Query 003164
Match_columns 843
No_of_seqs 180 out of 2335
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 1.2E-85 4.1E-90 805.5 85.8 813 1-842 120-937 (939)
2 3cww_A Insulysin, insulin-degr 100.0 3.3E-84 1.1E-88 796.4 90.1 825 1-843 134-980 (990)
3 2fge_A Atprep2;, zinc metallop 100.0 1.4E-60 4.8E-65 585.9 44.2 755 1-816 134-981 (995)
4 3s5m_A Falcilysin; M16 metallo 100.0 3.6E-56 1.2E-60 534.9 34.6 783 1-824 186-1186(1193)
5 3gwb_A Peptidase M16 inactive 100.0 8.7E-36 3E-40 332.3 37.2 394 393-811 13-422 (434)
6 3eoq_A Putative zinc protease; 100.0 2.8E-35 9.7E-40 324.5 38.1 389 396-811 4-405 (406)
7 3hdi_A Processing protease; CA 100.0 2.6E-35 9E-40 326.7 36.0 395 395-816 3-410 (421)
8 3amj_B Zinc peptidase inactive 100.0 2.5E-35 8.6E-40 327.3 33.1 400 394-817 4-421 (424)
9 3cx5_A Cytochrome B-C1 complex 100.0 5.5E-34 1.9E-38 317.4 36.6 390 395-812 2-415 (431)
10 1pp9_B Ubiquinol-cytochrome C 100.0 9.6E-34 3.3E-38 316.2 37.9 391 394-814 24-434 (439)
11 3ami_A Zinc peptidase; alpha/b 100.0 1.3E-33 4.5E-38 315.2 37.7 399 395-815 8-427 (445)
12 1hr6_B Beta-MPP, mitochondrial 100.0 3.3E-33 1.1E-37 312.1 38.9 400 393-813 6-431 (443)
13 1hr6_A Alpha-MPP, mitochondria 100.0 2.8E-33 9.7E-38 314.8 38.4 402 394-814 6-441 (475)
14 3d3y_A Uncharacterized protein 100.0 1E-32 3.5E-37 306.7 37.6 382 397-811 6-423 (425)
15 1pp9_A Ubiquinol-cytochrome C 100.0 1.6E-32 5.4E-37 306.5 37.2 398 394-814 14-432 (446)
16 3eoq_A Putative zinc protease; 100.0 2.2E-33 7.6E-38 309.3 20.7 302 1-324 100-404 (406)
17 3ami_A Zinc peptidase; alpha/b 100.0 8.3E-33 2.8E-37 308.7 24.2 311 1-325 105-423 (445)
18 3go9_A Insulinase family prote 100.0 9.9E-32 3.4E-36 301.8 28.6 399 394-818 26-455 (492)
19 3hdi_A Processing protease; CA 100.0 1.6E-30 5.6E-35 288.1 22.3 302 1-324 100-404 (421)
20 1pp9_A Ubiquinol-cytochrome C 100.0 4.3E-30 1.5E-34 286.8 22.0 306 1-324 111-428 (446)
21 3amj_B Zinc peptidase inactive 100.0 8.3E-29 2.8E-33 274.8 23.5 304 1-325 108-415 (424)
22 1hr6_B Beta-MPP, mitochondrial 100.0 8.6E-29 2.9E-33 276.3 22.7 309 1-324 105-428 (443)
23 3gwb_A Peptidase M16 inactive 100.0 1.9E-28 6.4E-33 272.9 23.9 306 1-325 113-422 (434)
24 3d3y_A Uncharacterized protein 100.0 1.2E-27 3.9E-32 265.8 21.4 301 1-320 111-419 (425)
25 1hr6_A Alpha-MPP, mitochondria 100.0 9.4E-28 3.2E-32 269.8 20.2 303 1-324 103-437 (475)
26 3cx5_A Cytochrome B-C1 complex 99.9 1.5E-27 5.3E-32 265.3 19.4 305 1-324 92-413 (431)
27 1q2l_A Protease III; hydrolase 99.9 1.2E-25 4.1E-30 274.7 31.3 396 395-813 22-442 (939)
28 1pp9_B Ubiquinol-cytochrome C 99.9 3.7E-26 1.3E-30 254.8 22.0 299 1-324 121-430 (439)
29 3s5m_A Falcilysin; M16 metallo 99.9 3.5E-23 1.2E-27 249.4 32.3 402 395-812 88-590 (1193)
30 3go9_A Insulinase family prote 99.9 7.7E-25 2.6E-29 245.7 15.9 297 1-323 133-447 (492)
31 3cww_A Insulysin, insulin-degr 99.9 3.1E-23 1.1E-27 254.7 29.3 394 395-810 36-455 (990)
32 2fge_A Atprep2;, zinc metallop 99.9 4.6E-23 1.6E-27 252.9 29.0 380 397-794 41-472 (995)
33 3cx5_B Cytochrome B-C1 complex 99.9 1.1E-22 3.7E-27 219.3 17.2 339 404-814 2-347 (352)
34 3cx5_B Cytochrome B-C1 complex 99.8 6.5E-19 2.2E-23 189.7 13.6 220 1-262 87-309 (352)
35 3ih6_A Putative zinc protease; 99.6 1.2E-15 4E-20 149.0 14.7 166 630-810 23-194 (197)
36 3ih6_A Putative zinc protease; 99.4 7.7E-13 2.6E-17 128.9 8.9 172 144-324 22-194 (197)
37 1g6u_A Domain swapped dimer; d 36.3 65 0.0022 20.3 4.2 25 232-256 3-27 (48)
38 4aik_A Transcriptional regulat 30.2 1.1E+02 0.0038 26.6 6.8 65 182-258 66-130 (151)
39 3eco_A MEPR; mutlidrug efflux 21.2 2.2E+02 0.0076 23.8 7.0 64 183-258 68-131 (139)
40 3hsr_A HTH-type transcriptiona 20.7 1.2E+02 0.0041 25.7 5.1 63 182-258 70-132 (140)
41 3k0l_A Repressor protein; heli 20.0 2.2E+02 0.0076 24.7 6.9 65 182-258 80-144 (162)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.2e-85 Score=805.48 Aligned_cols=813 Identities=22% Similarity=0.359 Sum_probs=683.2
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
|+|+|++.+|+|+++++++||++|++|++++.++|.+++++.+..+++++|||+++++|++++|.+ .++..++++|++
T Consensus 120 ~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~--~~~~~~~~~l~~ 197 (939)
T 1q2l_A 120 DRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSD--KPGNPVQQALKD 197 (939)
T ss_dssp HHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSC--BTTBCHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhc--CCCchHHHHHHH
Confidence 579999999999999999999999999999999999999998888899999999999999999997 233369999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccc--cceEEEEEccCceEEEEEEecCCc
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKA--CKLFRLEAVKDVHILDLTWTLPCL 158 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~l~l~~~~p~~ 158 (843)
||++||+|+||+|||+||+|+++++++|+++|++|+++..+.+.+..+ ++... +..+.+.+..+...+.+.|++|..
T Consensus 198 f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 276 (939)
T 1q2l_A 198 FHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVP-VVTDAQKGIIIHYVPALPRKVLRVEFRIDNN 276 (939)
T ss_dssp HHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSC-SCCGGGSSEEEEECCSSCCCEEEEEEEEECC
T ss_pred HHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCC-CCCHHHcCEEEEEEeCCCCcEEEEEEEcCCh
Confidence 999999999999999999999999999999999998765443322211 22111 223334455567899999999987
Q ss_pred hhhhhcCcHHHHHHhhcCCCCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHH
Q 003164 159 HQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYI 238 (843)
Q Consensus 159 ~~~~~~~~~~~l~~ll~~~~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l 238 (843)
.+.++..++.+++++||+++.|+|++.|+++||+++++++.... .....+.|.|.+.+++.|.++++++++.+++++
T Consensus 277 ~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~---~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l 353 (939)
T 1q2l_A 277 SAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPI---VNGNSGVLAISASLTDKGLANRDQVVAAIFSYL 353 (939)
T ss_dssp GGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESS---TTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHH
T ss_pred HHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeeccccc---cCCCceEEEEEEEEChhhhhhHHHHHHHHHHHH
Confidence 66556789999999999999999999999999999998874211 123578999999998877679999999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCccceeecCcccccCCHHHHHHHHhccCcCceEE
Q 003164 239 KLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRI 318 (843)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~ 318 (843)
+++++.|++++++++++......|.+....++.+.+..++..+..+++++++.+...+..+++++|++++++|.++++++
T Consensus 354 ~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~ 433 (939)
T 1q2l_A 354 NLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARI 433 (939)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEE
T ss_pred HHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcEE
Confidence 99999999999999999988888876654556778888888877777777776677899999999999998899999999
Q ss_pred EEEeCCCCCCCCCcccceeecccccccCCHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcCCCCCeEEe
Q 003164 319 DVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCII 398 (843)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~lp~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~ 398 (843)
++++|... ....++||+.+|....++++.++.|... .....+.+|..|+++|+++.+.+... ....|..+.
T Consensus 434 ~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~n~~~~~~~~~~~~~~-----~~~~p~~~~ 504 (939)
T 1q2l_A 434 WYISPKEP---HNKTAYFVDAPYQVDKISAQTFADWQKK-AADIALSLPELNPYIPDDFSLIKSEK-----KYDHPELIV 504 (939)
T ss_dssp EEECTTCC---CCEECTTTCCEEEEEECCHHHHHHHHHH-HHTCCCCCCCCCTTCCCCCCCCCCSS-----CCSSCEEEE
T ss_pred EEEcCCCC---CCcccceeCCeeeeeeCCHHHHHHHhcc-CccccccCCCCCcCCCcCcccccCcC-----CCCCCEEEE
Confidence 99988652 2356889999999999998888888652 12335778999999999887754321 234688899
Q ss_pred cCCCeEEEEecCCccCCc-ceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhhhcccEeEEEEecceeEEEE
Q 003164 399 DEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477 (843)
Q Consensus 399 ~~ng~~v~~~~~~~~~~p-~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 477 (843)
++||++||+++++.|+.| ++.|++.+.++.+..++.+.+++.+++.++..++.+..+.+.++|++++++. .+++.+.+
T Consensus 505 l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~ 583 (939)
T 1q2l_A 505 DESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNA 583 (939)
T ss_dssp EETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEE
T ss_pred ECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEE
Confidence 999999999999888775 9999999999998888888999999999999988888888899999999999 99999999
Q ss_pred cccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCc-CChhhHHHHHHHHhhccCCCCHHHHHHHhccCCHHH
Q 003164 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTN-MKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLAD 556 (843)
Q Consensus 478 ~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~-~~p~~~~~~~~~~~l~~~~~~~~~~~~~l~~it~ed 556 (843)
+|++++++.+++++.+.+++|.|++++|+.+|+.+++.+++.. .+|..++...+..+++++.++..+..+.|+++++++
T Consensus 584 ~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~ 663 (939)
T 1q2l_A 584 NGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKE 663 (939)
T ss_dssp EEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHH
T ss_pred EcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999874 478888988888888877777778899999999999
Q ss_pred HHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCCCCCCCeEE-E
Q 003164 557 LMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVI-E 635 (843)
Q Consensus 557 l~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 635 (843)
+++||++++.+.+++++|+||++.++++++++.+++.++.++.+. ........+.+....+... .+. .++.+ .
T Consensus 664 l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~ 737 (939)
T 1q2l_A 664 VLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEW---CRNKDVVVDKKQSVIFEKA--GNS-TDSALAA 737 (939)
T ss_dssp HHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCC---CCCEEECCCSCEEEEEEEC--CSS-SCEEEEE
T ss_pred HHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccc---cccceEEeCCCceEEEecC--CCC-CCceeEE
Confidence 999999999999999999999999999999999999997543211 1111222233322222232 222 34444 6
Q ss_pred EEEeeccccCcccHHHHHHHHHHHHHhChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChhHHHHHHHHHH
Q 003164 636 LYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFI 715 (843)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~ 715 (843)
++++. +..+.+..+++.+|+++++++||++|||++||||+|+++.....+..|+.|+|++..++|+++.++++.|+
T Consensus 738 ~~~~~----~~~~~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~ 813 (939)
T 1q2l_A 738 VFVPT----GYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFF 813 (939)
T ss_dssp EEECS----SCCHHHHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHH
T ss_pred EEEec----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 77777 76778889999999999999999999999999999999998777777777788885579999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHHHHHHHHHhhccC
Q 003164 716 SGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQW 795 (843)
Q Consensus 716 ~~~~~~l~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~ 795 (843)
+++.+.++++|++||+++|+.+++++....+++..+++.+|..+..+.+.+++.+++.+.|++||++||+++|++|+.+
T Consensus 814 ~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~- 892 (939)
T 1q2l_A 814 PTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVE- 892 (939)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcC-
Confidence 9998877889999999999999999999999999999999999998888899889999999999999999999999864
Q ss_pred CCCcceEEEEEecCCCCcccccccccCcccccChHHHhccCcccccC
Q 003164 796 SPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSSEFYQSL 842 (843)
Q Consensus 796 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (843)
+.+.+++++|+|+.....+-... .+...|+|+++||++...||.+
T Consensus 893 -~~~~~l~v~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 937 (939)
T 1q2l_A 893 -PQGMAILSQISGSQNGKAEYVHP-EGWKVWENVSALQQTMPLMSEK 937 (939)
T ss_dssp -CSSEEEEEEECCSSHHHHCCCCC-TTCEECSCHHHHHTTSCEEECC
T ss_pred -CCCCEEEEEEecCCCCccccccc-CCCcEeCCHHHHhhcCcccccc
Confidence 24568899999998654431122 3466799999999999988864
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=3.3e-84 Score=796.39 Aligned_cols=825 Identities=35% Similarity=0.590 Sum_probs=690.5
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhh-hhcCccHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGA-MEKGINLQEQIM 79 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~-~~~~~~~~~~l~ 79 (843)
|+|++++.+|+|+++++++||++|++|++++.++|.+++++.+..+++++|||+++++|++++|.+. ...+..++++|+
T Consensus 134 ~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~ 213 (990)
T 3cww_A 134 DRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELL 213 (990)
T ss_dssp HHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999983 223333999999
Q ss_pred HHHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCccccccc--ccceEEEEEccCceEEEEEEecCC
Q 003164 80 KLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWK--ACKLFRLEAVKDVHILDLTWTLPC 157 (843)
Q Consensus 80 ~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~l~l~~~~p~ 157 (843)
+||++||+|+||+|+|+||+|+++++++|+++|+.|+++..+.+.+.. .|+.. .+..+.+.+..+...+.+.|++|.
T Consensus 214 ~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (990)
T 3cww_A 214 KFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPE-HPFQEEHLKQLYKIVPIKDIRNLYVTFPIPD 292 (990)
T ss_dssp HHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCS-CSSCGGGSSEEEEECCSSSCCEEEEEEEECC
T ss_pred HHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCC-CCCChHHcCeEEEEEECCCCcEEEEEEEcCC
Confidence 999999999999999999999999999999999999876544333321 13211 123344445456789999999998
Q ss_pred chhhhhcCcHHHHHHhhcCCCCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHH
Q 003164 158 LHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237 (843)
Q Consensus 158 ~~~~~~~~~~~~l~~ll~~~~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~ 237 (843)
....++..++.+++++|++++.++|++.|+++||+++++++.... ....+.|.|.+.+++.|.++++++++.++++
T Consensus 293 ~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~----~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~ 368 (990)
T 3cww_A 293 LQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAG----ARGFMFFIINVDLTEEGLLHVEDIILHMFQY 368 (990)
T ss_dssp CGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEE----ETTEEEEEEEEECCHHHHHTHHHHHHHHHHH
T ss_pred hhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccC----CCCccEEEEEEEEChHHhhhHHHHHHHHHHH
Confidence 765556689999999999878889999999999999998875421 1346889999999887767999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCccceeecCcccccCCHHHHHHHHhccCcCceE
Q 003164 238 IKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMR 317 (843)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 317 (843)
++++++.|++++++++++......|.+....++.+.+..++..+..+++++++.....+..+++++|+++++++.+++++
T Consensus 369 l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~ 448 (990)
T 3cww_A 369 IQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVR 448 (990)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCE
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHHHHHHHhcCHhHEE
Confidence 99999999999999998887777776655556778888888888778888888777889999999999999889999998
Q ss_pred EEEEeCCCCCCCCCcccceeecccccccCCHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCcCCCCCeEE
Q 003164 318 IDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVTSPTCI 397 (843)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~lp~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~ 397 (843)
+++++|.+.. .....++||+.+|....++++.++.|.+.. ..+.+.+|..++++|.++.+.+.... ....|..+
T Consensus 449 ~~~~~p~~~~-~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~ip~~~~~~~~~~~----~~~~p~~~ 522 (990)
T 3cww_A 449 VAIVSKSFEG-KTDRTEEWYGTQYKQEAIPDAVIAKWQNAA-LNGKFKLPTKNEFIPTNFEILPLEAA----ATPYPALI 522 (990)
T ss_dssp EEEECGGGTT-CCCEECTTTCCEEEEEECCHHHHHHHHTCC-CCTTCCCCCCCTTCCCCCCCCCCCTT----CCSSCEEE
T ss_pred EEEEcCCCCC-CcCcccceeCceeeeecCCHHHHHHhhcCC-CCccccCCCCCCCCCcccccccCCCC----CCCCCeee
Confidence 8888887632 344678889999999999999999997743 22347789999999998876543211 23468888
Q ss_pred ecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhhhcccEeEEEEecceeEEEE
Q 003164 398 IDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKV 477 (843)
Q Consensus 398 ~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 477 (843)
.++||++||++++++|++|++.+++.+.++.+..++...+++.+++.++...++...+.+.++|++++++...+++.+++
T Consensus 523 ~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 602 (990)
T 3cww_A 523 KDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSV 602 (990)
T ss_dssp EECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEE
T ss_pred ecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEE
Confidence 99999999999999888999999999999888888888999999999999888888888889999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcC-ChhhHHHHHHHHhhccCCCCHHHHHHHhccCCHHH
Q 003164 478 YGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLAD 556 (843)
Q Consensus 478 ~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~-~p~~~~~~~~~~~l~~~~~~~~~~~~~l~~it~ed 556 (843)
+|++++++.+++++.+.+++|.|++++|+.+|+.++..+++... +|..++...+..++++..|...+..+.|++++.++
T Consensus 603 ~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~ 682 (990)
T 3cww_A 603 KGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPR 682 (990)
T ss_dssp EEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCCHHHHHHHHTTCCHHH
T ss_pred EeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999887 89999999999888887888777899999999999
Q ss_pred HHHHHHHHHhhhceeeeeecCCCHHHHHHH---HHHHHhhcCCC-CCCccccccceeeecCCCCeEEEEeccCCCCCCCe
Q 003164 557 LMAFIPELRSQLYIEGLCHGNLSQEEAIHI---SNIFKSIFSVQ-PLPIEMRHQECVICLPSGANLVRNVSVKNKCETNS 632 (843)
Q Consensus 557 l~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (843)
+.+|+++++++.+++++|+||++.+++.++ +.++++.++.. +.+....+......++.+...++.. .++...++
T Consensus 683 l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 760 (990)
T 3cww_A 683 LKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQ--RNEVHNNS 760 (990)
T ss_dssp HHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEE--ECSSCSSE
T ss_pred HHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEe--cCCCCCCc
Confidence 999999999999999999999999999888 55666666532 1111000011222334443332222 23456788
Q ss_pred EEEEEEeeccccCcccHHHHHHHHHHHHHhChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChhHHHHHHH
Q 003164 633 VIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERID 712 (843)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~ 712 (843)
++.++++. +..+.++.+++.||+.+|+++||++|||++||||+|++++....+..++.++++++ ++|+++.++|+
T Consensus 761 ~v~~~~~~----~~~~~~~~~~l~ll~~il~~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~-~dp~~~~~~i~ 835 (990)
T 3cww_A 761 GIEIYYQT----DMQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSE-KPPHYLESRVE 835 (990)
T ss_dssp EEEEEEEE----EECCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEES-SCHHHHHHHHH
T ss_pred EEEEEEeC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCC-CCHHHHHHHHH
Confidence 88888887 77889999999999999999999999999999999999998888888888889988 69999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHHHHHHHHHhh
Q 003164 713 NFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYL 792 (843)
Q Consensus 713 ~~~~~~~~~l~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~a~~~l 792 (843)
.|++++..+++++|++||+++|.++++++....+++..+...+|..+..+.+.++..+++.+.|+++|++||+++|++|+
T Consensus 836 ~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l 915 (990)
T 3cww_A 836 AFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEML 915 (990)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99999988777899999999999999999999999999999999999998888888889999999999999999999999
Q ss_pred ccCCCCcceEEEEEecCCCCccccc--------------ccccCcccccChHHHhccCcccccCC
Q 003164 793 QQWSPKCRRLAVRVWGCNTNIKESE--------------KHSKSALVIKDLTAFKLSSEFYQSLC 843 (843)
Q Consensus 793 ~~~~~~~~~~~~~v~g~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (843)
.+++..+++++++|+|+.+.+.... ..-.+...|+|+.+||++...||..|
T Consensus 916 ~~~~~~~~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (990)
T 3cww_A 916 AVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQAPALPQPEVIQNMTAFKRGLPLFPLVK 980 (990)
T ss_dssp STTCTTCEEEEEEEECTTC----------------CCCCCCCCCCEECSCHHHHHHTSCBCCCCC
T ss_pred hccCCCCCEEEEEEECCCCcccccccccccchhhhhcccccCCCCeEecCHHHHhhcCcccccCC
Confidence 8643445799999999988775100 01124567999999999999998765
No 3
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.4e-60 Score=585.86 Aligned_cols=755 Identities=11% Similarity=0.036 Sum_probs=527.1
Q ss_pred ChhhhcchhccC--CcchHHHH---------------HHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhh
Q 003164 1 MRFSQFFISPLM--KVEAMERE---------------VLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKS 63 (843)
Q Consensus 1 ~~~~~~~~~p~~--~~~~i~~E---------------r~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~ 63 (843)
++++|++.+|+| +++.+++| |+||++||+++.++|.+++++.+...+|++|||+++++|++++
T Consensus 134 ~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~ 213 (995)
T 2fge_A 134 DVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKD 213 (995)
T ss_dssp HHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCCTTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCCCChHh
Confidence 478999999999 99999999 9999999999999999999999888899999999999999999
Q ss_pred hhhhhhcCccHHHHHHHHHHhccCccccEEEEecCCCHHHHHHHHHHhccccc--CCCCCCCCCCcccccccccc----e
Q 003164 64 LIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVR--KGPQIKPQFTVEGTIWKACK----L 137 (843)
Q Consensus 64 l~~~~~~~~~~~~~l~~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~--~~~~~~~~~~~~~p~~~~~~----~ 137 (843)
|.+ +++++|++||++||+|+||+|+|+||+|+++++++|+++|++|+ ++..+.+... ..|+. ... .
