BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003164
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 292/861 (33%), Positives = 461/861 (53%), Gaps = 54/861 (6%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAG--VGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKAGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDAVIAKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 AALNGKFKLPTKNEFIPTNFEI----LPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES ++W +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWG----CNTNIKESEKHSKS 822
D+ E LK++ K D+I +YK L +P+ +++V V N + E +
Sbjct: 890 DRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDI 949
Query: 823 AL----------VIKDLTAFK 833
L VI+++TAFK
Sbjct: 950 NLSQAPALPQPEVIQNMTAFK 970
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/820 (34%), Positives = 448/820 (54%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 122 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 181
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 182 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 241
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 242 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 301
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 302 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 355
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 356 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 415
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 416 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 473
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 474 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 529
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 530 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 589
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 590 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 649
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 650 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 707
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 708 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 757
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 758 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 816
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES ++W +I ++Y F
Sbjct: 817 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 876
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K D+I +YK L +P+ +++V V
Sbjct: 877 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHV 916
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 468 bits (1203), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/820 (34%), Positives = 448/820 (54%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES ++W +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K D+I +YK L +P+ +++V V
Sbjct: 890 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHV 929
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/820 (34%), Positives = 448/820 (54%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES ++W +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K D+I +YK L +P+ +++V V
Sbjct: 890 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHV 929
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 283/820 (34%), Positives = 448/820 (54%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 164 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 223
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 224 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 283
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 284 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 343
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 344 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 397
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 398 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 457
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 458 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 515
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 516 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 571
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 572 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 631
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 632 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 691
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 692 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 749
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 750 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 799
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 800 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 858
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES ++W +I ++Y F
Sbjct: 859 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 918
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K D+I +YK L +P+ +++V V
Sbjct: 919 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHV 958
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 290/861 (33%), Positives = 463/861 (53%), Gaps = 54/861 (6%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+SPL A +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM +VV+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+EL+D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
AN F Y + + + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ NS IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ ES +++ +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYYGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV-------------WGCNTNI 813
D+ E LK++ K D+I +YK L +P+ +++V V + C +I
Sbjct: 890 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDI 949
Query: 814 KESEKHS-KSALVIKDLTAFK 833
S+ + VI+++T FK
Sbjct: 950 NLSQAPALPQPEVIQNMTEFK 970
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/820 (33%), Positives = 440/820 (53%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 164 RFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 223
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V
Sbjct: 224 YTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNV 283
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG
Sbjct: 284 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGP 343
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 344 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 397
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E
Sbjct: 398 IQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLE 457
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 458 EFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN- 515
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+
Sbjct: 516 ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPK 571
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
A F Y + +C + L++ LLKD LNE Y A +A L + + L V
Sbjct: 572 ACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 631
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI +F RF++IKE +R+L N +P H+ Y ++
Sbjct: 632 KGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 691
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ + + +
Sbjct: 692 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTL-- 749
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ N IE+Y+Q + M
Sbjct: 750 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGIEIYYQTD----M 799
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 800 QSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 858
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ E ++W +I ++Y +
Sbjct: 859 LESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNY 918
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K+D+I +YK L +P+ +++V V
Sbjct: 919 DRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHKVSVHV 958
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 278/820 (33%), Positives = 440/820 (53%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 123 RFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 182
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V
Sbjct: 183 YTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNV 242
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG
Sbjct: 243 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGP 302
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 303 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 356
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E
Sbjct: 357 IQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLE 416
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 417 EFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN- 474
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+
Sbjct: 475 ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPK 530
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
A F Y + +C + L++ LLKD LNE Y A +A L + + L V
Sbjct: 531 ACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 590
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI +F RF++IKE +R+L N +P H+ Y ++
Sbjct: 591 KGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 650
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ + + +
Sbjct: 651 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTL-- 708
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ N IE+Y+Q + M
Sbjct: 709 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGIEIYYQTD----M 758
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 759 QSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 817
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ E ++W +I ++Y +
Sbjct: 818 LESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNY 877
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K+D+I +YK L +P+ +++V V
Sbjct: 878 DRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHKVSVHV 917
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 278/820 (33%), Positives = 440/820 (53%), Gaps = 40/820 (4%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 164 RFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 223
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++E+++K + YY LM + V+G E LD L + VV+LF+ V
Sbjct: 224 YTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNV 283
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L Q Y YL HL+GHEG
Sbjct: 284 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGP 343
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 344 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 397
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+E +D+ + FRF +++ Y +++AG L YP V+ EY+ E
Sbjct: 398 IQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLE 457
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 458 EFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-RTEQWYGTQYKQEAIPEDVIQKWQN- 515
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I A + D P I D + + W+K D+ F LP+
Sbjct: 516 ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATPYPALIKDTAMSKLWFKQDDKFFLPK 571
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
A F Y + +C + L++ LLKD LNE Y A +A L + + L V
Sbjct: 572 ACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 631
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI +F RF++IKE +R+L N +P H+ Y ++
Sbjct: 632 KGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 691
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ + + +
Sbjct: 692 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTL-- 749
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ N IE+Y+Q + M
Sbjct: 750 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQRRNEVHNNCGIEIYYQTD----M 799
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 800 QSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 858
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ E ++W +I ++Y +
Sbjct: 859 LESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNY 918
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV 806
D+ E LK++ K+D+I +YK L +P+ +++V V
Sbjct: 919 DRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHKVSVHV 958
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 453 bits (1166), Expect = e-127, Method: Compositional matrix adjust.
