BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003165
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/845 (62%), Positives = 659/845 (77%), Gaps = 5/845 (0%)
Query: 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT + +R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 ADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALR 120
DE ERGITIKST ISLY EM+D+ +K K + +GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR 180
+TDGALVVVD IEGVCVQTETVLRQALGERI+PV+ +NK+DR LELQV E+ YQTF+R
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 180
Query: 181 VVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240
VE+ NVI++TY D +LGDVQVYP +GTVAF +GLHGWAFT+ FA YA KFGVD++KM
Sbjct: 181 TVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240
Query: 241 MERLWGENFFDPATKKWTTKNTGS--ATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPML 298
M+RLWG++FF+P TKKWT K+T + +R F F +PI ++ MN +KD++ +L
Sbjct: 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLL 300
Query: 299 QKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGP 358
+KL + +K +EKDL GKAL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEGP
Sbjct: 301 EKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGP 360
Query: 359 LDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 418
DD AI+NCDP LMLYVSKM+P SDKGRF+AFGRVF+G V +G KVRI GPNYVP
Sbjct: 361 ADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVP 420
Query: 419 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478
G+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQF+ K TLT + AH +
Sbjct: 421 GKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNM 478
Query: 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHL 538
+ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ + ESGEHIVAG GELHL
Sbjct: 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHL 538
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL 598
EICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR+Y++A P++E +
Sbjct: 539 EICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEV 597
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
+ AI++G I PRDD KAR++I+++++GWD A+KIWCFGP+ GPN+V+D K VQYL+
Sbjct: 598 SLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLH 657
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
EIKDSVVA FQWA+KEG + E MR + + DV LHADAIHRGGGQ+IPT RR YA
Sbjct: 658 EIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
L A P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL+ +KAYLPV ES
Sbjct: 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNES 777
Query: 779 FGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSE 838
FGF+G LR AT GQAFPQ VFDHW + SDPL+P ++A ++V RKR G+KE++ E
Sbjct: 778 FGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQE 837
Query: 839 FEDKL 843
+ DKL
Sbjct: 838 YYDKL 842
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/845 (62%), Positives = 658/845 (77%), Gaps = 5/845 (0%)
Query: 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT + +R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 ADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALR 120
DE ERGITIKST ISLY EM+D+ +K K + +GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR 180
+TDGALVVVD IEGVCVQTETVLRQALGERI+PV+ +NK+DR LELQV E+ YQTF+R
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 180
Query: 181 VVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240
VE+ NVI++TY D +LGDVQVYP +GTVAF +GLHGWAFT+ FA YA KFGVD++KM
Sbjct: 181 TVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240
Query: 241 MERLWGENFFDPATKKWTTKNTGS--ATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPML 298
M+RLWG++FF+P TKKWT K+T + +R F F +PI ++ MN +KD++ +L
Sbjct: 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLL 300
Query: 299 QKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGP 358
+KL + +K +EKDL GKAL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEGP
Sbjct: 301 EKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGP 360
Query: 359 LDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 418
DD AI+NCDP LMLYVSKM+P SDKGRF+AFGRVF+G V +G KVRI GPNYVP
Sbjct: 361 ADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVP 420
Query: 419 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478
G+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQF+ K TLT + AH +
Sbjct: 421 GKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNM 478
Query: 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHL 538
+ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ + ESGEHIVAG GELHL
Sbjct: 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHL 538
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGL 598
EICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR+Y++A P++E +
Sbjct: 539 EICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEV 597
