Query 003165
Match_columns 843
No_of_seqs 320 out of 2697
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 9E-181 2E-185 1421.2 50.5 839 1-843 1-842 (842)
2 PLN00116 translation elongatio 100.0 4E-157 8E-162 1422.3 86.6 843 1-843 1-843 (843)
3 PTZ00416 elongation factor 2; 100.0 4E-156 9E-161 1409.7 84.6 834 1-843 1-836 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 5E-142 1E-146 1158.3 57.5 824 3-842 112-954 (971)
5 PRK07560 elongation factor EF- 100.0 1E-128 3E-133 1161.9 70.2 720 5-841 6-731 (731)
6 COG0480 FusA Translation elong 100.0 2E-127 4E-132 1114.7 61.7 669 16-829 7-697 (697)
7 KOG0467 Translation elongation 100.0 1E-128 2E-133 1074.4 43.6 802 14-843 4-884 (887)
8 TIGR00490 aEF-2 translation el 100.0 8E-123 2E-127 1108.6 67.1 713 4-832 4-720 (720)
9 KOG0465 Mitochondrial elongati 100.0 7E-124 2E-128 1015.9 40.6 661 17-821 37-719 (721)
10 PRK12739 elongation factor G; 100.0 2E-114 3E-119 1035.2 66.1 665 16-822 5-687 (691)
11 PRK00007 elongation factor G; 100.0 3E-114 7E-119 1031.7 64.5 666 16-822 7-690 (693)
12 TIGR00484 EF-G translation elo 100.0 5E-111 1E-115 1006.3 64.3 663 15-822 6-687 (689)
13 PRK13351 elongation factor G; 100.0 1E-108 2E-113 989.0 63.5 662 16-820 5-685 (687)
14 PRK12740 elongation factor G; 100.0 6E-102 1E-106 929.7 60.5 647 25-820 1-667 (668)
15 KOG0464 Elongation factor G [T 100.0 1.8E-97 4E-102 771.9 28.4 659 17-808 35-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 2.7E-77 5.8E-82 694.8 49.3 464 19-809 1-475 (594)
17 PRK10218 GTP-binding protein; 100.0 1E-75 2.2E-80 679.8 49.6 465 17-808 3-479 (607)
18 PRK05433 GTP-binding protein L 100.0 7E-74 1.5E-78 668.9 49.8 469 14-805 2-481 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 8.6E-73 1.9E-77 659.2 51.3 485 18-824 2-516 (595)
20 COG1217 TypA Predicted membran 100.0 2.7E-66 6E-71 549.4 38.2 466 17-809 3-479 (603)
21 PRK00741 prfC peptide chain re 100.0 3.5E-66 7.6E-71 594.7 38.4 437 13-569 4-472 (526)
22 TIGR00503 prfC peptide chain r 100.0 4.6E-64 9.9E-69 577.3 36.8 436 11-564 3-468 (527)
23 KOG0462 Elongation factor-type 100.0 3.4E-64 7.3E-69 543.9 32.2 467 17-803 58-532 (650)
24 COG0481 LepA Membrane GTPase L 100.0 6.8E-59 1.5E-63 494.7 34.7 471 15-804 5-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 4.2E-51 9E-56 432.4 24.3 433 16-562 9-467 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 6.5E-39 1.4E-43 330.6 19.7 204 20-229 1-209 (222)
27 cd01683 EF2_IV_snRNP EF-2_doma 100.0 4.1E-38 8.9E-43 311.8 18.3 174 559-732 1-178 (178)
28 cd01886 EF-G Elongation factor 100.0 1.7E-36 3.7E-41 322.4 22.6 255 21-343 1-270 (270)
29 CHL00071 tufA elongation facto 100.0 8.6E-33 1.9E-37 312.3 27.2 301 10-471 3-307 (409)
30 cd04169 RF3 RF3 subfamily. Pe 100.0 1.8E-33 3.8E-38 299.1 19.9 246 18-343 1-267 (267)
31 cd04168 TetM_like Tet(M)-like 100.0 4.4E-33 9.6E-38 291.3 21.6 222 21-343 1-237 (237)
32 cd01681 aeEF2_snRNP_like_IV Th 100.0 9.4E-33 2E-37 275.8 18.1 173 559-731 1-177 (177)
33 COG5256 TEF1 Translation elong 100.0 2E-31 4.4E-36 284.4 28.1 286 15-469 3-313 (428)
34 PRK12736 elongation factor Tu; 100.0 1.1E-31 2.4E-36 301.8 26.3 287 14-471 7-297 (394)
35 PLN03126 Elongation factor Tu; 100.0 1E-30 2.2E-35 297.5 27.5 302 9-471 71-376 (478)
36 PRK12735 elongation factor Tu; 100.0 1.2E-30 2.5E-35 293.8 26.8 292 11-471 4-299 (396)
37 TIGR00485 EF-Tu translation el 100.0 2.2E-30 4.7E-35 291.8 27.3 288 13-471 6-297 (394)
38 PLN00043 elongation factor 1-a 100.0 1.7E-30 3.7E-35 294.8 26.5 290 14-470 2-317 (447)
39 PRK05306 infB translation init 100.0 1E-29 2.2E-34 301.7 32.0 314 17-537 288-628 (787)
40 cd04170 EF-G_bact Elongation f 100.0 8.5E-31 1.9E-35 280.6 20.3 252 21-343 1-268 (268)
41 PRK00049 elongation factor Tu; 100.0 6.4E-30 1.4E-34 287.5 27.8 292 11-471 4-299 (396)
42 PTZ00141 elongation factor 1- 100.0 3.6E-30 7.8E-35 292.5 25.6 289 15-470 3-317 (446)
43 COG0050 TufB GTPases - transla 100.0 2.3E-30 5E-35 261.7 20.5 288 13-471 6-297 (394)
44 KOG0460 Mitochondrial translat 100.0 1.1E-30 2.5E-35 268.6 16.3 287 16-471 51-341 (449)
45 PLN03127 Elongation factor Tu; 100.0 4.2E-29 9.2E-34 283.1 29.1 289 15-470 57-349 (447)
46 cd04167 Snu114p Snu114p subfam 100.0 1.4E-29 3E-34 262.0 20.7 197 20-229 1-200 (213)
47 TIGR02034 CysN sulfate adenyly 100.0 1.9E-28 4.2E-33 276.4 26.7 145 21-189 2-164 (406)
48 PRK12317 elongation factor 1-a 100.0 3.5E-28 7.7E-33 277.1 25.8 286 17-471 4-310 (425)
49 TIGR00487 IF-2 translation ini 100.0 3.5E-27 7.7E-32 274.5 32.0 304 18-521 86-418 (587)