Identities = 285/861 (33%), Positives = 457/861 (53%), Gaps = 54/861 (6%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM + V+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+E +D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
A F Y + +C + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ N IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLGY+V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ E ++W +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV-------------WGCNTNI 813
D+ E LK++ K D+I +YK L +P+ +++V V + C +I
Sbjct: 890 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDI 949
Query: 814 KESEKHS-KSALVIKDLTAFK 833
S+ + VI+++T FK
Sbjct: 950 NLSQAPALPQPEVIQNMTEFK 970
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 284/861 (32%), Positives = 457/861 (53%), Gaps = 54/861 (6%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
RF+QFF+ PL +REV AVDSE + + NDA RL QL+ T H F+KF GNK
Sbjct: 135 RFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNK 194
Query: 62 KSL-IGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQ 120
+L ++GI+++++++K + YY LM + V+G E LD L + VV+LF+ V
Sbjct: 195 YTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKNV 254
Query: 121 IKPQFTVEGTIWKACK-LFRLEAVKDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
P+F + K L+++ +KD+ L +T+ +P L + Y YL HL+GHEG
Sbjct: 255 PLPEFPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGP 314
Query: 180 GSLHSFLKGRGWATSISAGV--GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237
GSL S LK +GW ++ G G G F++++ LT+ GL + DII ++QY
Sbjct: 315 GSLLSELKSKGWVNTLVGGQKEGARGF------MFFIINVDLTEEGLLHVEDIILHMFQY 368
Query: 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYE 297
I+ LR PQ+W+F+E +D+ + FRF +++ Y +++AG L YP E V+ EY+ E
Sbjct: 369 IQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLE 428
Query: 298 VWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNP 357
+ ++I+ +L PEN+R+ +VSKSF D E W+G++Y +E I +++ W+N
Sbjct: 429 EFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-RTEEWYGTQYKQEAIPDEVIKKWQN- 486
Query: 358 PEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPR 417
+++ +LP++NEFIPT+F I + + P I D + + W+K D+ F LP+
Sbjct: 487 ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATPYPALIKDTAMSKLWFKQDDKFFLPK 542
Query: 418 ANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477
A F Y + +C + L++ LLKD LNE Y A +A L + + L V
Sbjct: 543 ACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602
Query: 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLC 536
G+NDK P+LL KI+ +F + RF++IKE +R+L N +P H+ Y ++
Sbjct: 603 KGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662
Query: 537 QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSV 596
+ + DE L ++L L AFIP+L S+L+IE L HGN++++ A+ I + +
Sbjct: 663 EVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTL-- 720
Query: 597 QPLPIEMRHQECVICLPSGANLVRNVSV----------KNKCETNSVIELYFQIEQEKGM 646
+ H LPS R V + +N+ N IE+Y+Q + M
Sbjct: 721 ------IEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTD----M 770
Query: 647 ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 706
+ T ++LF +I+ EP FN LRTKEQLG++V PR + G F IQS K P Y
Sbjct: 771 QSTSENMFLELFCQIISEPCFNTLRTKEQLGFIVFSGPRRANGIQGLRFIIQSEK-PPHY 829
Query: 707 LQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766
L+ R++ F+ +F+ + L + L+K L+ E ++W +I ++Y F
Sbjct: 830 LESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNF 889
Query: 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRV-------------WGCNTNI 813
D+ E LK++ K D+I +YK L +P+ +++V V + C +I
Sbjct: 890 DRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHKVSVHVLAREMDSCPVVGEFPCQNDI 949
Query: 814 KESEKHS-KSALVIKDLTAFK 833
S+ + VI+++T FK
Sbjct: 950 NLSQAPALPQPEVIQNMTEFK 970
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 181/779 (23%), Positives = 335/779 (43%), Gaps = 39/779 (5%)
Query: 2 RFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNK 61
R + PL+ + ERE AV++E A D R+ Q+ T H +KF GN