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
+ AI++G I PRDD KAR++I+++++GWD A+KIWCFGP+ GPN+V+D K VQYL+
Sbjct: 598 SLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLH 657
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
EIKDSVVA FQWA+KEG + E MR + + DV LHADAI RGGGQ+IPT RR YA
Sbjct: 658 EIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQIIPTMRRATYAGF 717
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
L A P++ EPV++VEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL+ +KAYLPV ES
Sbjct: 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNES 777
Query: 779 FGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSE 838
FGF+G LR AT GQAFPQ VFDHW + SDPL+P ++A ++V RKR G+KE++ E
Sbjct: 778 FGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQE 837
Query: 839 FEDKL 843
+ DKL
Sbjct: 838 YYDKL 842
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 198/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 269 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 318
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 319 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 374
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 375 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 434
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 435 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 492
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 493 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 530
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ AE + + F++ + +A+ +G
Sbjct: 531 ----------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG---------------- 564
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 565 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 619
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 620 FGYATDLRSKTQGRGSFVMFFDHY 643
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 42/150 (28%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
+RN+ + AH+D GK+T T+ ++ G IA
Sbjct: 6 RLRNIGIAAHIDAGKTTTTERILYYTGRIA------------------------------ 35
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+T K ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 36 ---VTTCFWKDHR---------INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEP 83
Query: 138 QTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 84 QSETVWRQAEKYKVPRIAFANKMDKTGADL 113
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 197/444 (44%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ DP V T E+G+ I++G GELHLEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 194/444 (43%), Gaps = 79/444 (17%)
Query: 369 NCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKS 428
+ DPNGPL K++ GR F RV+SG +++G V N G K+
Sbjct: 302 HPDPNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----R 351
Query: 429 VQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSV-SP 487
V R + +E VE++ G+ A+VGL + IT + TL E DA + V P
Sbjct: 352 VARLLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEP 407
Query: 488 VVRVAVQCKVASDLPKLVEGLKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQ 546
V+ VA++ K +D KL + L RLA+ P V T E+G I++G GEL LEI + L+
Sbjct: 408 VIDVAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLK 467
Query: 547 DDFMGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--L 598
+F A + K P V++RET+ + K R + H ++ +E P G
Sbjct: 468 REFKVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEF 525
Query: 599 AEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLN 658
AI G I P++ A K + E GP P VVD+
Sbjct: 526 VNAIVGGVI-PKEYIPAVQKGIEEAM-----------QSGPLIGFP--VVDI-------- 563
Query: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 ----------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG---------------- 597
Query: 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E
Sbjct: 598 ---DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEM 652
Query: 779 FGFSGTLRAATSGQAFPQCVFDHW 802
FG++ LR+ T G+ FDH+
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 18/152 (11%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGI 75
+RN+ + AH+D GK+T T+ ++ G I + EV D E ERGITI +
Sbjct: 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVT 70
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 71 TCFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 115 EPQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAV 61
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
++Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RMFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 136 CVQTETVLRQALGERIRPVLTVNKMD 161
QT +A+ + + + +NK+D
Sbjct: 111 EAQTVANFWKAVEQDLVIIPVINKID 136
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 31/207 (14%)
Query: 371 DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM--GPNYVPGE------KK 422