T Consensus 214 i~~------~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 285 (995)
T 2fge_A 214 IPN------LTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKF-QKLFS-EPVRLVEK 285 (995)
T ss_dssp GGG------CCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCC-CCCCS-SCEEEEEE
T ss_pred hhh------cCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCC-CCCCC-CCceEEEe
Confidence 999 89999999999999999999999999999999999999999998 4321111100 11221 111 1
Q ss_pred EEE---EEccCceEEEEEEecCCch-hhhhcCcHHHHHHhhcCCCCCcHHHHHhhcCcccccccc-cCCCCCccCCceeE
Q 003164 138 FRL---EAVKDVHILDLTWTLPCLH-QEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAG-VGDEGMHRSSIAYI 212 (843)
Q Consensus 138 ~~~---~~~~~~~~l~l~~~~p~~~-~~~~~~~~~~l~~ll~~~~~~sL~~~L~~~~l~~~~~~~-~~~~~~~~~~~~~~ 212 (843)
+.+ .+...+..+.+.|+.|... +..+..++.+++++|+++..++|+..|+++||+++++++ ... ....+.
T Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~-----~~~~~~ 360 (995)
T 2fge_A 286 YPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSD-----ELLQPQ 360 (995)
T ss_dssp EECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEEC-----SSSSCE
T ss_pred cccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCcceeeccccc-----cccCeE
Confidence 111 2223578999999998765 334557899999999986666799999999999988764 321 123567
Q ss_pred EEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhcccccCCC-CChH--HHHHHHHHhCCC-CCccc
Q 003164 213 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEE-QPQD--DYAAELAGNLLI-YPAEH 288 (843)
Q Consensus 213 f~i~~~l~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~l~~~l~~-~~~~~ 288 (843)
|.|.+..++. ++++++++.++++|+++++.|+++++++++++.....+..... ..+. .++..++..+.. .++..
T Consensus 361 f~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (995)
T 2fge_A 361 FGIGLKGVSE--ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFE 438 (995)
T ss_dssp EEEEEEEECG--GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSG
T ss_pred EEEEEEeCCH--HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHH
Confidence 8876544332 5899999999999999999999999999988876665543322 1223 345555554433 45555
Q ss_pred eeecCcccccCCH----H----HHHHHH-hccCcC-ceEEEEEeCCCCCCC-CCcccceeecccccccCCHHHH------
Q 003164 289 VIYGEYMYEVWDE----E----MIKHLL-GFFMPE-NMRIDVVSKSFAKSQ-DFHYEPWFGSRYTEEDISPSLM------ 351 (843)
Q Consensus 289 ~~~~~~~~~~~~~----~----~i~~~l-~~l~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~i~~~~~------ 351 (843)
.......+..+++ + +|++++ ++|.++ +..++++.|+..... ....+++....+. ..++++.+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~-~~~~~~~~~~~~~~ 517 (995)
T 2fge_A 439 PLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVK-AAMTEEDLAELARA 517 (995)
T ss_dssp GGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 5544455666666 7 799998 567654 556666677542100 0011221111111 12333222
Q ss_pred ----HhhcCCCCCCCCCCCCCCCCCCCCCc--ccccccCCCCCcCCCCCeEEecCCCeEEEEecCCccCCcceeEEEEEe
Q 003164 352 ----ELWRNPPEIDVSLQLPSQNEFIPTDF--SIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRIN 425 (843)
Q Consensus 352 ----~~~~~~~~~~~~~~lp~~~~~i~~~~--~~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~ 425 (843)
+.|+... .+. ....++|... .+... ....|......||++||++++. ..|.+.+.+.+.
T Consensus 518 ~~~l~~~~~~~--~~~----~~~~~~p~~~~~~i~~~-------~~~~~~~~~~~nG~~v~~~~~~--~~~~v~~~~~~~ 582 (995)
T 2fge_A 518 TEELKLKQETP--DPP----EALRCVPSLNLGDIPKE-------PTYVPTEVGDINGVKVLRHDLF--TNDIIYTEVVFD 582 (995)
T ss_dssp HHHHHHHHTSC--CCH----HHHTTSCCCCGGGSCSS-------CCCCCCEEEESSSSEEEEEECC--CSSEEEEEEEEE
T ss_pred HHHHHHHhcCC--CCh----HHHHhcCCCCHhhcCcc-------CCCCCceeeecCCceEEEEecC--CCCeEEEEEEee
Confidence 2343311 000 0011233221 11110 1124555666899999999874 356555555554
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHH-HHHHHh-------HHhhhcccEe-EE--EEec-----ceeEEEEcccCCCHHHHHH
Q 003164 426 LKGGYDNVKNCILTELFIHLLKD-ELNEII-------YQASVAKLET-SV--SIFS-----DKLELKVYGFNDKLPVLLS 489 (843)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~-------~~~~~~g~~~-~~--~~~~-----~~~~~~~~g~s~~~~~~l~ 489 (843)
. +..+.+..+++.+++.++.. +...+. .....+|+++ ++ +... .++.+++++++++++.+++
T Consensus 583 ~--~~~~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ 660 (995)
T 2fge_A 583 I--GSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFN 660 (995)
T ss_dssp C--TTSCTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred C--CCCCHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHHHHH
Confidence 4 44455667788888888875 322111 1123445566 33 4433 7899999999999999999
Q ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHHHHhcCcC-ChhhHHHHHHHHhhccCC-CC-------H----HHHH----HHhcc
Q 003164 490 KILAIAKSFLPSDD-RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSF-YD-------V----DEKL----SILHG 551 (843)
Q Consensus 490 ll~~~l~~p~~~~~-~~~~~k~~~~~~l~~~~~-~p~~~~~~~~~~~l~~~~-~~-------~----~~~~----~~l~~ 551 (843)
++.+++++|.|+++ +|+++++.++.++++... .+..++...+..++.+.. +. . .+.. +.++.
T Consensus 661 ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~ 740 (995)
T 2fge_A 661 LMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEG 740 (995)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHH
Confidence 99999999999998 999999999999998764 677777777766654321 11 0 1111 55788
Q ss_pred CCHHHHHHHHHHHHhhhceeeeeecCCCH-HHHHHHHHHHHhhc-CCCCCCccccccceeeecCCCCeEEEEeccCCCCC
Q 003164 552 LSLADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIF-SVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCE 629 (843)
Q Consensus 552 it~edl~~~~~~~~~~~~~~~~i~Gdi~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (843)
+ .++|++||+++|.+.+++++|+||++. +++.++++++++.+ |....+.. ....+.+.... ... .+..
T Consensus 741 i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~------~~~~~~~~~~~-~~~--~~~~ 810 (995)
T 2fge_A 741 I-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV------TWDGRLPLRNE-AIV--IPTQ 810 (995)
T ss_dssp H-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC------CCCCCCCCCCE-EEE--CSCS
T ss_pred H-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCC------cccccCCccce-EEE--ecCc
Confidence 9 999999999999999999999999995 89999999999988 75432210 11111111111 111 1222
Q ss_pred CCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC-hhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChhHHH
Q 003164 630 TNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQ 708 (843)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~ 708 (843)
.+.. ...+.. ..+++++.+++.||+.+|+ ++||.+||+ +|++|++++++.. .|..+ .|+.. ++| ++.
T Consensus 811 v~~~-~~~~~~----~~~~~~d~~al~vl~~iLg~~~L~~~iRe-~g~aYg~~s~~~~-~G~~~-~~~s~---~dp-~~~ 878 (995)
T 2fge_A 811 VNYV-GKAGNI----YSTGYELDGSAYVISKHISNTWLWDRVRV-SGGAYGGFCDFDS-HSGVF-SYLSY---RDP-NLL 878 (995)
T ss_dssp SBEE-EEEEEG----GGGTCCCCTHHHHHHHHHHHTHHHHHTTT-TTCCSEEEEEEET-TTTEE-EEEEE---SBS-CSH
T ss_pred eEEE-EEecCC----CCCCCcccHHHHHHHHHHCCCccHHHhhh-cCCCcccceEeCC-CccEE-EEEEE---cCC-CHH
Confidence 2222 222222 3456778888999999986 578999999 8999999999875 34333 03322 245 456
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHHHHHH
Q 003164 709 ERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISW 787 (843)
Q Consensus 709 ~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~ 787 (843)
++++.|.+.+..+. .++|++||+++|.++++++. ...++.+.+...|..++.+ .++++.+++.+.|.+||++||+++
T Consensus 879 ~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~-~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~vT~edv~~~ 956 (995)
T 2fge_A 879 KTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVD-SYQLPDAKGYSSLLRHLLG-VTDEERQRKREEILTTSLKDFKDF 956 (995)
T ss_dssp HHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777666443 48999999999999999995 4678888888888877765 467788889999999999999999
Q ss_pred HHHhhccCCCCcceEEEEEecCCCCcccc
Q 003164 788 YKTYLQQWSPKCRRLAVRVWGCNTNIKES 816 (843)
Q Consensus 788 a~~~l~~~~~~~~~~~~~v~g~~~~~~~~ 816 (843)
|++|+.+. ++.+++|+|+.+.|++.
T Consensus 957 a~~~~~~~----~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 957 AQAIDVVR----DKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHH----HHCEEEEEECHHHHHHH
T ss_pred HHHHHhhh----ccCCEEEECCHHHHHhh
Confidence 99999761 26889999999999988
No 4
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=3.6e-56 Score=534.86 Aligned_cols=783 Identities=13% Similarity=0.084 Sum_probs=501.8
Q ss_pred ChhhhcchhccCCcch--HHHH-----------------------------HHhhHhHhhhhcCChHHHHHHHHHhhCCC
Q 003164 1 MRFSQFFISPLMKVEA--MERE-----------------------------VLAVDSEFNQALQNDACRLQQLQCHTSQL 49 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~--i~~E-----------------------------r~vV~~E~~~~~~~~~~~~~~~~~~~~~~ 49 (843)
++++|++.+|.|++++ |.+| |+||++|+++..++|..++++.+...+|+
T Consensus 186 ~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~ 265 (1193)
T 3s5m_A 186 GVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFP 265 (1193)
T ss_dssp HHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHhCC
Confidence 4789999999999988 7777 68999999999999999999988888899
Q ss_pred CCCCCccccCcHhhhhhhhhcCccHHHHHHHHHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCC---CCCC
Q 003164 50 GHAFNKFFWGNKKSLIGAMEKGINLQEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIK---PQFT 126 (843)
Q Consensus 50 ~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~---~~~~ 126 (843)
+|||+++++|++++|.+ +++++|++||++||+|+||+|+|+||+|++++.++|+++|++|+.+..+. +..+
T Consensus 266 ~hpY~~~~~G~~e~I~~------lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~ 339 (1193)
T 3s5m_A 266 DNVHSNNSGGDPKEITN------LTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVE 339 (1193)
T ss_dssp TSGGGSCTTCCHHHHTT------CCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCC
T ss_pred CCCCCCCCCCCHHHHhh------CCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCcccccccC
Confidence 99999999999999999 89999999999999999999999999999999999999999998654321 1111
Q ss_pred cccccccccceEEE-EE---ccCceEEEEEEecCCc----hh-----------------------------hhhcCcHHH
Q 003164 127 VEGTIWKACKLFRL-EA---VKDVHILDLTWTLPCL----HQ-----------------------------EYLKKSEDY 169 (843)
Q Consensus 127 ~~~p~~~~~~~~~~-~~---~~~~~~l~l~~~~p~~----~~-----------------------------~~~~~~~~~ 169 (843)
. .|.....+.+.+ .+ ...+..+.+.|++|.. .+ ..+..++.+
T Consensus 340 ~-~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~v 418 (1193)
T 3s5m_A 340 Y-QTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLI 418 (1193)
T ss_dssp C-CBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHHH
T ss_pred C-CCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHHHH
Confidence 1 122222233332 22 2356789999999852 11 235578999
Q ss_pred HHHhhcCCCCCcHHHHHhhcCcccccc-cccCCCCCccCCceeEEEEEEEcCHhh------HHhH-HHHHHHHHHHHHHH
Q 003164 170 LAHLLGHEGRGSLHSFLKGRGWATSIS-AGVGDEGMHRSSIAYIFVMSIHLTDSG------LEKI-FDIIGFVYQYIKLL 241 (843)
Q Consensus 170 l~~ll~~~~~~sL~~~L~~~~l~~~~~-~~~~~~~~~~~~~~~~f~i~~~l~~~~------~~~~-~~~~~~l~~~l~~l 241 (843)
++++|+++..|+|+..|+++||+++++ ++... ....+.|.|.+...+.+ .++. +++++.|.++|+++
T Consensus 419 L~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~-----~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l 493 (1193)
T 3s5m_A 419 INNLLIHTPESVLYKALTDCGLGNNVIDRGLND-----SLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKV 493 (1193)
T ss_dssp HHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEEC-----SSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHhcCCeeeeccccccc-----ccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHH
Confidence 999999887788999999999999987 44432 23456788877544321 1246 69999999999999
Q ss_pred HhcCCchhHHHHHHHhhhcccccCCCCChH--HHHHHHHHhCC-CCCccceeecCcccccCC------HHHHHHHH-hcc
Q 003164 242 RQVSPQKWIFKELQDIGNMEFRFAEEQPQD--DYAAELAGNLL-IYPAEHVIYGEYMYEVWD------EEMIKHLL-GFF 311 (843)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~------~~~i~~~l-~~l 311 (843)
++.||++++++.+++..+..++.....++. .++..++..+. ..+|...+.....+..+. +..+++++ ++|
T Consensus 494 ~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yl 573 (1193)
T 3s5m_A 494 VKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHF 573 (1193)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Confidence 999999999999888777666543222233 33334444333 356766665544444433 34788888 677
Q ss_pred CcC-ceEEEEEeCCCC--CCCCCcccceeecccccccCCHHH----------HHhhcCCCCCCCCC-CCC--------CC
Q 003164 312 MPE-NMRIDVVSKSFA--KSQDFHYEPWFGSRYTEEDISPSL----------MELWRNPPEIDVSL-QLP--------SQ 369 (843)
Q Consensus 312 ~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~y~~~~i~~~~----------~~~~~~~~~~~~~~-~lp--------~~ 369 (843)
..+ +..+++..|+.. +......... ..-....+++++ +++|+...+.+..+ .+| ..
T Consensus 574 l~n~~~~~~~~~P~~~~~~~~~~~e~~~--L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~ 651 (1193)
T 3s5m_A 574 INNAHRSVILLEGDENYAQEQENLEKQE--LKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKK 651 (1193)
T ss_dssp TTCCCEEEEEEEEESSHHHHHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSS
T ss_pred ccCCceEEEEEEcCCCHHHHHHHHHHHH--HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCC
Confidence 433 323444455431 1000000000 000011233322 23454422211111 122 22
Q ss_pred CCCCCCCc---ccccc----------------------------cCCCC---C---cCCCCCeE-----EecCCCeEEEE
Q 003164 370 NEFIPTDF---SIRAN----------------------------DISND---L---VTVTSPTC-----IIDEPLIRFWY 407 (843)
Q Consensus 370 ~~~i~~~~---~~~~~----------------------------~~~~~---~---~~~~~p~~-----~~~~ng~~v~~ 407 (843)
.+.+|... ..... ..... . .....+.. ....+|+++++
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 731 (1193)
T 3s5m_A 652 TLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILV 731 (1193)
T ss_dssp CCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEE
T ss_pred cccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCeEEEE
Confidence 12222110 00000 00000 0 00000000 01137999999
Q ss_pred ecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-H-----H--HhHHhhhcccEeEEEEe----------
Q 003164 408 KLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL-N-----E--IIYQASVAKLETSVSIF---------- 469 (843)
Q Consensus 408 ~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~-----~--~~~~~~~~g~~~~~~~~---------- 469 (843)
++..+ .+.+|+++.++.+..+.+..+++.|++.+++... . + .......+|+++++...
T Consensus 732 ~~~~T----NGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~ 807 (1193)
T 3s5m_A 732 YEMPT----TGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTD 807 (1193)
T ss_dssp EECCC----TTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCC
T ss_pred EECCC----CCeEEEEEEEECCCCCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccc
Confidence 98775 2456666655555667888999999999986411 1 1 12233456777777542
Q ss_pred ----cceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcCcC-ChhhHHHHHHHHhhccCC-C--
Q 003164 470 ----SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD-RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSF-Y-- 540 (843)
Q Consensus 470 ----~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~-~~~~~k~~~~~~l~~~~~-~p~~~~~~~~~~~l~~~~-~-- 540 (843)
...+.+++++++++++.+++++.++|++|+|++. ++..+.++.+..+++... ++...|+..+...+.+.. +
T Consensus 808 ~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e 887 (1193)
T 3s5m_A 808 KYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHN 887 (1193)
T ss_dssp TTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHH
T ss_pred cccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhh
Confidence 2347899999999999999999999999999875 588888888777776544 455566665544443211 1
Q ss_pred ---C--HHHH--------HHHhccCCHHHHHHHHHHHHhhhceeeeeecCCC-HHHHHHHHHHHHhhcCC----C-C---
Q 003164 541 ---D--VDEK--------LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS-QEEAIHISNIFKSIFSV----Q-P--- 598 (843)
Q Consensus 541 ---~--~~~~--------~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~-~~~~~~~~~~~~~~l~~----~-~--- 598 (843)
+ .... .+.++.+ .++|+++++++++++++.+.++|+.+ .+++.+.++++++.++. . +
T Consensus 888 ~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 966 (1193)
T 3s5m_A 888 IIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYIN 966 (1193)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSC
T ss_pred hhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccccccccc
Confidence 0 0011 1222334 78999999999999999999999986 46666666666555431 0 0
Q ss_pred -------CCc-cccc---c-ceeeecCCCCeEEEEeccCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC-hh
Q 003164 599 -------LPI-EMRH---Q-ECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EP 665 (843)
Q Consensus 599 -------~~~-~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~ 665 (843)
.+. ..+. . ......+......+.. |...+.+ ...+.. ....+++++++.||+.+|+ ++
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----p~~v~yv-~~~~~~----~~~~~~d~~al~Vl~~iLg~~~ 1037 (1193)
T 3s5m_A 967 DMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVL----PTFVNSV-SMSGIL----FKPGEYLDPSFTVIVAALKNSY 1037 (1193)
T ss_dssp CCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEEC----CCSSBEE-EEEEEC----SCTTCBCCTHHHHHHHHHHHTH
T ss_pred ccccccccccccccccccccccccccccccceeEec----CCcceEE-EEEecC----CCCCCCchHHHHHHHHHHCccH
Confidence 000 0000 0 0000011111111111 3334443 344443 3345566778888888886 69
Q ss_pred HHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHc
Q 003164 666 FFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL---EGLDDESFENYRSGLMAKLL 742 (843)
Q Consensus 666 l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l---~~ite~el~~~k~~l~~~~~ 742 (843)
||.+||||.| +|++++++. ..| .+.|+ ++ ++| +..++++.+.+.+..+. +++|++||+++|.++++++.