50 PRK05124 cysN sulfate adenylyl 100.0 2.4E-27 5.3E-32 271.3 29.3 132 16-163 24-173 (474)
51 TIGR00483 EF-1_alpha translati 100.0 2E-27 4.3E-32 270.9 27.2 289 14-471 2-312 (426)
52 CHL00189 infB translation init 100.0 1.9E-26 4.1E-31 271.4 29.6 319 17-538 242-584 (742)
53 PTZ00327 eukaryotic translatio 100.0 9.4E-27 2E-31 263.2 25.8 134 17-163 32-184 (460)
54 KOG0458 Elongation factor 1 al 99.9 1E-25 2.2E-30 248.5 24.1 287 16-468 174-487 (603)
55 PF00009 GTP_EFTU: Elongation 99.9 3.9E-27 8.4E-32 238.9 11.5 170 17-220 1-175 (188)
56 PRK05506 bifunctional sulfate 99.9 3.7E-25 8E-30 263.6 26.1 130 18-163 23-170 (632)
57 PRK10512 selenocysteinyl-tRNA- 99.9 9E-25 1.9E-29 256.5 25.9 115 21-163 2-117 (614)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.7E-25 3.7E-30 227.1 14.4 166 20-218 3-169 (195)
59 PRK04000 translation initiatio 99.9 4E-24 8.7E-29 241.3 26.4 136 15-163 5-152 (411)
60 TIGR03680 eif2g_arch translati 99.9 2E-23 4.4E-28 235.9 26.9 133 18-163 3-147 (406)
61 COG5257 GCD11 Translation init 99.9 6.4E-23 1.4E-27 210.6 25.5 331 17-536 8-363 (415)
62 TIGR00475 selB selenocysteine- 99.9 7E-23 1.5E-27 240.0 24.0 114 21-163 2-116 (581)
63 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.3E-23 2.8E-28 216.5 15.4 127 21-163 1-143 (208)
64 COG2895 CysN GTPases - Sulfate 99.9 6.3E-23 1.4E-27 213.4 20.3 151 18-192 5-173 (431)
65 KOG1145 Mitochondrial translat 99.9 1.1E-22 2.4E-27 221.6 20.3 126 18-178 152-277 (683)
66 cd01883 EF1_alpha Eukaryotic e 99.9 2.7E-23 6E-28 215.7 14.5 127 21-163 1-150 (219)
67 COG0532 InfB Translation initi 99.9 1.9E-21 4.2E-26 215.3 23.5 129 18-179 4-132 (509)
68 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3.8E-23 8.3E-28 178.1 7.5 80 727-806 1-80 (80)
69 COG3276 SelB Selenocysteine-sp 99.9 1.6E-21 3.4E-26 210.5 20.9 129 21-184 2-131 (447)
70 COG5258 GTPBP1 GTPase [General 99.9 7.4E-21 1.6E-25 199.2 19.4 299 17-459 115-424 (527)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 4.3E-21 9.3E-26 195.6 17.0 144 18-181 1-144 (194)
72 PRK04004 translation initiatio 99.9 4.6E-20 1E-24 215.7 26.5 130 18-163 5-136 (586)
73 KOG0459 Polypeptide release fa 99.8 5.2E-21 1.1E-25 201.8 12.8 153 16-190 76-251 (501)
74 cd01890 LepA LepA subfamily. 99.8 5E-20 1.1E-24 184.8 17.3 132 20-163 1-132 (179)
75 PF00679 EFG_C: Elongation fac 99.8 6.7E-21 1.5E-25 168.1 8.2 85 724-809 1-85 (89)
76 smart00838 EFG_C Elongation fa 99.8 6E-21 1.3E-25 167.0 6.6 83 725-809 1-83 (85)
77 KOG0461 Selenocysteine-specifi 99.8 2.5E-19 5.5E-24 185.1 19.2 129 19-163 7-135 (522)
78 PF03764 EFG_IV: Elongation fa 99.8 2.8E-20 6E-25 174.3 9.3 99 622-722 22-120 (120)
79 TIGR00491 aIF-2 translation in 99.8 2.8E-18 6E-23 199.9 27.7 129 19-163 4-134 (590)
80 cd04096 eEF2_snRNP_like_C eEF2 99.8 2.5E-20 5.4E-25 161.2 7.8 80 727-806 1-80 (80)
81 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 3.2E-20 7E-25 159.6 7.4 78 727-806 1-78 (78)
82 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.3E-19 2.8E-24 188.0 11.9 140 21-163 1-151 (224)
83 cd01888 eIF2_gamma eIF2-gamma 99.8 2.2E-19 4.8E-24 184.3 12.4 131 20-163 1-150 (203)
84 cd03711 Tet_C Tet_C: C-terminu 99.8 5.9E-20 1.3E-24 157.9 6.8 78 727-806 1-78 (78)
85 PF14492 EFG_II: Elongation Fa 99.8 8.9E-20 1.9E-24 154.8 7.4 73 485-559 2-75 (75)
86 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 1E-19 2.2E-24 156.6 6.8 78 727-806 1-78 (78)
87 cd03710 BipA_TypA_C BipA_TypA_ 99.8 3.9E-19 8.4E-24 153.1 8.0 78 727-805 1-78 (79)
88 cd01514 Elongation_Factor_C El 99.8 5.8E-19 1.3E-23 152.4 7.2 79 727-806 1-79 (79)
89 cd01889 SelB_euk SelB subfamil 99.8 8.1E-18 1.7E-22 171.2 16.4 132 21-163 2-133 (192)
90 cd03709 lepA_C lepA_C: This fa 99.7 2.1E-18 4.7E-23 148.7 6.8 78 727-805 1-79 (80)
91 cd00881 GTP_translation_factor 99.7 4.6E-17 9.9E-22 164.3 15.3 127 21-163 1-127 (189)
92 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 2.6E-17 5.6E-22 146.8 11.1 94 376-469 1-94 (94)
93 cd04171 SelB SelB subfamily. 99.7 2.4E-16 5.3E-21 155.2 14.2 115 21-163 2-117 (164)
94 cd03690 Tet_II Tet_II: This su 99.7 1.6E-16 3.5E-21 138.8 9.8 83 373-468 1-84 (85)
95 KOG0463 GTP-binding protein GP 99.7 1.3E-16 2.8E-21 166.6 9.2 306 20-471 134-456 (641)
96 cd01684 Tet_like_IV EF-G_domai 99.7 7.2E-16 1.6E-20 142.7 11.4 75 644-722 40-115 (115)
97 PRK14845 translation initiatio 99.6 1.4E-14 2.9E-19 176.5 25.3 116 32-163 474-591 (1049)
98 cd04092 mtEFG2_II_like mtEFG2_ 99.6 1.5E-15 3.2E-20 132.4 9.6 82 376-469 1-83 (83)
