhhhcccccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHhCCCCc
Q 003163 457 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS 536 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~a~~p~ 536 (843)
++|+||+|+|||||+|.|+.-. +.++..-....+ ...+ .|. +....+.....+....|.
T Consensus 52 vLL~GppGtGKT~Laraia~~~-----~~~f~~is~~~~---~~~~--~g~-----------~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA-----NVPFFHISGSDF---VELF--VGV-----------GAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----TCCEEEEEGGGT---TTCC--TTH-----------HHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeeCCHHHH---HHHH--hcc-----------cHHHHHHHHHHHHhcCCC
Confidence 7899999999999999996421 111100000000 0000 010 111111112222346799
Q ss_pred EEEEecCC----------CCCChhhHHHHHHHHHHHHH----hcCCeEEEEEccchhHH
Q 003163 537 LVLLDEIG----------AGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELK 581 (843)
Q Consensus 537 LLLLDEP~----------sGlDp~e~~al~~~lle~L~----~~g~t~vlitTHd~el~ 581 (843)
+|+|||+. .|.|+. .......++..+. ..+.. ||.+||..+..
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~-~~~~l~~LL~~ld~~~~~~~vi-VIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDE-REQTLNQLLVEMDGFDSKEGII-VMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CH-HHHHHHHHHHHHHHSCGGGTEE-EEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHH-HHHHHHHHHHHHhccCCCCCEE-EEEecCChhhh
Confidence 99999993 356663 3333455666554 23554 89999987654
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.55 E-value=7e-05 Score=85.04 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=56.7
Q ss_pred eEEEEEccCCCCchhhhhcccchhhhccccc---ccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHHHh
Q 003163 455 RVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 531 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~---~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il~~ 531 (843)
..++|.||+|+|||||++.|+........+. ++.+ . .+...+.. .+.. .. ...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~----~~~~~~~~----------~~~~--~~---~~~~~~~ 190 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-E----KFLNDLVD----------SMKE--GK---LNEFREK 190 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-H----HHHHHHHH----------HHHT--TC---HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-H----HHHHHHHH----------HHHc--cc---HHHHHHH
Confidence 4589999999999999999964332111011 1111 0 00011110 0000 00 1112222
Q ss_pred CC-CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 532 ST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 532 a~-~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
.. ++++|+|||+....+..........+++.+.+.|.. +|++||..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~-iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCE-EEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEECCC
Confidence 33 799999999987766423333334566667777886 88899873
No 143
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.51 E-value=0.00026 Score=78.27 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+.|+++.|+||||+|||||+..++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998643
No 144
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.50 E-value=0.00017 Score=79.09 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=64.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-------cccccccccccc-ccchHHHHHhhcCchh-hHhhhh---hhhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 519 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~q-~i~~~l---stfS 519 (843)
+.|+++.|.||+|+|||||+..++...... ....|+.. +.. ....+.++...+|... .+..++ ..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~-E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT-ENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 478899999999999999999886543221 11234443 221 1111222333444321 111111 0111
Q ss_pred -HHhHHH----HHHHHhC-CCCcEEEEecCCCCCChh--------h----HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 520 -GHLKQI----GNIISQS-TSQSLVLLDEIGAGTNPL--------E----GTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 520 -~~~~~l----~~il~~a-~~p~LLLLDEP~sGlDp~--------e----~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
.+...+ ...+... .++++|++|.+++-..+. + ...+...+.....+.+++ ||+++|..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~-Vi~~nq~~ 274 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA-VFVTNQMT 274 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeece
Confidence 122122 1222222 678999999998765431 1 123333344444556887 89998864
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.48 E-value=6.8e-05 Score=81.24 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.2
Q ss_pred EEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 448 IFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 448 isL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
+++. ..+++++|+||||+||||+++.|+...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3443 567899999999999999999997543
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.47 E-value=2.1e-05 Score=85.61 Aligned_cols=125 Identities=17% Similarity=0.145 Sum_probs=60.6
Q ss_pred CCeEEEEEccCCCCchhhhhcccchhhhc----cccccccccc-ccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHH
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGLHILSSE-YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 527 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~~~~----q~G~~vpa~~-~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~ 527 (843)
.+..++|+||+|+|||||++.++...... ....++.+.. ......+..++..++..... .+. ....-...+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~-~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGL-SIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSC-CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCC-CHHHHHHHHHH
Confidence 45678999999999999999985432111 0011122100 01111223333333321000 000 01111233444
Q ss_pred HHHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHH---hcCCeEEEEEccchhHH
Q 003163 528 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIATTHHGELK 581 (843)
Q Consensus 528 il~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~---~~g~t~vlitTHd~el~ 581 (843)
.+.....|.+|+|||+....+... ......+++.+. ..+.+ +|++||+..+.
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~-~I~~~~~~~~~ 176 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKIS-FIGITNDVKFV 176 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EE-EEEEESCGGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEE-EEEEECCCChH
Confidence 444445589999999966543211 122334555443 23454 89999987653
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.42 E-value=4.9e-05 Score=87.20 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchhh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
..++.+++|+ .. ++++|+|||||||||||++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 3578899999 66 9999999999999999999976543
No 148
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.41 E-value=0.00011 Score=84.92 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+..++|.|++||||||+|++|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999999984
No 149
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.40 E-value=4.8e-05 Score=77.03 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=24.2
Q ss_pred ecCCeEEEEEccCCCCchhhhhcccchh
Q 003163 451 ARKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 451 ~~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
...|++++|+||||||||||+++|+++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999996543
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=3.9e-05 Score=76.24 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCCchhhhhcccch
Q 003163 454 TRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+++++|+|||||||||++++|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999654
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.27 E-value=5.5e-05 Score=76.29 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCCchhhhhcccch
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.|++++|+||||||||||+++|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999654
No 152
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.27 E-value=7.6e-05 Score=73.70 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|++++|+|||||||||++|.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999653
No 153
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.25 E-value=9.1e-05 Score=72.75 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=24.3
Q ss_pred eeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 446 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 446 ~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++++. .+| +++|+|||||||||++++|.++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 345555 344 8999999999999999999543
No 154
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.25 E-value=0.00012 Score=73.17 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|+||+|+|||||++.|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999854
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.15 E-value=0.00048 Score=69.65 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.5
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..++|+||+|+||||+++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999853
No 156
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.14 E-value=0.0005 Score=74.68 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=63.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-------cccccccccccc-ccchHHHHHhhcCchh-hHhhhh---hhhh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 519 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~q-~i~~~l---stfS 519 (843)
+.|+++.|.||+|+|||||+..++...... ....|+.. +.. ....+.+....+|... .+..++ ..++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~-e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT-EGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 467899999999999999999886433221 11234433 221 1111222333444321 111111 1112
Q ss_pred H-HhHH----HHHHHHhCCCCcEEEEecCCCCCCh--------hhH----HHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 520 G-HLKQ----IGNIISQSTSQSLVLLDEIGAGTNP--------LEG----TALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 520 ~-~~~~----l~~il~~a~~p~LLLLDEP~sGlDp--------~e~----~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
. ++.. +...+....++++|++|.+++-... .+. ..+...+.....+.+++ ||+++|-.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~-Vi~~nq~~ 258 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA-VIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEccee
Confidence 1 2111 2222222267999999999875432 111 22333344444456887 88888854
No 157
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.12 E-value=0.0012 Score=75.32 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhhhcccch
Q 003163 457 LVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli 477 (843)
++|+||+|+||||+.+.++..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998643
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.10 E-value=0.00049 Score=77.99 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..+.+++++||||+||||++..|+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998643
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.09 E-value=0.0053 Score=75.19 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.2
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++|+||+|+||||+++.++..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999998643
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.09 E-value=0.00036 Score=75.18 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|+||+|+|||||++.|+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999864
No 161
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.00029 Score=77.52 Aligned_cols=115 Identities=17% Similarity=0.049 Sum_probs=56.5
Q ss_pred eEEEEEccCCCCchhhhhcccchhhhccccccccc-ccccccchHH------HHHhhcCchhhHhhhhhhhhHHhHHHHH
Q 003163 455 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS-SEYAKVPWFD------SVFADIGDEQSLSQSLSTFSGHLKQIGN 527 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli~~~~q~G~~vpa-~~~~~i~~~~------~i~~~ig~~q~i~~~lstfS~~~~~l~~ 527 (843)
-.++|+|+||+|||||++.+.+.... .+. .|. .....+..+. .++..-|..+ ......+....+...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~--~~~-~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPE--IAS-YPFTTRGINVGQFEDGYFRYQIIDTPGLLD---RPISERNEIEKQAIL 241 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCE--EEC-CTTCSSCEEEEEEEETTEEEEEEECTTTSS---SCSTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc--cCC-CCCeeeceeEEEEEecCceEEEEeCCCccc---cchhhhhHHHHHHHH
Confidence 45899999999999999998643211 110 010 0000111000 0111111111 111122222222222
Q ss_pred HHHhCCCCcEEEEe-cCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEc--cch
Q 003163 528 IISQSTSQSLVLLD-EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT--HHG 578 (843)
Q Consensus 528 il~~a~~p~LLLLD-EP~sGlDp~e~~al~~~lle~L~~~g~t~vlitT--Hd~ 578 (843)
.+....+.-|+++| +++.|+|+.+...+...+.... . +.+ +|++. ||.