T Consensus 1038 L~~eIREkgG-AYg~~s~~~-~~G--~f~~~--sy-rdp-~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d 1109 (1193)
T 3s5m_A 1038 LWDTVRGLNG-AYGVFADIE-YDG--SVVFL--SA-RDP-NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID 1109 (1193)
T ss_dssp HHHHHTTTTC-CSEEEEEEC-TTS--EEEEE--EE-SBS-CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCC-eeEEEEecc-CCC--cEEEE--EE-eCC-CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc
Confidence 9999999865 999999977 333 33343 22 244 35566676666555443 38999999999999999986
Q ss_pred CCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCcccccccccC
Q 003164 743 EKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKHSKS 822 (843)
Q Consensus 743 ~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 822 (843)
.+.++...+..++...+. +++.++.+++++.|.++|++||+++|++|+.+- ...+..++|+|+.+.+.+.... .|
T Consensus 1110 -~p~~p~~~a~~~~~~~~~-Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l--~~~~~~~vvvG~~~~i~~~l~~-~~ 1184 (1193)
T 3s5m_A 1110 -KPRRGIELSKLSFLRLIS-NESEQDRVEFRKRIMNTKKEDFYKFADLLESKV--NEFEKNIVIITTKEKANEYIAN-VD 1184 (1193)
T ss_dssp -CCCCTHHHHHHHHHHHHT-TCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTH--HHHTTEEEEEECHHHHHHHHHH-TC
T ss_pred -ccCChHHHHHHHHHHHHc-CcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--cccCceEEEEcCHHHhhhHHhh-cC
Confidence 566766666665443333 457788899999999999999999999999760 0014789999999888887655 45
Q ss_pred cc
Q 003164 823 AL 824 (843)
Q Consensus 823 ~~ 824 (843)
|.
T Consensus 1185 ~~ 1186 (1193)
T 3s5m_A 1185 GE 1186 (1193)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 5
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=8.7e-36 Score=332.27 Aligned_cols=394 Identities=12% Similarity=0.035 Sum_probs=310.0
Q ss_pred CCeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH---HhHHh--hhcccEeEEE
Q 003164 393 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE---IIYQA--SVAKLETSVS 467 (843)
Q Consensus 393 ~p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~--~~~g~~~~~~ 467 (843)
.++.++++||++||+++++. .|.+.+.+.+..|...+ +...+++.++..++..+... ..+.. ...|.+++..
T Consensus 13 ~~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 13 NVQTWSTAEGAKVLFVEARE--LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp CCEEEECTTCCEEEEEECCS--SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEEcCCCeEEEEEECCC--CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 45678999999999999875 47778888887766555 56678899999988654221 11222 2348888888
Q ss_pred EecceeEEEEcccCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CH
Q 003164 468 IFSDKLELKVYGFNDK--LPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DV 542 (843)
Q Consensus 468 ~~~~~~~~~~~g~s~~--~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~ 542 (843)
.+.+++.+.+++++++ ++.+++++.+.+.+|.|++++|+++|+.+++++++...+|...+...+...+++ ++| ..
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 8899999999999998 999999999999999999999999999999999998889999998888887764 344 34
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEe
Q 003164 543 DEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNV 622 (843)
Q Consensus 543 ~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (843)
.+..+.+++++.+++++||+++|.+.+++++|+||++.+++.++++++++.++.++.+. .+. ....+.+.... +
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~--~ 243 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALA--KIE--QPAEPKASIGH--I 243 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCC--CCC--CCCCCCCEEEE--E
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCC--CCC--CCCCCCCceEE--E
Confidence 45678999999999999999999999999999999999999999999999998653322 111 11112222222 2
Q ss_pred ccCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHH-----hChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEE
Q 003164 623 SVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI-----LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCI 697 (843)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----l~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i 697 (843)
. .+. .++.+.++|+. +..+.++.+++.+++.+ ++++||++||+++|++|++++++....+.+.+.+++
T Consensus 244 ~--~~~-~~~~v~~~~~~----~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~ 316 (434)
T 3gwb_A 244 E--FPS-SQTSLMLAQLG----IDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINL 316 (434)
T ss_dssp E--CCS-SEEEEEEEEEC----CBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEE
T ss_pred e--CCC-CceeEEecCcC----CCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEE
Confidence 2 123 56777777776 55555666777777777 788999999999999999999987665556666666
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHH
Q 003164 698 QSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDL 776 (843)
Q Consensus 698 ~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 776 (843)
++ +|+++.++++.+.+++.++. +++|++||+++|..+++++....++....+..+|.....+ .+++..+++.+.|
T Consensus 317 ~~---~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 392 (434)
T 3gwb_A 317 QT---RAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYN-LPLSYLEDFMRQS 392 (434)
T ss_dssp EE---EGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTT-CCTTHHHHHHHHH
T ss_pred ec---chhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcC-CCccHHHHHHHHH
Confidence 54 56677777777777777665 6899999999999999999998999988888887765543 4677788899999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCC
Q 003164 777 KSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNT 811 (843)
Q Consensus 777 ~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~ 811 (843)
++||++||+++|++||.++ ++.++|+|+..
T Consensus 393 ~~vt~~dv~~~a~~~l~~~-----~~~~~vvg~~~ 422 (434)
T 3gwb_A 393 QELTVEQVKAAMNKHLNVD-----KMVIVSAGPTV 422 (434)
T ss_dssp HHCCHHHHHHHHHHHCCGG-----GCEEEEEECCC
T ss_pred HhCCHHHHHHHHHHhcChh-----hEEEEEEcCcc
Confidence 9999999999999999874 68888888743
No 6
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=2.8e-35 Score=324.48 Aligned_cols=389 Identities=9% Similarity=-0.020 Sum_probs=308.9
Q ss_pred EEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEEEec
Q 003164 396 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSIFS 470 (843)
Q Consensus 396 ~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~~~~ 470 (843)
..++.||++|++.+++. .|.+.+.+.+..|...++....++++++.+++..+.. +........|.+++...+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 4 EAELRNGLRVIAEVVPG--ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEECTTSCEEEEEECTT--CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred eEEcCCCCEEEEEECCC--CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 46789999999999875 5778888888877666777889999999999865322 1111223448888888888
Q ss_pred ceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHHHH
Q 003164 471 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEKLS 547 (843)
Q Consensus 471 ~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~~~ 547 (843)
+.+.+.+++++++++.+++++.+.+ +|.|++++|+++|..++++++...++|...+...+...+++ ++| ...|..+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 99999999999999999999988789999998888887764 333 3456789
Q ss_pred HhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCCC
Q 003164 548 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 627 (843)
Q Consensus 548 ~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (843)
.|++++.+++++||+++|.|+|++++|+||++.+++.++++++++.++..+.+.. . ...+.....+ .+. .+
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~-----~~~~~~~~~~-~~~--~~ 231 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-Y-----PPLTPAFGVE-ERP--YE 231 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-C-----CCCCCCCEEE-EEE--CT
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-C-----CCCCCCCceE-EEe--cC
Confidence 9999999999999999999999999999999999999999999999986543221 0 0111111212 222 22
Q ss_pred CCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh----ChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCC
Q 003164 628 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL----EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYN 703 (843)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l----~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~ 703 (843)
...++.+.+.|+. +..+.++.+++.+++.+| +|+||++||+ +|++|+++++.....+.+.+.+++.. +
T Consensus 232 ~~~q~~~~~~~~~----~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~---~ 303 (406)
T 3eoq_A 232 KARALYLVALFPG----VAYQEEARFPGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQA---D 303 (406)
T ss_dssp TCSSEEEEEEEEC----CCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEE---C
T ss_pred CccceEEEEEecC----CCCCCchHHHHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEe---C
Confidence 3367888888876 555455666777777766 7899999999 99999999998876655556666544 6
Q ss_pred hhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHH
Q 003164 704 PIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKN 782 (843)
Q Consensus 704 ~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~e 782 (843)
|+++.++++.+.+++.++. +++|++||+++|+.+++++....++....+..++...+.++ +.+..+++.+.|++||++
T Consensus 304 ~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~~ 382 (406)
T 3eoq_A 304 PARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTG-RYLSLEEVKARVQRVTSR 382 (406)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHCCHH
T ss_pred cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhCCHH
Confidence 7778888888888887766 68999999999999999998888888888877655544332 346678899999999999
Q ss_pred HHHHHHHHhhccCCCCcceEEEEEecCCC
Q 003164 783 DVISWYKTYLQQWSPKCRRLAVRVWGCNT 811 (843)
Q Consensus 783 di~~~a~~~l~~~~~~~~~~~~~v~g~~~ 811 (843)
||+++|++||.++ .+ ++|+|+.+
T Consensus 383 dv~~~a~~~l~~~-----~~-~~vvGp~~ 405 (406)
T 3eoq_A 383 EVNALLERGFLEK-----GL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHHTTTTTS-----CE-EEEEECCC
T ss_pred HHHHHHHHhcCcc-----cE-EEEECCCC
Confidence 9999999999874 56 89999853
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.6e-35 Score=326.66 Aligned_cols=395 Identities=12% Similarity=0.058 Sum_probs=311.8
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEEEe
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSIF 469 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~~~ 469 (843)
+..+++||++|++.+++. .|.+.+.+.+..+...++....+++.++.+++..+.. +........|.+++...+
T Consensus 3 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 3 NTMTLDNGVRIITEKMST--VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp EEEECTTSCEEEEEECTT--CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEcCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeec
Confidence 356889999999999875 4777888888776666677788999999998764321 111122344778888888
Q ss_pred cceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHHH
Q 003164 470 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEKL 546 (843)
Q Consensus 470 ~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~~ 546 (843)
.+.+.+.+++++++++.+++++.+.+.+|.|++++|+++|..++++++...++|...+...+...+++ +++ +..+..
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 160 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTV 160 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCH
T ss_pred cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 89999999999999999999999999999999999999999999999998889999998888887765 333 345678
Q ss_pred HHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCC
Q 003164 547 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 626 (843)
Q Consensus 547 ~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (843)
+.|++++.+++++||+++|.+.|++++|+||++ +++.++++++++.|+..+.+.. .. .. .......+ ..
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~-~~---~~-~~~~~~~~--~~--- 229 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQ-GE---KP-MFLPNRIV--RK--- 229 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCC-CC---CC-CCCCCEEE--EE---
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCC-CC---CC-CCCCceEE--ec---
Confidence 999999999999999999999999999999999 9999999999999986533211 10 00 11122222 11
Q ss_pred CCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh----ChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCC
Q 003164 627 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL----EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKY 702 (843)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l----~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~ 702 (843)
+...++.+.+.|+. +..+.++.+++.+++.+| +++||++||+++|++|+++++.....+.+.+.+++.+
T Consensus 230 ~~~~q~~v~~~~~~----~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~--- 302 (421)
T 3hdi_A 230 KETEQAHLCLGYPG----LPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT--- 302 (421)
T ss_dssp CCCSEEEEEEEEEC----CCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE---
T ss_pred CCCCceEEEEEEec----CCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe---
Confidence 13467777777776 555566777788888776 4899999999999999999988766555555556543
Q ss_pred ChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCH
Q 003164 703 NPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKK 781 (843)
Q Consensus 703 ~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~ 781 (843)
+|++++++++.+.+++.++. +++|++||+++|..+++++....++....+..++...+.++ ..+..+++.+.|++||+
T Consensus 303 ~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~ 381 (421)
T 3hdi_A 303 GHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLK-KHRSLDEMIEQINAVQK 381 (421)
T ss_dssp EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHcCCH
Confidence 67788888888888888776 58999999999999999999888888877776644333222 23456788999999999
Q ss_pred HHHHHHHHHhhccCCCCcceEEEEEecCCCCcccc
Q 003164 782 NDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 816 (843)
Q Consensus 782 edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~~~ 816 (843)
+||+++|++|+ ++ +++++|+|+.+.|+..
T Consensus 382 ~dv~~~a~~~~-~~-----~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 382 QDVSRLAKILL-SA-----SPSISLINANGELPKA 410 (421)
T ss_dssp HHHHHHHHHHT-TS-----CCEEEEEESSCSCCSC
T ss_pred HHHHHHHHHHc-cc-----CcEEEEECchhcCcch
Confidence 99999999999 74 6899999999888765
No 8
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.5e-35 Score=327.35 Aligned_cols=400 Identities=11% Similarity=0.047 Sum_probs=306.6
Q ss_pred CeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-------HHhHHh--hhcccEe
Q 003164 394 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-------EIIYQA--SVAKLET 464 (843)
Q Consensus 394 p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~--~~~g~~~ 464 (843)
...++++||++||+++++. .|.+.+.+.+..|...++.+..+++.++.+++..+.. ...+.. ...|.++
T Consensus 4 ~~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 4 IEHWTAPSGAQVYYVENRT--LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CEEEECTTSCEEEEEECCS--SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred cEEEECCCCcEEEEEECCC--CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 3467899999999999875 5777777777766655666778899999998865222 112222 2237788
Q ss_pred EEEEecceeEEEEcccCCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCCC
Q 003164 465 SVSIFSDKLELKVYGFNDKL--PVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD 541 (843)
Q Consensus 465 ~~~~~~~~~~~~~~g~s~~~--~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~~ 541 (843)
+...+.+++.+.++++++++ +.+++++.+.+.+|.|++++|+++|+.+++++++...+|...+...+...+++ ++|.
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 88888899999999999998 99999999999999999999999999999999987778999888888887764 4442
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEE
Q 003164 542 VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 621 (843)
Q Consensus 542 ~~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (843)
.....+.|++++.+++++||+++|.+.+++++|+||++.+++.++++++++.++....+.. .+. ...+.+..+ .
T Consensus 162 ~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~-~~~---~~~~~~~~~--~ 235 (424)
T 3amj_B 162 HVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPP-LPD---PAMPRATVE--R 235 (424)
T ss_dssp CCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCC-CCC---CCCCCCEEE--E
T ss_pred CCCCHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCC-CCC---CCCCCCceE--E
Confidence 1115688999999999999999999999999999999999999999999999885432211 111 112222222 2
Q ss_pred eccCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHH-----hChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEE
Q 003164 622 VSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI-----LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFC 696 (843)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-----l~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~ 696 (843)
+.. + ..++.+.++|+. +..+.++.+++.+++.+ ++++||++||+++|++|++++++....+.+.+.++
T Consensus 236 ~~~--~-~~~~~v~~~~~~----~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~ 308 (424)
T 3amj_B 236 IAN--P-ATQAHIAIGMPT----LKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIG 308 (424)
T ss_dssp EEC--S-SSEEEEEEEEEE----EBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEE
T ss_pred eeC--C-CCccEEEeeccC----CCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEE
Confidence 321 2 267777777776 55556677777888777 66799999999999999999988765555556666
Q ss_pred EeCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHH
Q 003164 697 IQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAED 775 (843)
Q Consensus 697 i~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 775 (843)
+++ +|+++.++++.+.+++.++. .++|++||+++|..+++++....+++...+..++..... +.+++..+++.+.
T Consensus 309 ~~~---~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 384 (424)
T 3amj_B 309 FET---RAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYY-GLPLDYLDHYTER 384 (424)
T ss_dssp EEE---ESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHT-TCCTTTTTSHHHH
T ss_pred EEe---CcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHH
Confidence 654 45567777777777777665 589999999999999999988788888777776654443 4467777788999
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCccccc
Q 003164 776 LKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESE 817 (843)
Q Consensus 776 i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~~~~ 817 (843)
|+++|++||+++|++||.++ .+.++++|+..+++-+-
T Consensus 385 i~~vt~~dv~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~ 421 (424)
T 3amj_B 385 VQAVTVEQVREAFARHVKRE-----NLITVVVGGKASLEHHH 421 (424)
T ss_dssp HHTCCHHHHHHHHHHHCCGG-----GCEEEEEECC-------
T ss_pred HHcCCHHHHHHHHHHhcCcc-----ceEEEEECChhhhhhcc
Confidence 99999999999999999874 68899999988887653
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=5.5e-34 Score=317.44 Aligned_cols=390 Identities=13% Similarity=0.054 Sum_probs=306.6
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhhhcccEeEEEEecceeE
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLE 474 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 474 (843)
+.++++||++||+++++. .|.+.+.+.+..|...++.+..++++++.+++..+... +.....|.+++...+.+++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~ 77 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPS--AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQS 77 (431)
T ss_dssp CCEEEESSSEEEEEECTT--CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEE
T ss_pred eEEECCCCCEEEEEECCC--CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEE
Confidence 356789999999999876 47778888887776666677889999999998765443 33456788889998899999
Q ss_pred EEEcccCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCcCCh-hhHHHHHHHHhhcc-CC--CCHHHHHH
Q 003164 475 LKVYGFNDKLPVLLSKILAIAKSFL---PSDDRFKVIKEDVVRTLKNTNMKP-LSHSSYLRLQVLCQ-SF--YDVDEKLS 547 (843)
Q Consensus 475 ~~~~g~s~~~~~~l~ll~~~l~~p~---~~~~~~~~~k~~~~~~l~~~~~~p-~~~~~~~~~~~l~~-~~--~~~~~~~~ 547 (843)
+.+++++++++.+++++.+.+.+|. |++++|+++|+.+++++++...+| ...+...+...+++ ++ ++..+..+
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLE 157 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHH
T ss_pred EEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHH
Confidence 9999999999999999999999999 999999999999999998866789 88888888887764 33 33456788
Q ss_pred HhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCCC
Q 003164 548 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 627 (843)
Q Consensus 548 ~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (843)
.|++++.+++++||+++|.+.+++++|+||++.+++.++++++++.++.++.+. .. .. ....+.... +. .+
T Consensus 158 ~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~-~~~~~~~~~--~~--~~ 228 (431)
T 3cx5_A 158 SLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPV--LK--KK-AAFLGSEVR--LR--DD 228 (431)
T ss_dssp HHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCC--CC--CC-CCCCCEEEE--EE--CT
T ss_pred HHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCC--CC--CC-CcccCceEE--Ec--CC
Confidence 999999999999999999999999999999999999999988666776543221 00 00 011122222 21 11
Q ss_pred CCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC-------------hhHHHHHhhhccccEEEEeeeeeeCCeeEEE
Q 003164 628 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-------------EPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 694 (843)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-------------s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~ 694 (843)
..+++.+.++|+. +..+.++.+++.+++.+|+ ++||++||+ +|++|+++++.....+.+.+.
T Consensus 229 ~~~~~~v~~~~~~----~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~ 303 (431)
T 3cx5_A 229 TLPKAWISLAVEG----EPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWG 303 (431)
T ss_dssp TSSSEEEEEEEEC----CCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEE
T ss_pred CCCceEEEEEeec----CCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEE
Confidence 2467788888887 5556677888888888886 799999997 599999999877544445555
Q ss_pred EEEeCCCCCh-hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh-cCcccccccH
Q 003164 695 FCIQSSKYNP-IYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLE--KDPSLTYESNRFWNQIT-DKRYMFDQSQ 770 (843)
Q Consensus 695 ~~i~s~~~~~-~~~~~~i~~~~~~~~~~l~~ite~el~~~k~~l~~~~~~--~~~s~~~~~~~~~~~i~-~~~~~~~~~~ 770 (843)
+++++ +| +++.++++.+.+++.++.+++|++||+++|..+++++.. ..+++...+..+|..++ .+. ..+ .+
T Consensus 304 i~~~~---~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~ 378 (431)
T 3cx5_A 304 FSTAT---RNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGS-KLS-LG 378 (431)
T ss_dssp EEEEE---SCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSS-CCC-HH
T ss_pred EEEee---CchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCC-CCC-HH
Confidence 66554 34 667777777777776655689999999999999999998 88998888888887654 443 333 57
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCC
Q 003164 771 KEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 812 (843)
Q Consensus 771 ~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~ 812 (843)
++.+.|+++|++||+++|++|+.++ +..++|+|+.+.
T Consensus 379 ~~~~~i~~vt~~dv~~~a~~~l~~~-----~~~~~v~g~~~~ 415 (431)
T 3cx5_A 379 EAFKKIDAITVKDVKAWAGKRLWDQ-----DIAIAGTGQIEG 415 (431)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTTC-----CCEEEEEESCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHcccC-----CcEEEEEcchhc
Confidence 8889999999999999999999863 678899998753
No 10
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=9.6e-34 Score=316.24 Aligned_cols=391 Identities=10% Similarity=0.013 Sum_probs=310.4
Q ss_pred CeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH---H--HHhHHhhhcccEeEEEE
Q 003164 394 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL---N--EIIYQASVAKLETSVSI 468 (843)
Q Consensus 394 p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~--~~~~~~~~~g~~~~~~~ 468 (843)
...++++||++||++++ . .|.+.+.+.+..|...++....++++++.+++..+. . +........|.+++...
T Consensus 24 ~~~~~L~nGl~v~~~~~-~--~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t 100 (439)
T 1pp9_B 24 LEFTRLPNGLVIASLEN-Y--APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100 (439)
T ss_dssp CEEEECTTSCEEEEECC-C--CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCcEEEEEeC-C--CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEe
Confidence 45678999999999998 4 577788888877665566667888999998875331 1 12222234477888888
Q ss_pred ecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhccCCC--CHHHHH
Q 003164 469 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFY--DVDEKL 546 (843)
Q Consensus 469 ~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~~--~~~~~~ 546 (843)
+.+++.+.+++++++++.+++++.+.+.+|.|++++|+++|+.++++++....+|..++...+...++++++ +..+..
T Consensus 101 ~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 180 (439)
T 1pp9_B 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPD 180 (439)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCG
T ss_pred cceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCCH
Confidence 899999999999999999999999999999999999999999999999987778998888888887775433 344667
Q ss_pred HHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCC
Q 003164 547 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 626 (843)
Q Consensus 547 ~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (843)
+.|++++.+++++||+++|.+.+++++|+|| +.+++.++++++++ ++..+.+. +. .... .+.... +..