DP PL + +G AF R+F G+V G K+ +M G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKM 246
Query: 423 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMK 482
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGE----HIVAGAGELHL 538
P+V + + +L + L++ A +D +V E S V G LH+
Sbjct: 292 -PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHM 350
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFR 565
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKXQAV 61
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RXFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 136 CVQTETVLRQALGERIRPVLTVNKMD 161
QT +A+ + + + +NK+D
Sbjct: 111 EAQTVANFWKAVEQDLVIIPVINKID 136
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 80/207 (38%), Gaps = 31/207 (14%)
Query: 371 DPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI--MGPNYVPGE------KK 422
DP PL + +G AF R+F G+V G K+ + G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKX 246
Query: 423 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMK 482
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEES---GEHIVAG-AGELHL 538
P V + + +L + L++ A +D +V E S G G G LH
Sbjct: 292 -PAKPXVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHX 350
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFR 565
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 209/494 (42%), Gaps = 93/494 (18%)
Query: 331 ALLEMMIFHLPSPSTAQKYRVENLYEGPLDD-QYANAIRNCDPNGPLMLYVSKMIPASDK 389
A+L+ +I +LPSP G LDD + A R+ + P K+
Sbjct: 277 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 330
Query: 390 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 449
G F RV+SG V++G V N V ++ R V K+E +++V G
Sbjct: 331 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 380
Query: 450 NTVAMVGLDQFITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 507
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 381 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 434
Query: 508 LKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566
L RLAK DP V T EES + I+AG GELHL+I + ++ +F A + K P V++RE
Sbjct: 435 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 492
Query: 567 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS 621
T+ +K S ++ + ++ PLE P +P
Sbjct: 493 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 531
Query: 622 EEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681
KG +++N+IK V+ G + + + E+
Sbjct: 532 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 561
Query: 682 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPVYMVEI 734
G + V D + LH + H A + + AKP LLEP+ VE+
Sbjct: 562 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 621
Query: 735 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794
+ PE+ G + L+++RG + + Q I A +P+ E FG++ LR+ T G+A
Sbjct: 622 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 679
Query: 795 PQCVFDHWDMMSSD 808
F +D S+
Sbjct: 680 YTMEFLKYDEAPSN 693
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D E ERGITI S +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
++ K Y+ R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 71 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 121
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA ++ + VNKMDR
Sbjct: 122 QSETVWRQANKYKVPRIAFVNKMDR 146
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 209/494 (42%), Gaps = 93/494 (18%)
Query: 331 ALLEMMIFHLPSPSTAQKYRVENLYEGPLDD-QYANAIRNCDPNGPLMLYVSKMIPASDK 389
A+L+ +I +LPSP G LDD + A R+ + P K+
Sbjct: 276 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 329
Query: 390 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 449
G F RV+SG V++G V N V ++ R V K+E +++V G
Sbjct: 330 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 379
Query: 450 NTVAMVGLDQFITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 507
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 380 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 433
Query: 508 LKRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566
L RLAK DP V T EES + I+AG GELHL+I + ++ +F A + K P V++RE
Sbjct: 434 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 491
Query: 567 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILS 621
T+ +K S ++ + ++ PLE P +P
Sbjct: 492 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 530
Query: 622 EEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681
KG +++N+IK V+ G + + + E+
Sbjct: 531 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 560
Query: 682 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPVYMVEI 734
G + V D + LH + H A + + AKP LLEP+ VE+
Sbjct: 561 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 620
Query: 735 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794
+ PE+ G + L+++RG + + Q I A +P+ E FG++ LR+ T G+A
Sbjct: 621 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 678