99 cd03700 eEF2_snRNP_like_II EF2 99.6 5.3E-15 1.1E-19 131.7 11.0 91 376-469 1-92 (93)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 9.9E-15 2.1E-19 144.5 14.1 114 21-163 2-115 (168)
101 cd01680 EFG_like_IV Elongation 99.6 6.3E-15 1.4E-19 137.2 11.9 77 644-722 40-116 (116)
102 COG1160 Predicted GTPases [Gen 99.6 7.1E-15 1.5E-19 160.9 13.4 115 18-163 177-302 (444)
103 cd03689 RF3_II RF3_II: this su 99.6 4.3E-15 9.3E-20 129.6 9.1 80 378-469 1-84 (85)
104 PRK00093 GTP-binding protein D 99.6 1.9E-14 4E-19 165.4 15.5 115 18-163 172-297 (435)
105 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 9.2E-15 2E-19 127.5 9.5 81 376-468 1-82 (83)
106 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.3E-14 2.8E-19 125.8 9.7 79 376-468 1-80 (81)
107 KOG1144 Translation initiation 99.5 1.1E-14 2.3E-19 163.5 9.3 129 20-164 476-606 (1064)
108 TIGR03594 GTPase_EngA ribosome 99.5 6.7E-14 1.4E-18 160.6 16.1 114 19-163 172-296 (429)
109 COG1160 Predicted GTPases [Gen 99.5 5.4E-14 1.2E-18 154.1 12.7 113 20-163 4-125 (444)
110 cd03691 BipA_TypA_II BipA_TypA 99.5 8.2E-14 1.8E-18 122.3 10.4 84 376-468 1-85 (86)
111 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 4.4E-14 9.6E-19 131.3 8.9 83 637-722 32-116 (116)
112 cd01895 EngA2 EngA2 subfamily. 99.5 3.4E-13 7.4E-18 133.6 15.3 114 19-163 2-126 (174)
113 cd01894 EngA1 EngA1 subfamily. 99.5 1.1E-13 2.5E-18 135.0 11.5 110 23-163 1-118 (157)
114 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.5E-13 3.3E-18 136.0 12.0 115 21-163 1-120 (167)
115 COG2229 Predicted GTPase [Gene 99.5 3.5E-13 7.5E-18 130.0 13.3 130 19-173 10-141 (187)
116 PRK03003 GTP-binding protein D 99.5 1.4E-12 3.1E-17 150.7 21.0 115 18-163 210-335 (472)
117 KOG0466 Translation initiation 99.5 1.4E-13 2.9E-18 140.9 10.8 134 17-163 36-192 (466)
118 COG1159 Era GTPase [General fu 99.5 2.6E-13 5.6E-18 141.2 12.8 115 18-163 5-127 (298)
119 PRK15494 era GTPase Era; Provi 99.5 7.1E-13 1.5E-17 146.4 14.8 115 18-163 51-173 (339)
120 cd03699 lepA_II lepA_II: This 99.4 3.2E-13 7E-18 118.4 9.2 81 376-469 1-86 (86)
121 cd01693 mtEFG2_like_IV mtEF-G2 99.4 3.1E-13 6.7E-18 126.5 8.6 67 653-722 54-120 (120)
122 TIGR03594 GTPase_EngA ribosome 99.4 4.6E-13 1E-17 153.6 11.9 112 21-163 1-120 (429)
123 cd01864 Rab19 Rab19 subfamily. 99.4 8.2E-13 1.8E-17 130.7 11.8 116 18-163 2-121 (165)
124 PRK03003 GTP-binding protein D 99.4 8.9E-13 1.9E-17 152.4 13.4 117 16-163 35-159 (472)
125 TIGR03598 GTPase_YsxC ribosome 99.4 2.9E-12 6.2E-17 128.9 15.1 114 17-163 16-142 (179)
126 PF02421 FeoB_N: Ferrous iron 99.4 5.6E-13 1.2E-17 129.1 9.1 109 21-163 2-118 (156)
127 PRK09554 feoB ferrous iron tra 99.4 8.1E-12 1.8E-16 150.5 20.7 110 20-163 4-125 (772)
128 TIGR00436 era GTP-binding prot 99.4 2.3E-12 5.1E-17 138.2 14.4 111 21-163 2-120 (270)
129 KOG1143 Predicted translation 99.4 6.7E-13 1.4E-17 139.1 9.5 158 20-190 168-333 (591)
130 PRK09518 bifunctional cytidyla 99.4 1.5E-12 3.2E-17 157.6 13.7 115 18-163 449-574 (712)
131 PRK00093 GTP-binding protein D 99.4 1.5E-12 3.3E-17 149.5 12.7 113 20-163 2-122 (435)
132 cd04114 Rab30 Rab30 subfamily. 99.4 2.6E-12 5.7E-17 127.4 12.1 118 14-163 2-125 (169)
133 cd04164 trmE TrmE (MnmE, ThdF, 99.4 2.8E-12 6E-17 125.0 11.6 110 21-163 3-120 (157)
134 cd04105 SR_beta Signal recogni 99.4 6.1E-12 1.3E-16 129.1 14.4 130 20-184 1-140 (203)
135 PRK15467 ethanolamine utilizat 99.4 3.1E-12 6.7E-17 125.9 11.3 99 20-163 2-104 (158)
136 cd01898 Obg Obg subfamily. Th 99.4 5.8E-12 1.3E-16 124.9 13.2 111 21-163 2-127 (170)
137 smart00178 SAR Sar1p-like memb 99.4 5.8E-12 1.3E-16 127.2 13.3 121 8-163 6-131 (184)
138 TIGR00231 small_GTP small GTP- 99.4 2.6E-12 5.7E-17 124.5 10.2 113 20-163 2-121 (161)
139 cd04124 RabL2 RabL2 subfamily. 99.4 6.2E-12 1.3E-16 124.1 12.9 113 21-163 2-117 (161)
140 PRK09518 bifunctional cytidyla 99.4 4.4E-12 9.5E-17 153.5 14.1 115 18-163 274-396 (712)
141 cd00878 Arf_Arl Arf (ADP-ribos 99.3 4.6E-12 9.9E-17 124.2 11.4 108 21-163 1-113 (158)
142 cd04157 Arl6 Arl6 subfamily. 99.3 7.7E-12 1.7E-16 122.9 12.8 110 21-163 1-117 (162)
143 PRK00089 era GTPase Era; Revie 99.3 1.2E-11 2.6E-16 134.5 15.5 115 18-163 4-126 (292)
144 cd04115 Rab33B_Rab33A Rab33B/R 99.3 6.6E-12 1.4E-16 125.0 12.4 115 19-163 2-122 (170)
145 cd00879 Sar1 Sar1 subfamily. 99.3 6.4E-12 1.4E-16 127.4 12.1 122 7-163 7-133 (190)
146 cd04113 Rab4 Rab4 subfamily. 99.3 6.3E-12 1.4E-16 123.7 11.7 113 21-163 2-118 (161)
147 cd04154 Arl2 Arl2 subfamily. 99.3 9.2E-12 2E-16 124.3 13.0 112 17-163 12-128 (173)