T Consensus 181 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~---~~--~~~~-~~~~~~--~~~-- 248 (439)
T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLS---GA--KAKY-HGGEIR--EQN-- 248 (439)
T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CC---CC--CCCB-CCEEEE--EEC--
T ss_pred HHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCC---CC--CCCC-cCCeEE--ecC--
Confidence 8999999999999999999999999999999 99999999999988 77543211 10 0001 121222 221
Q ss_pred CCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh------------ChhHHHHHhhhccccEEEEeeeeeeCCeeEEE
Q 003164 627 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL------------EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 694 (843)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l------------~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~ 694 (843)
+ ..++.+.++|+. +..+.++.+++.+|+.+| +++||++||+++|++|+++++.....+.+.+.
T Consensus 249 ~-~~~~~v~~~~~~----~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~ 323 (439)
T 1pp9_B 249 G-DSLVHAALVAES----AAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG 323 (439)
T ss_dssp C-CSEEEEEEEEEC----CCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEE
T ss_pred C-ccceEEEEEecC----CCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEE
Confidence 2 356777778887 666678888999999998 48999999999999999999887655555555
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHH
Q 003164 695 FCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEA 773 (843)
Q Consensus 695 ~~i~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~ 773 (843)
+++.+ +|+++.++++.+.+++.++. .++|++||+++|..+++++....+++...+..+|..++.++ ..+..+++.
T Consensus 324 i~~~~---~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 399 (439)
T 1pp9_B 324 FYTIS---QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAG-SYTPPSTVL 399 (439)
T ss_dssp EEEEE---EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHS-SCCCHHHHH
T ss_pred EEEEe---CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 55553 68889999999999998877 58999999999999999998878888888888887766433 234567889
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCcc
Q 003164 774 EDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 814 (843)
Q Consensus 774 ~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~ 814 (843)
+.|++||++||+++|++|+. + ++.++|+|+.+.++
T Consensus 400 ~~i~~vt~~dv~~~a~~~~~-~-----~~~~~v~g~~~~~~ 434 (439)
T 1pp9_B 400 QQIDAVADADVINAAKKFVS-G-----RKSMAASGNLGHTP 434 (439)
T ss_dssp HHHHTCCHHHHHHHHHHHHH-S-----CEEEEEEECGGGCC
T ss_pred HHHhcCCHHHHHHHHHHHhc-C-----CceEEEECCcccCC
Confidence 99999999999999999996 3 68999999976554
No 11
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1.3e-33 Score=315.16 Aligned_cols=399 Identities=10% Similarity=0.036 Sum_probs=301.4
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEEEe
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSIF 469 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~~~ 469 (843)
..++++||++|++.+++. .|.+.+.+.+..|...++....++++++.+++..+.. +........|.+++...+
T Consensus 8 ~~~~L~NGl~v~~~~~~~--~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~ 85 (445)
T 3ami_A 8 FETTLPNGLKVVVREDHR--APTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTT 85 (445)
T ss_dssp EEEECTTSCEEEEEECTT--SSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEEC
T ss_pred EEEECCCCCEEEEEECCC--CCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccC
Confidence 467899999999999764 5667777777666555666678899999888754321 111111234678888888
Q ss_pred cceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-cCcCChhhHHHHHHHHhhcc-CCC--CHHHH
Q 003164 470 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLK-NTNMKPLSHSSYLRLQVLCQ-SFY--DVDEK 545 (843)
Q Consensus 470 ~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~-~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~ 545 (843)
.+.+.+.+.+.+++++.+|+++.+.+.+|.|+++.|+++|..++++++ +..++|...+.+.+...+++ ++| ...+.
T Consensus 86 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 165 (445)
T 3ami_A 86 RDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGW 165 (445)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCC
T ss_pred CCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCC
Confidence 888999999999999999999999999999999999999999999998 66678998888888887774 344 34567
Q ss_pred HHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccC
Q 003164 546 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 625 (843)
Q Consensus 546 ~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (843)
.++|++++.+++++||+++|.+.+++++|+||++.+++.++++++++.++.++.+....+ ....+.+...+ .+..
T Consensus 166 ~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~- 240 (445)
T 3ami_A 166 MNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQ---GEPQQAGVRRV-TVKA- 240 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCC---CCCCCCSCEEE-EEEE-
T ss_pred HHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC---CCCCCCCceEE-EEec-
Confidence 899999999999999999999999999999999999999999999999986532211000 00111222222 2221
Q ss_pred CCCCCCeEEEEEEeeccccCc---cc-HHHHHHHHHHHHHhC----hhHHHHHhhhccccEEEEeeeee-eCC-eeEEEE
Q 003164 626 NKCETNSVIELYFQIEQEKGM---EL-TRLKALIDLFDEILE----EPFFNQLRTKEQLGYVVECSPRV-TYR-VFGFCF 695 (843)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ll~~~l~----s~l~~~LRek~gl~Y~v~~~~~~-~~~-~~~~~~ 695 (843)
...++.+.+.|+. +. .+ .++.+.+.+++.+|+ +||+++||+++|++|++++++.. ..+ .+.+.+
T Consensus 241 --~~~~~~v~l~~~~----~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i 314 (445)
T 3ami_A 241 --PAELPYLALAWHV----PAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFIL 314 (445)
T ss_dssp --ECSSCEEEEEEEE----CCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEE
T ss_pred --CCCccEEEEEEEc----CCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEE
Confidence 1356677788887 55 55 777888888888774 89999999999999999998763 233 444555
Q ss_pred EEeCCCCChh-HHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHH
Q 003164 696 CIQSSKYNPI-YLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEA 773 (843)
Q Consensus 696 ~i~s~~~~~~-~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~ 773 (843)
++.+ .++ .+++.++.+.+++.++. .++|++||+++|+.+++++....++....+..+....+.+ .+.+...++.
T Consensus 315 ~~~~---~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 390 (445)
T 3ami_A 315 EGVP---SKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLG-LSWRDDDRFY 390 (445)
T ss_dssp EEEE---CTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTT-CCTTHHHHHH
T ss_pred EEEE---CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcC-CChHHHHHHH
Confidence 5544 333 35666776766666655 6899999999999999999988888777766665555443 3566778889
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCccc
Q 003164 774 EDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKE 815 (843)
Q Consensus 774 ~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~~ 815 (843)
+.|++||++||+++|++||.++ .+.++++|+.+.++.
T Consensus 391 ~~i~~vt~~dv~~~a~~~l~~~-----~~~~~~~~p~~~~~~ 427 (445)
T 3ami_A 391 QQLRSVTAAEVKAAAARLLTDD-----TLTVANLVPLPPDPK 427 (445)
T ss_dssp HHHHTCCHHHHHHHHHTTSCST-----TEEEEEEEEECC---
T ss_pred HHHHcCCHHHHHHHHHHHcCcC-----CeEEEEEccCccCcc
Confidence 9999999999999999999874 577888887654443
No 12
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.3e-33 Score=312.06 Aligned_cols=400 Identities=10% Similarity=0.042 Sum_probs=303.5
Q ss_pred CCeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEE
Q 003164 393 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVS 467 (843)
Q Consensus 393 ~p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~ 467 (843)
....++++||++|++++++. .+.+.+.+.+..+...++....++++++.+++..+.. +........|.+++..
T Consensus 6 ~~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (443)
T 1hr6_B 6 GTRTSKLPNGLTIATEYIPN--TSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAY 83 (443)
T ss_dssp CCEEEECTTSCEEEEEECSS--CSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEE
T ss_pred CceEEECCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 34567899999999998764 2356677777666555556678899999998753211 1111112237788888
Q ss_pred EecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCCC--HHH
Q 003164 468 IFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYD--VDE 544 (843)
Q Consensus 468 ~~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~~--~~~ 544 (843)
.+.+.+.+.+++++++++.+++++.+.+.+|.|++++|+++|+.++++++...++|...+...+...+++ ++|. ..+
T Consensus 84 t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 163 (443)
T 1hr6_B 84 TSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILG 163 (443)
T ss_dssp ECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSC
T ss_pred ECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 8888999999999999999999999999999999999999999999999988889998888888877764 3442 346
Q ss_pred HHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccc--eeeecCCCCeEEEEe
Q 003164 545 KLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQE--CVICLPSGANLVRNV 622 (843)
Q Consensus 545 ~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 622 (843)
..+.|++++.+++++||+++|.+.|++++|+||++.+++.++++++++.++..+.+.. .+.. ..... .+.... +
T Consensus 164 ~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~ 239 (443)
T 1hr6_B 164 PIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVP-LGSPRGPLPVF-CRGERF--I 239 (443)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCC-TTSCCSSCCCC-CCEEEE--E
T ss_pred CHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-cccccCCCCCC-CCCeEE--e
Confidence 7889999999999999999999999999999999999999999999999985432211 1100 00011 121211 2
Q ss_pred ccCCCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh-------------ChhHHHHHhhhccccEEEEeeeeeeCC
Q 003164 623 SVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYR 689 (843)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~l~~~LRek~gl~Y~v~~~~~~~~~ 689 (843)
. .+..+++.+.+.|+. +..+.++.+++.+++.+| +++|+++|||++|++|+++++.....+
T Consensus 240 ~--~~~~~~~~v~~~~~~----~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~ 313 (443)
T 1hr6_B 240 K--ENTLPTTHIAIALEG----VSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYAD 313 (443)
T ss_dssp E--CTTCSEEEEEEEEEC----CCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSS
T ss_pred c--cCCccceEEEEEEec----CCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCC
Confidence 1 223467777778877 556667778888888887 389999999999999999998776544
Q ss_pred eeEEEEEEeCCCCC--hhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccc
Q 003164 690 VFGFCFCIQSSKYN--PIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMF 766 (843)
Q Consensus 690 ~~~~~~~i~s~~~~--~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~ 766 (843)
.+.+.+++.+ + |+++.++++.+.+++.++. .++|++||+++|..+++++....++....+..+...++..+.+.
T Consensus 314 ~g~~~i~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 390 (443)
T 1hr6_B 314 SGLWGMYIVT---DSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRL 390 (443)
T ss_dssp CEEEEEEEEE---ETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCC
T ss_pred ceEEEEEEEe---cCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcC
Confidence 4455555543 4 6677788888888887766 46999999999999999999888888776666555443222234
Q ss_pred cccHHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCc
Q 003164 767 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 813 (843)
Q Consensus 767 ~~~~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~ 813 (843)
+ ..++.+.|++||++||+++|++|+.++ +..++|+|+.+.+
T Consensus 391 ~-~~~~~~~i~~vt~~dv~~~a~~~l~~~-----~~~~~v~g~~~~~ 431 (443)
T 1hr6_B 391 S-PEEVFEQVDKITKDDIIMWANYRLQNK-----PVSMVALGNTSTV 431 (443)
T ss_dssp C-HHHHHHHHHTCCHHHHHHHHHHHSSSC-----CEEEEEEECGGGC
T ss_pred C-HHHHHHHHHhCCHHHHHHHHHHHhccC-----CcEEEEECCcccC
Confidence 4 467889999999999999999999874 6889999986544
No 13
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=2.8e-33 Score=314.77 Aligned_cols=402 Identities=9% Similarity=0.010 Sum_probs=312.6
Q ss_pred CeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHH-----HHHhHHhhhcccEeEEEE
Q 003164 394 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL-----NEIIYQASVAKLETSVSI 468 (843)
Q Consensus 394 p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~g~~~~~~~ 468 (843)
....+++||++||+.+.+ .|.+.+.+.+..+...+++...++++++.+++..+. .+........|.+++...
T Consensus 6 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 6 FKLSSLANGLKVATSNTP---GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp CEEEECTTSCEEEEESCC---CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 456789999999998644 477788888877666666778899999999876431 122222334577888888
Q ss_pred ecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHH
Q 003164 469 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEK 545 (843)
Q Consensus 469 ~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~ 545 (843)
..+++.+.+++++++++.+++++.+.+.+|.|++++|+++|..++++++...++|..++.+.+...+++ ++| +..+.
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICP 162 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 889999999999999999999999999999999999999999999999987789999999888887774 333 34567
Q ss_pred HHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccC
Q 003164 546 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 625 (843)
Q Consensus 546 ~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (843)
.+.|++++.++|++||+++|.+.+++++|+| ++.+++.++++++++.++..+.+.. .+ .... .+... .+...
T Consensus 163 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~-~~---~~~~-~~~~~--~~~~~ 234 (475)
T 1hr6_A 163 RGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPIT-KK---VAQY-TGGES--CIPPA 234 (475)
T ss_dssp GGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCC-CC---CCCC-CCEEE--EECCC
T ss_pred HHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCC-CC---CCCC-cCCeE--EEecc
Confidence 7999999999999999999999999999999 9999999999999998875432210 00 0011 11111 12110
Q ss_pred ---CCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC---------------hhHHHHHhhhccccEEEEeeeeee
Q 003164 626 ---NKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE---------------EPFFNQLRTKEQLGYVVECSPRVT 687 (843)
Q Consensus 626 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~---------------s~l~~~LRek~gl~Y~v~~~~~~~ 687 (843)
.++..++.+.++|+. ++.+.++.+++.+|+.+|+ ++||++||+++|++|+++++....
T Consensus 235 ~~~~~~~~~~~v~~~~~~----~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~ 310 (475)
T 1hr6_A 235 PVFGNLPELFHIQIGFEG----LPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY 310 (475)
T ss_dssp CCCSSSCCCEEEEEEEEC----CCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEEC
T ss_pred cccCCCccceEEEEEEec----CCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEecccc
Confidence 023467778788885 4455567788889998875 899999999999999999988765
Q ss_pred CCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCc
Q 003164 688 YRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLE----GLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKR 763 (843)
Q Consensus 688 ~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l~----~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~ 763 (843)
.+.+.+.+++++ +|+++.++++.+.+++.++.+ ++|++||+++|..+++++....++....+..+|..++..+
T Consensus 311 ~~~g~~~i~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (475)
T 1hr6_A 311 SDSGIFGISLSC---IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHG 387 (475)
T ss_dssp SSCEEEEEEEEE---CGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEEe---CHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 555556666654 688899999999999987655 5999999999999999998888888888888888654333
Q ss_pred ccccccHHHHHHHhcCCHHHHHHHHHHhhccCCC----CcceEEEEEecCCCCcc
Q 003164 764 YMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSP----KCRRLAVRVWGCNTNIK 814 (843)
Q Consensus 764 ~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~~~----~~~~~~~~v~g~~~~~~ 814 (843)
...+ .+++.+.|++||++||+++|++|+.++.. .+++++++++|+...+.
T Consensus 388 ~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~ 441 (475)
T 1hr6_A 388 RKIP-VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFG 441 (475)
T ss_dssp CCCC-HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGC
T ss_pred CCCC-HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCc
Confidence 3344 66788999999999999999999976200 00368899999875443
No 14
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1e-32 Score=306.67 Aligned_cols=382 Identities=11% Similarity=0.058 Sum_probs=295.9
Q ss_pred EecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH----HhHHhhhc---ccEeEEEEe
Q 003164 397 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE----IIYQASVA---KLETSVSIF 469 (843)
Q Consensus 397 ~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~---g~~~~~~~~ 469 (843)
++++||++||+++++. .|.+.+.+.+..+...++ .++++++.+++..+... ..+...+. |.++++...
T Consensus 6 ~~L~nG~~v~~~~~~~--~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~ 80 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEK--YKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVS 80 (425)
T ss_dssp EEEETTEEEEEEECSS--CSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEE
T ss_pred eeccCCcEEEEEecCc--cceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeee
Confidence 6889999999999875 377888888877765433 57889999998754322 12333332 777777665
Q ss_pred cce----eEEEEcccCC-------CHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHH
Q 003164 470 SDK----LELKVYGFND-------KLPVLLSKILAIAKSFL-----PSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQ 533 (843)
Q Consensus 470 ~~~----~~~~~~g~s~-------~~~~~l~ll~~~l~~p~-----~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~ 533 (843)
.++ +.+.++++++ +++.+++++.+.+.+|. |++++|+++|+.+++++++...+|...+...+..
T Consensus 81 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~ 160 (425)
T 3d3y_A 81 KKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQS 160 (425)
T ss_dssp EETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 554 6888888886 69999999999999999 9999999999999999998777899988888888
Q ss_pred hhc-c-CCCC--HHHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCcccccccee
Q 003164 534 VLC-Q-SFYD--VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECV 609 (843)
Q Consensus 534 ~l~-~-~~~~--~~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 609 (843)
.++ + +++. ..+..+.|++++.+++++||+++|.+.+++++|+||++.+++.+++ ++++ ++..+.+.. + ..
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~--~--~~ 234 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKA--A--IF 234 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCC--C--SC
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccc--c--cc
Confidence 777 3 4443 5567889999999999999999999999999999999999999999 9888 875432110 0 01
Q ss_pred eecCCC--CeEEEEeccCCCCCCCeEEEEEEeeccccC-cccHHHHHHHHHHHHHh----ChhHHHHHhhhccccEEEEe
Q 003164 610 ICLPSG--ANLVRNVSVKNKCETNSVIELYFQIEQEKG-MELTRLKALIDLFDEIL----EEPFFNQLRTKEQLGYVVEC 682 (843)
Q Consensus 610 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~l----~s~l~~~LRek~gl~Y~v~~ 682 (843)
...|.+ ...+ ... +...++.+.++|+. + ..+.++.+++.+++.+| +++||++|||++|++|++++
T Consensus 235 ~~~~~~~~~~~~-~~~---~~~~~~~v~~~~~~----~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~ 306 (425)
T 3d3y_A 235 YNQPIRNVIEER-TER---EVLAQSKLNLAYNT----DIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASS 306 (425)
T ss_dssp CCCCCCSSCEEE-EEE---EECSSEEEEEEEEC----CCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEE
T ss_pred ccccCCCcceeE-Eec---CCccccEEEEEeec----CCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEec
Confidence 111211 1122 111 23467888888886 5 46677888899999998 89999999999999999999
Q ss_pred eeeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 003164 683 SPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITD 761 (843)
Q Consensus 683 ~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~ 761 (843)
++....+ .+.+++. ++|+++.++++.+.+++.++. .++|++||+++|..+++++....+++...+..+|..++.
T Consensus 307 ~~~~~~g--~~~i~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 307 SIDTFRG--FMTVQTG---IDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELM 381 (425)
T ss_dssp EEETTTT--EEEEEEE---ECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred cccccCc--eEEEEEe---cCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhh
Confidence 8764333 3334432 378889999999999888776 489999999999999999988788888888888887776
Q ss_pred -CcccccccHHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCC
Q 003164 762 -KRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNT 811 (843)
Q Consensus 762 -~~~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~ 811 (843)
+. .. ..+++.+.|++||++||+++|++|+. .-.++|+|.++
T Consensus 382 ~g~-~~-~~~~~~~~i~~vt~edv~~~a~~~~~-------~~~~~v~g~~~ 423 (425)
T 3d3y_A 382 PQT-ML-TAEEWIARINAVTIPEIQEVAKRLEL-------QAIFFLEGETE 423 (425)
T ss_dssp TTS-CC-CHHHHHHHHHHCCHHHHHHHHHHCEE-------EEEEEEEEECC
T ss_pred cCC-CC-CHHHHHHHHHhCCHHHHHHHHHhccC-------ceEEEEeCCCC
Confidence 43 33 36788999999999999999999863 24557777643
No 15
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.6e-32 Score=306.51 Aligned_cols=398 Identities=10% Similarity=0.004 Sum_probs=302.2
Q ss_pred CeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEEE
Q 003164 394 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSI 468 (843)
Q Consensus 394 p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~~ 468 (843)
....++.||++|++.+++ .|.+.+.+.+..+...++....++++++.+++..+.. +........|.+++...
T Consensus 14 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t 90 (446)
T 1pp9_A 14 TQVSQLDNGLRVASEQSS---QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYS 90 (446)
T ss_dssp CEEEECTTCCEEEEEECS---CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 456789999999998754 3666677777666555566778999999998754311 11111123477888888
Q ss_pred ecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHH
Q 003164 469 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEK 545 (843)
Q Consensus 469 ~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~ 545 (843)
+.+.+.+.+++++++++.+++++.+.+.+|.|++++|+++|..++++++...++|...+...+...+++ ++| ...+.
T Consensus 91 ~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 170 (446)
T 1pp9_A 91 TREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGP 170 (446)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 888999999999999999999999999999999999999999999999988889998888888877664 344 24567
Q ss_pred HHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccC
Q 003164 546 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 625 (843)
Q Consensus 546 ~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (843)
.+.|++++.++|++||+++|.+.|++++|+||++.+++.++++++++.++..+.+.. .+.+... ...+.... ...
T Consensus 171 ~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~-- 245 (446)
T 1pp9_A 171 SENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDA-VPTLSPC-RFTGSQIC-HRE-- 245 (446)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSC-CCCCCCC-CCCCEEEE-EEE--
T ss_pred HHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCc-cccCCCC-CCCCceEE-Eec--
Confidence 889999999999999999999999999999999999999999999998876432210 0000000 11122221 111
Q ss_pred CCCCCCeEEEEEEeeccccCcccHHHHHHHHHHHHHh-------------ChhHHHHHhhhccccEEEEeeeeeeCCeeE
Q 003164 626 NKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYRVFG 692 (843)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~ 692 (843)
+..+++.+.+.|+. +..+.++.+++.+++.+| +++|+++||+ +|++|+++++.....+.+.