Query: 795 PQCVFDHWDMMSSD 808
F +D S+
Sbjct: 679 YTMEFLKYDEAPSN 692
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D E ERGITI S +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
++ K Y+ R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 70 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 120
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA ++ + VNKMDR
Sbjct: 121 QSETVWRQANKYKVPRIAFVNKMDR 145
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA 110
Query: 138 QTETVLRQALGERIRPVLTVNKMD 161
QT A+ + V +NK+D
Sbjct: 111 QTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA 110
Query: 138 QTETVLRQALGERIRPVLTVNKMD 161
QT A+ + V +NK+D
Sbjct: 111 QTLANCYTAMEMDLEVVPVLNKID 134
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 219/493 (44%), Gaps = 84/493 (17%)
Query: 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391
+L+ +I +LP+P+ + + DD+ R+ D N P K+ G
Sbjct: 281 VLDAVIDYLPAPT-----EIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGT 335
Query: 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 451
F RV+SG +S+G V N V G+K+ V R V ++E +++V G+
Sbjct: 336 L-TFARVYSGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEIKEVRAGDI 385
Query: 452 VAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511
A++G+ T + + EK + + M F PV+ VAV+ K +D K+ L +L
Sbjct: 386 AALIGMKDVTTGDTLCSIEKPI---ILERMDFP-EPVISVAVEPKTKADQEKMGIALGKL 441
Query: 512 AKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 570
A+ DP V T EESG+ I++G GELHL+I + ++ +F G E P V++RET+ +
Sbjct: 442 AQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGKPQVAYRETITK 499
Query: 571 -------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEE 623
K R + H + A ++E G I +E
Sbjct: 500 DNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDE-------KGNI-------------TEG 539
Query: 624 FGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGF-----QWASKEGALA 678
++ ++ + P+ P + KG++ ++K+ VVAG+ + +G+
Sbjct: 540 LVFENEVVGGVV---PKEYIPA----IQKGIE--EQMKNGVVAGYPLIGLKATVFDGSYH 590
Query: 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPE 738
+ + + F++ + +GGG+V LEP+ VE+ PE
Sbjct: 591 DVDSNEMAFKIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTPE 631
Query: 739 QALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798
+G + LN++RG + + M+ + I+A +P+ E FG++ +R+ + G+A
Sbjct: 632 DYMGDVMGDLNRRRG-LIQGMEDTVSGKV-IRAEVPLGEMFGYATDVRSMSQGRASYSME 689
Query: 799 FDHWDMMSSDPLE 811
F + S+ +E
Sbjct: 690 FSKYAEAPSNIVE 702
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ + AHVD GK+T T+ ++ G+ + EV TD E ERGITI S ++
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 78 YYEMTDDALKSYKGERNG-NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
++ KG R + Y +N+ID+PGHVDF+ EV +LR+ DGA+VV GV
Sbjct: 74 FW----------KGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE 123
Query: 137 VQTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA + ++ VNKMDR
Sbjct: 124 PQSETVWRQANKYGVPRIVYVNKMDR 149
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 389 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 732
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 389 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 732
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 389 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 732
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 117/490 (23%), Positives = 201/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPSTAQK---YRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N E I D + K++
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASNPEE--------EVIAKADDSAEFAALAFKVMTDPY 321
Query: 389 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
G+ F RV+SG +++G V+ N G+++ V R + ++ ++ V
Sbjct: 322 VGKL-TFFRVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMV-VCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP T EE+G+ I+ G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKARSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYM-----V 732
+ + ++ D H D+ A ++ + L + +PV + V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++ +LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 22/153 (14%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRAD----EAERGITIKSTG 74
I N+ V+AHVD GK+TLT+SL+ +G I + G V TR D E +RGITI++
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGI 59
Query: 75 ISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
S +E T +N+ID+PGH+DF +EV +L + DGA++++ +G
Sbjct: 60 TSFQWENTK----------------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG 103
Query: 135 VCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
V QT + I + +NK+D+ ++L
Sbjct: 104 VQAQTRILFHALRKMGIPTIFFINKIDQNGIDL 136
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 28/151 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR--------MTDTRADEAERGITIKS 72