Sbjct: 121 RLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNL 180
Query: 62 KSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQI 121
++L + + G +Q+ + + YY LMK V+ +PL L + F V
Sbjct: 181 ETL--SDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESK 238
Query: 122 KPQFTVEGTIWKACKLFRLEAVKDV--HILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGR 179
KP+ TV + A K + V + +L + + + ++ K+++ + +L+G+
Sbjct: 239 KPEITVP-VVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSP 297
Query: 180 GSLHSFLKGRGWATSISAGV-----GDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFV 234
G+L +L+ +G ISA G+ G + +S LTD GL ++ +
Sbjct: 298 GTLSDWLQKQGLVEGISANSDPIVNGNSG--------VLAISASLTDKGLANRDQVVAAI 349
Query: 235 YQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEY 294
+ Y+ LLR+ K F EL ++ +++FR+ DY LA ++ P EH +
Sbjct: 350 FSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVN 409
Query: 295 MYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELW 354
+ + +D + +K L P+N RI +S ++ ++ + Y + IS W
Sbjct: 410 IADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYF---VDAPYQVDKISAQTFADW 466
Query: 355 RNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFK 414
+ D++L LP N +IP DFS+ ++ D P I+DE +R Y F
Sbjct: 467 QK-KAADIALSLPELNPYIPDDFSLIKSEKKYD-----HPELIVDESNLRVVYAPSRYFA 520
Query: 415 L-PRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKL 473
P+A+ + D+ +N ++ L +L L+++ QASV + S + ++ L
Sbjct: 521 SEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGL 579
Query: 474 ELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQ 533
+ G+ +LP L +L S+ ++D+ + K + + + + + Q
Sbjct: 580 MVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQ 639
Query: 534 VLCQ-SFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKS 592
+L Q ++ DE+ IL ++L +++A+ L+S E + GN+++ +A ++ +
Sbjct: 640 MLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQK 699
Query: 593 IFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLK 652
++ C + + SV + NS + G +
Sbjct: 700 ---------QLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSS 750
Query: 653 ALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERID 712
A L +I++ F+NQLRT+EQLGY V P R +G F +QS+ P +L ER
Sbjct: 751 AYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYK 810
Query: 713 NFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQK 771
F F + ++ ++L+ +L E+++ FD K
Sbjct: 811 AFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDK 869
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 116 RKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCL-HQEYLKKSEDYLAHLL 174
R P + P F VE ++ + L L P + +QE + LAHLL
Sbjct: 214 RAYPPLTPAFGVEERPYEKAR-----------ALYLVALFPGVAYQEEARFPGQVLAHLL 262
Query: 175 GHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMS 216
G EG G LH L +G A S G+ E R+ + +V +
Sbjct: 263 GEEGSGRLHFALVDKGLAEVASFGL--EEADRAGTFHAYVQA 302
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 166 SEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIA 210
+E Y +LG +GRG++ S +G WA G+ GMH ++++
Sbjct: 86 AELYAVKVLGADGRGAISSIAQGLEWA-------GNNGMHVANLS 123
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 263 RFAEEQPQDDYAAELAGNLLIYPAEHVIYG 292
R+ E P DD+AAE+ L I P +V Y
Sbjct: 205 RWLEANPDDDFAAEVRAELNIAPKRYVTYA 234
>pdb|3B5K|A Chain A, Crystal Structure Of Murine Interleukin-5
pdb|3B5K|B Chain B, Crystal Structure Of Murine Interleukin-5
Length = 113
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 598 PLPIEMRHQECVICLPSGANLVRNVSVKNKC-----ETNSVIELYFQIEQEK-GMELTRL 651
P+P HQ C+ + G ++++N +V+ + S+I+ Y ++EK G E R
Sbjct: 32 PVPTHKNHQLCIGEIFQGLDILKNQTVRGGTVERLFQNLSLIKKYIDRQKEKCGEERRRT 91
Query: 652 KALIDLFDEIL 662
+ +D E L
Sbjct: 92 RQFLDYLQEFL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,444,985
Number of Sequences: 62578
Number of extensions: 1039636
Number of successful extensions: 2551
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2421
Number of HSP's gapped (non-prelim): 19
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)