T Consensus 246 -~~~~~~~v~~~~~~----~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~ 319 (446)
T 1pp9_A 246 -DGLPLAHVAIAVEG----PGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGL 319 (446)
T ss_dssp -TTSSSEEEEEEEEE----CCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEE
T ss_pred -CCccceEEEEEEec----CCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeE
Confidence 22357777788887 555566778888888877 5799999995 6899999988765444444
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHH
Q 003164 693 FCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKE 772 (843)
Q Consensus 693 ~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~ 772 (843)
+.+++.. +|+++.++++.+.+++.++.+++|++||+++|..+++++....++....+..+...++..+.+.+ ..++
T Consensus 320 ~~i~~~~---~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 395 (446)
T 1pp9_A 320 LGAHFVC---DHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP-LAEW 395 (446)
T ss_dssp EEEEEEE---CTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC-HHHH
T ss_pred EEEEEEE---CHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC-HHHH
Confidence 5555543 56778888888888887765679999999999999999987778877777766555433333334 5678
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCcc
Q 003164 773 AEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 814 (843)
Q Consensus 773 ~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~ 814 (843)
.+.|.++|++||+++|++|+.++ +..++|+|+.+.++
T Consensus 396 ~~~i~~vt~edv~~~a~~~~~~~-----~~~~~~~g~~~~~~ 432 (446)
T 1pp9_A 396 ESRIAEVDARVVREVCSKYFYDQ-----CPAVAGFGPIEQLP 432 (446)
T ss_dssp HHHHHTCCHHHHHHHHHHHTTTC-----CCEEEEEESCTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHcCCC-----CcEEEEECCcccCc
Confidence 89999999999999999999874 68889999976654
No 16
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-33 Score=309.30 Aligned_cols=302 Identities=16% Similarity=0.131 Sum_probs=243.4
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
++++|++ +|.|+++++++||++|.+|+++..++|.+++.+.+...++++|||+++++|++++|.+ ++.++|++
T Consensus 100 ~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~------~t~~~l~~ 172 (406)
T 3eoq_A 100 GLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA------LTREGMAA 172 (406)
T ss_dssp HHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH------CCHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------CCHHHHHH
Confidence 4789999 9999999999999999999999999999999988888889999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEcc-CceEEEEEEecCCch
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVK-DVHILDLTWTLPCLH 159 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~l~l~~~~p~~~ 159 (843)
||++||+|+||+|+|+||+|+++++++++++|++|++++.+.+ .+ |....++.+.+.... .+..+.+.|+.|...
T Consensus 173 f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 248 (406)
T 3eoq_A 173 YHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-YP---PLTPAFGVEERPYEKARALYLVALFPGVAYQ 248 (406)
T ss_dssp HHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-CC---CCCCCCEEEEEECTTCSSEEEEEEEECCCTT
T ss_pred HHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-CC---CCCCCCceEEEecCCccceEEEEEecCCCCC
Confidence 9999999999999999999999999999999999986543322 11 221123333333334 678999999987643
Q ss_pred hhhhcCcHHHHHHhhcCCCCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHH
Q 003164 160 QEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIK 239 (843)
Q Consensus 160 ~~~~~~~~~~l~~ll~~~~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~ 239 (843)
+ .+..++.+++.+|+++..++|+..||++||+++++++.... ...+.|.+.+.+.+ ++++++++.+.++++
T Consensus 249 ~-~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~ 319 (406)
T 3eoq_A 249 E-EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEA-----DRAGTFHAYVQADP---ARKGEVLAVLQEELD 319 (406)
T ss_dssp C-TTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEEC-----SSCEEEEEEEEECG---GGHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEeccc-----CCceEEEEEEEeCc---chHHHHHHHHHHHHH
Confidence 2 24468999999999887888999999999999998876532 35688999888875 378999999999999
Q ss_pred HHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHH-hccCcCceE
Q 003164 240 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLL-GFFMPENMR 317 (843)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~~ 317 (843)
++++.|+++++++++|......+.... +++...+..++..... .++.........+..+|+++|++++ ++|.++++
T Consensus 320 ~l~~~~~t~~el~~ak~~l~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~- 397 (406)
T 3eoq_A 320 RLGREGVGEEEVERAKTPLATGLVFAG-ETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL- 397 (406)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCcccE-
Confidence 999999999999999988776664333 3455666666654432 3333333334567889999999999 67888888
Q ss_pred EEEEeCC
Q 003164 318 IDVVSKS 324 (843)
Q Consensus 318 ~~~~~~~ 324 (843)
+++++|.
T Consensus 398 ~~vvGp~ 404 (406)
T 3eoq_A 398 YYLVLPH 404 (406)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 7788874
No 17
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=8.3e-33 Score=308.69 Aligned_cols=311 Identities=10% Similarity=0.082 Sum_probs=247.6
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhh-hhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFN-QALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIM 79 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~ 79 (843)
+++++++.+|.|+++++++||++|.+|++ +..++|..++.+.+...+|++|||+++++|+.++|.+ ++.++|+
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~------it~~~l~ 178 (445)
T 3ami_A 105 GLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQN------MTAQDVR 178 (445)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHH------CCHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhh------CCHHHHH
Confidence 47899999999999999999999999999 5678898888888877888999999999999999999 8999999
Q ss_pred HHHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCC--
Q 003164 80 KLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPC-- 157 (843)
Q Consensus 80 ~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~-- 157 (843)
+||++||+|+||+|+|+||+|+++++++|+++|++|+++..+.+... ..|.....+.+.+.....+..+.+.|+.|.
T Consensus 179 ~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~ 257 (445)
T 3ami_A 179 DWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQ-GEPQQAGVRRVTVKAPAELPYLALAWHVPAIV 257 (445)
T ss_dssp HHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCC-CCCCCCSCEEEEEEEECSSCEEEEEEEECCCS
T ss_pred HHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCCCceEEEEecCCCccEEEEEEEcCCcc
Confidence 99999999999999999999999999999999999986543322111 113222223333433346778999999987
Q ss_pred -chhhhhcCcHHHHHHhhcCCCCCcHHHHHh-hcCcccccccccCCCCCccCCc-eeEEEEEEEcCHhhHHhHHHHHHHH
Q 003164 158 -LHQEYLKKSEDYLAHLLGHEGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSI-AYIFVMSIHLTDSGLEKIFDIIGFV 234 (843)
Q Consensus 158 -~~~~~~~~~~~~l~~ll~~~~~~sL~~~L~-~~~l~~~~~~~~~~~~~~~~~~-~~~f~i~~~l~~~~~~~~~~~~~~l 234 (843)
.....+..++.+++.+|+++..++|+..|| ++||+++++++.... ... .+.|.|.+.+.+. .+.+++++.+
T Consensus 258 ~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~----~~~~~g~~~i~~~~~~~--~~~~~~~~~i 331 (445)
T 3ami_A 258 DLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSL----SRGQQGLFILEGVPSKG--VTIAQLETDL 331 (445)
T ss_dssp STTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCC----CSSCCEEEEEEEEECTT--CCHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeecccc----ccCCCCeEEEEEEECCC--CCHHHHHHHH
Confidence 331234468999999999877777888898 689999998876521 124 6788888877652 3589999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHH-hccC
Q 003164 235 YQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLL-GFFM 312 (843)
Q Consensus 235 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l-~~l~ 312 (843)
+++++++++.|++++++++++......+.... +++...+..++..+.. .++++.......+..+++++|++++ ++|.
T Consensus 332 ~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~ 410 (445)
T 3ami_A 332 RAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQ-DSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLT 410 (445)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcC
Confidence 99999999999999999999988777665443 3456777777776654 4555555555678899999999999 6888
Q ss_pred cCceEEEEEeCCC
Q 003164 313 PENMRIDVVSKSF 325 (843)
Q Consensus 313 ~~~~~~~~~~~~~ 325 (843)
++++.+++++|..
T Consensus 411 ~~~~~~~~~~p~~ 423 (445)
T 3ami_A 411 DDTLTVANLVPLP 423 (445)
T ss_dssp STTEEEEEEEEEC
T ss_pred cCCeEEEEEccCc
Confidence 9998888888754
No 18
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=9.9e-32 Score=301.77 Aligned_cols=399 Identities=11% Similarity=-0.027 Sum_probs=288.5
Q ss_pred CeEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH---HhHH----hh--hcccEe
Q 003164 394 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE---IIYQ----AS--VAKLET 464 (843)
Q Consensus 394 p~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~----~~--~~g~~~ 464 (843)
....++.||++||+.+++....|.+.+.+.+..|...++....++++++.+++..+... ..+. .. ..|.++
T Consensus 26 ~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~ 105 (492)
T 3go9_A 26 WQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLP 105 (492)
T ss_dssp EEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCC
T ss_pred eEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 34678999999999887654456788888887766667778899999999998764321 1111 11 246667
Q ss_pred EEEEecceeEEEEcccC---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHH-H-HhhccCC
Q 003164 465 SVSIFSDKLELKVYGFN---DKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLR-L-QVLCQSF 539 (843)
Q Consensus 465 ~~~~~~~~~~~~~~g~s---~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~-~-~~l~~~~ 539 (843)
+.+.+.+.+.+.+.+++ ++++.+++++.+++.+|.|++++|+++|..++++++...++|...+++.. . ...++++
T Consensus 106 na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (492)
T 3go9_A 106 PAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWRYRLKGSSLIGHD 185 (492)
T ss_dssp SEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHHHHTTTSTTTTCC
T ss_pred ceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCcccCC
Confidence 77777788889999888 56999999999999999999999999998777777766666765444311 1 1112222
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEE
Q 003164 540 YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLV 619 (843)
Q Consensus 540 ~~~~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (843)
+. .+.+++++.+++++||+++|.|+|++++|+||++.+++.++++++++.|+.+.......+. ........ ..
T Consensus 186 ~~----~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~--~~~~~~~~-~~ 258 (492)
T 3go9_A 186 PG----QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVAT--LAPLPPEP-VS 258 (492)
T ss_dssp TT----CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCC--CCCCCSSC-EE
T ss_pred Cc----hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCCCc-eE
Confidence 22 2578999999999999999999999999999999999999999999999864321110111 11111122 22
Q ss_pred EEeccCCCCCCCeEEEEEEeeccccCcc---c---HHHHHHHHHHHHHhChhHHHHHhh--hccccEEEEeeeeeeCCee
Q 003164 620 RNVSVKNKCETNSVIELYFQIEQEKGME---L---TRLKALIDLFDEILEEPFFNQLRT--KEQLGYVVECSPRVTYRVF 691 (843)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~ll~~~l~s~l~~~LRe--k~gl~Y~v~~~~~~~~~~~ 691 (843)
.+. . ...++.+.+.|.. +.. + ..++..+.+++.+|+++|+.+||+ ++|++|++++++....+.
T Consensus 259 -~~~--~-~~~q~~v~l~~~~----~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~~- 329 (492)
T 3go9_A 259 -LMN--E-QAAQDTLSLMWDT----PWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRAQ- 329 (492)
T ss_dssp -EEE--S-SCSSEEEEEEEEE----ECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEEE-
T ss_pred -EEc--C-CCCCcEEEEEecC----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhcc-
Confidence 122 1 2367788888876 322 1 134556789999999999999999 999999999987643322
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHhcCc--
Q 003164 692 GFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDP-----SLTYESNRFWNQITDKR-- 763 (843)
Q Consensus 692 ~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~-----s~~~~~~~~~~~i~~~~-- 763 (843)
..+++++ +++++++++..+.+++.++. .++|++||+++|..+++++....+ +....+..++..+..+.
T Consensus 330 -~~~~i~~---~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 405 (492)
T 3go9_A 330 -CAIHLNT---PVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVD 405 (492)
T ss_dssp -EEEEEEE---CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCC
T ss_pred -eEEEEEc---CcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 2345544 47788888888888888776 699999999999999999876532 34445555544443332
Q ss_pred -ccccccHHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCcccccc
Q 003164 764 -YMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEK 818 (843)
Q Consensus 764 -~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~~~~~~ 818 (843)
.+.++.+.+.+.|++||++||+++|++||.+ ...++|+|++..++.+.+
T Consensus 406 ~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~------~~~~vvvg~~~~~e~~~~ 455 (492)
T 3go9_A 406 IAPEQYQKLRQAFLSGLTLAELNRELKQQLSQ------DTTLVLMQPKGEPEVNVK 455 (492)
T ss_dssp BCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS------CCEEEEEEETTSCCCCHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCC------CCeEEEEcCCCCCCccHH
Confidence 2334444556779999999999999999986 367889998888887543
No 19
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.97 E-value=1.6e-30 Score=288.11 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=238.6
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
+++++++.+|.|+++++++||++|.+|+++..++|..++.+.+...++++|||+++++|+.++|.+ ++.++|++
T Consensus 100 ~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~------it~~~l~~ 173 (421)
T 3hdi_A 100 DTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNS------FNEGMLRH 173 (421)
T ss_dssp HHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHH------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh------CCHHHHHH
Confidence 478999999999999999999999999999999999999888888889999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCchh
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQ 160 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~ 160 (843)
||++||+|+||+|+|+||++ ++++++++++|+.|+++..+.+ .. .|.. ....+...+...+..+.+.|+.|...+
T Consensus 174 f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~-~~--~~~~-~~~~~~~~~~~~q~~v~~~~~~~~~~~ 248 (421)
T 3hdi_A 174 YMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQ-GE--KPMF-LPNRIVRKKETEQAHLCLGYPGLPIGD 248 (421)
T ss_dssp HHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCC-CC--CCCC-CCCEEEEECCCSEEEEEEEEECCCTTC
T ss_pred HHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCC-CC--CCCC-CCceEEecCCCCceEEEEEEecCCCCC
Confidence 99999999999999999999 9999999999999987643322 11 1221 223333334456678888998765432
Q ss_pred hhhcCcHHHHHHhhcCCCCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHH
Q 003164 161 EYLKKSEDYLAHLLGHEGRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIK 239 (843)
Q Consensus 161 ~~~~~~~~~l~~ll~~~~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~ 239 (843)
.+..++.+++.+|+++..+.|+..||+ +|++++++++.... .+.+.|.+.+.+.+ ++++++++.+.++++
T Consensus 249 -~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l~ 319 (421)
T 3hdi_A 249 -KDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSF-----RDSGMLTIYAGTGH---DQLDDLVYSIQETTS 319 (421)
T ss_dssp -TTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEEC-----SSCEEEEEEEEEEG---GGHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeeccc-----CCCceEEEEEEeCH---HHHHHHHHHHHHHHH
Confidence 244689999999998777889999996 69999988765422 35678888887765 378999999999999
Q ss_pred HHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCC-CCCccceeecCcccccCCHHHHHHHH-hccCcCceE
Q 003164 240 LLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMIKHLL-GFFMPENMR 317 (843)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~~ 317 (843)
++++.|+++++++++|......+.... +++...+..++.... ...+.........+..+|+++|++++ +++ ++++.
T Consensus 320 ~l~~~~~t~~el~~ak~~l~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~ 397 (421)
T 3hdi_A 320 ALAEKGLTEKELENGKEQLKGSLMLSL-ESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPS 397 (421)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCE
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc-ccCcE
Confidence 999999999999999887766654332 345555666554322 22222222233467889999999999 678 99999
Q ss_pred EEEEeCC
Q 003164 318 IDVVSKS 324 (843)
Q Consensus 318 ~~~~~~~ 324 (843)
+++++|.
T Consensus 398 ~~vvgp~ 404 (421)
T 3hdi_A 398 ISLINAN 404 (421)
T ss_dssp EEEEESS
T ss_pred EEEECch
Confidence 9888885
No 20
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.97 E-value=4.3e-30 Score=286.76 Aligned_cols=306 Identities=9% Similarity=-0.010 Sum_probs=235.1
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
++++|++.+|.|+++++++||++|.+|++...++|..++.+.+...++++|||+++++|+.++|.+ ++.++|++
T Consensus 111 ~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------~~~~~l~~ 184 (446)
T 1pp9_A 111 ELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRK------LSRADLTE 184 (446)
T ss_dssp HHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHh------CCHHHHHH
Confidence 478999999999999999999999999999999999888888888889999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCC-CCCcccccccccceEEEEEccCceEEEEEEecCCch
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKP-QFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLH 159 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~ 159 (843)
||++||+|+||+|+|+||+|+++++++++++|++|+++..+.+ .++. .|...........+..++..+.+.|+.|...
T Consensus 185 f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 263 (446)
T 1pp9_A 185 YLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLS-PCRFTGSQICHREDGLPLAHVAIAVEGPGWA 263 (446)
T ss_dssp HHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCC-CCCCCCEEEEEEETTSSSEEEEEEEEECCTT
T ss_pred HHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCC-CCCCCCceEEEecCCccceEEEEEEecCCCC
Confidence 9999999999999999999999999999999999986543321 1110 1211122222223334577899999987543
Q ss_pred hhhhcCcHHHHHHhhcC---------CCCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHH
Q 003164 160 QEYLKKSEDYLAHLLGH---------EGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDI 230 (843)
Q Consensus 160 ~~~~~~~~~~l~~ll~~---------~~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~ 230 (843)
+ .+..++.+++.+|++ +..+.|+..||++|++++++++.... ...+.|.+.+.+.+ ++++++
T Consensus 264 ~-~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~-----~~~g~~~i~~~~~~---~~~~~~ 334 (446)
T 1pp9_A 264 H-PDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICY-----ADTGLLGAHFVCDH---MSIDDM 334 (446)
T ss_dssp C-THHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEEC-----SSCEEEEEEEEECT---TSHHHH
T ss_pred C-ccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccC-----CCCeEEEEEEEECH---HHHHHH
Confidence 2 234689999999985 34567888999999999887765421 24578888887654 478999
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhC-CCCCccceeecCcccccCCHHHHHHHH-
Q 003164 231 IGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL-LIYPAEHVIYGEYMYEVWDEEMIKHLL- 308 (843)
Q Consensus 231 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~l- 308 (843)
++.+.++++++++ |++++++++++......+.... +++...+..++..+ ....+.........+..+|+++|++++
T Consensus 335 ~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~ 412 (446)
T 1pp9_A 335 MFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSHL-DGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCS 412 (446)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHS-CSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988 7999999998887766654332 34566666666543 221122222223457789999999999
Q ss_pred hccCcCceEEEEEeCC
Q 003164 309 GFFMPENMRIDVVSKS 324 (843)
Q Consensus 309 ~~l~~~~~~~~~~~~~ 324 (843)
+++.+++..+++++|.
T Consensus 413 ~~~~~~~~~~~~~g~~ 428 (446)
T 1pp9_A 413 KYFYDQCPAVAGFGPI 428 (446)
T ss_dssp HHTTTCCCEEEEEESC
T ss_pred HHcCCCCcEEEEECCc
Confidence 6788888888888874
No 21
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.96 E-value=8.3e-29 Score=274.80 Aligned_cols=304 Identities=11% Similarity=0.055 Sum_probs=237.3
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
+++++++.+|.|+++++++||++|.+|++...++|..++.+.+...++++|||+++. +.++|.+ ++.++|++
T Consensus 108 ~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~------it~~~l~~ 179 (424)
T 3amj_B 108 TILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQK------ISRDQLVS 179 (424)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHHH------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHHh------CCHHHHHH
Confidence 368999999999999999999999999999889999988888888888999999877 9999998 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCchh
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQ 160 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~ 160 (843)
||++||+|+||+|+|+||+++++++++++++|+.|+++..+.+. +.+ +. ..+..+.+.....+..+.+.|+.|....
T Consensus 180 f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 256 (424)
T 3amj_B 180 FHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPL-PDP-AM-PRATVERIANPATQAHIAIGMPTLKRGD 256 (424)
T ss_dssp HHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCC-CCC-CC-CCCEEEEEECSSSEEEEEEEEEEEBTTC
T ss_pred HHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCC-CCC-CC-CCCceEEeeCCCCccEEEeeccCCCCCC
Confidence 99999999999999999999999999999999999865433221 111 11 1233333332235677888888764322
Q ss_pred hhhcCcHHHHHHhhcCC-CCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHH
Q 003164 161 EYLKKSEDYLAHLLGHE-GRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYI 238 (843)
Q Consensus 161 ~~~~~~~~~l~~ll~~~-~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l 238 (843)
.+..++.+++.+|+++ ..++|+..||+ +|++++++++.... ...+.|.|.+.+.+ ++.+++++.+++++
T Consensus 257 -~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l 327 (424)
T 3amj_B 257 -PDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQ-----KSMGLFQIGFETRA---EKADEAVQVANDTL 327 (424)
T ss_dssp -TTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCB-----SSCEEEEEEEEEES---TTHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccC-----CCceeEEEEEEeCc---ccHHHHHHHHHHHH
Confidence 2346889999999986 55668899996 89999988876532 34577888887654 37889999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHH-hccCcCce
Q 003164 239 KLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLL-GFFMPENM 316 (843)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~ 316 (843)
+++++.|++++++++++......+.... .++...+..++..... .+++........+..+|+++|++++ ++|.++++
T Consensus 328 ~~l~~~~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~ 406 (424)
T 3amj_B 328 DAFLREGPTDAELQAAKDNLINGFALRL-DSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENL 406 (424)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHTSGGGG-SSHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGC
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhhhHhc-CCHHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccce
Confidence 9999999999999999887766665333 3456666666654432 4444333444567889999999999 68899999
Q ss_pred EEEEEeCCC
Q 003164 317 RIDVVSKSF 325 (843)
Q Consensus 317 ~~~~~~~~~ 325 (843)
.+++++|.+
T Consensus 407 ~~~~~~~~~ 415 (424)
T 3amj_B 407 ITVVVGGKA 415 (424)
T ss_dssp EEEEEECC-
T ss_pred EEEEECChh
Confidence 999999876
No 22
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.96 E-value=8.6e-29 Score=276.30 Aligned_cols=309 Identities=9% Similarity=-0.013 Sum_probs=233.9
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
+++++++.+|.|+++++++||++|.+|++...++|..++.+.+...++++|||+++++|+.++|.+ ++.++|++
T Consensus 105 ~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~------~~~~~l~~ 178 (443)
T 1hr6_B 105 DILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKS------ITRTDLKD 178 (443)
T ss_dssp HHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHH------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------CCHHHHHH
Confidence 368999999999999999999999999999989999888888888889999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCc--ccccccccceEEE-EEccCceEEEEEEecCC
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTV--EGTIWKACKLFRL-EAVKDVHILDLTWTLPC 157 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~--~~p~~~~~~~~~~-~~~~~~~~l~l~~~~p~ 157 (843)
||++||+|+||+|+|+||+++++++++++++|++|+++..+.+.... ..|... +....+ .+...+..+.+.|+.|.