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~p-iilV~NK~Dl 292 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLP-FLVVINKIDV 292 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSC-EEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCC-EEEEEECccc
Confidence 23334567789999 9999999866555544333321 1 565 55555 775
No 162
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.03 E-value=0.00027 Score=85.83 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=31.9
Q ss_pred HhCCCCcEEEEecCCC-CCChhhHHHHHHHHHHHHHhcCCeEEEE-Eccchh-HHhhhc
Q 003163 530 SQSTSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIA-TTHHGE-LKTLKY 585 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~s-GlDp~e~~al~~~lle~L~~~g~t~vli-tTHd~e-l~~~a~ 585 (843)
..+.++++|+|||+.. ++|......+...+... .....+ +++ +||+.+ +..+..
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~i-Il~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKI-IIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEE-EEEESCSCCHHHHHHTT
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceE-EEEeccccHHHHHHHhc
Confidence 3478899999999985 88874444443333322 122233 555 489854 334443
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00018 Score=71.06 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCeEEEEEccCCCCchhhhhcccch
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.|++++|+||||||||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999998543
No 164
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.00 E-value=2.3e-06 Score=95.81 Aligned_cols=56 Identities=4% Similarity=-0.068 Sum_probs=37.2
Q ss_pred CC--cEEEEecCCCCCChhhHHHHHHHHHHHH-HhcCCeEEEEEccchhHH-hhhcccc-ceeee
Q 003163 534 SQ--SLVLLDEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGELK-TLKYSND-FFENA 593 (843)
Q Consensus 534 ~p--~LLLLDEP~sGlDp~e~~al~~~lle~L-~~~g~t~vlitTHd~el~-~~a~~~~-~v~ng 593 (843)
+| ++.++|||+.+.|+...... +..++.+ ...|.+ ++ +|+.... .++++.. .+.+|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~-~~~l~~~~~~~g~t-i~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKH-LEGLRKITSRGANT-LE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCSSCS-SS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHH-HHHHHHHHHhcCCc-cc--cccHHHHHHHHHHHHHHhccC
Confidence 67 89999999999998555444 3455555 444655 43 9986544 5777665 56555
No 165
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.00 E-value=0.0014 Score=69.32 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.0
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++|.||+|+||||+.+.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45689999999999999999854
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.98 E-value=0.00019 Score=70.98 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
|++++|+|||||||||++|+|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999953
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.00021 Score=71.72 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|+|||||||||++++|+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999999999964
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.91 E-value=0.0014 Score=67.85 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.1
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+..++++. +.| ++|+||||+|||||+++|+..
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 345555555 344 899999999999999999643
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.90 E-value=0.00026 Score=70.58 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.+++|+|||||||||+++.|...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999654
No 170
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.89 E-value=0.00026 Score=76.36 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.+++|+||||||||||+++|.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999654
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.83 E-value=0.00031 Score=70.35 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=21.7
Q ss_pred CccceeeEEEe-cCCeEEEEEccCCCCchhhhhccc
Q 003163 441 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 441 ~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.....++++|. ..+++++|+||+||||||+.+.|+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 45688899999 778899999999999999999985
No 172
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.81 E-value=0.00015 Score=79.46 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.3
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..+..++++. ..+.+++|+||||+||||||++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567788887 788999999999999999999996543
No 173
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.78 E-value=0.00042 Score=76.72 Aligned_cols=34 Identities=29% Similarity=0.172 Sum_probs=27.3
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
...++++. .+| +++|+||||+||||+|++|.++.
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 34566777 455 99999999999999999996543
No 174
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.78 E-value=0.00048 Score=70.81 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.+++|.|||||||||++++|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.76 E-value=0.0004 Score=70.29 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|+|||||||||+++.|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 5688999999999999999999854
No 176
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.00062 Score=74.04 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..++|+||.|+||||+++.++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999853
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.73 E-value=0.0026 Score=69.18 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=27.2
Q ss_pred eeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 446 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 446 ~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+++|. ..+++++|+||||+||||++..|+..
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456676 67899999999999999999999754
No 178
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.67 E-value=0.0039 Score=68.81 Aligned_cols=121 Identities=22% Similarity=0.208 Sum_probs=61.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-cccccccccccccccchHHHHHhhcCchh-hHhh-hhhhhhHHhHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLSQ-SLSTFSGHLKQIGNI 528 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~~-~lstfS~~~~~l~~i 528 (843)
+.|+++.|.||+|+|||||...++..... .....|+.. +...-+ .....+|... ++.. ...+ ..+...+...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~-E~s~~~---~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~ 135 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDP---IYARKLGVDIDNLLCSQPDT-GEQALEICDA 135 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC-CCCccH---HHHHHcCCChhheeeeCCCC-HHHHHHHHHH
Confidence 36789999999999999999887533221 112234443 211111 1122333211 1000 0001 1122222222
Q ss_pred HHhCCCCcEEEEecCCCCCChhh------------H----HHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 529 ISQSTSQSLVLLDEIGAGTNPLE------------G----TALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlDp~e------------~----~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
+.....+++|++|.+++-....+ . ..+...+...+.+.+++ ||+++|..
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~-VI~~nq~~ 200 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQIR 200 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCE-EEEEEC--
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 22236799999999987663211 0 12223344445677887 89998853
No 179
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.66 E-value=0.0007 Score=65.31 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+|+||||+||||+|.+|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999854
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.63 E-value=0.002 Score=69.53 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.|+++.|.||+|+|||||...++.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998864
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.62 E-value=0.00058 Score=68.45 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.+++|+|||||||||+++.|+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999654
No 182
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.61 E-value=0.0045 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.6
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...++|+||.|+||||+++.++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998853
No 183
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.60 E-value=0.00062 Score=66.28 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|.+++|+|||||||||+++.|+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999864
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.60 E-value=0.00048 Score=66.73 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.+++|+|||||||||+++.|+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 185
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.59 E-value=0.0006 Score=76.94 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=26.9
Q ss_pred ceeeEEEecCCeEEEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
++.++ +...+.+++|+|||||||||||++|.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 55555 4567789999999999999999998543
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.52 E-value=0.0031 Score=60.78 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...++|+||.|+||||+++.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999998853
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.47 E-value=0.00071 Score=70.74 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+++|+|||||||||++|+|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996
No 188
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.44 E-value=0.0024 Score=63.65 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..++|+||.|+||||+++.++
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.44 E-value=0.00032 Score=81.22 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.2
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+..++++. ..|.+++|+|||||||||||++|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 355666666 66778999999999999999999544
No 190
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.33 E-value=0.00012 Score=76.12 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=23.6
Q ss_pred eEEEecCCeEEEEEccCCCCchhhhhcccch
Q 003163 447 DIFIARKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 447 disL~~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+++|.. .+++|+|||||||||||++|+++
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhcc
Confidence 455544 68899999999999999999654
No 191
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.33 E-value=0.001 Score=72.00 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
++++|+|||||||||||+.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57899999999999999998644
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.31 E-value=0.0012 Score=66.44 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+++|+|||||||||+++.|+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999864
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.31 E-value=0.0022 Score=66.26 Aligned_cols=145 Identities=16% Similarity=0.129 Sum_probs=69.6
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-ccccccc-ccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHI-LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G~~v-pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
..|.+++|+||-|+||||++-.+..-... .....++ |. .... + ..++..++|..-... .+.. ...+...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~-~d~r-~-~~~i~srlG~~~~~~-~~~~----~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK-IDTR-S-IRNIQSRTGTSLPSV-EVES----APEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-CCGG-G-CSSCCCCCCCSSCCE-EESS----THHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec-cCch-H-HHHHHHhcCCCcccc-ccCC----HHHHHHHH
Confidence 56789999999999999987655321110 1111111 22 1111 1 112334444321000 0111 11222222
Q ss_pred Hh---CCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccc-----------hhHHhhhccccceeeeEE
Q 003163 530 SQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-----------GELKTLKYSNDFFENACM 595 (843)
Q Consensus 530 ~~---a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd-----------~el~~~a~~~~~v~ng~v 595 (843)
.. -.++++|++||.-. +++ + +. ..+..+.+.|.. ||++-|+ .++..+|+.+..+..-+.
T Consensus 82 ~~~~~~~~~dvViIDEaQ~-l~~-~---~v-e~l~~L~~~gi~-Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~ 154 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQF-FDD-R---IC-EVANILAENGFV-VIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICN 154 (223)
T ss_dssp HSTTSCTTCCEEEECSGGG-SCT-H---HH-HHHHHHHHTTCE-EEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECT
T ss_pred HHHhhCCCCCEEEEecCcc-CcH-H---HH-HHHHHHHhCCCe-EEEEeccccccCCcCCCcHHHHHHhheEeecceecc
Confidence 21 24589999999943 444 2 22 234556667887 9999993 334456666554432111
Q ss_pred EEecccceeeEEEecCC
Q 003163 596 EFDEVKLKPTYKILWGV 612 (843)
Q Consensus 596 ~fd~~~l~ptY~l~~G~ 612 (843)
+......+++|+..|.
T Consensus 155 -~Cg~~a~~~~r~~~g~ 170 (223)
T 2b8t_A 155 -ECGAEATHSLRKIDGK 170 (223)
T ss_dssp -TTCSEECEEEEEETTE
T ss_pred -ccCCccceeEEecCCC
Confidence 1223334455554443
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.28 E-value=0.0034 Score=68.91 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=48.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-ccccccccccccccchHHHHHh---hcCchhhHhhhhhhhhH-HhHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSVFA---DIGDEQSLSQSLSTFSG-HLKQIG 526 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q~G~~vpa~~~~~i~~~~~i~~---~ig~~q~i~~~lstfS~-~~~~l~ 526 (843)
..|++++|.|++|+|||||+..++...... ...+++.. +.+.-.+..+++. .+.... +.. ..++. +..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl-Ems~~ql~~Rlls~~~~v~~~~-l~~--g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL-EMSAEQLALRALSDLTSINMHD-LES--GRLDDDQWENLA 119 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES-SSCHHHHHHHHHHHHHCCCHHH-HHH--TCCCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHHhhCCCHHH-Hhc--CCCCHHHHHHHH
Confidence 578899999999999999999886433321 11122222 2222222222221 222211 111 12332 344555
Q ss_pred HHHHhCCCCcEEEEecCCCC
Q 003163 527 NIISQSTSQSLVLLDEIGAG 546 (843)
Q Consensus 527 ~il~~a~~p~LLLLDEP~sG 546 (843)
.....+.++++++.|+|+..