148 cd01879 FeoB Ferrous iron tran 99.3 3.1E-12 6.7E-17 125.1 9.3 106 24-163 1-114 (158)
149 cd04145 M_R_Ras_like M-Ras/R-R 99.3 6.7E-12 1.5E-16 123.6 11.7 112 20-163 3-120 (164)
150 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.5E-11 3.2E-16 123.0 14.3 120 8-163 5-129 (174)
151 cd04151 Arl1 Arl1 subfamily. 99.3 8.7E-12 1.9E-16 122.5 12.3 108 21-163 1-113 (158)
152 PF01926 MMR_HSR1: 50S ribosom 99.3 1E-11 2.2E-16 115.4 12.2 107 21-159 1-116 (116)
153 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.1E-11 2.4E-16 123.1 12.9 108 21-163 1-113 (167)
154 cd04106 Rab23_lke Rab23-like s 99.3 1E-11 2.2E-16 122.1 12.3 115 21-163 2-119 (162)
155 smart00175 RAB Rab subfamily o 99.3 1.8E-11 3.9E-16 120.5 13.8 113 21-163 2-118 (164)
156 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1E-11 2.3E-16 141.3 13.6 113 19-163 203-323 (442)
157 cd04163 Era Era subfamily. Er 99.3 3.5E-11 7.7E-16 118.0 15.2 114 19-163 3-124 (168)
158 cd01866 Rab2 Rab2 subfamily. 99.3 1.2E-11 2.6E-16 122.9 11.8 115 19-163 4-122 (168)
159 cd01861 Rab6 Rab6 subfamily. 99.3 1.3E-11 2.9E-16 121.2 11.8 114 20-163 1-118 (161)
160 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 1.3E-11 2.9E-16 122.2 11.5 108 22-163 2-112 (164)
161 smart00173 RAS Ras subfamily o 99.3 1.5E-11 3.2E-16 121.3 11.0 111 21-163 2-118 (164)
162 cd04159 Arl10_like Arl10-like 99.3 1.8E-11 3.9E-16 119.1 11.4 108 22-163 2-114 (159)
163 cd01893 Miro1 Miro1 subfamily. 99.3 4.8E-11 1E-15 118.3 14.6 111 21-163 2-116 (166)
164 cd01882 BMS1 Bms1. Bms1 is an 99.3 2.9E-11 6.2E-16 126.1 13.4 107 18-163 38-146 (225)
165 cd01897 NOG NOG1 is a nucleola 99.3 2.5E-11 5.3E-16 120.3 12.3 112 20-163 1-126 (168)
166 cd01862 Rab7 Rab7 subfamily. 99.3 3.3E-11 7.1E-16 119.7 13.2 113 21-163 2-122 (172)
167 PRK05291 trmE tRNA modificatio 99.3 1.5E-11 3.2E-16 140.9 12.0 111 20-163 216-334 (449)
168 cd04122 Rab14 Rab14 subfamily. 99.3 5E-11 1.1E-15 118.0 13.7 114 20-163 3-120 (166)
169 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 2.3E-11 5E-16 122.8 11.4 114 20-163 4-122 (183)
170 cd01878 HflX HflX subfamily. 99.3 3E-11 6.5E-16 124.1 12.1 116 17-163 39-166 (204)
171 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 7.1E-11 1.5E-15 121.1 14.6 112 21-163 2-123 (201)
172 cd01863 Rab18 Rab18 subfamily. 99.3 2.8E-11 6E-16 119.0 10.9 113 21-163 2-119 (161)
173 cd04158 ARD1 ARD1 subfamily. 99.3 3.8E-11 8.3E-16 119.4 11.8 108 21-163 1-113 (169)
174 cd01867 Rab8_Rab10_Rab13_like 99.3 4.3E-11 9.3E-16 118.7 12.0 115 19-163 3-121 (167)
175 COG0486 ThdF Predicted GTPase 99.2 3.1E-11 6.7E-16 132.9 11.9 113 19-163 217-337 (454)
176 cd04147 Ras_dva Ras-dva subfam 99.2 2.4E-11 5.2E-16 124.2 10.4 111 21-163 1-117 (198)
177 cd04116 Rab9 Rab9 subfamily. 99.2 1.1E-10 2.3E-15 116.1 14.7 116 18-163 4-127 (170)
178 cd00877 Ran Ran (Ras-related n 99.2 2.8E-11 6.2E-16 120.0 10.6 113 21-163 2-117 (166)
179 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 5E-11 1.1E-15 118.0 12.3 115 19-163 2-120 (166)
180 cd04138 H_N_K_Ras_like H-Ras/N 99.2 4E-11 8.6E-16 117.6 11.4 111 21-163 3-119 (162)
181 PRK04213 GTP-binding protein; 99.2 5.8E-11 1.3E-15 121.6 13.0 111 17-163 7-143 (201)
182 PTZ00369 Ras-like protein; Pro 99.2 6E-11 1.3E-15 120.4 12.9 114 19-163 5-123 (189)
183 cd04119 RJL RJL (RabJ-Like) su 99.2 3.9E-11 8.4E-16 118.4 11.2 113 21-163 2-123 (168)
184 cd04149 Arf6 Arf6 subfamily. 99.2 5.2E-11 1.1E-15 118.4 12.0 110 19-163 9-123 (168)
185 cd04123 Rab21 Rab21 subfamily. 99.2 9.5E-11 2E-15 114.9 13.5 113 21-163 2-118 (162)
186 cd00154 Rab Rab family. Rab G 99.2 4.7E-11 1E-15 116.1 11.2 113 21-163 2-118 (159)
187 cd01860 Rab5_related Rab5-rela 99.2 4.3E-11 9.4E-16 117.8 11.0 113 21-163 3-119 (163)
188 cd04139 RalA_RalB RalA/RalB su 99.2 7.6E-11 1.6E-15 115.9 12.6 112 21-163 2-118 (164)
189 COG1084 Predicted GTPase [Gene 99.2 7.9E-11 1.7E-15 123.7 13.2 125 7-163 156-293 (346)
190 cd04150 Arf1_5_like Arf1-Arf5- 99.2 8.3E-11 1.8E-15 115.8 12.5 108 21-163 2-114 (159)
191 cd00880 Era_like Era (E. coli 99.2 6.3E-11 1.4E-15 114.8 11.5 110 24-163 1-117 (163)
192 cd04137 RheB Rheb (Ras Homolog 99.2 5.2E-11 1.1E-15 119.6 11.2 113 20-163 2-119 (180)
193 TIGR02528 EutP ethanolamine ut 99.2 2.9E-11 6.3E-16 116.4 8.9 97 20-163 1-101 (142)
194 cd04146 RERG_RasL11_like RERG/ 99.2 5.3E-11 1.2E-15 117.7 10.9 112 21-163 1-119 (165)
195 cd04175 Rap1 Rap1 subgroup. T 99.2 9.3E-11 2E-15 115.8 12.6 111 21-163 3-119 (164)
196 cd04120 Rab12 Rab12 subfamily. 99.2 7.8E-11 1.7E-15 120.6 12.3 111 21-163 2-118 (202)