++I+H D GK+TLT+ L+ G I ++AG V+ +D A E ERGI++ +
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAI--QMAGSVKARKAARHATSDWMAMERERGISVTT 90
Query: 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132
+ + Y + ++NL+D+PGH DFS + L D ALVV+D
Sbjct: 91 SVMQFPY----------------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA 134
Query: 133 EGVCVQTETVLRQALGERIRPVLT-VNKMDR 162
+GV QT ++ R PV+T VNKMDR
Sbjct: 135 KGVEAQTRKLM-DVCRMRATPVMTFVNKMDR 164
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+TLT+ L + AG I A +D E +RGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
Y+ +YLINL+D+PGH DF+ + L D AL V+D +
Sbjct: 74 VXQFPYK----------------DYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T L + R P+ T +NK DR
Sbjct: 118 GVEPRT-IKLXEVCRLRHTPIXTFINKXDR 146
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 60/127 (47%), Gaps = 27/127 (21%)
Query: 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS 72
MDFK NI N+ + H+DHGK+TL+ L A A D + +RGITI
Sbjct: 15 MDFK-NI-NLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITI-- 61
Query: 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132
D ++K E Y I L+D+PGH D V +A I D AL+VVD
Sbjct: 62 ----------DIGFSAFKLEN----YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAK 107
Query: 133 EGVCVQT 139
EG QT
Sbjct: 108 EGPKTQT 114
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T ++ + R P+LT +NK+DR
Sbjct: 118 GVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRADEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T ++ + R P+LT +NK+DR
Sbjct: 118 GVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRAD---EAERGITIKSTGI 75
IR ++++ H GK+TLT++L+ G A+E G V T D EA+ T TG+
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTG--AKERRGRVEEGTTTTDYTPEAKLHRTTVRTGV 66
Query: 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ ++G R + L+D+PG+ DF E+ AL D ALV V GV
Sbjct: 67 APLL---------FRGHR------VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV 111
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDR 162
V TE A + ++ V K+D+
Sbjct: 112 QVGTERAWTVAERLGLPRMVVVTKLDK 138
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 487 PVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCTIEESGEHIVAGAGELHLEICLKDL 545
P V VA+ K +D +L E L++L + DP + + EE+GE ++ G GELHL + L
Sbjct: 381 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 440
Query: 546 QDDFMGGAEIIKSDPVVSFRETV 568
QD G E+ S P V +RET+
Sbjct: 441 QDY---GVEVEFSVPKVPYRETI 460
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 721 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG 780
A P LLEP+Y +++ AP++ +G + S L +RG + M++ G L + A +P+ E
Sbjct: 567 AHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRIL-GMEQEGA-LSVVHAEVPLAEVLE 624
Query: 781 FSGTLRAATSGQAFPQCVFDHW 802
+ L T G F H+
Sbjct: 625 YYKALPGLTGGAGAYTLEFSHY 646
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 41/165 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII-------AQEVAGDVR--------MTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I A+E A + + D +E E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+TI T + +Y +ID+PGH DF + D A
Sbjct: 68 RGVTINLTFMRF----------------ETKKYFFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIE-----GVCVQTET----VLRQALGERIRPVLTVNKMD 161
++VV + G+ V+ +T +L + +G + ++ VNKMD
Sbjct: 112 ILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLD-QLIVAVNKMD 155
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I +E + D +E E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + +Y+ +ID+PGH DF + D A
Sbjct: 68 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIEG---VCVQTETVLRQALG-------ERIRPVLTVNKMD 161
++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 112 ILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 155
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 43/166 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRADEAE 65
N+ VI HVDHGKSTL L+ G I +E + D +E E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + +Y+ +ID+PGH DF + D A
Sbjct: 71 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 114
Query: 126 LVVVDCIEG---VCVQTETVLRQALG-------ERIRPVLTVNKMD 161
++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 115 ILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 158
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 40/187 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-------ST 73
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 59
Query: 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
S + + Y G ++ IDSPGH + + A + DGA++V+ E
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE 119
Query: 134 GVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR--------V 181
C + +T + Q +G++ ++ NK++ VD E+A + + + V
Sbjct: 120 -PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKEFIKGTV 171
Query: 182 VENANVI 188
ENA +I