T Consensus 120 ~a~~~l~~~~l~I~d~~~~s 139 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYVR 139 (338)
T ss_dssp HHHHHHHHSCEEEECCTTCC
T ss_pred HHHHHHhcCCeEEeCCCCCc
Confidence 55555556778888888543
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.25 E-value=0.0042 Score=66.99 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.1
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..+.|.||.|+|||+|++.|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.24 E-value=0.005 Score=65.88 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++.++|.||+|+||||+.+.|+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345689999999999999999864
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.24 E-value=0.00087 Score=79.01 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=32.0
Q ss_pred cCCccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 439 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 439 ~~~~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
-+...+...+++. ..++.++|+||||+|||||+++|+...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3555666777776 677889999999999999999996543
No 198
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.23 E-value=0.0017 Score=65.75 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+|+||||+||||+|.+|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999999984
No 199
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.23 E-value=0.0051 Score=74.98 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++.++|+||||+|||||+++|+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 445689999999999999999964
No 200
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.22 E-value=0.0013 Score=70.73 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+++++|+||||+||||||++|++
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 467899999999999999999953
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.22 E-value=0.0025 Score=66.92 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|.||.|+||||+.+.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999999853
No 202
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.21 E-value=0.0014 Score=66.53 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|+||||+|||||++.|..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHh
Confidence 3678999999999999999999853
No 203
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.21 E-value=0.0054 Score=63.58 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+||+|+||||+++.|+.
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 78999999999999999964
No 204
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.21 E-value=0.01 Score=64.70 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.++.|.||.|+|||||...++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999999854
No 205
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.21 E-value=0.0015 Score=73.56 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=24.3
Q ss_pred EEEecCCeEEEEEccCCCCchhhhhcccchh
Q 003163 448 IFIARKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 448 isL~~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
+++ ..+++++|+||||+||||+|++|+++.
T Consensus 21 ~~~-~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGF-GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEC-TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEe-cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 444 346789999999999999999996543
No 206
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.16 E-value=0.00056 Score=72.61 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.7
Q ss_pred ccceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 442 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 442 ~~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..+..++++. +.| ++|+||||+|||||+|+|++.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 3456666666 444 899999999999999999653
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.00044 Score=72.72 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=31.1
Q ss_pred CccceeeEEEe-cC---CeEEEEEccCCCCchhhhhcccc
Q 003163 441 AHPVPIDIFIA-RK---TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 441 ~~~V~~disL~-~~---g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++.++++. .. |++++|+||+||||||+.+.|+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45688999998 66 88999999999999999999854
No 208
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.07 E-value=0.0043 Score=63.63 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=28.4
Q ss_pred hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhc-CCeEEEEEccc
Q 003163 531 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHH 577 (843)
Q Consensus 531 ~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~-g~t~vlitTHd 577 (843)
....++++|+..+.+..+..+...+ ..+++.+... ...++|+.||-
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHHHGGGEEEEEECG
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhhccceEEEEEeCC
Confidence 3567899999998877777444433 4455444321 12237888883
No 209
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.05 E-value=0.0017 Score=71.85 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|+||||+|||||+++|.+
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhc
Confidence 4678999999999999999999954
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.03 E-value=0.0018 Score=69.75 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|++++|+||||+|||||+++|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999985
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.02 E-value=0.014 Score=61.82 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCchhhhhcccchh
Q 003163 455 RVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..++|+||+|+||||+.+.|+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999996543
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.02 E-value=0.00078 Score=75.02 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=29.4
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..+++++ +.|++++|+||||+|||||+++|++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 466777777 7788999999999999999999964
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.01 E-value=0.0017 Score=70.77 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
-+++|+||||||||||+++|..+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998543
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.99 E-value=0.0019 Score=64.65 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
+++|+|||||||||+.+.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 215
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.90 E-value=0.0052 Score=73.29 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++.++|+|+||+|||||++.+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHH
Confidence 3567899999999999999999853
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.89 E-value=0.0059 Score=62.65 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.8
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|+.++|.||+||||||++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 46789999999999999988763
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.89 E-value=0.019 Score=64.85 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchh
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
..|.+++|.||+|+|||||...++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999886543
No 218
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.85 E-value=0.0066 Score=64.82 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++|.||.|+|||++.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999853
No 219
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.80 E-value=0.0024 Score=63.64 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.2
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
+++|+|||||||||+.+.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999864
No 220
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.79 E-value=0.0093 Score=68.74 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=23.7
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+..++++. +.| ++|+||||+|||||+|+|+..
T Consensus 55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 34444444 333 899999999999999999653
No 221
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.76 E-value=0.003 Score=63.27 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+++|+||+||||||+.+.|+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999864
No 222
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.76 E-value=0.0041 Score=68.67 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred eEEEecCCeEEEEEccCCCCchhhhhcccc
Q 003163 447 DIFIARKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 447 disL~~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++-+..+.+|+||||+||||+|..|..
T Consensus 18 ~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 18 NSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 445553446899999999999999999964
No 223
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.74 E-value=0.0013 Score=71.30 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|+||||+|||||+++|.+
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcc
Confidence 3578999999999999999999953
No 224
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.003 Score=63.85 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+++|+||+||||||+.+.|+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999853
No 225
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.69 E-value=0.03 Score=62.03 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhh-hcccccccccccccccchHHHHHhhcCchh-hHh-hhhhhhhHHhHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLS-QSLSTFSGHLKQIGNI 528 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~-~~lstfS~~~~~l~~i 528 (843)
+.|+++.|.||.|+|||||...++.... ......|+.. +...-.. ....+|... ++. ....++ .+...+...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~-E~s~~~~---~a~~~g~d~~~l~i~~~~~~-e~~l~~l~~ 146 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA-EHALDPV---YARALGVNTDELLVSQPDNG-EQALEIMEL 146 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCHH---HHHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC-CCChhHH---HHHHcCCCHHHceeecCCcH-HHHHHHHHH
Confidence 4678999999999999999987743221 1112234443 2211111 122333211 100 000111 122222222
Q ss_pred HHhCCCCcEEEEecCCCCCC-h-hh----------HHHHHHHHHHHH----HhcCCeEEEEEccch
Q 003163 529 ISQSTSQSLVLLDEIGAGTN-P-LE----------GTALGMSLLEAF----AESGSLLTIATTHHG 578 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlD-p-~e----------~~al~~~lle~L----~~~g~t~vlitTHd~ 578 (843)
+.....+++|++|.+++=.. . .+ .......++..| .+.+++ ||++.|..
T Consensus 147 l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~-VI~~nq~~ 211 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTA-AIFINQVR 211 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCE-EEEEEEC-
T ss_pred HHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCE-EEEEEecc
Confidence 22246789999999987541 1 00 111122333333 456886 88888854
No 226
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.62 E-value=0.09 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++|+||.|+||||+.+.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998864
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.59 E-value=0.05 Score=58.66 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.5
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|.|+.|+|||||+..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 6789999999999999999988854
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.55 E-value=0.0041 Score=60.77 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|.+++|+|++||||||+.+.+..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999999864
No 229
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.51 E-value=0.0036 Score=61.87 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++|+||||+|||||++.+.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998643
No 230
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.48 E-value=0.002 Score=63.81 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
++++|+||||||||||++.|.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999543
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.47 E-value=0.0017 Score=68.50 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.3
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+..++++. +.| ++|+||||+|||||+++|+..
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 345556666 344 899999999999999999653
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.45 E-value=0.029 Score=61.49 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.7
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...++|+||.|+||||+.+.|+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999853
No 233
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.41 E-value=0.0038 Score=61.85 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhhhcccch
Q 003163 457 LVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli 477 (843)
++|+||||+|||||++.+.+.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998654
No 234
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.27 E-value=0.003 Score=72.98 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=26.2
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
...+++|. .+| +.+|+|+||+||||+|.+|.++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 34566666 344 8999999999999999999544
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.25 E-value=0.064 Score=64.66 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=19.2
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
-++|+||.|+||||+.+.++..
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998643
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.25 E-value=0.0069 Score=62.77 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003163 534 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 580 (843)
Q Consensus 534 ~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el 580 (843)
.|+++|+|||+.--.+.....+.+..+..+...|.. ++.|+|-..+
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgid-VitT~Nlqh~ 129 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGID-VYTTVNVQHL 129 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCE-EEEEEEGGGB
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCC-EEEEcccccc
Confidence 799999999986422333333344444556777877 8888885433
No 237
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.24 E-value=0.005 Score=61.72 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..|.+++|+||+||||||+.+.|.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999984
No 238
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.22 E-value=0.0043 Score=67.40 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..++|+||||+|||||+++|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999754
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.19 E-value=0.015 Score=65.61 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.5
Q ss_pred eeEEEecCCeEEEEEccCCCCchhhhhcccch
Q 003163 446 IDIFIARKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 446 ~disL~~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++++. .+++++|+||||+||||++..++..