197 cd04155 Arl3 Arl3 subfamily. 99.2 8.9E-11 1.9E-15 116.9 12.4 112 17-163 12-128 (173)
198 cd04177 RSR1 RSR1 subgroup. R 99.2 6.2E-11 1.4E-15 117.7 11.0 111 21-163 3-119 (168)
199 PLN03118 Rab family protein; P 99.2 1.1E-10 2.4E-15 120.6 12.9 114 19-163 14-133 (211)
200 PF09439 SRPRB: Signal recogni 99.2 6.7E-11 1.5E-15 117.2 10.6 129 19-185 3-144 (181)
201 cd04156 ARLTS1 ARLTS1 subfamil 99.2 6.8E-11 1.5E-15 116.1 10.7 109 21-163 1-114 (160)
202 TIGR03156 GTP_HflX GTP-binding 99.2 7.3E-11 1.6E-15 130.7 12.1 115 18-163 188-314 (351)
203 cd01865 Rab3 Rab3 subfamily. 99.2 8.6E-11 1.9E-15 116.3 11.3 114 20-163 2-119 (165)
204 cd04110 Rab35 Rab35 subfamily. 99.2 9.2E-11 2E-15 120.0 11.9 116 18-163 5-123 (199)
205 cd01868 Rab11_like Rab11-like. 99.2 8.8E-11 1.9E-15 116.0 11.3 115 19-163 3-121 (165)
206 cd04136 Rap_like Rap-like subf 99.2 8.7E-11 1.9E-15 115.6 11.0 112 20-163 2-119 (163)
207 COG0218 Predicted GTPase [Gene 99.2 2E-10 4.3E-15 113.7 13.3 112 18-163 23-148 (200)
208 PLN00223 ADP-ribosylation fact 99.2 2E-10 4.4E-15 115.7 13.6 111 18-163 16-131 (181)
209 cd04140 ARHI_like ARHI subfami 99.2 1.4E-10 2.9E-15 114.9 11.9 112 20-163 2-121 (165)
210 smart00177 ARF ARF-like small 99.2 1.7E-10 3.6E-15 115.6 12.7 110 19-163 13-127 (175)
211 PRK00454 engB GTP-binding prot 99.2 2.7E-10 5.9E-15 115.9 14.4 114 17-163 22-148 (196)
212 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 1E-10 2.2E-15 116.7 10.9 113 21-163 2-119 (170)
213 cd04142 RRP22 RRP22 subfamily. 99.2 9.3E-11 2E-15 119.9 10.8 113 21-163 2-129 (198)
214 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.5E-10 5.3E-15 116.6 13.9 113 20-163 1-129 (196)
215 cd04101 RabL4 RabL4 (Rab-like4 99.2 1.8E-10 3.9E-15 113.6 12.3 114 21-163 2-120 (164)
216 cd04144 Ras2 Ras2 subfamily. 99.2 1.1E-10 2.5E-15 118.4 10.7 111 21-163 1-119 (190)
217 cd04112 Rab26 Rab26 subfamily. 99.2 1.4E-10 3E-15 117.9 11.3 112 21-163 2-119 (191)
218 PLN03110 Rab GTPase; Provision 99.2 1.8E-10 3.9E-15 119.5 12.1 117 17-163 10-130 (216)
219 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.2 1.4E-10 3.1E-15 115.8 10.9 112 20-163 3-120 (172)
220 cd04132 Rho4_like Rho4-like su 99.2 2.3E-10 5E-15 115.7 12.2 112 21-163 2-118 (187)
221 cd00876 Ras Ras family. The R 99.2 1.6E-10 3.4E-15 113.1 10.4 112 21-163 1-117 (160)
222 PLN03071 GTP-binding nuclear p 99.1 2E-10 4.3E-15 119.4 11.6 116 18-163 12-130 (219)
223 cd04127 Rab27A Rab27a subfamil 99.1 2.8E-10 6.1E-15 114.2 12.3 125 19-163 4-133 (180)
224 PRK11058 GTPase HflX; Provisio 99.1 2.3E-10 4.9E-15 129.7 12.4 114 19-163 197-322 (426)
225 smart00176 RAN Ran (Ras-relate 99.1 1.9E-10 4.1E-15 117.6 10.6 109 25-163 1-112 (200)
226 PTZ00133 ADP-ribosylation fact 99.1 4.7E-10 1E-14 113.1 13.3 109 20-163 18-131 (182)
227 cd04126 Rab20 Rab20 subfamily. 99.1 5.6E-10 1.2E-14 115.7 14.0 108 21-163 2-113 (220)
228 cd04176 Rap2 Rap2 subgroup. T 99.1 3.5E-10 7.6E-15 111.4 12.0 111 21-163 3-119 (163)
229 KOG0052 Translation elongation 99.1 1.9E-11 4E-16 131.5 3.0 131 14-163 2-155 (391)
230 cd04118 Rab24 Rab24 subfamily. 99.1 3.6E-10 7.8E-15 114.9 12.2 114 21-163 2-118 (193)
231 cd04109 Rab28 Rab28 subfamily. 99.1 3.5E-10 7.5E-15 117.3 12.2 112 21-163 2-122 (215)
232 cd04135 Tc10 TC10 subfamily. 99.1 1.7E-10 3.7E-15 115.0 9.2 111 21-163 2-117 (174)
233 cd00882 Ras_like_GTPase Ras-li 99.1 2.5E-10 5.3E-15 109.3 9.7 110 24-163 1-115 (157)
234 PRK12298 obgE GTPase CgtA; Rev 99.1 7.1E-10 1.5E-14 124.3 14.7 114 19-163 159-288 (390)
235 cd01881 Obg_like The Obg-like 99.1 2.5E-10 5.4E-15 113.7 9.9 109 24-163 1-133 (176)
236 cd01874 Cdc42 Cdc42 subfamily. 99.1 3.3E-10 7.1E-15 113.5 10.7 112 20-163 2-118 (175)
237 cd04121 Rab40 Rab40 subfamily. 99.1 6.5E-10 1.4E-14 112.7 12.9 117 17-163 4-123 (189)
238 KOG0084 GTPase Rab1/YPT1, smal 99.1 5E-10 1.1E-14 109.3 11.3 117 17-163 7-127 (205)
239 PLN03108 Rab family protein; P 99.1 8.9E-10 1.9E-14 113.8 13.7 116 18-163 5-124 (210)
240 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 1E-09 2.2E-14 110.6 13.4 114 18-163 4-122 (182)
241 cd04111 Rab39 Rab39 subfamily. 99.1 5.5E-10 1.2E-14 115.4 11.7 115 20-163 3-122 (211)
242 cd04131 Rnd Rnd subfamily. Th 99.1 7E-10 1.5E-14 111.4 12.1 111 21-163 3-118 (178)
243 cd00157 Rho Rho (Ras homology) 99.1 3.2E-10 6.9E-15 112.5 9.5 112 21-163 2-117 (171)
244 cd04125 RabA_like RabA-like su 99.1 5.9E-10 1.3E-14 112.9 11.7 113 21-163 2-118 (188)
245 cd01892 Miro2 Miro2 subfamily. 99.1 5.3E-10 1.1E-14 111.3 11.0 115 17-163 2-121 (169)