Sbjct: 172 AENAPII 178
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHYAH-----------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 399 QTREHIL---LGRQVGVPYIIVFLNKC 422
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 115 QTREHIL---LGRQVGVPYIIVFLNKC 138
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 115 QTREHIL---LGRQVGVPYIIVFLNKC 138
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 70
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 71 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 114
Query: 137 VQT 139
QT
Sbjct: 115 PQT 117
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 62 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 105
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 106 QTREHIL---LGRQVGVPYIIVFLNKC 129
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 40/187 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 81 MTDDALK-------SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ + Y G ++ ID+PGH + + A + DGA++V+ E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 134 GVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR--------V 181
C + +T + Q +G++ ++ NK++ VD E+A + + + V
Sbjct: 119 -PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKEFIEGTV 170
Query: 182 VENANVI 188
ENA +I
Sbjct: 171 AENAPII 177
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 399 QTREHIL---LGRQVGVPYIIVFLNKC 422
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 40/187 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 81 MTDDALK-------SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ + Y G ++ ID+PGH + + A + DGA++V+ E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE 118
Query: 134 GVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR--------V 181
C + +T + Q +G++ ++ NK++ VD E+A + + + V
Sbjct: 119 -PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKEFIEGTV 170
Query: 182 VENANVI 188
ENA +I
Sbjct: 171 AENAPII 177
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ + HVDHGK+TLT +L TDT ++E RGITIK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 58
Query: 81 MTDDALK-------SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ + Y G ++ ID+PGH + A + DGA++V+ E
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANE 118
Query: 134 GVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR--------V 181
C + +T Q +G++ ++ NK++ VD E+A + + + V
Sbjct: 119 -PCPRPQTREHLXALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKEFIEGTV 170
Query: 182 VENANVI 188
ENA +I
Sbjct: 171 AENAPII 177
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDI---DKAREERARGITINTAHVE 69
Query: 77 LYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D GH D+ + DGA++VV +G
Sbjct: 70 --YET---AKRHY-----------SHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRM 113
Query: 137 VQT--ETVLRQALGERIRPVLTVNKMD 161
QT +L + +G R V+ +NK+D
Sbjct: 114 RQTREHILLARQVGVRY-IVVFMNKVD 139
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPMDV 51
Query: 82 TDDALKSYKGERNGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 139
+ + + + E L L ID+PGH F++ + D A+++VD EG QT
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 140 ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR 180
+ L R V+ NK+DR +G +TFS+
Sbjct: 112 QEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPXDV 51
Query: 82 TDDALKSYKGERNGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 139
+ + + + E L L ID+PGH F++ + D A+++VD EG QT
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 140 ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSR 180
+ L R V+ NK+DR +G +TFS+
Sbjct: 112 QEALNILRXYRTPFVVAANKIDRIHGWRVHEGRPFXETFSK 152
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 31/142 (21%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D L R T A EA GI+ +
Sbjct: 7 VTIMGHVDHGKTTLLDKL---------------RKTQVAAMEA--------GGITQHIGA 43
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
+L S GE+ I +D+PGH FS+ ++TD ++VV +GV QT
Sbjct: 44 FLVSLPS--GEK------ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE 95
Query: 142 VLRQALGERIRPVLTVNKMDRC 163
++ A + VL +NK D+
Sbjct: 96 SIQHAKDAHVPIVLAINKCDKA 117
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D++ ++ E E G + G Y++
Sbjct: 11 VTIMGHVDHGKTTLLDAI-----------------RHSKVTEQEAGGITQHIG---AYQV 50
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
T N+ I +D+PGH F++ ++TD ++VV +GV QT
Sbjct: 51 T------------VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98
Query: 142 VLRQALGERIRPVLTVNKMDR 162
+ A + ++ +NKMD+
Sbjct: 99 AINHAKAANVPIIVAINKMDK 119
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 34/144 (23%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVDHGK+TLT ++ ++A+ G A RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGG-----------AARGITINTSHVEY--- 55
Query: 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT- 139