T Consensus 91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555 7789999999999999999998654
No 240
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.065 Score=60.67 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-+.+.||.|+|||+|.|.|+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999863
No 241
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.13 E-value=0.021 Score=64.81 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...+++++||+|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467899999999999999988853
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.05 E-value=0.0046 Score=72.13 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccch
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..|.+++|+|||||||||++|+|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 46789999999999999999999654
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.03 E-value=0.012 Score=68.47 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCeEEEEEccCCCCchhhhhcccchh
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAV 478 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~ 478 (843)
.+.+++|+||||+|||||+|+|+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999996543
No 244
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.02 E-value=0.049 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|.||.|+||||+.+.++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999854
No 245
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.97 E-value=0.043 Score=58.92 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++|+||.|+||||+.+.++
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999984
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.97 E-value=0.019 Score=61.76 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhhhcccch
Q 003163 457 LVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igli 477 (843)
++|.||+|+||||+++.++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999998643
No 247
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.90 E-value=0.028 Score=61.64 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=18.8
Q ss_pred CeEEEE--EccCCCCchhhhhccc
Q 003163 454 TRVLVI--TGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~I--tGPNGsGKTTLLK~Ig 475 (843)
+..++| +||.|.|||||++.+.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 456777 9999999999999885
No 248
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.89 E-value=0.089 Score=49.64 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=18.2
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
+.|.||.|+|||++.+.|+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999999853
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.0068 Score=60.39 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.1
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+++|+||+||||||+.+.|+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 250
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.82 E-value=0.0089 Score=58.95 Aligned_cols=28 Identities=25% Similarity=0.229 Sum_probs=21.7
Q ss_pred EEEe-cCCeEEEEEccCCCCchhhhhccc
Q 003163 448 IFIA-RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 448 isL~-~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++. ..+..++|+|+.||||||+.+.++
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445 456789999999999999999985
No 251
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.78 E-value=0.094 Score=51.40 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=17.8
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+||.|+||||+++.++
T Consensus 41 ~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999985
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.71 E-value=0.0092 Score=58.27 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|+||+||||||+.+.++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999985
No 253
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.67 E-value=0.01 Score=61.09 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|.+++|.||+||||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999999999853
No 254
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.66 E-value=0.034 Score=59.90 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|.||.|+|||++.+.++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4489999999999999999853
No 255
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.62 E-value=0.011 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.8
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+++|+|++||||||+.+.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999854
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.60 E-value=0.075 Score=69.16 Aligned_cols=120 Identities=23% Similarity=0.243 Sum_probs=60.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhhc-ccccccccccccccchHHHHHhhcCch-hhHhh-hhhhhhHHhHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQ-SLSTFSGHLKQIGNI 528 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~~-q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~-~lstfS~~~~~l~~i 528 (843)
..|+++.|.||+|+|||||+..++...... ....|+.. +.+.-... ...+|.. +++.. ...+. .++.....-
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~-Ees~~ql~---A~~lGvd~~~L~i~~~~~l-eei~~~l~~ 804 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY---ARKLGVDIDNLLCSQPDTG-EQALEICDA 804 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT-TSCCCHHH---HHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec-cchHHHHH---HHHcCCChhheEEecCCcH-HHHHHHHHH
Confidence 467899999999999999999886433221 11233333 22211111 2223321 11100 00011 122222111
Q ss_pred HHhCCCCcEEEEecCCCCCC-h------------hhHHHHH---HHHHHHHHhcCCeEEEEEccc
Q 003163 529 ISQSTSQSLVLLDEIGAGTN-P------------LEGTALG---MSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlD-p------------~e~~al~---~~lle~L~~~g~t~vlitTHd 577 (843)
+..-..|++|++|+..+-.. + .....+. ..+...+.+.+++ ||+++|-
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~-VIlinql 868 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQI 868 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE-EEEEECE
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 11235799999999987552 1 0112222 2333345677987 8999884
No 257
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.53 E-value=0.028 Score=64.77 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.1
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...++|+||.|+||||+.+.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999853
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.46 E-value=0.1 Score=52.75 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCCC----CCChhhHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003163 532 STSQSLVLLDEIGA----GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 578 (843)
Q Consensus 532 a~~p~LLLLDEP~s----GlDp~e~~al~~~lle~L~~~g~t~vlitTHd~ 578 (843)
...++++++|-.+. .-|+.....+...+.....+.+++ +++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~-vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 35788999996532 224555566666777777788997 89998864
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.37 E-value=0.091 Score=56.71 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.+.|.||.|+|||++.+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999999864
No 260
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.35 E-value=0.036 Score=60.03 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++|+||.|+||||+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999853
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.34 E-value=0.012 Score=56.35 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+||.||||||+.+.|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 262
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.32 E-value=0.075 Score=57.79 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=59.4
Q ss_pred CCeEEEEEccCCCCchhhhhcccchhhh---cccccccccccccccchHHHHHhhcCchh-hHhhhhhhhhH-Hh-HHHH
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLAVMM---AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLSQSLSTFSG-HL-KQIG 526 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli~~~---~q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~~~lstfS~-~~-~~l~ 526 (843)
.| ++.|.||.|+|||||+-.+..-... .....|+.+ +.+.-+ .....+|... ++... ...+. ++ ..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~-E~s~~~---~ra~~lGvd~d~llv~-~~~~~E~~~l~i~ 101 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS-EFGITP---AYLRSMGVDPERVIHT-PVQSLEQLRIDMV 101 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES-SCCCCH---HHHHHTTCCGGGEEEE-ECSBHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec-cchhhH---HHHHHhCCCHHHeEEE-cCCCHHHHHHHHH
Confidence 45 6889999999999996665322111 112345544 222111 1234455431 11110 11122 22 2223
Q ss_pred HHHH--hCCCCcEEEEecCCCCCC-------h--------hhHHHHHH---HHHHHHHhcCCeEEEEEccchh
Q 003163 527 NIIS--QSTSQSLVLLDEIGAGTN-------P--------LEGTALGM---SLLEAFAESGSLLTIATTHHGE 579 (843)
Q Consensus 527 ~il~--~a~~p~LLLLDEP~sGlD-------p--------~e~~al~~---~lle~L~~~g~t~vlitTHd~e 579 (843)
..+. .-..|++|++|=.++=.- + .....+.. .+...+.+.+++ +|+|-|-..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~-vi~tNQV~k 173 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIP-CIAINHTYE 173 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCE-EEEEEEC--
T ss_pred HHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEECCeee
Confidence 3331 235799999998876541 1 11112222 233345667887 999999755
No 263
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.29 E-value=0.044 Score=60.56 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...++|.||.|+|||++.+.|+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3458999999999999999985
No 264
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.28 E-value=0.18 Score=57.19 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|.+++|.|+.|+|||||.-.++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHH
Confidence 5788999999999999999888754
No 265
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.25 E-value=0.032 Score=64.13 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.3
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-+.|.||.|+|||++.+.|+
T Consensus 240 ~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHH
Confidence 47899999999999999985
No 266
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.08 Score=59.89 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+-+.+.||.|+|||++.|+|+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 3478999999999999999863
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.097 Score=59.11 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-+.+.||.|+|||++.|.|+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999863
No 268
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.21 E-value=0.037 Score=57.72 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.|+||.|+||||+.+.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999864
No 269
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.11 E-value=0.015 Score=59.58 Aligned_cols=24 Identities=33% Similarity=0.536 Sum_probs=21.2
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+++|+|+|||||||+.+.|+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999985
No 270
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.09 E-value=0.016 Score=63.66 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
++.+++|+||+|+|||||++.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.07 E-value=0.069 Score=58.46 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-++|.||.|+|||++.+.++.
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999853
No 272
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.01 E-value=0.018 Score=57.87 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|.+++|+|++||||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999854
No 273
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.074 Score=59.58 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
+.+.||.|+|||.|.|.++.
T Consensus 185 vLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHH
Confidence 78999999999999999963
No 274
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.86 E-value=0.045 Score=51.77 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=17.8
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
+.|+||.|+|||++.+.|.
T Consensus 27 vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.86 E-value=0.018 Score=54.72 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=18.2
Q ss_pred eEEEEEccCCCCchhhhhcc
Q 003163 455 RVLVITGPNTGGKTICLKTV 474 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~I 474 (843)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 276
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.84 E-value=0.0085 Score=65.44 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=26.9
Q ss_pred ceeeEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+..++++. ..+.+++|+||||+|||||++.+++.