T Consensus 179 f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 257 (443)
T 1hr6_B 179 YITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFC-RGERFIKENTLPTTHIAIALEGVS 257 (443)
T ss_dssp HHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCC-CEEEEEECTTCSEEEEEEEEECCC
T ss_pred HHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCC-CCeEEeccCCccceEEEEEEecCC
Confidence 99999999999999999999999999999999999865433221100 011111 222222 22235678889999875
Q ss_pred chhhhhcCcHHHHHHhhcC---------CCCCcHHHHHh-hcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhH
Q 003164 158 LHQEYLKKSEDYLAHLLGH---------EGRGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKI 227 (843)
Q Consensus 158 ~~~~~~~~~~~~l~~ll~~---------~~~~sL~~~L~-~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~ 227 (843)
..+ .+..++.+++.+|++ +..+.|+..|| ++|+++++++..... ...+.|.+.+.+. .|.+++
T Consensus 258 ~~~-~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~-----~~~g~~~i~~~~~-~~~~~~ 330 (443)
T 1hr6_B 258 WSA-PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSY-----ADSGLWGMYIVTD-SNEHNV 330 (443)
T ss_dssp TTC-TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEEC-----SSCEEEEEEEEEE-TTTCCH
T ss_pred CCC-ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCC-----CCceEEEEEEEec-CChhHH
Confidence 322 234688999999975 24567888999 689999887765421 2457888887764 112478
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhC-CCCCccceeecCcccccCCHHHHHH
Q 003164 228 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL-LIYPAEHVIYGEYMYEVWDEEMIKH 306 (843)
Q Consensus 228 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~ 306 (843)
+++++.+.++++++++.|++++++++++......+... .+++...+..++..+ ....+.+.......+..+++++|++
T Consensus 331 ~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~ 409 (443)
T 1hr6_B 331 RLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLS-LDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIM 409 (443)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTT-CCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHH
Confidence 99999999999999998999999999888776665533 234556666665543 2111222222334577899999999
Q ss_pred HH-hccCcCceEEEEEeCC
Q 003164 307 LL-GFFMPENMRIDVVSKS 324 (843)
Q Consensus 307 ~l-~~l~~~~~~~~~~~~~ 324 (843)
++ +++.+++..+++++|.
T Consensus 410 ~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 410 WANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp HHHHHSSSCCEEEEEEECG
T ss_pred HHHHHhccCCcEEEEECCc
Confidence 99 6788888888888874
No 23
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.96 E-value=1.9e-28 Score=272.93 Aligned_cols=306 Identities=13% Similarity=0.064 Sum_probs=240.2
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
+++++++.+|.|+++++++||++|.+|+++..++|..++.+.+..+++++|||+++.+|+.++|.+ ++.++|++
T Consensus 113 ~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------it~~~l~~ 186 (434)
T 3gwb_A 113 KLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPP------ITLAQLKA 186 (434)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTT------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHh------CCHHHHHH
Confidence 368899999999999999999999999999999999999888888888999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCchh
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQ 160 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~ 160 (843)
||++||+|+||+++|+||++++++.++++++|+.|+.+..+..... |....+....+.....+..+.+.|+.|....
T Consensus 187 f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 263 (434)
T 3gwb_A 187 FHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQ---PAEPKASIGHIEFPSSQTSLMLAQLGIDRDD 263 (434)
T ss_dssp HHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCC---CCCCCCEEEEEECCSSEEEEEEEEECCBTTC
T ss_pred HHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCC---CCCCCCceEEEeCCCCceeEEecCcCCCCCC
Confidence 9999999999999999999999999999999999987643221111 1111222222322235678888898775432
Q ss_pred hhhcCcHHHHHHhhcCC-CCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHH
Q 003164 161 EYLKKSEDYLAHLLGHE-GRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYI 238 (843)
Q Consensus 161 ~~~~~~~~~l~~ll~~~-~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l 238 (843)
.+..++.+++.+|+++ ..+.|+..||+ +|++++++++.... .+.+.|.|.+.+.+ ++.+++++.+.+++
T Consensus 264 -~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~-----~~~g~~~i~~~~~~---~~~~~~~~~i~~~l 334 (434)
T 3gwb_A 264 -PDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPM-----QARGPFMINLQTRA---EMSEGTLKLVQDVF 334 (434)
T ss_dssp -TTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCB-----SSCCEEEEEEEEEG---GGHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccC-----CCceeEEEEEecch---hhHHHHHHHHHHHH
Confidence 2336789999999987 56778899997 59999999876532 34578888888765 36889999999999
Q ss_pred HHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHH-hccCcCce
Q 003164 239 KLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLL-GFFMPENM 316 (843)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l-~~l~~~~~ 316 (843)
+++++.|++++++++++......+... .+++...+..++..... .+++........+..+|+++|++++ ++|.++++
T Consensus 335 ~~l~~~~~~~~el~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~ 413 (434)
T 3gwb_A 335 AEYLKNGPTQKELDDAKRELAGSFPLS-TASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKM 413 (434)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHC---C-CCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGGC
T ss_pred HHHHhcCCCHHHHHHHHHHHHhhhhhh-ccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhhE
Confidence 999999999999999998877666533 33466667766655432 4444433444567889999999999 58899999
Q ss_pred EEEEEeCCC
Q 003164 317 RIDVVSKSF 325 (843)
Q Consensus 317 ~~~~~~~~~ 325 (843)
.+++++|..
T Consensus 414 ~~~vvg~~~ 422 (434)
T 3gwb_A 414 VIVSAGPTV 422 (434)
T ss_dssp EEEEEECCC
T ss_pred EEEEEcCcc
Confidence 999888854
No 24
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.95 E-value=1.2e-27 Score=265.83 Aligned_cols=301 Identities=8% Similarity=0.025 Sum_probs=228.8
Q ss_pred Chhhhcchhcc-----CCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCC-CCCCCCccccCcHhhhhhhhhcCccH
Q 003164 1 MRFSQFFISPL-----MKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQ-LGHAFNKFFWGNKKSLIGAMEKGINL 74 (843)
Q Consensus 1 ~~~~~~~~~p~-----~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~G~~~~l~~~~~~~~~~ 74 (843)
+++++++.+|. |+++++++|+++|.+|++...++|..++.+.+...++ ++|||+++++|+.++|.+ ++
T Consensus 111 ~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~------~t 184 (425)
T 3d3y_A 111 DFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAE------ET 184 (425)
T ss_dssp HHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHH------CC
T ss_pred HHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHh------CC
Confidence 36889999999 9999999999999999999888998888887777888 899999999999999999 89
Q ss_pred HHHHHHHHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEe
Q 003164 75 QEQIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWT 154 (843)
Q Consensus 75 ~~~l~~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~ 154 (843)
.++|++||++||+|+||+|+|+||++++++.+++ ++|+ |+++..+.+..+...|.....+.+...+...+..+.+.|+
T Consensus 185 ~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 262 (425)
T 3d3y_A 185 AASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYN 262 (425)
T ss_dssp HHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCCSSCEEEEEEEECSSEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCCCcceeEEecCCccccEEEEEee
Confidence 9999999999999999999999999999999999 9999 9865432211110112211122333344457789999999
Q ss_pred cCCchhhhhcCcHHHHHHhhcCCCCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHH
Q 003164 155 LPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGF 233 (843)
Q Consensus 155 ~p~~~~~~~~~~~~~l~~ll~~~~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~ 233 (843)
.|......+..++.+++.+|+++..++|+..||+ +|+++++++.... ..+.|.|.+.+.+ ++++++++.
T Consensus 263 ~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~-------~~g~~~i~~~~~~---~~~~~~~~~ 332 (425)
T 3d3y_A 263 TDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDT-------FRGFMTVQTGIDG---KNRNQVLRL 332 (425)
T ss_dssp CCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEET-------TTTEEEEEEEECG---GGHHHHHHH
T ss_pred cCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccc-------cCceEEEEEecCH---hhHHHHHHH
Confidence 8632222344689999999998777889999996 6999998876542 2456777777654 478999999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHHhccC
Q 003164 234 VYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLLGFFM 312 (843)
Q Consensus 234 l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~l~ 312 (843)
++++++++++.|++++++++++......+.... +++...+..+...+.. ..+.+.......+..+++++|+++++.+.
T Consensus 333 ~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~ 411 (425)
T 3d3y_A 333 ISTELENIRLGKIRELEIEQTKAMLKNQYILAL-DNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLE 411 (425)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHCE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcc-cCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 999999999999999999999887766654333 3455666665554433 22333333345678899999999996555
Q ss_pred cCceEEEE
Q 003164 313 PENMRIDV 320 (843)
Q Consensus 313 ~~~~~~~~ 320 (843)
+++..+++
T Consensus 412 ~~~~~~v~ 419 (425)
T 3d3y_A 412 LQAIFFLE 419 (425)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEe
Confidence 66544433
No 25
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.95 E-value=9.4e-28 Score=269.75 Aligned_cols=303 Identities=9% Similarity=-0.005 Sum_probs=230.5
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
++++|++.+|.|++++|++||++|++|+++..++|..++.+.+..+++++|||+++.+|++++|.+ ++.++|++
T Consensus 103 ~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~------it~~~l~~ 176 (475)
T 1hr6_A 103 QLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS------ISKYYLLD 176 (475)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGG------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh------cCHHHHHH
Confidence 478999999999999999999999999999889999999888888889999999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEE------EccCceEEEEEEe
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLE------AVKDVHILDLTWT 154 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------~~~~~~~l~l~~~ 154 (843)
||++||+|+||+|+|+| +|+++++++|+++|+.|+++..+.+. . +.++ . +....+. +...+..+.+.|+
T Consensus 177 f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~~-~-~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 251 (475)
T 1hr6_A 177 YRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPITK-K-VAQY-T-GGESCIPPAPVFGNLPELFHIQIGFE 251 (475)
T ss_dssp HHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCCC-C-CCCC-C-CEEEEECCCCCCSSSCCCEEEEEEEE
T ss_pred HHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCCC-C-CCCC-c-CCeEEEecccccCCCccceEEEEEEe
Confidence 99999999999999999 99999999999999999865433111 1 1111 1 1222222 2345678899998
Q ss_pred cCCchhhhhcCcHHHHHHhhcCC-----------CCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHh
Q 003164 155 LPCLHQEYLKKSEDYLAHLLGHE-----------GRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDS 222 (843)
Q Consensus 155 ~p~~~~~~~~~~~~~l~~ll~~~-----------~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~ 222 (843)
.+...+ .+..++.+++.+|+++ ..++|+..||+ +|+++++.+..... ...+.|.|.+.+.+
T Consensus 252 ~~~~~~-~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~-----~~~g~~~i~~~~~~- 324 (475)
T 1hr6_A 252 GLPIDH-PDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY-----SDSGIFGISLSCIP- 324 (475)
T ss_dssp CCCTTC-TTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEEC-----SSCEEEEEEEEECG-
T ss_pred cCCCCC-ccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEecccc-----CCCceEEEEEEeCH-
Confidence 543322 2346789999999864 23678889986 69999988765421 24578888888765
Q ss_pred hHHhHHHHHHHHHHHHHHHHh---cCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCC-CCCccceeecCccccc
Q 003164 223 GLEKIFDIIGFVYQYIKLLRQ---VSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEV 298 (843)
Q Consensus 223 ~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~ 298 (843)
++++++++.++++++++++ .|++++++++++......+... .+++...+..++..+. ...+.........+..
T Consensus 325 --~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 401 (475)
T 1hr6_A 325 --QAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMN-LESKLVELEDMGRQVLMHGRKIPVNEMISKIED 401 (475)
T ss_dssp --GGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 4788999999999999988 6899999999888776665433 2345556666665432 1111122223346788
Q ss_pred CCHHHHHHHH-hccCc---------CceEEEEEeCC
Q 003164 299 WDEEMIKHLL-GFFMP---------ENMRIDVVSKS 324 (843)
Q Consensus 299 ~~~~~i~~~l-~~l~~---------~~~~~~~~~~~ 324 (843)
+++++|++++ +++.+ +++.+++++|.
T Consensus 402 vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 402 LKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp CCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred CCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 9999999998 67777 57777777763
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.95 E-value=1.5e-27 Score=265.30 Aligned_cols=305 Identities=12% Similarity=-0.004 Sum_probs=233.5
Q ss_pred Chhhhcchhcc---CCcchHHHHHHhhHhHhhhhcCCh-HHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHH
Q 003164 1 MRFSQFFISPL---MKVEAMEREVLAVDSEFNQALQND-ACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQE 76 (843)
Q Consensus 1 ~~~~~~~~~p~---~~~~~i~~Er~vV~~E~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~ 76 (843)
+++++++.+|. |+++++++||++|.+|++...++| ..++.+.+...++++|||+++++|+.++|.+ ++.+
T Consensus 92 ~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~------~t~~ 165 (431)
T 3cx5_A 92 DFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLEN------LVVA 165 (431)
T ss_dssp HHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHT------CCHH
T ss_pred HHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhh------CCHH
Confidence 46899999999 999999999999999999888888 8888887777788999999999999999999 8999
Q ss_pred HHHHHHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEE-EEccCceEEEEEEec
Q 003164 77 QIMKLYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRL-EAVKDVHILDLTWTL 155 (843)
Q Consensus 77 ~l~~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~l~l~~~~ 155 (843)
+|++||++||+|+||+|+|+||+++++++++++++|++|+++..+.+ .. |....+..+.+ .+..++..+.+.|+.
T Consensus 166 ~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~ 241 (431)
T 3cx5_A 166 DLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVL-KK---KAAFLGSEVRLRDDTLPKAWISLAVEG 241 (431)
T ss_dssp HHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCC-CC---CCCCCCEEEEEECTTSSSEEEEEEEEC
T ss_pred HHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCC-CC---CCcccCceEEEcCCCCCceEEEEEeec
Confidence 99999999999999999999999999999999998989986543321 11 11112222333 222356789999998
Q ss_pred CCchhhhhcCcHHHHHHhhcCC---------CCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHh
Q 003164 156 PCLHQEYLKKSEDYLAHLLGHE---------GRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEK 226 (843)
Q Consensus 156 p~~~~~~~~~~~~~l~~ll~~~---------~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~ 226 (843)
|...+ .+..++.+++.+|+++ ..+.|+..||++|++++++++.... ...+.|.+.+.+.+. ++
T Consensus 242 ~~~~~-~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~-----~~~g~~~i~~~~~~~--~~ 313 (431)
T 3cx5_A 242 EPVNS-PNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSY-----KDSGLWGFSTATRNV--TM 313 (431)
T ss_dssp CCTTC-TTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEEC-----SSCEEEEEEEEESCT--TC
T ss_pred CCCCC-ccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeeccc-----CCCceEEEEEeeCch--hh
Confidence 76432 2346789999999862 3467899999999999988765421 245778888877641 37
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhcccccC-CCCChHHHHHHHHHhCC-CCCccceeecCcccccCCHHHH
Q 003164 227 IFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFA-EEQPQDDYAAELAGNLL-IYPAEHVIYGEYMYEVWDEEMI 304 (843)
Q Consensus 227 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i 304 (843)
.+++++.+.++++++++ |++++++++++......+... ..+++...+..++..+. ...+.........+..+++++|
T Consensus 314 ~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv 392 (431)
T 3cx5_A 314 IDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDV 392 (431)
T ss_dssp HHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Confidence 88999999999999999 999999999888776665540 23345666666665432 1112222223346788999999
Q ss_pred HHHH-hccCcCceEEEEEeCC
Q 003164 305 KHLL-GFFMPENMRIDVVSKS 324 (843)
Q Consensus 305 ~~~l-~~l~~~~~~~~~~~~~ 324 (843)
++++ +++.+++..+++++|.
T Consensus 393 ~~~a~~~l~~~~~~~~v~g~~ 413 (431)
T 3cx5_A 393 KAWAGKRLWDQDIAIAGTGQI 413 (431)
T ss_dssp HHHHHHHTTTCCCEEEEEESC
T ss_pred HHHHHHHcccCCcEEEEEcch
Confidence 9998 5788888888888874
No 27
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=1.2e-25 Score=274.71 Aligned_cols=396 Identities=9% Similarity=-0.022 Sum_probs=288.6
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH------HHhHHhhhcccEeEEEE
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN------EIIYQASVAKLETSVSI 468 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~g~~~~~~~ 468 (843)
..+++.||++|++.+++. .|.+.+.+.+..|...++....|+++++.+|+..+.. .........|.+++...
T Consensus 22 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T 99 (939)
T 1q2l_A 22 QAIRLDNGMVVLLVSDPQ--AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99 (939)
T ss_dssp EEEEETTSCEEEEEECTT--CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEECCC--CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEE
Confidence 356899999999999875 5678888888777666777888999999999864321 11111233477888888
Q ss_pred ecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHH
Q 003164 469 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEK 545 (843)
Q Consensus 469 ~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~ 545 (843)
+.+.+.+.+...+++++.+|+++.+.+.+|.|+++.++++|..+.++++...++|...+...+...+++ ++| ...|.
T Consensus 100 ~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~ 179 (939)
T 1q2l_A 100 APYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGN 179 (939)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCC
T ss_pred CCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCC
Confidence 888999999999999999999999999999999999999999999999998888888888888887765 343 34677
Q ss_pred HHHhcc----CCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeEEEE
Q 003164 546 LSILHG----LSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 621 (843)
Q Consensus 546 ~~~l~~----it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (843)
.++|++ ++.++|++||+++|+|+|++++|+||++.+++.++++++++.++.++.+....+.+ .. .+......+.
T Consensus 180 ~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 257 (939)
T 1q2l_A 180 LETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVP-VV-TDAQKGIIIH 257 (939)
T ss_dssp HHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSC-SC-CGGGSSEEEE
T ss_pred HHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCC-CC-CHHHcCEEEE
Confidence 899999 99999999999999999999999999999999999999999998643321101100 00 1111112212
Q ss_pred eccCCCCCCCeEEEEEEeeccccCcc-cH----HHHHHHHHHHHHhChhHHHHHhhhccccEEEEeeeeee--CCeeEEE
Q 003164 622 VSVKNKCETNSVIELYFQIEQEKGME-LT----RLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVT--YRVFGFC 694 (843)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~ll~~~l~s~l~~~LRek~gl~Y~v~~~~~~~--~~~~~~~ 694 (843)
+. +...++.+.+.|+. +.. +. ...++..+|++..+++|+.+||+ +|++|+++++.... .+.+.+.
T Consensus 258 ~~---~~~~~~~l~i~~~~----~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~-~gl~~~~~a~~~~~~~~~~g~f~ 329 (939)
T 1q2l_A 258 YV---PALPRKVLRVEFRI----DNNSAKFRSKTDELITYLIGNRSPGTLSDWLQK-QGLVEGISANSDPIVNGNSGVLA 329 (939)
T ss_dssp EC---CSSCCCEEEEEEEE----ECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHH-TTCEEEEEEEEESSTTSSEEEEE
T ss_pred EE---eCCCCcEEEEEEEc----CChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHH-cCCchheeeccccccCCCceEEE
Confidence 21 23467777778877 332 22 23344455555557899999995 69999999885322 2334445
Q ss_pred EEEeCCCCCh---hHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCccccccc
Q 003164 695 FCIQSSKYNP---IYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWNQITDKRYMFDQS 769 (843)
Q Consensus 695 ~~i~s~~~~~---~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~-~s~~~~~~~~~~~i~~~~~~~~~~ 769 (843)
+++.. .+ +++++++..+.+++..+. .+++++||+++|..+..++.... ++....+..+...+.. ++.+..
T Consensus 330 i~~~~---~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 404 (939)
T 1q2l_A 330 ISASL---TDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIR--VPVEHT 404 (939)
T ss_dssp EEEEE---CHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTT--SCGGGT
T ss_pred EEEEE---ChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhc--CCHHHH
Confidence 55543 23 467777777777777665 68999999999999999997654 4555555555444442 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCCCCc
Q 003164 770 QKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 813 (843)
Q Consensus 770 ~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~~ 813 (843)
......++++|+++|++++++ +.++ .+.++++|+....