246 cd04134 Rho3 Rho3 subfamily. 99.1 3.3E-10 7.2E-15 114.9 9.7 112 20-163 1-117 (189)
247 PRK12299 obgE GTPase CgtA; Rev 99.1 7E-10 1.5E-14 121.9 12.8 115 18-163 157-284 (335)
248 cd04128 Spg1 Spg1p. Spg1p (se 99.1 9.7E-10 2.1E-14 110.8 12.8 111 21-163 2-117 (182)
249 PF08477 Miro: Miro-like prote 99.1 1.9E-10 4.2E-15 107.1 7.1 113 21-161 1-119 (119)
250 smart00174 RHO Rho (Ras homolo 99.1 7E-10 1.5E-14 110.5 11.7 110 22-163 1-115 (174)
251 PF00025 Arf: ADP-ribosylation 99.1 6.4E-10 1.4E-14 111.4 11.0 112 17-163 12-128 (175)
252 cd04133 Rop_like Rop subfamily 99.1 9.6E-10 2.1E-14 110.1 12.2 113 20-163 2-118 (176)
253 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 6.3E-10 1.4E-14 115.4 11.0 112 20-163 2-118 (222)
254 cd04143 Rhes_like Rhes_like su 99.1 8.2E-10 1.8E-14 116.7 12.1 111 21-163 2-126 (247)
255 TIGR02729 Obg_CgtA Obg family 99.1 1.4E-09 3E-14 119.4 14.1 115 18-163 156-286 (329)
256 cd01850 CDC_Septin CDC/Septin. 99.1 2.6E-09 5.7E-14 114.6 15.8 123 20-163 5-156 (276)
257 cd04102 RabL3 RabL3 (Rab-like3 99.1 2.6E-09 5.6E-14 109.2 14.7 116 21-163 2-142 (202)
258 cd01871 Rac1_like Rac1-like su 99.1 7.6E-10 1.7E-14 110.7 10.7 112 20-163 2-118 (174)
259 cd01875 RhoG RhoG subfamily. 99.1 1.1E-09 2.3E-14 111.4 11.7 113 20-163 4-120 (191)
260 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 2.1E-09 4.5E-14 112.2 13.9 114 19-163 13-130 (232)
261 PF10662 PduV-EutP: Ethanolami 99.0 6.4E-10 1.4E-14 105.5 8.7 98 19-163 1-102 (143)
262 cd01870 RhoA_like RhoA-like su 99.0 7.4E-10 1.6E-14 110.5 9.5 112 20-163 2-118 (175)
263 PRK12296 obgE GTPase CgtA; Rev 99.0 2.8E-09 6.2E-14 121.5 14.3 114 18-163 158-297 (500)
264 cd04117 Rab15 Rab15 subfamily. 99.0 2.4E-09 5.2E-14 105.6 11.8 111 21-163 2-118 (161)
265 PTZ00132 GTP-binding nuclear p 99.0 2.1E-09 4.6E-14 111.3 12.0 116 18-163 8-126 (215)
266 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.3E-09 2.8E-14 108.8 9.2 111 21-163 2-117 (173)
267 cd01876 YihA_EngB The YihA (En 99.0 7.2E-09 1.6E-13 101.8 14.0 109 22-163 2-123 (170)
268 PRK12297 obgE GTPase CgtA; Rev 99.0 5.7E-09 1.2E-13 117.6 14.7 114 19-163 158-287 (424)
269 TIGR00437 feoB ferrous iron tr 99.0 1.7E-09 3.8E-14 127.6 11.0 104 26-163 1-112 (591)
270 KOG1423 Ras-like GTPase ERA [C 99.0 2.2E-09 4.8E-14 111.1 10.2 116 17-163 70-198 (379)
271 PLN00023 GTP-binding protein; 99.0 3.7E-09 8E-14 113.6 12.0 129 18-163 20-164 (334)
272 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.9 7.2E-09 1.6E-13 100.8 11.7 118 16-163 19-141 (221)
273 cd04148 RGK RGK subfamily. Th 98.9 4.9E-09 1.1E-13 109.1 11.4 110 21-163 2-119 (221)
274 cd04104 p47_IIGP_like p47 (47- 98.9 4.5E-09 9.7E-14 107.4 10.9 114 20-163 2-120 (197)
275 KOG0098 GTPase Rab2, small G p 98.9 5.4E-09 1.2E-13 100.8 10.2 115 19-163 6-124 (216)
276 KOG1191 Mitochondrial GTPase [ 98.9 6.5E-09 1.4E-13 114.3 10.9 118 15-163 264-402 (531)
277 PF00071 Ras: Ras family; Int 98.9 1.4E-08 3E-13 99.8 12.0 113 21-163 1-117 (162)
278 PRK09866 hypothetical protein; 98.9 2.2E-08 4.7E-13 114.6 14.6 67 97-163 229-302 (741)
279 KOG0095 GTPase Rab30, small G 98.9 3.3E-08 7.2E-13 91.4 12.8 116 17-163 5-125 (213)
280 cd01853 Toc34_like Toc34-like 98.8 9.7E-08 2.1E-12 100.7 17.3 118 15-163 27-162 (249)
281 KOG0394 Ras-related GTPase [Ge 98.8 7.2E-09 1.6E-13 99.8 7.4 117 17-163 7-131 (210)
282 KOG0092 GTPase Rab5/YPT51 and 98.8 8.1E-09 1.8E-13 100.6 7.7 115 19-163 5-123 (200)
283 KOG0080 GTPase Rab18, small G 98.8 1E-08 2.3E-13 96.1 8.0 116 18-163 10-130 (209)
284 KOG0078 GTP-binding protein SE 98.8 3.5E-08 7.5E-13 98.0 11.8 118 16-163 9-130 (207)
285 COG0370 FeoB Fe2+ transport sy 98.8 3.1E-08 6.7E-13 114.0 12.6 110 20-163 4-121 (653)
286 smart00053 DYNc Dynamin, GTPas 98.8 8.1E-08 1.7E-12 100.3 13.8 67 97-163 124-205 (240)
287 COG1100 GTPase SAR1 and relate 98.8 4E-08 8.6E-13 101.9 11.2 114 20-163 6-124 (219)
288 COG3596 Predicted GTPase [Gene 98.8 8.3E-08 1.8E-12 99.0 13.2 166 17-229 37-217 (296)
289 KOG0090 Signal recognition par 98.8 2.7E-08 5.9E-13 98.4 8.9 117 18-174 37-165 (238)
290 cd04129 Rho2 Rho2 subfamily. 98.7 4.8E-08 1E-12 98.9 10.7 112 20-163 2-118 (187)
291 cd01896 DRG The developmentall 98.7 1.3E-07 2.7E-12 99.2 13.9 98 21-151 2-106 (233)
292 KOG0073 GTP-binding ADP-ribosy 98.7 2.3E-07 4.9E-12 88.0 13.4 112 17-163 14-130 (185)
293 cd04103 Centaurin_gamma Centau 98.7 6E-08 1.3E-12 95.4 10.1 106 21-163 2-112 (158)
294 TIGR00991 3a0901s02IAP34 GTP-b 98.7 2.7E-07 5.9E-12 98.8 15.1 127 6-163 21-166 (313)