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 44455554 66788999999999999999998643
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.78 E-value=0.018 Score=60.03 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|||||||||+-+.|+
T Consensus 2 ~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999885
No 278
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.75 E-value=0.019 Score=56.83 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+++|+||+|+|||||++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999999853
No 279
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.73 E-value=0.033 Score=63.01 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.++|.||.|+|||++.+.++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999864
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.65 E-value=0.018 Score=57.80 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.0
Q ss_pred eEEEEEccCCCCchhhhhcc
Q 003163 455 RVLVITGPNTGGKTICLKTV 474 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~I 474 (843)
+.++|+||+|+|||||++.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35799999999999999987
No 281
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.64 E-value=0.023 Score=57.20 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.+++|+|++||||||+.+.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999854
No 282
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.62 E-value=0.022 Score=55.17 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.7
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 283
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.55 E-value=0.085 Score=59.85 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|.||.|+||||+.+.|+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 479999999999999999853
No 284
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.43 E-value=0.025 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.37 E-value=0.13 Score=58.86 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.1
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..|++++|.|+.|+|||||+-.++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHH
Confidence 5788999999999999999888754
No 286
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.37 E-value=0.024 Score=54.16 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|+||+|||||++.+.+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999854
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.34 E-value=0.028 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+|+.||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999999984
No 288
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.34 E-value=0.15 Score=55.23 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..+.|+||.|+||||+.+.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 289
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.33 E-value=0.024 Score=58.96 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.3
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+++|+||+||||||+.+.|+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999853
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.31 E-value=0.032 Score=59.49 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+++|+||+||||||+.+.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999984
No 291
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.30 E-value=0.016 Score=70.72 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.3
Q ss_pred CCeEEEEEccCCCCchhhhhcccch
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++.++|.||||+|||||.|+|+..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 4456899999999999999999654
No 292
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.30 E-value=0.028 Score=55.40 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
...+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999853
No 293
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.30 E-value=0.12 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++|+||.|+||||+.+.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999853
No 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.27 E-value=0.022 Score=55.31 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++|+||+||||||+.+.|+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 295
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.23 E-value=0.023 Score=60.93 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+++|+|+||+|||||++.+.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998543
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.20 E-value=0.028 Score=54.13 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||+||||||+.+.|.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 297
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.13 E-value=0.1 Score=54.08 Aligned_cols=139 Identities=16% Similarity=0.105 Sum_probs=66.6
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-cccc-cccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSG-LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G-~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
..|.+.+++||=|+||||.|--...-... .+.. .+-|. ...+.+ ..+..++|..-... .+... .+ ++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~-~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~ 85 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VA 85 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET-TCCCC-------------CEEE-EESSG-GG------GH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec-CCccch--HHHHhhcCCeeEEE-ecCCH-HH------HH
Confidence 45789999999999999865443211111 1111 11222 112222 23444443321000 01111 01 22
Q ss_pred HhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch-----------hHHhhhccccceeeeEEEEe
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-----------ELKTLKYSNDFFENACMEFD 598 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~-----------el~~~a~~~~~v~ng~v~fd 598 (843)
..+.+.++|++||.---.+ ...+++.+.+.|.. ||++-++. ++..+|+.+..+..-+. +.
T Consensus 86 ~~~~~~dvViIDEaQF~~~-------v~el~~~l~~~gi~-VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~-~C 156 (234)
T 2orv_A 86 QEALGVAVIGIDEGQFFPD-------IVEFCEAMANAGKT-VIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCM-EC 156 (234)
T ss_dssp HHHTTCSEEEESSGGGCTT-------HHHHHHHHHHTTCE-EEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECT-TT
T ss_pred HHhccCCEEEEEchhhhhh-------HHHHHHHHHhCCCE-EEEEecccccccCCcccHHHHHHhcccEEeeeeEec-Cc
Confidence 2226789999999855543 24566777778887 99999993 34456665554432221 12
Q ss_pred cccceeeEEEec
Q 003163 599 EVKLKPTYKILW 610 (843)
Q Consensus 599 ~~~l~ptY~l~~ 610 (843)
+.....++|+..
T Consensus 157 g~~A~~t~R~~~ 168 (234)
T 2orv_A 157 FREAAYTKRLGT 168 (234)
T ss_dssp CSEECEEEESSC
T ss_pred CCcceEEEEEcC
Confidence 333344566543
No 298
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.2 Score=56.91 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-+.+.||.|+|||+|.|+|+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHh
Confidence 478999999999999999963
No 299
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.07 E-value=0.031 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred CeEEEEEccCCCCchhhhhcccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++|+|++|+|||||++.+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999854
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.98 E-value=0.22 Score=64.81 Aligned_cols=120 Identities=22% Similarity=0.205 Sum_probs=61.8
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhh-hcccccccccccccccchHHHHHhhcCch-hhHhh-hhhhhhHHhHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQ-SLSTFSGHLKQIGNI 528 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~-~lstfS~~~~~l~~i 528 (843)
+.|+++.|.||.|+|||||.-.++.... ......|+.. +.+.-.. ....+|.. +++.. ...+ ..+...+...
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~-E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT-TSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc-cCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 4788999999999999999887743222 1122334443 2211111 12233321 11100 0011 1222222222
Q ss_pred HHhCCCCcEEEEecCCCCCChh-------------hHH---HHHHHHHHHHHhcCCeEEEEEccc
Q 003163 529 ISQSTSQSLVLLDEIGAGTNPL-------------EGT---ALGMSLLEAFAESGSLLTIATTHH 577 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlDp~-------------e~~---al~~~lle~L~~~g~t~vlitTHd 577 (843)
+.....+++|++|...+=.... ... .....+...+.+.+++ ||+++|.
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~-VI~inQl 519 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQI 519 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE-EEEEECE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEeec
Confidence 2224589999999998765311 111 2222333344677997 9999885
No 301
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.97 E-value=0.1 Score=55.10 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.2
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
+.|.||.|+||||+.+.++.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 79999999999999999853
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.94 E-value=0.029 Score=54.32 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|++|+|||||++.+.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999854
No 303
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.90 E-value=0.1 Score=54.07 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+.|+||.|+|||++.+.|+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999853
No 304
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.17 Score=57.18 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-+.+.||.|+|||.|.|+|+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHH
Confidence 479999999999999999963
No 305
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.84 E-value=0.071 Score=53.57 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=67.4
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhh-hccc-ccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKS-GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~q~-G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
..|++.+++||-|+||||.+--+..-.. -.+. ..+-|. ...+.+ ...+...+|..-. ....... ..++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~-~d~r~~-~~~i~s~~g~~~~-a~~~~~~-------~~i~ 75 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE-IDNRYS-KEDVVSHMGEKEQ-AVAIKNS-------REIL 75 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------CEEECTTSCEEE-CEEESSS-------THHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCccch-HHHHHhhcCCcee-eEeeCCH-------HHHH
Confidence 4578999999999999988765422111 0010 111111 000100 0011222221100 0000111 1233
Q ss_pred HhCC-CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccch-----------hHHhhhccccceeeeEEEE
Q 003163 530 SQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-----------ELKTLKYSNDFFENACMEF 597 (843)
Q Consensus 530 ~~a~-~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~-----------el~~~a~~~~~v~ng~v~f 597 (843)
..+. +.++|++||--- +|+.. . ..++.+.+.|.. ||++.++. ++..+|+.+.-+..-+. +
T Consensus 76 ~~~~~~~dvViIDEaqf-l~~~~----v-~~l~~l~~~~~~-Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~-~ 147 (191)
T 1xx6_A 76 KYFEEDTEVIAIDEVQF-FDDEI----V-EIVNKIAESGRR-VICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICV-V 147 (191)
T ss_dssp HHCCTTCSEEEECSGGG-SCTHH----H-HHHHHHHHTTCE-EEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECT-T
T ss_pred HHHhccCCEEEEECCCC-CCHHH----H-HHHHHHHhCCCE-EEEEecccccccCcCccHHHHHHHcccEEeeeeEcc-c
Confidence 3333 469999999533 55532 1 245566667887 88888843 44556766544432111 1
Q ss_pred ecccceeeEEEecCCC
Q 003163 598 DEVKLKPTYKILWGVP 613 (843)
Q Consensus 598 d~~~l~ptY~l~~G~~ 613 (843)
.+..-..++|+..|.+
T Consensus 148 Cg~~a~~~~r~~~g~~ 163 (191)
T 1xx6_A 148 CGNPATRTQRLINGKP 163 (191)
T ss_dssp TSSEECEEEEEETTEE
T ss_pred cCCcceEEEEEcCCCc
Confidence 2223344556555543
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.80 E-value=0.033 Score=54.75 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
+++|+|+.||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 579999999999999999853
No 307
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.72 E-value=0.013 Score=63.58 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred ceeeEEEe-cCCeE--EEEEccCCCCchhhhhcccch
Q 003163 444 VPIDIFIA-RKTRV--LVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 444 V~~disL~-~~g~i--~~ItGPNGsGKTTLLK~Igli 477 (843)
+...+... ..|++ ++++||||+||||+++.++..
T Consensus 33 ~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44444433 44555 899999999999999999643
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.69 E-value=0.033 Score=54.25 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|++|+|||||++.+.+
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999854
No 309
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.68 E-value=0.19 Score=66.24 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred cCCeEEEEEccCCCCchhhhhcccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+.++.+.|.||.|+|||||...++.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988853
No 310
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.52 E-value=0.019 Score=57.21 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|.||+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 311
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.50 E-value=0.3 Score=59.34 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+-+.|.||.|+|||+|.|.|+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 347899999999999999985
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.50 E-value=0.035 Score=54.05 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999884
No 313
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.44 E-value=0.16 Score=55.55 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=24.3
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcccchhh
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 479 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igli~~ 479 (843)
.++.+++++-+ .++|+|++|+||||||+.+.+..+
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhCCCc
Confidence 35667777633 589999999999999999976433
No 314
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.33 E-value=0.13 Score=54.77 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++.+.||.|+||||+.+.++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHH
Confidence 467788999999999999985
No 315
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=92.31 E-value=0.6 Score=41.02 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=47.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003163 640 GAASAEINEVIIEMERFKTQFLEHVHEAR------HFLMLSRNLHKNLLRTRRKILEHCASQRF 697 (843)
Q Consensus 640 ~~~~~~~e~~i~~Le~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 697 (843)
.++...++..|+.||.++..++..+.++. .....+...+.+++.+++.++++|.+|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999998764 45667777888889999999999987743
No 316
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=92.30 E-value=0.13 Score=60.06 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=18.7
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.-++|.|..||||||+|++|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI 235 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAML 235 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHH
Confidence 347999999999999999974
No 317
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.28 E-value=0.038 Score=59.28 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.5
Q ss_pred EEEecCCeEEEEEccCCCCchhhhhcccch
Q 003163 448 IFIARKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 448 isL~~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
+++...+++++++||||+||||++..++..