T Consensus 405 ~~~~~~i~~vt~~~i~~~~~~-l~~~-----~~~~~~~~p~~~~ 442 (939)
T 1q2l_A 405 LDAVNIADRYDAKAVKERLAM-MTPQ-----NARIWYISPKEPH 442 (939)
T ss_dssp TTTTTCCCCCCHHHHHHHHHH-CSGG-----GCEEEEECTTCCC
T ss_pred hcCchhhhccCHHHHHHHHHh-cCHH-----HcEEEEEcCCCCC
Confidence 444567999999999999987 6553 5677888876554
No 28
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.94 E-value=3.7e-26 Score=254.78 Aligned_cols=299 Identities=11% Similarity=0.042 Sum_probs=228.4
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
+++++++.+|.|+++++++||++|.+|++...++|..++.+.+...+++ |||+++++|+.++|.+ ++.++|++
T Consensus 121 ~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~------it~~~l~~ 193 (439)
T 1pp9_B 121 EFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGK------VTPVELHD 193 (439)
T ss_dssp HHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTT------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhh------cCHHHHHH
Confidence 3688999999999999999999999999998889988888877777888 9999999999999999 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCchh
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLHQ 160 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~ 160 (843)
||++||+|+||+++|+|| ++++++++++++|+ |+++..+.+ . ..++ .. ..+.+........+.+.|+.|...+
T Consensus 194 f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~~-~--~~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 266 (439)
T 1pp9_B 194 YVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLSG-A--KAKY-HG-GEIREQNGDSLVHAALVAESAAIGS 266 (439)
T ss_dssp HHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CCC-C--CCCB-CC-EEEEEECCCSEEEEEEEEECCCTTS
T ss_pred HHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCCC-C--CCCC-cC-CeEEecCCccceEEEEEecCCCCCc
Confidence 999999999999999999 99999999999998 986543221 1 1122 12 2222332345678889999875432
Q ss_pred hhhcCcHHHHHHhhcCCC--------CCcHHHHHh-hcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHH
Q 003164 161 EYLKKSEDYLAHLLGHEG--------RGSLHSFLK-GRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDII 231 (843)
Q Consensus 161 ~~~~~~~~~l~~ll~~~~--------~~sL~~~L~-~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~ 231 (843)
.+..++.+++++|++++ .++|+..|| ++|++++++++.... ...+.|.+.+.+.+ +++++++
T Consensus 267 -~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~-----~~~g~~~i~~~~~~---~~~~~~~ 337 (439)
T 1pp9_B 267 -AEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASY-----SDSGLFGFYTISQA---ASAGDVI 337 (439)
T ss_dssp -HHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEE-----TTEEEEEEEEEEEG---GGHHHHH
T ss_pred -hHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccc-----cccceEEEEEEeCH---HHHHHHH
Confidence 23468899999998753 577899999 579999888765421 24677888887754 4789999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeecCcccccCCHHHHHHHH-h
Q 003164 232 GFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEYMYEVWDEEMIKHLL-G 309 (843)
Q Consensus 232 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~l-~ 309 (843)
+.++++++++++.|++++++++++......+.... +++...+..++..... ..+.........+..+++++|++++ +
T Consensus 338 ~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~ 416 (439)
T 1pp9_B 338 KAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSV-ESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKK 416 (439)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999998887766554332 3355666655544332 2233322334467889999999998 5
Q ss_pred ccCcCceEEEEEeCC
Q 003164 310 FFMPENMRIDVVSKS 324 (843)
Q Consensus 310 ~l~~~~~~~~~~~~~ 324 (843)
++. +++.+++++|.
T Consensus 417 ~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 417 FVS-GRKSMAASGNL 430 (439)
T ss_dssp HHH-SCEEEEEEECG
T ss_pred Hhc-CCceEEEECCc
Confidence 665 77778777774
No 29
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.92 E-value=3.5e-23 Score=249.35 Aligned_cols=402 Identities=10% Similarity=0.032 Sum_probs=268.3
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHH-----HhHHhh--hcccEeEEE
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQAS--VAKLETSVS 467 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~--~~g~~~~~~ 467 (843)
....+.||++|++.+++. .+...+.+.+.+. .++....|+++++.+++..+... ....-. ..|..++..
T Consensus 88 ~~~~l~nGl~vl~i~~~~--~~~~~~~f~vg~~--tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~ 163 (1193)
T 3s5m_A 88 VYQHKKAKTQVISLGTND--PLDVEQAFAFYVK--TLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAY 163 (1193)
T ss_dssp EEEETTTCCEEEEEEECC--TTCCCEEEEEEEE--CCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEE
T ss_pred EEEECCCCCEEEEEECCC--CCeEEEEEEEEEC--CCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeE
Confidence 345689999999998875 2212233333222 23455678999999987654321 111111 145667777
Q ss_pred EecceeEEEEcccC-CCHHHHHHHHHHHHhcCCCCHHH--HHHH-----------------------------HHHHHHH
Q 003164 468 IFSDKLELKVYGFN-DKLPVLLSKILAIAKSFLPSDDR--FKVI-----------------------------KEDVVRT 515 (843)
Q Consensus 468 ~~~~~~~~~~~g~s-~~~~~~l~ll~~~l~~p~~~~~~--~~~~-----------------------------k~~~~~~ 515 (843)
...+.+.+.+.+.+ ++++.+++++.+.+.+|.++++. |..+ |..+.++
T Consensus 164 T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E 243 (1193)
T 3s5m_A 164 TFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNE 243 (1193)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHH
T ss_pred EcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHH
Confidence 77888999998777 89999999999999999998877 7765 4678899
Q ss_pred HhcCcCChhhHHHHHHHHhhccC-CC--CHHHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHh
Q 003164 516 LKNTNMKPLSHSSYLRLQVLCQS-FY--DVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKS 592 (843)
Q Consensus 516 l~~~~~~p~~~~~~~~~~~l~~~-~~--~~~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~ 592 (843)
++...++|..++.+.+...+++. +| ...|..+.|.++|++++++||+++|.|+|+.++|+||++.+++.++++++++
T Consensus 244 ~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~ 323 (1193)
T 3s5m_A 244 MKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLG 323 (1193)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHT
T ss_pred HHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhc
Confidence 98888899999999988888753 33 4567889999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCc---cccccceeeecCCCCeEEEEeccCCCCCCCeEEEEEEeeccccCc-----cc----------------
Q 003164 593 IFSVQPLPI---EMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGM-----EL---------------- 648 (843)
Q Consensus 593 ~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------- 648 (843)
.|+.++.+. ...+.... .............. +...++.+.+.|.+ +. .+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~q~~l~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~y 396 (1193)
T 3s5m_A 324 QLDYSKYRDDAVESVEYQTY--KKGPFYIKKKYGDH-SEEKENLVSVAWLL----NPKVDKTNNHNNNHSNNQSSENNGY 396 (1193)
T ss_dssp TCCGGGCCCCCCCCCCCCBC--CCCCEEEEEEEECC-CSSCCEEEEEEEES----SCBCC--------------------
T ss_pred cCCCCCCCcccccccCCCCC--CCCCeEEEEecCCC-CCccccEEEEEEEe----cCccccccccccccccccccccccc
Confidence 997543211 00110000 11111111111111 12456777777776 32 12
Q ss_pred -------------HHHHHHHHHHHHHh----ChhHHHHHhhhccccEEEE-eeeeeeCCeeEEEEEEeCCC-CC-----h
Q 003164 649 -------------TRLKALIDLFDEIL----EEPFFNQLRTKEQLGYVVE-CSPRVTYRVFGFCFCIQSSK-YN-----P 704 (843)
Q Consensus 649 -------------~~~~~~~~ll~~~l----~s~l~~~LRek~gl~Y~v~-~~~~~~~~~~~~~~~i~s~~-~~-----~ 704 (843)
.++.+++.+|+.+| +|+||++||+ .||||+++ +++......+.|.++++... .+ +
T Consensus 397 ~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~ 475 (1193)
T 3s5m_A 397 SNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNF 475 (1193)
T ss_dssp --CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCG
T ss_pred ccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChhhccccch
Confidence 57888888888886 7899999998 59999998 66665555555666654321 11 2
Q ss_pred hHH-HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCC-CCChHHHHH--H-HHHHHhcCcccccc--cHHHHHHH
Q 003164 705 IYL-QERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEK-DPSLTYESN--R-FWNQITDKRYMFDQ--SQKEAEDL 776 (843)
Q Consensus 705 ~~~-~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~-~~s~~~~~~--~-~~~~i~~~~~~~~~--~~~~~~~i 776 (843)
+.+ ++..+.+.+++.++. +|+++++|+++|..+..++... ..++.+..- . +-.++..++ ++.. .+..++.+
T Consensus 476 ~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~d-p~~~l~~~~~l~~l 554 (1193)
T 3s5m_A 476 DKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRD-PLLIFEFEKYLNIV 554 (1193)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCC-TTTTTSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 223 344454555555544 7999999999999998888652 223332211 1 112333333 3332 23445555
Q ss_pred hcCC---HHHHHHHHHHhhccCCCCcceEEEEEecCCCC
Q 003164 777 KSIK---KNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 812 (843)
Q Consensus 777 ~~it---~edi~~~a~~~l~~~~~~~~~~~~~v~g~~~~ 812 (843)
++.+ +.++++++++||... ..+..+++.+++.-
T Consensus 555 ~~~~~~~~~~~~~li~~yll~n---~~~~~~~~~P~~~~ 590 (1193)
T 3s5m_A 555 KNKIKNEPMYLEKFVEKHFINN---AHRSVILLEGDENY 590 (1193)
T ss_dssp HHHHHHSTTHHHHHHHHHTTTC---CCEEEEEEEEESSH
T ss_pred HHHhhcChHHHHHHHHHHhccC---CceEEEEEEcCCCH
Confidence 5543 559999999999542 35788888887633
No 30
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.92 E-value=7.7e-25 Score=245.73 Aligned_cols=297 Identities=11% Similarity=0.046 Sum_probs=208.0
Q ss_pred ChhhhcchhccCCcchHHHHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAMEREVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIMK 80 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~~ 80 (843)
++++|++.+|.|+++++++||.+|.+|++...+++....+. ..+++.+++++++.| ++|.+ +++++|++
T Consensus 133 ~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~i~~------it~~dL~~ 201 (492)
T 3go9_A 133 AWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSSLIGHDPGQ--PVTQP------VDVEKLKQ 201 (492)
T ss_dssp HHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTSTTTTCCTTC--CCCSS------CCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccCCcccCCCch--hhhhc------CCHHHHHH
Confidence 47899999999999999999999999998877777654442 234566777766655 57888 89999999
Q ss_pred HHHhccCccccEEEEecCCCHHHHHHHHHHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCch-
Q 003164 81 LYMNYYQGGLMKLVVIGGEPLDTLQSWVVELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCLH- 159 (843)
Q Consensus 81 fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~~- 159 (843)
||++||+|+||+|+|+||+|+++++++|+++|++|+.+..+++..+...|. ...++..+.....+..+.+.|+.|...
T Consensus 202 fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~v~l~~~~~~~~~ 280 (492)
T 3go9_A 202 FYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPL-PPEPVSLMNEQAAQDTLSLMWDTPWHPI 280 (492)
T ss_dssp HHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCC-CSSCEEEEESSCSSEEEEEEEEEECCCC
T ss_pred HHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC-CCCceEEEcCCCCCcEEEEEecCCCCCc
Confidence 999999999999999999999999999999999998754322111111122 223433333334678999999987532
Q ss_pred hhh----hcCcHHHHHHhhcCCCCCcHHHHHhh---cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHH
Q 003164 160 QEY----LKKSEDYLAHLLGHEGRGSLHSFLKG---RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIG 232 (843)
Q Consensus 160 ~~~----~~~~~~~l~~ll~~~~~~sL~~~L~~---~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~ 232 (843)
.++ +.....+++.+|++ .|...|++ +|++++++++.... ...+.|.+.. .. .+++++++
T Consensus 281 ~d~~~l~~~~~~~v~~~iLg~----~L~~~lre~~~~gl~y~~~s~~~~~-----~~~~~~~i~~--~~---~~~~~a~~ 346 (492)
T 3go9_A 281 QDSMALSRYWRSDLAREALFW----HIKQVLEKNNQKNLKLGFDCRVQYQ-----RAQCAIHLNT--PV---ENLTANMT 346 (492)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH----HHHHHHHHSCCTTCEEEEEEEEETT-----EEEEEEEEEE--CG---GGHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhccccccccCchhhhh-----hcceEEEEEc--Cc---ccHHHHHH
Confidence 111 11234789999983 67788885 78999888765431 2345555543 32 58999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHhhhcccccC----CCCChHHHHHHHHHhC----CCCCccceeec-CcccccCCHHH
Q 003164 233 FVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFA----EEQPQDDYAAELAGNL----LIYPAEHVIYG-EYMYEVWDEEM 303 (843)
Q Consensus 233 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l----~~~~~~~~~~~-~~~~~~~~~~~ 303 (843)
.+.++++++++.|+++++++++|......+... ...+...++..+...+ ....+++.+.. ...+..+|+++
T Consensus 347 ~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ed 426 (492)
T 3go9_A 347 FVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAE 426 (492)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999887665554321 1223344455544322 22244444432 34578999999
Q ss_pred HHHHH-hccCcCceEEEEEeC
Q 003164 304 IKHLL-GFFMPENMRIDVVSK 323 (843)
Q Consensus 304 i~~~l-~~l~~~~~~~~~~~~ 323 (843)
|++++ ++|.++...+++..+
T Consensus 427 V~~~a~~~l~~~~~~vvvg~~ 447 (492)
T 3go9_A 427 LNRELKQQLSQDTTLVLMQPK 447 (492)
T ss_dssp HHHHHHHHHTSCCEEEEEEET
T ss_pred HHHHHHHHhCCCCeEEEEcCC
Confidence 99999 678876554444433
No 31
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.91 E-value=3.1e-23 Score=254.69 Aligned_cols=394 Identities=10% Similarity=0.007 Sum_probs=280.0
Q ss_pred eEEecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH------HHhHHhhhcccEeEEEE
Q 003164 395 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN------EIIYQASVAKLETSVSI 468 (843)
Q Consensus 395 ~~~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~g~~~~~~~ 468 (843)
..+++.||++|++.+++. .|++.+.+.+..+...++.+..|+++++.+++..+.. .........|..++...
T Consensus 36 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T 113 (990)
T 3cww_A 36 RGLELANGIKVLLISDPT--TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFT 113 (990)
T ss_dssp EEEEETTCCEEEEEECTT--CSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEeCCCCEEEEEECCC--CCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEE
Confidence 356899999999999875 5677888888776666677789999999999764321 11111122466788888
Q ss_pred ecceeEEEEcccCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHhhcc-CCC--CHHHH
Q 003164 469 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFY--DVDEK 545 (843)
Q Consensus 469 ~~~~~~~~~~g~s~~~~~~l~ll~~~l~~p~~~~~~~~~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~-~~~--~~~~~ 545 (843)
..+.+.+.+...+++++.+++++.+.+.+|.|+++.|++++..+.++++....+|...+...+...+++ ++| ...|.
T Consensus 114 ~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~ 193 (990)
T 3cww_A 114 SGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGN 193 (990)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCC
T ss_pred CCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCC
Confidence 888888888889999999999999999999999999999999999999987778887777777777764 333 34566
Q ss_pred HHHhccC-------CHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcCCCCCCccccccceeeecCCCCeE
Q 003164 546 LSILHGL-------SLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANL 618 (843)
Q Consensus 546 ~~~l~~i-------t~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 618 (843)
.+.|..+ ++++|++||+++|+|+|++++|+||++.+++.++++++++.++.++.+...++.+ +.........
T Consensus 194 ~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~ 272 (990)
T 3cww_A 194 KYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEH-PFQEEHLKQL 272 (990)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSC-SSCGGGSSEE
T ss_pred HHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCC-CCChHHcCeE
Confidence 7888888 9999999999999999999999999999999999999999998653321111100 0000000111
Q ss_pred EEEeccCCCCCCCeEEEEEEeeccccCccc-HHHHHHHHHHHHHhC----hhHHHHHhhhccccEEEEeeeee-eCCeeE
Q 003164 619 VRNVSVKNKCETNSVIELYFQIEQEKGMEL-TRLKALIDLFDEILE----EPFFNQLRTKEQLGYVVECSPRV-TYRVFG 692 (843)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~l~----s~l~~~LRek~gl~Y~v~~~~~~-~~~~~~ 692 (843)
+ .. .+...++.+.+.|.. +... ..+...+.+++.+|+ +.|+.+||+ +|++|+++++... ..+.+.
T Consensus 273 ~-~~---~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~-~g~~~~~~a~~~~~~~~~~~ 343 (990)
T 3cww_A 273 Y-KI---VPIKDIRNLYVTFPI----PDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKS-KGWVNTLVGGQKAGARGFMF 343 (990)
T ss_dssp E-EE---CCSSSCCEEEEEEEE----CCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHH-TTSCSCEEEEEEEEETTEEE
T ss_pred E-EE---EECCCCcEEEEEEEc----CChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHH-CCCcceeeeccccCCCCccE
Confidence 2 12 123356777778887 5432 334455666666663 458889996 5999999988764 333444
Q ss_pred EEEEEeCCCCCh--hHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCcccccc
Q 003164 693 FCFCIQSSKYNP--IYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEK-DPSLTYESNRFWNQITDKRYMFDQ 768 (843)
Q Consensus 693 ~~~~i~s~~~~~--~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~-~~s~~~~~~~~~~~i~~~~~~~~~ 768 (843)
+.+++... ++ +++++.++.+.+++..+. .++++++|++++......+... .++..+.+..+...+.. ++.+.
T Consensus 344 f~i~~~~~--~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 419 (990)
T 3cww_A 344 FIINVDLT--EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHY--YPLEE 419 (990)
T ss_dssp EEEEEECC--HHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTT--SCGGG
T ss_pred EEEEEEEC--hHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhh--CCHHH
Confidence 55666542 22 367777777777776655 6999999999988777777653 34555555544333322 34444
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHhhccCCCCcceEEEEEecCC
Q 003164 769 SQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCN 810 (843)
Q Consensus 769 ~~~~~~~i~~it~edi~~~a~~~l~~~~~~~~~~~~~v~g~~ 810 (843)
.....+.+.++|+++|++++++ +.++ ...++++|+.
T Consensus 420 ~~~~~~~i~~~t~~~i~~~~~~-l~~~-----~~~~~~~~p~ 455 (990)
T 3cww_A 420 VLTAEYLLEEFRPDLIEMVLDK-LRPE-----NVRVAIVSKS 455 (990)
T ss_dssp TTTTTTCCCCCCHHHHHHHHTT-CSGG-----GCEEEEECGG
T ss_pred HhccchhhhcCCHHHHHHHHHh-cCHh-----HEEEEEEcCC
Confidence 4445567899999999999986 5553 3466777763
No 32
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.91 E-value=4.6e-23 Score=252.93 Aligned_cols=380 Identities=11% Similarity=0.058 Sum_probs=262.3
Q ss_pred EecCCCeEEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHH----hHHh---hhcccEeEEEEe
Q 003164 397 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQA---SVAKLETSVSIF 469 (843)
Q Consensus 397 ~~~~ng~~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----~~~~---~~~g~~~~~~~~ 469 (843)
..+.||++|++.+++. .+ ..+.+-+.. ++....|+++++.+++..+...+ .+.. ...|..++....
T Consensus 41 ~~l~nGl~v~~~~~~~--~~-~~~~vg~~~----e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~ 113 (995)
T 2fge_A 41 KHKKTGCEVMSVSNED--EN-KVFGVVFRT----PPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTY 113 (995)
T ss_dssp EETTTCCEEEEEECSC--SS-EEEEEEEEC----CCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEEC
T ss_pred EECCCCCEEEEEEcCC--Cc-cEEEEEeCC----CCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeEC
Confidence 5689999999999875 33 344443333 23445789999999875432110 0111 223555566666
Q ss_pred cceeEEEEccc-CCCHHHHHHHHHHHHhcCCC--CHHHHHHH---------------HHHHHHHHhcCcCChhhHHHHHH
Q 003164 470 SDKLELKVYGF-NDKLPVLLSKILAIAKSFLP--SDDRFKVI---------------KEDVVRTLKNTNMKPLSHSSYLR 531 (843)
Q Consensus 470 ~~~~~~~~~g~-s~~~~~~l~ll~~~l~~p~~--~~~~~~~~---------------k~~~~~~l~~~~~~p~~~~~~~~ 531 (843)
.+.+.+.+... .++++.+++++.+.+.+|.| +++.|+++ |..+.++++...++|...+.+.+
T Consensus 114 ~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~ 193 (995)
T 2fge_A 114 PDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIA 193 (995)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHH
Confidence 67777776654 45899999999999999999 99999999 88999999988788999999988
Q ss_pred HHhhcc-CCC--CHHHHHHHhccCCHHHHHHHHHHHHhhhceeeeeecCCCHHHHHHHHHHHHhhcC--CCCCCcccccc
Q 003164 532 LQVLCQ-SFY--DVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFS--VQPLPIEMRHQ 606 (843)
Q Consensus 532 ~~~l~~-~~~--~~~~~~~~l~~it~edl~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~~~~~~~l~--~~~~~~~~~~~ 606 (843)
...+++ ++| ...|..+.|.+++++++++||+++|+|+|+.++|+||+|.+++.++++++++.++ ..+.+. ..+.