D + Y +D PGH D+ + DGA++VV +G QT
Sbjct: 56 --DTPTRHYA-----------HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 102
Query: 140 ETVLRQALGERIRPVLTVNKMDRC 163
E +L LG ++ + +++C
Sbjct: 103 EHIL---LGRQVGVPYIIVFLNKC 123
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 60/147 (40%), Gaps = 27/147 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI + +
Sbjct: 5 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 61
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
A + Y D PGH D+ + DG ++VV +G
Sbjct: 62 -----STAARHYAH-----------TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 138 QTETVL---RQALGERIRPVLTVNKMD 161
QT L RQ E + V+ VNK D
Sbjct: 106 QTREHLLLARQIGVEHV--VVYVNKAD 130
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 41/165 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII------------AQEVAGDVR---MTDTRADEAE 65
N+ VI HVD GKST T L+ G I A+ G + + D E E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI D AL ++ + Y + +ID+PGH DF + D A
Sbjct: 69 RGITI------------DIALWKFETPK----YQVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 126 LVVV-----DCIEGVCVQTET----VLRQALGERIRPVLTVNKMD 161
++++ + G+ +T +L LG R + ++ VNKMD
Sbjct: 113 ILIIAGGVGEFEAGISKDGQTREHALLAFTLGVR-QLIVAVNKMD 156
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 27/147 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRADEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI + +
Sbjct: 16 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY 72
Query: 78 YYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
A + Y D PGH D+ DG ++VV +G
Sbjct: 73 -----STAARHYAH-----------TDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP 116
Query: 138 QTETVL---RQALGERIRPVLTVNKMD 161
QT L RQ E + V+ VNK D
Sbjct: 117 QTREHLLLARQIGVEHV--VVYVNKAD 141
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK++LT +L TD ++E RGI+I+
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIR 56
Query: 81 MTDDALKSYKGERNGN-----EYL--INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
R N E+L ++ +DSPGH + + + + DGA++V+ E
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE 116
Query: 134 GVCVQTET----VLRQALG-ERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVV-----E 183
C Q +T + + LG ++I ++ NK+D L + EE Y+ V E
Sbjct: 117 -PCPQPQTKEHLMALEILGIDKI--IIVQNKID---LVDEKQAEENYEQIKEFVKGTIAE 170
Query: 184 NANVI 188
NA +I
Sbjct: 171 NAPII 175
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 27/122 (22%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T ++E +RG+TIK T I
Sbjct: 11 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 57
Query: 77 LYYE-------MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G + ++L I+ ID+PGH + + + + DGA++
Sbjct: 58 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 116
Query: 128 VV 129
VV
Sbjct: 117 VV 118
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 27/122 (22%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T ++E +RG+TIK T I
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 56
Query: 77 LYYE-------MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G + ++L I+ ID+PGH + + + + DGA++
Sbjct: 57 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 115
Query: 128 VV 129
VV
Sbjct: 116 VV 117
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 732 VEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSG 791
VE+ PE+ +G + LN +RG + R + I+A++P+ E FG++ LR+ T G
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQG 60
Query: 792 QA 793
+
Sbjct: 61 RG 62
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 31/123 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 98 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIXGISQADXAILC 141
Query: 129 VDC 131
VDC
Sbjct: 142 VDC 144
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 31/123 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 98 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIMGISQADMAILC 141
Query: 129 VDC 131
VDC
Sbjct: 142 VDC 144
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI T + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKKLGYAETNIGVCESCKKPEAY 56
Query: 81 MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G + ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 57 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 106
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 31/123 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRADEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ S+ N ++D+PGH DF + D A++
Sbjct: 232 TVS-------------ICTSHFSTHRAN---FTIVDAPGHRDFVPNAIMGISQADMAILC 275
Query: 129 VDC 131
VDC
Sbjct: 276 VDC 278
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 49/225 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA--------QEVAGDVR-------MTDTRADEAE 65
++ V HVD GKST+ ++ G I E A + + DT +E