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455534889999999999999999998643
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.27 E-value=0.044 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+|+.||||||+.+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999874
No 319
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.24 E-value=0.1 Score=53.54 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=67.0
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhhh-cccc-cccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSG-LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~~-~q~G-~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
..|.+.+++||=|+||||.|--+..-... .+.. .+-|. ...+.+ ...+...+|..-.. ...... ..++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~-~d~R~g-e~~i~s~~g~~~~a-~~~~~~-------~~~~ 95 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYS-EEDVVSHNGLKVKA-VPVSAS-------KDIF 95 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSG-------GGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCCcch-HHHHHhhcCCeeEE-eecCCH-------HHHH
Confidence 56889999999999999987655321111 1111 11122 111111 01223333221000 000110 0222
Q ss_pred HhCC-CCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchh-----------HHhhhccccceeeeEEEE
Q 003163 530 SQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE-----------LKTLKYSNDFFENACMEF 597 (843)
Q Consensus 530 ~~a~-~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~e-----------l~~~a~~~~~v~ng~v~f 597 (843)
..+. +.++|++||--- +|+.. . .++..+.+.|.. ||++-++.+ +..+|+.+.-+..-+. +
T Consensus 96 ~~~~~~~dvViIDEaQF-~~~~~----V-~~l~~l~~~~~~-Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~-~ 167 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQF-FDGDI----V-EVVQVLANRGYR-VIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCS-A 167 (214)
T ss_dssp GGCCSSCCEEEECCGGG-SCTTH----H-HHHHHHHHTTCE-EEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCT-T
T ss_pred HHHhcCCCEEEEECccc-CCHHH----H-HHHHHHhhCCCE-EEEEecccccccCccccHHHHHHhcccEEeeeeEec-C
Confidence 2222 478999999844 55522 2 345556667887 899988433 4456666555443222 1
Q ss_pred ecccceeeEEEecCCC
Q 003163 598 DEVKLKPTYKILWGVP 613 (843)
Q Consensus 598 d~~~l~ptY~l~~G~~ 613 (843)
.......++|+..|.+
T Consensus 168 Cg~~A~~~~R~~~g~~ 183 (214)
T 2j9r_A 168 CGSPASRTQRLIDGEP 183 (214)
T ss_dssp TSSBCCEEEEEETTEE
T ss_pred cCCcceEEEEEeCCCc
Confidence 2333445566655543
No 320
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.19 E-value=0.042 Score=57.09 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||+||||||+.+.|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999985
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.17 E-value=0.047 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+||.||||||+.+.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999984
No 322
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.14 E-value=0.046 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+|+.||||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 323
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.12 E-value=0.045 Score=53.73 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=18.9
Q ss_pred ceeeEEEecCCeEEEEEccCCCCchhhhhcccc
Q 003163 444 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 444 V~~disL~~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
+..++++....--++|+|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 556777773333479999999999999998853
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.12 E-value=0.044 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
+++|+||+||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 325
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.09 E-value=0.034 Score=56.24 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=56.9
Q ss_pred cCCeEEEEEccCCCCch-hhhhcccchhhhcccccccccccccccchHHHHHhhcCchhh--HhhhhhhhhHHhHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKT-ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS--LSQSLSTFSGHLKQIGNI 528 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKT-TLLK~Igli~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~--i~~~lstfS~~~~~l~~i 528 (843)
..|++..|+||-|+||| -||+.++....-.+...++.+.-..+.. ..+...+|..-. .......|..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~-------- 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEALPACLLRDVAQ-------- 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHHHHSEEEEESSGGGGHH--------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccCCcccceecCCHHHHHH--------
Confidence 45789999999999999 6777775433322222232211111111 112222211000 0001111111
Q ss_pred HHhCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003163 529 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 581 (843)
Q Consensus 529 l~~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el~ 581 (843)
...+.++|++||.== + + + + ..+++.+.+.|.. ||++.++.++.
T Consensus 88 --~~~~~DvIlIDEaQF-f-k-~---~-ve~~~~L~~~gk~-VI~~GL~~DF~ 130 (195)
T 1w4r_A 88 --EALGVAVIGIDEGQF-F-P-D---I-VEFCEAMANAGKT-VIVAALDGTFQ 130 (195)
T ss_dssp --HHHTCSEEEESSGGG-C-T-T---H-HHHHHHHHHTTCE-EEEEEESBCTT
T ss_pred --hccCCCEEEEEchhh-h-H-H---H-HHHHHHHHHCCCe-EEEEecccccc
Confidence 123568999999722 2 2 2 2 2345677788997 99999987764
No 326
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.03 E-value=0.053 Score=53.63 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.0
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 327
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.02 E-value=0.05 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+||.||||||+.+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35679999999999999999985
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.92 E-value=0.053 Score=52.71 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.4
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+||.||||||+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.86 E-value=0.051 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...++|+||.||||||+.+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999984
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.81 E-value=0.052 Score=53.19 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=18.4
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+||.||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 331
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.69 E-value=0.06 Score=65.93 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=19.9
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
..+.|+||+|+|||++.+.|+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999643
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.69 E-value=0.06 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+|+.||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999985
No 333
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.62 E-value=0.12 Score=55.22 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-+.|+||.|+|||++.+.|..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 478999999999999999853
No 334
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.59 E-value=0.58 Score=47.21 Aligned_cols=54 Identities=17% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCCcEEEEecCCCC--CChhhHHHHHHHHHHHHHhc--CCeEEEEEccc--hhHHhhhcccccee
Q 003163 533 TSQSLVLLDEIGAG--TNPLEGTALGMSLLEAFAES--GSLLTIATTHH--GELKTLKYSNDFFE 591 (843)
Q Consensus 533 ~~p~LLLLDEP~sG--lDp~e~~al~~~lle~L~~~--g~t~vlitTHd--~el~~~a~~~~~v~ 591 (843)
...+||||||.+.. ++..... .+++.+.++ ... ||+|+++ .++..+||.+-.|.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~----ev~~~l~~Rp~~~~-vIlTGr~ap~~l~e~AD~VTem~ 178 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLE----EVISALNARPGHQT-VIITGRGCHRDILDLADTVSELR 178 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHH----HHHHHHHTSCTTCE-EEEECSSCCHHHHHHCSEEEECC
T ss_pred CCCCEEEEeCCCccccCCCCCHH----HHHHHHHhCcCCCE-EEEECCCCcHHHHHhCcceeeec
Confidence 56799999999653 1222222 244444443 455 8999987 46667887655443
No 335
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.51 E-value=0.4 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||-|+|||||++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 678999999999999999874
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.47 E-value=0.064 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+|+.||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999985
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.42 E-value=0.06 Score=53.15 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.7
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|++|||||||+..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 338
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.33 E-value=0.34 Score=64.05 Aligned_cols=119 Identities=22% Similarity=0.236 Sum_probs=63.2
Q ss_pred cCCeEEEEEccCCCCchhhhhcccchhh-hcccccccccccccccchHHHHHhhcCchh-hHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Igli~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~~~lstfS~~~~~l~~il 529 (843)
+.++.++|+||.|+|||||...++.-.. .+..+.|+.. +...-.+. ...+|..- .+...-...+....++...+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~-ee~~~~L~---a~~~G~dl~~l~~~~pd~~e~~~~i~~~l 1154 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEICDAL 1154 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT-TSCCCHHH---HHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc-cccHHHHH---HHHcCCChhHheeecCcchHHHHHHHHHH
Confidence 5778899999999999999998853222 2334455554 22211111 12222110 00000001122233444455
Q ss_pred HhCCCCcEEEEecCCCCCChhh-----------------HHHHHHHHHHHHHhcCCeEEEEEcc
Q 003163 530 SQSTSQSLVLLDEIGAGTNPLE-----------------GTALGMSLLEAFAESGSLLTIATTH 576 (843)
Q Consensus 530 ~~a~~p~LLLLDEP~sGlDp~e-----------------~~al~~~lle~L~~~g~t~vlitTH 576 (843)
.....|++|++|+.+. +.|.. .......+...+.+.+++ +|+|..
T Consensus 1155 ~~~~~~dlvVIDsl~~-L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~st-iI~tN~ 1216 (2050)
T 3cmu_A 1155 ARSGAVDVIVVDSVAA-LTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQ 1216 (2050)
T ss_dssp HHHTCCSEEEESCGGG-CCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCE-EEEEEC
T ss_pred HHhCCCCEEEECCccc-ccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeE-EEEecC
Confidence 5567899999999643 32211 112234566667778876 666544
No 339
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.28 E-value=0.072 Score=55.19 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=18.2
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.|.+
T Consensus 24 I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 78999999999999999853
No 340
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.28 E-value=0.067 Score=57.10 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=17.2
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...+++|+||.||||||+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999985
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.88 E-value=0.079 Score=51.41 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|+.||||||+.+.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999884
No 342
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.69 E-value=0.055 Score=59.78 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.4
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..++|+||+||||||+++.+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 345689999999999999999854
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.69 E-value=0.08 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.6
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999884
No 344
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.66 E-value=0.035 Score=54.98 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=24.9
Q ss_pred cceeeEEEe-cCCeEEEEEccCCCCchhhhhcccc
Q 003163 443 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 443 ~V~~disL~-~~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..++++. ...+ ++|+|++|+|||||++.+..