295 cd01873 RhoBTB RhoBTB subfamil 98.7 7.4E-08 1.6E-12 98.2 10.3 68 94-163 62-133 (195)
296 KOG1489 Predicted GTP-binding 98.7 1.2E-07 2.7E-12 99.1 10.9 115 18-163 195-325 (366)
297 COG2262 HflX GTPases [General 98.7 1E-07 2.2E-12 103.6 10.7 116 17-163 190-317 (411)
298 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3E-07 6.5E-12 95.4 13.4 133 21-189 1-144 (232)
299 KOG0087 GTPase Rab11/YPT3, sma 98.6 8.8E-08 1.9E-12 94.7 8.5 116 18-163 13-132 (222)
300 PF03144 GTP_EFTU_D2: Elongati 98.6 2.5E-08 5.4E-13 84.7 3.8 71 393-468 3-74 (74)
301 KOG0070 GTP-binding ADP-ribosy 98.6 1E-07 2.2E-12 92.8 8.2 112 17-163 15-131 (181)
302 TIGR02836 spore_IV_A stage IV 98.6 5.3E-07 1.1E-11 98.5 14.2 141 9-162 7-192 (492)
303 KOG0086 GTPase Rab4, small G p 98.6 1.8E-07 3.8E-12 87.1 8.8 115 19-163 9-127 (214)
304 PF00350 Dynamin_N: Dynamin fa 98.6 9.2E-08 2E-12 94.8 7.7 64 97-160 100-168 (168)
305 KOG0079 GTP-binding protein H- 98.6 2.7E-07 5.8E-12 85.5 9.4 113 21-163 10-125 (198)
306 KOG0395 Ras-related GTPase [Ge 98.6 1.7E-07 3.8E-12 95.2 8.8 114 19-163 3-121 (196)
307 COG5192 BMS1 GTP-binding prote 98.5 2.5E-07 5.4E-12 102.1 9.7 107 19-163 69-176 (1077)
308 KOG0075 GTP-binding ADP-ribosy 98.5 2.4E-07 5.3E-12 85.9 6.7 109 21-163 22-135 (186)
309 PF04548 AIG1: AIG1 family; I 98.4 4.1E-06 8.8E-11 86.6 14.4 113 20-163 1-129 (212)
310 KOG0093 GTPase Rab3, small G p 98.4 2.2E-06 4.7E-11 79.6 10.4 115 19-163 21-139 (193)
311 KOG0088 GTPase Rab21, small G 98.4 2.2E-07 4.8E-12 87.0 3.0 115 19-163 13-131 (218)
312 PRK13768 GTPase; Provisional 98.3 1.1E-06 2.5E-11 93.2 8.5 66 98-163 97-175 (253)
313 KOG0071 GTP-binding ADP-ribosy 98.3 3.5E-06 7.5E-11 77.7 10.3 109 20-163 18-131 (180)
314 COG1163 DRG Predicted GTPase [ 98.3 1.3E-06 2.9E-11 91.9 7.5 111 19-162 63-185 (365)
315 KOG0076 GTP-binding ADP-ribosy 98.3 9.9E-07 2.1E-11 84.5 6.0 129 6-163 5-139 (197)
316 PRK09435 membrane ATPase/prote 98.3 3.6E-06 7.8E-11 92.0 11.2 60 95-163 146-207 (332)
317 PF00735 Septin: Septin; Inte 98.3 1.1E-05 2.4E-10 86.7 14.6 138 20-184 5-170 (281)
318 KOG0074 GTP-binding ADP-ribosy 98.3 3.8E-06 8.2E-11 77.6 9.3 113 17-163 15-132 (185)
319 KOG1532 GTPase XAB1, interacts 98.3 1.4E-06 3.1E-11 89.2 6.7 87 97-183 115-214 (366)
320 PF05049 IIGP: Interferon-indu 98.3 2.7E-06 5.8E-11 93.6 9.3 123 8-163 23-154 (376)
321 COG4917 EutP Ethanolamine util 98.2 1.7E-06 3.6E-11 78.5 5.7 98 20-163 2-103 (148)
322 PTZ00258 GTP-binding protein; 98.2 3.9E-06 8.4E-11 93.5 9.6 104 13-132 15-126 (390)
323 KOG0077 Vesicle coat complex C 98.2 7.7E-06 1.7E-10 77.9 9.7 121 11-170 12-137 (193)
324 cd01900 YchF YchF subfamily. 98.2 3.3E-06 7.2E-11 90.0 7.8 96 22-133 1-104 (274)
325 cd01342 Translation_Factor_II_ 98.2 7.4E-06 1.6E-10 70.0 8.6 71 377-459 2-72 (83)
326 KOG3883 Ras family small GTPas 98.2 1.4E-05 3.1E-10 74.9 10.4 117 18-163 8-131 (198)
327 PTZ00099 rab6; Provisional 98.1 8.8E-06 1.9E-10 81.5 9.5 68 96-163 27-98 (176)
328 COG0536 Obg Predicted GTPase [ 98.1 1.6E-05 3.5E-10 84.6 11.7 110 19-163 159-288 (369)
329 KOG2486 Predicted GTPase [Gene 98.1 7.3E-06 1.6E-10 84.6 8.7 113 19-163 136-261 (320)
330 PF03029 ATP_bind_1: Conserved 98.1 3.3E-07 7.2E-12 96.1 -1.0 65 99-163 92-169 (238)
331 KOG4252 GTP-binding protein [S 98.1 1.7E-06 3.8E-11 82.8 3.7 117 17-163 18-137 (246)
332 PRK09601 GTP-binding protein Y 98.1 8.6E-06 1.9E-10 89.7 9.3 98 20-133 3-108 (364)
333 TIGR00993 3a0901s04IAP86 chlor 98.1 4.2E-05 9E-10 88.6 14.9 114 19-163 118-249 (763)
334 KOG1954 Endocytosis/signaling 98.1 2.5E-05 5.5E-10 83.1 11.5 153 19-180 58-235 (532)
335 KOG0097 GTPase Rab14, small G 98.1 3.1E-05 6.6E-10 71.2 10.3 116 18-163 10-129 (215)
336 TIGR00073 hypB hydrogenase acc 98.1 1.1E-05 2.5E-10 83.0 8.3 137 16-163 19-161 (207)
337 PRK14722 flhF flagellar biosyn 98.0 9.7E-06 2.1E-10 89.8 8.0 135 19-163 137-294 (374)
338 TIGR00750 lao LAO/AO transport 98.0 2E-05 4.4E-10 85.9 9.0 61 96-163 125-185 (300)
339 cd01899 Ygr210 Ygr210 subfamil 98.0 1.9E-05 4E-10 86.4 8.5 38 96-133 67-111 (318)
340 PF03193 DUF258: Protein of un 98.0 4.8E-06 1E-10 81.1 3.3 35 7-42 24-58 (161)
341 PRK09602 translation-associate 97.9 2.7E-05 6E-10 87.6 9.4 98 20-133 2-114 (396)
342 COG5019 CDC3 Septin family pro 97.9 0.00015 3.2E-09 78.4 14.3 145 17-186 21-195 (373)
343 KOG1490 GTP-binding protein CR 97.9 3.8E-05 8.3E-10 85.0 8.5 114 17-163 166-294 (620)
344 cd01858 NGP_1 NGP-1. Autoanti 97.8 3.4E-05 7.4E-10 75.7 6.2 28 19-46 102-129 (157)
345 KOG0081 GTPase Rab27, small G 97.8 3.7E-05 7.9E-10 72.4 5.9 67 97-163 66-137 (219)