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 66 RGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+T+ D A +++ ++ + + D+PGH DF S + A D A
Sbjct: 239 RGVTM------------DVASTTFESDKK----IYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 126 LVVVDC---------IEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176
++VVD +E + L +ALG V++VNK+D L E+ +Q
Sbjct: 283 VLVVDSSQNNFERGFLENGQTREHAYLLRALGIS-EIVVSVNKLD-----LMSWSEDRFQ 336
Query: 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF---SAGLHGW 218
+V + + M ++ + V + GT S+ L+ W
Sbjct: 337 EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKW 381
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 32/141 (22%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
++++ HVDHGK++L + +R T + EA GIT I Y+
Sbjct: 7 VTIMGHVDHGKTSLLEY---------------IRSTKVASGEA-GGIT---QHIGAYHVE 47
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
T++ + I +D+PGH F+S + TD ++VV +GV QT
Sbjct: 48 TENGM-------------ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94
Query: 142 VLRQALGERIRPVLTVNKMDR 162
++ A ++ V+ VNK+D+
Sbjct: 95 AIQHAKAAQVPVVVAVNKIDK 115
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI + + + + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGIWTSKHSEET----IKLGYAETNIGVCESCKKPEAY 62
Query: 81 MTDDALKSYKGERNGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G + ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 63 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 112
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 591 ARPLEEGLAEAIDDGRIGPRDD-PKARSKILSEEFGWDKDLAKKIW-CFGPETTGPN 645
AR L EGL + R+G +DD + +S + WD + KKI F P +GPN
Sbjct: 266 ARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPN 322
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 26 AHVDHGKSTLTDSLVAAAGIIAQE----VAGDVRMTDTRADEAERGITIKSTGISLYYEM 81
+VD GKSTL L+ + I ++ + D + + T D+ + + + +
Sbjct: 31 GNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90
Query: 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-- 139
T D +Y+ I + D+PGH ++ D A+++VD GV QT
Sbjct: 91 TIDV--AYRYFSTAKRKFI-IADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRR 147
Query: 140 ETVLRQALGERIRPVLTVNKMD------RCFLELQVD 170
+ + LG + V+ +NK D R F ++ D
Sbjct: 148 HSYIASLLGIK-HIVVAINKXDLNGFDERVFESIKAD 183
>pdb|3UJ3|X Chain X, Crystal Structure Of The Synaptic Tetramer Of The
G-Segment Invertase (Gin)
Length = 193
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 499 SDLPKLVEGLKRLAKSDPMVVCTIEESG---EHIVAGAGELHLE-ICLKDLQDDFMGGAE 554
+D P L LKRL K D +VV ++ G +H+++ GEL I + L D
Sbjct: 40 TDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD------S 93
Query: 555 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR 610
I S P+ F VM L +E R + GLA A + GRIG R
Sbjct: 94 IDTSSPMGRF--------FFHVMGALAEVERELIIE-RTM-AGLAAARNKGRIGGR 139
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVD GKST+ ++ G++ + + + A E R S + E
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRT---LEKYEREAKEKNRETWYLSWALDTNQE 75
Query: 81 MTDDALKSYKGERNGNEYL------INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
D K G Y ++D+PGH F + D A++V+ +G
Sbjct: 76 ERDKG----KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
N+ I HVDHGK+TLT A ++A+ G R
Sbjct: 6 NVGTIGHVDHGKTTLT---AAITTVLAKTYGGAAR 37
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
N+ I HVD GKSTL +++ G++ + + + A EA + +S +S +
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKI---EREAKEAGK----ESWYLSWALD 97
Query: 81 MTDDALKSYKGERNGNEYL------INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
T + + K G Y +L+D+PGH + + + D ++V+ G
Sbjct: 98 STSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 162 RC 163
+C
Sbjct: 78 KC 79
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 162 RC 163
+C
Sbjct: 78 KC 79
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 18/184 (9%)
Query: 515 DPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMG--GAEI-IKSDP----VVSFRET 567
D + VC I SG H + LH + K+ + D A+I + S P + + T
Sbjct: 184 DNIRVCKILGSGVH---SSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT 240
Query: 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEE-GLAEAIDDGRIGP---RDDPKARSKILSEE 623
VL KS +M+ S + N + + + + + G + GR+ K ++
Sbjct: 241 VLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLN 300
Query: 624 FGWD-KDLAKKIWCFGPETTGPNMVVDM--CKGVQYLNEIKDSVVAGFQWASKEGALAEE 680
WD + L K + P ++ +M C V YL+E+ D+ V F+ ++GA++
Sbjct: 301 SKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSV-YLSEVGDTQVVVFKHEKEDGAISTI 359
Query: 681 NMRG 684
+RG
Sbjct: 360 VLRG 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,808,505
Number of Sequences: 62578
Number of extensions: 1042992
Number of successful extensions: 2633
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 148
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)