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 355566666 3444 78999999999999999853
No 345
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.47 E-value=0.33 Score=52.46 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..+.+.||.|.||||+.+.++.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHH
Confidence 4589999999999999998853
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.47 E-value=0.07 Score=51.13 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.7
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|+.||||||+.+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.44 E-value=0.086 Score=51.29 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.4
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+|+.||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999984
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.41 E-value=0.098 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.9
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...+++|+||.||||||+.+.|+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999998874
No 349
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.24 E-value=0.095 Score=54.66 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+|+.||||||+.+.|+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.17 E-value=0.089 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+++|+||.||||||+.+.|+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999884
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.14 E-value=0.092 Score=52.49 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.9
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
No 352
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.08 E-value=0.57 Score=48.09 Aligned_cols=142 Identities=13% Similarity=0.176 Sum_probs=66.3
Q ss_pred cCCeEEEEEccCCCCchh-hhhcccchhhhcc-cccccccccccccchHHHHHhhcCchhhHhhhhhhhhHHhHHHHHHH
Q 003163 452 RKTRVLVITGPNTGGKTI-CLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 529 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTT-LLK~Igli~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~~l~~il 529 (843)
..|.+.+|+||-|+|||| ||+.+-....-.+ ...+-|. ...+.+ ...+..++|..-... .+... .. +.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~-~D~R~~-~~~I~Sr~G~~~~a~-~v~~~-~d------i~ 95 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA-IDDRYH-KEKVVSHNGNAIEAI-NISKA-SE------IM 95 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEEE-EESSG-GG------GG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec-cCCcch-hhhHHHhcCCceeeE-EeCCH-HH------HH
Confidence 568999999999999999 7777522111111 1112222 111110 112444444321100 00000 00 01
Q ss_pred H-hCCCCcEEEEecCCCCCChhhHHHHHHHHHHHHHhcCCeEEEEEccchhH-----------HhhhccccceeeeEEEE
Q 003163 530 S-QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-----------KTLKYSNDFFENACMEF 597 (843)
Q Consensus 530 ~-~a~~p~LLLLDEP~sGlDp~e~~al~~~lle~L~~~g~t~vlitTHd~el-----------~~~a~~~~~v~ng~v~f 597 (843)
. ...+.++|++||-=- +|+ .+. ..+..+.+.|.. ||+.-=+.++ ..+|+.+.-+..-++ +
T Consensus 96 ~~i~~~~dvV~IDEaQF-f~~----~~v-~~l~~la~~gi~-Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~-~ 167 (219)
T 3e2i_A 96 THDLTNVDVIGIDEVQF-FDD----EIV-SIVEKLSADGHR-VIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCA-V 167 (219)
T ss_dssp GSCCTTCSEEEECCGGG-SCT----HHH-HHHHHHHHTTCE-EEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECT-T
T ss_pred HHHhcCCCEEEEechhc-CCH----HHH-HHHHHHHHCCCE-EEEeecccccccCCCccHHHHHHhcceEEEeeeEcc-C
Confidence 1 125789999999622 343 132 344555677887 7776555443 346666655543221 2
Q ss_pred ecccceeeEEEecC
Q 003163 598 DEVKLKPTYKILWG 611 (843)
Q Consensus 598 d~~~l~ptY~l~~G 611 (843)
.......++|+..|
T Consensus 168 CG~~A~~~~R~~~g 181 (219)
T 3e2i_A 168 CGSSSSRTQRLING 181 (219)
T ss_dssp TCSEECEEEEEETT
T ss_pred CCCcceEEEEEECC
Confidence 23333455666555
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.07 E-value=0.097 Score=52.72 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+||.||||||+.+.|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999885
No 354
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.04 E-value=0.088 Score=58.10 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCchhhhhcccch
Q 003163 455 RVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+++|+|+||+|||||++.+.+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999998643
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.98 E-value=0.089 Score=53.08 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||.||||||+.+.|+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.85 E-value=0.1 Score=49.77 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=18.2
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++|+|+.||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999984
No 357
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.84 E-value=0.61 Score=53.89 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++++|+|+-|.|||||.+.+.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999875
No 358
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.70 E-value=0.091 Score=54.96 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.1
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999998543
No 359
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.67 E-value=0.092 Score=59.15 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.4
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
-++|+|+||+|||||++.+.+.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999998543
No 360
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=89.65 E-value=0.88 Score=36.53 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=34.4
Q ss_pred CCCCCCEEEEccC---CceEEEEEecCCCceEEEEEce----eEEEeecCCee
Q 003163 796 LPNVGDLVHVSSF---GKKGTVIKVEPSKEEIVVQVGN----MKWIMKFTDIV 841 (843)
Q Consensus 796 ~~~vGd~V~v~~~---~~~G~V~~~~~~~~~~~Vq~G~----~k~~v~~~~l~ 841 (843)
.+++||.|+|.+. |..|+|.+++.+++++.|.+-. ..++++.++++
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~ve 56 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV 56 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEE
Confidence 4789999999887 6889999998777788777643 34555555543
No 361
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.62 E-value=0.094 Score=57.78 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=18.5
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+||+|+||||+.++|+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 88999999999999999864
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.60 E-value=0.09 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.6
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|+.||||||+-+.|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999884
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.58 E-value=0.1 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|++|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999984
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.54 E-value=0.11 Score=52.01 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.8
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
No 365
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.50 E-value=0.12 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.4
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+++|+||.||||||+.+.|+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999999884
No 366
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.31 E-value=0.33 Score=52.64 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.9
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+..+.|.||.|.|||++.+.++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44567999999999999999985
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.28 E-value=0.12 Score=52.51 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999884
No 368
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.25 E-value=0.13 Score=50.90 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=18.0
Q ss_pred CeEEEEEccCCCCchhhhhcc
Q 003163 454 TRVLVITGPNTGGKTICLKTV 474 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~I 474 (843)
|.+.+|+||.|+||||++-.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 678999999999999997433
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.24 E-value=0.13 Score=53.13 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+++|+||.||||||+-+.|.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999874
No 370
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.04 E-value=8.9 Score=34.20 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003163 643 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 720 (843)
Q Consensus 643 ~~~~e~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~a~~~a~~~l~~~~~e 720 (843)
...+-.-|..|+.+...++.++..+...+.+........+.....+..+.+.|. ..--.+|+.++..++++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT-------asLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT-------ASLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555554444444455555555555544333332 23356778888776544
No 371
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.73 E-value=0.11 Score=57.18 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=22.3
Q ss_pred ccceeeEEEecCCeEEEEEccCCCCchhhhhccc
Q 003163 442 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 442 ~~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+..++++. ++|+|+||+|||||+++|.
T Consensus 30 k~~~~~~~~~-----I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 30 KSVKKGFEFT-----LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp HHHHHCCEEC-----EEECCCTTSCHHHHHHHHT
T ss_pred eeecCCCCEE-----EEEEcCCCCCHHHHHHHHh
Confidence 3445555553 5999999999999999974
No 372
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.72 E-value=0.13 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-++|+|++|+|||||++.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999853
No 373
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.59 E-value=0.13 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|+.|+|||||++.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999853
No 374
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.50 E-value=0.15 Score=53.84 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.45 E-value=0.14 Score=49.04 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
++++|+|+-||||||+-+.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.33 E-value=0.17 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 377
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.24 E-value=0.15 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.2
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...+++|+|+-||||||+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999985
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.12 E-value=0.3 Score=49.60 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=25.6
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhccc
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.......+...+..++|+||.|+|||||...++
T Consensus 23 ~~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 23 RSMHGVLVDIYGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp CCEESEEEEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred eeeeEEEEEECCEEEEEECCCCCCHHHHHHHHH
Confidence 344555566677889999999999999987763
No 379
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.12 E-value=0.11 Score=58.07 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.0
Q ss_pred eEEEe-cCCeEEEEEccCCCCchhhhhcccch
Q 003163 447 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 447 disL~-~~g~i~~ItGPNGsGKTTLLK~Igli 477 (843)
|+.+. ..|+.++|+||+|+|||||++.|+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 45555 56677999999999999999988543
No 380
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.84 E-value=0.19 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.7
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|.||.||||||+.+.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999984
No 381
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.83 E-value=0.16 Score=47.59 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999984
No 382
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.72 E-value=0.16 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++++|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 383
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.70 E-value=0.16 Score=47.24 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999884
No 384
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.69 E-value=0.22 Score=59.80 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.-++|+||.|+||||+.+.++.
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHH
Confidence 4478999999999999999864
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.61 E-value=0.2 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||.||||||+.+.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999884
No 386
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.51 E-value=0.2 Score=51.73 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=17.9
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|.||.||||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999999984
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.32 E-value=0.19 Score=50.45 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+||.||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 388
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.20 E-value=0.18 Score=47.18 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
No 389
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.19 E-value=0.18 Score=46.91 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 390
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.11 E-value=0.19 Score=46.91 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 391
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.09 E-value=0.19 Score=47.22 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 78999999999999999843
No 392
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.04 E-value=0.19 Score=47.78 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 393
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.04 E-value=0.19 Score=47.68 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 12 i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999853
No 394
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.98 E-value=0.19 Score=47.16 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999884
No 395
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.90 E-value=0.19 Score=47.10 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 396
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.86 E-value=0.22 Score=55.84 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
....+++|+||+||||||+.+.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999874
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.85 E-value=0.22 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|.||.||||||+.+.|.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999984
No 398
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.84 E-value=0.2 Score=47.11 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999874
No 399
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.81 E-value=0.2 Score=47.06 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999984
No 400
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.80 E-value=0.64 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.|+.++|.||+|.|||||++.|..