T Consensus 194 ~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~-~~~~ 272 (995)
T 2fge_A 194 QQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSS-KIKF 272 (995)
T ss_dssp HHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHS-CCCC
T ss_pred HHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCc-ccCC
Confidence 888875 444 4567889999999999999999999999999999999999999999999999887 321100 0010
Q ss_pred ceeeecCCCCeEEEEecc--CCCCCCCeEEEEEEeeccccCcc--cHHHHHHHHHHHHHh----ChhHHHHHhhhccccE
Q 003164 607 ECVICLPSGANLVRNVSV--KNKCETNSVIELYFQIEQEKGME--LTRLKALIDLFDEIL----EEPFFNQLRTKEQLGY 678 (843)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~l----~s~l~~~LRek~gl~Y 678 (843)
... .+........+.. ..+...++.+.+.|.. +.. +..+..++.+|+.+| +|+|+.+||++ |++|
T Consensus 273 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~-gl~~ 345 (995)
T 2fge_A 273 QKL--FSEPVRLVEKYPAGRDGDLKKKHMLCVNWLL----SEKPLDLQTQLALGFLDHLMLGTPASPLRKILLES-GLGE 345 (995)
T ss_dssp CCC--CSSCEEEEEEEECCSSSCGGGCEEEEEEEEC----CSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHT-TSCS
T ss_pred CCC--CCCCceEEEecccCCCCCccCccEEEEEEEc----CCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhc-CCCc
Confidence 001 1111111111211 1233468888888887 553 467888888888876 68999999986 9999
Q ss_pred EEEee-eeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCC--CChHH--HH
Q 003164 679 VVECS-PRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD--PSLTY--ES 752 (843)
Q Consensus 679 ~v~~~-~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~--~s~~~--~~ 752 (843)
+++++ +......+.+.+.+.. ++++.+++.+..+.+++.++. ++++++||+++|..+..++.... +++.+ .+
T Consensus 346 ~~~~~~~~~~~~~~~f~i~~~~--~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~ 423 (995)
T 2fge_A 346 ALVSSGLSDELLQPQFGIGLKG--VSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLM 423 (995)
T ss_dssp EECSCEEECSSSSCEEEEEEEE--ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHH
T ss_pred ceeeccccccccCeEEEEEEEe--CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHH
Confidence 99876 5433333444444332 257778888888888787765 69999999999999998887533 23332 22
Q ss_pred HHHHHHHhcCcccccccHHHHHHHhcCCH----H----HHHHHHHHhhcc
Q 003164 753 NRFWNQITDKRYMFDQSQKEAEDLKSIKK----N----DVISWYKTYLQQ 794 (843)
Q Consensus 753 ~~~~~~i~~~~~~~~~~~~~~~~i~~it~----e----di~~~a~~~l~~ 794 (843)
..+....+.++ +.....++.+.++++++ + +|++++++||.+
T Consensus 424 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~ 472 (995)
T 2fge_A 424 LQSISKWIYDM-DPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILN 472 (995)
T ss_dssp HHHHHHHTTTS-CSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCC-ChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcC
Confidence 33322333222 22233333455666556 8 899999999964
No 33
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.89 E-value=1.1e-22 Score=219.32 Aligned_cols=339 Identities=9% Similarity=0.036 Sum_probs=240.0
Q ss_pred EEEEecCCccCCcceeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHH-----HHhHHhhhcccEeEEEEecceeEEEEc
Q 003164 404 RFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSIFSDKLELKVY 478 (843)
Q Consensus 404 ~v~~~~~~~~~~p~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~ 478 (843)
+|+..... .|.+.+.+.+..|...+ ...++++++.+++..+.. +........|.+++...+.+.+.+.++
T Consensus 2 ~v~~~~~~---~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~ 76 (352)
T 3cx5_B 2 TVSARDAP---TKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKAT 76 (352)
T ss_dssp EEEEECCS---CSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEE
T ss_pred EEEEeeCC---CceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEE
Confidence 55554322 46566666665444332 357889999998754321 111222345788888888999999999
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHhcCcCChhhHHHHHHHHhhccCCCCHHHHHHHhccCCHHHH
Q 003164 479 GFNDKLPVLLSKILAIAKSFLPSDDRFK-VIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADL 557 (843)
Q Consensus 479 g~s~~~~~~l~ll~~~l~~p~~~~~~~~-~~k~~~~~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~l~~it~edl 557 (843)
+++++++.+++++.+.+.+|.|++++|+ ++|+.++++++...++|...+.+.+...++++++......+.+++++.+++
T Consensus 77 ~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l 156 (352)
T 3cx5_B 77 FLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDI 156 (352)
T ss_dssp EEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHH
T ss_pred echhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHH
Confidence 9999999999999999999999999998 999999999998778999988888888777655532223688999999999
Q ss_pred HHHHHHHHhhhceeeeeecCCCHHHHHHHH-HHHHhhcCCCCCCccccccceeeecCCCCeEEEEeccCCCCCCCeEEEE
Q 003164 558 MAFIPELRSQLYIEGLCHGNLSQEEAIHIS-NIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIEL 636 (843)
Q Consensus 558 ~~~~~~~~~~~~~~~~i~Gdi~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (843)
++||+++|.+.|++++|+| ++.+++.+++ +++++.++.++.+.. .. ..... .+.... ++. ..++.+.+
T Consensus 157 ~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~-~~--~~~~~-~~~~~~--~~~----~~~~~~~~ 225 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVS-KS--EPKFF-LGEENR--VRF----IGDSVAAI 225 (352)
T ss_dssp HHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCC-CS--CCCCC-CSCEEE--EEC----SSSEEEEE
T ss_pred HHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCC-CC--CCCCc-cCCeEE--Eec----CCCceEEE
Confidence 9999999999999999999 9999999999 789988875432211 00 00001 122222 221 24444433
Q ss_pred EEeeccccCcccHHHHHHHHHHHHHhChhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChhHHHHHHHHHHH
Q 003164 637 YFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFIS 716 (843)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~ll~~~l~s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~~~~~~i~~~~~ 716 (843)
.+ +.+.++.+++.+|+.+|++ +||+++|++ ++++.....+.+.+.+++++. +++++.+++.++++
T Consensus 226 ~~-------~~~~~~~~~l~vl~~iLg~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~ 290 (352)
T 3cx5_B 226 GI-------PVNKASLAQYEVLANYLTS----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVA 290 (352)
T ss_dssp EE-------EECTTTHHHHHHHHHHHHS----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHH
T ss_pred ec-------CCCChhHHHHHHHHHHhCc----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHH
Confidence 32 2244678889999999977 889999987 555555455555556676652 47777777665432
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 003164 717 GLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWS 796 (843)
Q Consensus 717 ~~~~~l~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~edi~~~a~~~l~~~~ 796 (843)
+++|++||+++|+.+++++....++. +...+. .|++||. .+ | .
T Consensus 291 ------~~~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~------~i~~vt~-------~~-~-~-- 333 (352)
T 3cx5_B 291 ------DLKKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL------NFDAVKD-------FK-L-G-- 333 (352)
T ss_dssp ------HHHSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS------CGGGCCE-------EC-C-C--
T ss_pred ------hcCCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce------eeeeeeH-------hh-c-C--
Confidence 46899999999999999988666542 112223 4888992 22 4 2
Q ss_pred CCcceEEEEEecCCCCcc
Q 003164 797 PKCRRLAVRVWGCNTNIK 814 (843)
Q Consensus 797 ~~~~~~~~~v~g~~~~~~ 814 (843)
+++++++|+.+.++
T Consensus 334 ----~~~~~~~G~~~~~~ 347 (352)
T 3cx5_B 334 ----KFNYVAVGDVSNLP 347 (352)
T ss_dssp ----SCEEEEEESGGGSC
T ss_pred ----CceEEEEccccccC
Confidence 69999999866444
No 34
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.78 E-value=6.5e-19 Score=189.65 Aligned_cols=220 Identities=9% Similarity=0.012 Sum_probs=156.7
Q ss_pred ChhhhcchhccCCcchHH-HHHHhhHhHhhhhcCChHHHHHHHHHhhCCCCCCCCccccCcHhhhhhhhhcCccHHHHHH
Q 003164 1 MRFSQFFISPLMKVEAME-REVLAVDSEFNQALQNDACRLQQLQCHTSQLGHAFNKFFWGNKKSLIGAMEKGINLQEQIM 79 (843)
Q Consensus 1 ~~~~~~~~~p~~~~~~i~-~Er~vV~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~~~l~ 79 (843)
+++++++.+|.|++++++ +||++|.+|+++..++|..++.+.+...+|+ |||+++.+ .++|.+ ++.++|+
T Consensus 87 ~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~------it~~~l~ 157 (352)
T 3cx5_B 87 NALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVER------VSLQDIK 157 (352)
T ss_dssp HHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSC------CCHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhcc------CCHHHHH
Confidence 468999999999999998 9999999999998899999888877777786 99998875 688998 8999999
Q ss_pred HHHHhccCccccEEEEecCCCHHHHHHHH-HHhcccccCCCCCCCCCCcccccccccceEEEEEccCceEEEEEEecCCc
Q 003164 80 KLYMNYYQGGLMKLVVIGGEPLDTLQSWV-VELFANVRKGPQIKPQFTVEGTIWKACKLFRLEAVKDVHILDLTWTLPCL 158 (843)
Q Consensus 80 ~fy~~~Y~p~nm~lvi~Gd~~~~~~~~~i-~~~F~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~l~~~~p~~ 158 (843)
+||++||+|+||+|+|+| +|++++.+++ +++|++|+.+..+.+... +.++ . +....+ +...+..+.+.++...
T Consensus 158 ~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~~-~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~- 231 (352)
T 3cx5_B 158 DFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVSKSE-PKFF-L-GEENRV-RFIGDSVAAIGIPVNK- 231 (352)
T ss_dssp HHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCCCSC-CCCC-C-SCEEEE-ECSSSEEEEEEEEECT-
T ss_pred HHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCCCCC-CCCc-c-CCeEEE-ecCCCceEEEecCCCC-
Confidence 999999999999999999 9999999999 899999986543222111 1122 1 222223 2234445555443322
Q ss_pred hhhhhcCcHHHHHHhhcCCCCCcHHHHHhh-cCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHH
Q 003164 159 HQEYLKKSEDYLAHLLGHEGRGSLHSFLKG-RGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQY 237 (843)
Q Consensus 159 ~~~~~~~~~~~l~~ll~~~~~~sL~~~L~~-~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~ 237 (843)
+ +..++.+++.+|++ +||+ +|++ ++++... ....+.|.+.+... +.+++.+.+..+
T Consensus 232 -~--~~~~l~vl~~iLg~--------~lre~~gl~--~~~~~~~-----~~~~g~~~i~~~~~-----~~~~~~~~i~~~ 288 (352)
T 3cx5_B 232 -A--SLAQYEVLANYLTS--------ALSELSGLI--SSAKLDK-----FTDGGLFTLFVRDQ-----DSAVVSSNIKKI 288 (352)
T ss_dssp -T--THHHHHHHHHHHHS--------TTSTTGGGC--SEEEEEE-----ETTEEEEEEEEEES-----CHHHHHHHHHHH
T ss_pred -h--hHHHHHHHHHHhCc--------chhcccCce--EEEeecC-----cCcceeEEEEEEeC-----CHHHHHHHHHHH
Confidence 1 33688999999985 4564 6776 4443321 12457888888764 233444444444
Q ss_pred HHHHHhcCCchhHHHHHHHhhhccc
Q 003164 238 IKLLRQVSPQKWIFKELQDIGNMEF 262 (843)
Q Consensus 238 l~~l~~~~~~~~~~~~~~~~~~~~~ 262 (843)
+ +.++++++++++|......+
T Consensus 289 l----~~~~t~~el~~ak~~~~~~~ 309 (352)
T 3cx5_B 289 V----ADLKKGKDLSPAINYTKLKN 309 (352)
T ss_dssp H----HHHHSCEECGGGHHHHHHHH
T ss_pred H----HhcCCHHHHHHHHHHHHHHH
Confidence 4 34688888888776554443
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.65 E-value=1.2e-15 Score=148.98 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=127.3
Q ss_pred CCeEEEEEEeeccccCcccHHHHHHHHHHHHHhC----hhHHHHHhhhccccEEEEeeeeeeCCeeEEEEEEeCCCCChh
Q 003164 630 TNSVIELYFQIEQEKGMELTRLKALIDLFDEILE----EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPI 705 (843)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~----s~l~~~LRek~gl~Y~v~~~~~~~~~~~~~~~~i~s~~~~~~ 705 (843)
.++.+.+.|.+ +..+.++.+++.+|+.+|+ |+||++|||+ |++|+++++.....+.+.+.+++.+ +|+
T Consensus 23 ~~~~v~~~~~~----~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~~---~~~ 94 (197)
T 3ih6_A 23 GTPLVAAMYHL----PAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQL---QPG 94 (197)
T ss_dssp CSCEEEEEEEC----CCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEEC---CTT
T ss_pred CCceEEEEEec----CCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhc-CceEEEEeccccccCCeEEEEEEEE---CCC
Confidence 67788888887 6555667778888887764 7999999996 9999999987654444555566554 344
Q ss_pred -HHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCcccccccHHHHHHHhcCCHHH
Q 003164 706 -YLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKND 783 (843)
Q Consensus 706 -~~~~~i~~~~~~~~~~l-~~ite~el~~~k~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~it~ed 783 (843)
.+++.+..+.+++.++. +++|++||+++|+.+++++....++....+..++...+.++ .+...++.+.|++||++|
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~--~~~~~~~~~~i~~vT~~d 172 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD--WRLFFLQRDRVREAKLDD 172 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC--TTHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCHHH
Confidence 35566666666665544 58999999999999999998888888888888777666543 455678899999999999
Q ss_pred HHHHHHHhhccCCCCcceEEEEEecCC
Q 003164 784 VISWYKTYLQQWSPKCRRLAVRVWGCN 810 (843)
Q Consensus 784 i~~~a~~~l~~~~~~~~~~~~~v~g~~ 810 (843)
|+++|++||.++ ...++++|+.
T Consensus 173 v~~~a~~~l~~~-----~~~~~~~~P~ 194 (197)
T 3ih6_A 173 VQRAAVAYLVRS-----NRTEGRYIPT 194 (197)
T ss_dssp HHHHHHHHSSGG-----GCEEEEECC-
T ss_pred HHHHHHHhCCcc-----CeEEEEEeCC
Confidence 999999999874 4566666653
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.37 E-value=7.7e-13 Score=128.88 Aligned_cols=172 Identities=8% Similarity=-0.037 Sum_probs=133.1
Q ss_pred cCceEEEEEEecCCchhhhhcCcHHHHHHhhcCCCCCcHHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhh
Q 003164 144 KDVHILDLTWTLPCLHQEYLKKSEDYLAHLLGHEGRGSLHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSG 223 (843)
Q Consensus 144 ~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~~sL~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~ 223 (843)
..+..+.+.|+.|...+ .+..++.+++.+|+++..+.|+..||++|++++++++.... ...+.|.|.+.+.+.
T Consensus 22 ~~~~~v~~~~~~~~~~~-~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~-----~~~g~~~i~~~~~~~- 94 (197)
T 3ih6_A 22 GGTPLVAAMYHLPAAGS-PDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQ-----LDPGLAMFGAQLQPG- 94 (197)
T ss_dssp CCSCEEEEEEECCCTTS-TTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETT-----SSSCEEEEEEECCTT-
T ss_pred CCCceEEEEEecCCCCC-CcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccc-----cCCeEEEEEEEECCC-
Confidence 46789999999986543 34568999999999887788999999999999998865431 356889998887652
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCccceeecCcccccCCHHH
Q 003164 224 LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAEHVIYGEYMYEVWDEEM 303 (843)
Q Consensus 224 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 303 (843)
.+.+++++.+.++++++++.|+++++++++|+.....+... .+++...+..++......+++........+..+|+++
T Consensus 95 -~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~-~~~~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~d 172 (197)
T 3ih6_A 95 -MDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQT-YADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDD 172 (197)
T ss_dssp -SCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHH-HTSHHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHH
Confidence 25889999999999999999999999999998876665433 2345667777766554333444334445678999999
Q ss_pred HHHHH-hccCcCceEEEEEeCC
Q 003164 304 IKHLL-GFFMPENMRIDVVSKS 324 (843)
Q Consensus 304 i~~~l-~~l~~~~~~~~~~~~~ 324 (843)
|++++ ++|.+++..+++..|.
T Consensus 173 v~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 173 VQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHHHHhCCccCeEEEEEeCC
Confidence 99999 6889999888888774
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=36.29 E-value=65 Score=20.31 Aligned_cols=25 Identities=8% Similarity=0.026 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHH
Q 003164 232 GFVYQYIKLLRQVSPQKWIFKELQD 256 (843)
Q Consensus 232 ~~l~~~l~~l~~~~~~~~~~~~~~~ 256 (843)
.++-.++..++..||+.+++..+..
T Consensus 3 aalkselqalkkegfspeelaales 27 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALES 27 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4566788999999999987765443
No 38
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=30.17 E-value=1.1e+02 Score=26.55 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=39.6
Q ss_pred HHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhh
Q 003164 182 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 258 (843)
Q Consensus 182 L~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 258 (843)
+...|.++||+........ +. .+.+.+|+.|.+-.+++...+....+.+. .++++++++.+....
T Consensus 66 ~v~~Le~~GlV~R~~~~~D-------rR----~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~ee~~~l~~~L 130 (151)
T 4aik_A 66 TLDQLEEKGLITRHTSAND-------RR----AKRIKLTEQSSPIIEQVDGVISSTRKEIL-GGISSDEIAVLSGLI 130 (151)
T ss_dssp HHHHHHHTTSEEEEECSSC-------TT----CEEEEECGGGHHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEeecCCCC-------Cc----chhhhcCHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 4567788999875443211 11 12466888887666666555555555553 589988777655443
No 39
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=21.16 E-value=2.2e+02 Score=23.75 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=39.3
Q ss_pred HHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhh
Q 003164 183 HSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 258 (843)
Q Consensus 183 ~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 258 (843)
...|.++|++........ +. ...+.+|+.|..-.+++........+.+. .++++++++.+....
T Consensus 68 l~~Le~~Gli~r~~~~~D-------~R----~~~~~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~l 131 (139)
T 3eco_A 68 LRNLERKKLIYRYVDAQD-------TR----RKNIGLTTSGIKLVEAFTSIFDEMEQTLV-SQLSEEENEQMKANL 131 (139)
T ss_dssp HHHHHHTTSEEEEECCC---------C----CEEEEECHHHHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HHHHHHCCCEeecCCCCC-------CC----eeeeEECHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Confidence 456778999875432211 11 12466888887666666666555555554 488887777665544
No 40
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=20.69 E-value=1.2e+02 Score=25.71 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=36.4
Q ss_pred HHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhh
Q 003164 182 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 258 (843)
Q Consensus 182 L~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 258 (843)
+...|.++||+........ +. ...+.+|++|.+-.+++........+.+ ++++++++.+....
T Consensus 70 ~l~~L~~~Glv~r~~~~~D-------~R----~~~~~LT~~G~~~~~~~~~~~~~~~~~~---~l~~~e~~~l~~~L 132 (140)
T 3hsr_A 70 LLKKLEKKDYVVRTREEKD-------ER----NLQISLTEQGKAIKSPLAEISVKVFNEF---NISEREASDIINNL 132 (140)
T ss_dssp HHHHHHHTTSEEEEC------------------CEEEECHHHHHTHHHHHHHHHHHHHTS---CCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEecCCCCC-------cc----eeeeeEChHHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 3457788999875432211 11 1235688888766666555544444443 89988877765544
No 41
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=20.00 E-value=2.2e+02 Score=24.69 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHhhcCcccccccccCCCCCccCCceeEEEEEEEcCHhhHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhh
Q 003164 182 LHSFLKGRGWATSISAGVGDEGMHRSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 258 (843)
Q Consensus 182 L~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~f~i~~~l~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 258 (843)
+...|.++||+........ +. ...+.+|+.|..-.+++...+......+. .++++++++.+....
T Consensus 80 ~l~~Le~~Glv~r~~~~~D-------rR----~~~l~LT~~G~~~~~~~~~~~~~~~~~~~-~~l~~~e~~~l~~~L 144 (162)
T 3k0l_A 80 ILQDLLANGWIEKAPDPTH-------GR----RILVTVTPSGLDKLNQCNQVVQQLEAQML-QGVDINLAFLIRNNL 144 (162)
T ss_dssp HHHHHHHTTSEEEEECCSS-------SC----CEEEEECHHHHHHHHHHHHHHHHHHHHHT-TTSCHHHHHHHHHHH
T ss_pred HHHHHHHCcCeEecCCCCc-------CC----eeEeEECHhHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Confidence 3456778999875433211 11 12366888887666666666555555554 588887777655544
Done!