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHh
Confidence 455689999999999999998843
No 401
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.70 E-value=0.82 Score=52.80 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.++++|+||-|.|||||.+.+.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999998874
No 402
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.70 E-value=0.2 Score=46.81 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 403
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.66 E-value=0.2 Score=47.09 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 404
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.65 E-value=0.49 Score=56.92 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.5
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
.+.|+||.|+|||++.+.|+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999644
No 405
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.64 E-value=0.2 Score=47.49 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.62 E-value=0.21 Score=54.65 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||+||||||+.+.|+
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 478999999999999998874
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.58 E-value=0.23 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|.|+.||||||.++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999884
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.58 E-value=0.23 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|+||+|+|||||...|+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999999998874
No 409
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.55 E-value=0.27 Score=50.98 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.9
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+++|.|+-||||||+.+.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999985
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.53 E-value=0.2 Score=48.49 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-++|+|+.|+|||||++.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999853
No 411
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.46 E-value=0.22 Score=50.14 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+..++|+||.||||||+.+.|+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 412
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.44 E-value=0.35 Score=48.10 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=24.6
Q ss_pred cceeeEEEecCCeEEEEEccCCCCchhhhhcc
Q 003163 443 PVPIDIFIARKTRVLVITGPNTGGKTICLKTV 474 (843)
Q Consensus 443 ~V~~disL~~~g~i~~ItGPNGsGKTTLLK~I 474 (843)
.......+.-.|.-++|+||+|+||||+...+
T Consensus 5 ~~lHas~v~v~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 5 QTWHANFLVIDKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEESEEEEETTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEEEEECCEEEEEEcCCCCCHHHHHHHH
Confidence 34444455567788999999999999987765
No 413
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.44 E-value=0.21 Score=48.15 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.0
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
No 414
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.42 E-value=0.21 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 78999999999999998843
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=86.39 E-value=0.21 Score=46.93 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.0
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999984
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.23 E-value=0.22 Score=47.90 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
No 417
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.18 E-value=0.27 Score=46.69 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhhhcccc
Q 003163 455 RVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Igl 476 (843)
..++|+|+.|+|||||++.+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3479999999999999999843
No 418
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.15 E-value=0.25 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.9
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
+.+++|.|+-||||||+.+.|+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.94 E-value=0.24 Score=53.77 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||+||||||+-+.|+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 420
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.84 E-value=0.23 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998843
No 421
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=85.74 E-value=0.23 Score=55.54 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCCchhhhhcccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.+..++|+|+||+||||||+.+.+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 344589999999999999999954
No 422
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.62 E-value=0.24 Score=47.36 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 423
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.58 E-value=0.25 Score=46.79 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 424
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.56 E-value=0.61 Score=50.01 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+.+.||.|.||||+.+.++
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 425
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.55 E-value=0.23 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+|+.||||||+.+.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999874
No 426
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.51 E-value=0.3 Score=49.96 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.9
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
...++++|+||.||||||.-+.|+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998874
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.49 E-value=0.27 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+++|+||+|+|||||...++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3578999999999999999884
No 428
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.49 E-value=0.25 Score=46.17 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 429
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.47 E-value=0.28 Score=49.95 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.5
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..+..++|+|+.||||||+.+.|+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999999985
No 430
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=85.46 E-value=0.24 Score=52.31 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|++|+|||||++.+.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 479999999999999999854
No 431
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=85.34 E-value=0.51 Score=56.67 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEEccCCCCchhhhhcccch
Q 003163 456 VLVITGPNTGGKTICLKTVGLA 477 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igli 477 (843)
.++|+||.|+|||++.+.++..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998643
No 432
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.33 E-value=0.26 Score=47.00 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999984
No 433
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.31 E-value=0.26 Score=47.95 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.0
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999998763
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.30 E-value=0.26 Score=47.24 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 14 i~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999884
No 435
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.30 E-value=0.26 Score=47.83 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999998743
No 436
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.23 E-value=0.28 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEECSTTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 437
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.19 E-value=0.27 Score=46.00 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 438
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.11 E-value=0.27 Score=47.16 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 439
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.07 E-value=0.27 Score=48.81 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999884
No 440
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.03 E-value=0.27 Score=46.47 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999843
No 441
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=84.77 E-value=0.62 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|+.|+|||||++.+.+
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 589999999999999999854
No 442
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=84.72 E-value=0.28 Score=47.31 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998843
No 443
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=84.67 E-value=0.29 Score=46.44 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999998853
No 444
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=84.61 E-value=0.29 Score=46.83 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 445
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.54 E-value=0.36 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.5
Q ss_pred cCCeEEEEEccCCCCchhhhhccc
Q 003163 452 RKTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 452 ~~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..|.+++|.|+.||||||+.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999999999985
No 446
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.53 E-value=0.29 Score=47.20 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999984
No 447
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.45 E-value=0.3 Score=47.65 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 448
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.44 E-value=0.3 Score=46.41 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 449
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.42 E-value=0.3 Score=47.02 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.35 E-value=0.3 Score=46.97 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=17.3
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 17 i~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999998774
No 451
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.21 E-value=0.31 Score=46.30 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 452
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.15 E-value=0.35 Score=49.41 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.|.+++|.||.||||||..+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999984
No 453
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.09 E-value=0.35 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.6
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..++|+|+.|+|||||+..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 454
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.07 E-value=0.32 Score=46.49 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 455
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.97 E-value=0.32 Score=47.55 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 456
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.86 E-value=0.33 Score=46.94 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 457
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=83.85 E-value=0.34 Score=46.31 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=8.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 458
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=83.82 E-value=0.33 Score=46.66 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.5
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-++|+|+.|+|||||++.+..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999853
No 459
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=83.81 E-value=0.35 Score=46.85 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=18.3
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999854
No 460
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.79 E-value=0.33 Score=46.27 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999998874
No 461
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.54 E-value=0.34 Score=46.94 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999984
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.31 E-value=0.35 Score=47.06 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999884
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=83.21 E-value=0.36 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 464
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.04 E-value=0.37 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998843
No 465
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.98 E-value=0.42 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.1
Q ss_pred CCeEEEEEccCCCCchhhhhccc
Q 003163 453 KTRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 453 ~g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+.+++|+||.|+|||||-..|+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999988874
No 466
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.85 E-value=0.37 Score=47.81 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 467
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=82.84 E-value=0.41 Score=47.40 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 14 i~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999853
No 468
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=82.69 E-value=0.39 Score=46.83 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 469
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=82.67 E-value=0.45 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 36 i~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEECCTTSCCTTTTTSSB
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999985
No 470
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.64 E-value=0.39 Score=46.62 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998853
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.59 E-value=0.39 Score=46.58 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999884
No 472
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.55 E-value=0.4 Score=45.62 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 473
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.54 E-value=0.39 Score=46.32 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999884
No 474
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.27 E-value=0.21 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.2
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+||.|+||||+.+.++.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999864
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.21 E-value=0.42 Score=46.05 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 18 i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.16 E-value=0.41 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999884
No 477
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=82.12 E-value=0.42 Score=46.70 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 478
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.08 E-value=0.42 Score=46.19 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 479
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=82.07 E-value=0.42 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 27 i~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999853
No 480
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=82.06 E-value=0.5 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.5
Q ss_pred CeEEEEEccCCCCchhhhhccc
Q 003163 454 TRVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 454 g~i~~ItGPNGsGKTTLLK~Ig 475 (843)
|.+++|=|+-||||||..+.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999999874
No 481
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=81.98 E-value=0.43 Score=46.17 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
-++|+|+.|+|||||++.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999853
No 482
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.98 E-value=0.43 Score=46.35 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 26 i~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999843
No 483
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=81.87 E-value=0.43 Score=46.22 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 484
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.83 E-value=0.44 Score=46.47 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 31 i~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998843
No 485
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=81.80 E-value=0.41 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.77 E-value=0.35 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=21.0
Q ss_pred cceeeEEEec-CCeEEEEEccCCCCchhhhhcccc
Q 003163 443 PVPIDIFIAR-KTRVLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 443 ~V~~disL~~-~g~i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++.++.+.. ..--++|+|+.|+|||||++.+..
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 13 LGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp ------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3555555552 222478999999999999998843
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=81.76 E-value=0.44 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999984
No 488
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.73 E-value=0.45 Score=48.10 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
+++|+||.||||+|.-+.|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999884
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=81.66 E-value=0.44 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=18.0
Q ss_pred EEEEEccCCCCchhhhhccc
Q 003163 456 VLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Ig 475 (843)
-++|+|+.|+|||||++.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999884
No 490
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=81.65 E-value=0.44 Score=45.98 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 25 i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEETTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 491
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.60 E-value=0.47 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.4
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
..++|+|+.|+|||||+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999874
No 492
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=81.31 E-value=0.46 Score=47.23 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998853
No 493
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=81.26 E-value=0.47 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|+.|+|||||++.+..
T Consensus 23 i~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998843
No 494
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=81.26 E-value=0.46 Score=48.87 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhhhcccc
Q 003163 456 VLVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 456 i~~ItGPNGsGKTTLLK~Igl 476 (843)
.++|+|+.|+|||||++.+.+
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999843
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=81.16 E-value=0.51 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhhhccc
Q 003163 455 RVLVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 455 ~i~~ItGPNGsGKTTLLK~Ig 475 (843)
.+++|+||.|+|||||.+.|+
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 578999999999999998874
No 496
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.12 E-value=0.48 Score=46.50 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 497
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=80.96 E-value=0.48 Score=46.29 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=16.7
Q ss_pred EEEEccCCCCchhhhhcc
Q 003163 457 LVITGPNTGGKTICLKTV 474 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~I 474 (843)
++|+|+.|+|||||++.+
T Consensus 23 i~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999999866
No 498
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=80.93 E-value=0.47 Score=49.57 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||+++|.
T Consensus 11 I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEECTTSSHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999863
No 499
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=80.92 E-value=0.48 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhhhccc
Q 003163 457 LVITGPNTGGKTICLKTVG 475 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Ig 475 (843)
++|+|+.|+|||||++.+.
T Consensus 37 i~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999984
No 500
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=80.89 E-value=0.46 Score=52.46 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEccCCCCchhhhhcccc
Q 003163 457 LVITGPNTGGKTICLKTVGL 476 (843)
Q Consensus 457 ~~ItGPNGsGKTTLLK~Igl 476 (843)
++|+|++|+|||||++.+..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999999854
Done!