346 cd03114 ArgK-like The function 97.8 7.6E-05 1.6E-09 72.5 8.4 59 96-161 90-148 (148)
347 cd03115 SRP The signal recogni 97.8 0.00011 2.5E-09 73.2 9.9 66 96-163 81-152 (173)
348 cd03110 Fer4_NifH_child This p 97.8 0.0004 8.8E-09 69.6 13.4 66 96-163 91-156 (179)
349 KOG2655 Septin family protein 97.7 0.00034 7.4E-09 76.2 13.0 123 19-163 21-171 (366)
350 KOG0072 GTP-binding ADP-ribosy 97.7 5.7E-05 1.2E-09 70.2 5.9 121 7-163 7-132 (182)
351 PF03308 ArgK: ArgK protein; 97.7 3E-05 6.6E-10 80.4 4.1 161 8-183 18-194 (266)
352 TIGR01425 SRP54_euk signal rec 97.7 0.0002 4.3E-09 80.8 10.8 66 96-163 181-252 (429)
353 KOG0083 GTPase Rab26/Rab37, sm 97.7 3.7E-05 8.1E-10 70.2 3.8 70 94-163 43-116 (192)
354 cd03698 eRF3_II_like eRF3_II_l 97.7 0.00034 7.4E-09 60.8 9.8 69 375-458 1-71 (83)
355 KOG1707 Predicted Ras related/ 97.7 0.00016 3.4E-09 81.9 9.5 111 21-163 11-128 (625)
356 KOG0091 GTPase Rab39, small G 97.7 0.00015 3.2E-09 68.9 7.8 110 20-163 9-129 (213)
357 KOG1547 Septin CDC10 and relat 97.7 0.0015 3.3E-08 66.2 15.3 124 18-163 45-197 (336)
358 PRK10416 signal recognition pa 97.6 0.00033 7.2E-09 76.7 11.5 130 19-163 114-272 (318)
359 cd04178 Nucleostemin_like Nucl 97.6 9.9E-05 2.2E-09 73.5 6.8 24 20-43 118-141 (172)
360 cd03112 CobW_like The function 97.6 0.00026 5.7E-09 69.6 9.2 63 97-162 86-158 (158)
361 cd03693 EF1_alpha_II EF1_alpha 97.6 0.00046 9.9E-09 61.1 9.6 84 373-470 2-88 (91)
362 KOG0096 GTPase Ran/TC4/GSP1 (n 97.6 0.00018 3.9E-09 70.3 7.3 116 18-163 9-127 (216)
363 TIGR00064 ftsY signal recognit 97.6 0.00039 8.5E-09 74.5 10.6 132 18-163 71-230 (272)
364 cd01849 YlqF_related_GTPase Yl 97.5 0.00015 3.2E-09 71.0 6.0 27 18-44 99-125 (155)
365 KOG3886 GTP-binding protein [S 97.5 0.00028 6.1E-09 71.1 7.8 115 19-163 4-129 (295)
366 PRK00771 signal recognition pa 97.5 0.00021 4.6E-09 81.2 7.8 61 98-163 176-245 (437)
367 PRK11889 flhF flagellar biosyn 97.5 0.00021 4.6E-09 78.8 7.0 137 18-163 240-390 (436)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00018 3.8E-09 69.3 5.8 23 20-42 84-106 (141)
369 PF00448 SRP54: SRP54-type pro 97.4 0.00026 5.7E-09 72.1 7.0 66 96-163 82-153 (196)
370 cd01851 GBP Guanylate-binding 97.4 0.00038 8.3E-09 72.5 7.8 91 17-133 5-103 (224)
371 cd01855 YqeH YqeH. YqeH is an 97.4 0.00028 6E-09 71.6 6.5 25 19-43 127-151 (190)
372 PRK12288 GTPase RsgA; Reviewed 97.4 0.00019 4.2E-09 79.4 5.5 24 21-44 207-230 (347)
373 COG1703 ArgK Putative periplas 97.4 0.00044 9.5E-09 72.8 7.7 162 7-183 39-216 (323)
374 TIGR00157 ribosome small subun 97.4 0.00028 6.2E-09 74.5 6.4 24 20-43 121-144 (245)
375 PRK12289 GTPase RsgA; Reviewed 97.4 0.00021 4.5E-09 79.2 5.5 24 21-44 174-197 (352)
376 KOG0448 Mitofusin 1 GTPase, in 97.4 0.0019 4E-08 74.7 13.0 63 99-163 207-274 (749)
377 PRK12727 flagellar biosynthesi 97.4 0.00086 1.9E-08 76.9 10.3 64 97-163 428-497 (559)
378 cd01859 MJ1464 MJ1464. This f 97.3 0.00056 1.2E-08 66.9 7.2 25 17-41 99-123 (156)
379 TIGR03597 GTPase_YqeH ribosome 97.3 0.00045 9.7E-09 77.3 7.3 25 20-44 155-179 (360)
380 TIGR00101 ureG urease accessor 97.3 0.00059 1.3E-08 69.7 7.3 58 97-163 91-150 (199)
381 cd02036 MinD Bacterial cell di 97.3 0.0025 5.4E-08 63.5 11.7 63 99-163 64-127 (179)
382 PRK14974 cell division protein 97.3 0.0007 1.5E-08 74.5 8.2 62 97-163 222-292 (336)
383 TIGR03596 GTPase_YlqF ribosome 97.2 0.00066 1.4E-08 73.1 7.6 24 19-42 118-141 (276)
384 PRK12726 flagellar biosynthesi 97.2 0.0005 1.1E-08 75.7 6.6 25 18-42 205-229 (407)
385 COG1162 Predicted GTPases [Gen 97.2 0.0003 6.6E-09 74.8 4.7 22 20-41 165-186 (301)
386 KOG0393 Ras-related small GTPa 97.2 0.00027 5.8E-09 70.9 4.0 115 19-163 4-122 (198)
387 PRK09563 rbgA GTPase YlqF; Rev 97.2 0.00056 1.2E-08 74.2 6.6 25 19-43 121-145 (287)
388 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00045 9.8E-09 74.8 5.8 24 20-43 162-185 (287)
389 PRK10867 signal recognition pa 97.2 0.0013 2.8E-08 74.8 9.3 63 96-163 182-253 (433)
390 cd02038 FleN-like FleN is a me 97.2 0.0028 6E-08 60.8 10.4 79 98-183 45-125 (139)
391 KOG0410 Predicted GTP binding 97.2 0.00097 2.1E-08 70.5 7.4 115 18-163 177-307 (410)
392 COG0012 Predicted GTPase, prob 97.1 0.00091 2E-08 72.9 7.1 98 20-133 3-109 (372)
393 cd01856 YlqF YlqF. Proteins o 97.1 0.00084 1.8E-08 66.8 6.5 24 19-42 115-138 (171)
394 COG1161 Predicted GTPases [Gen 97.1 0.00081 1.7E-08 73.9 6.7 57 19-109 132-188 (322)
395 TIGR00959 ffh signal recogniti 97.1 0.00068 1.5E-08 77.0 6.2 65 96-163 181-252 (428)
396 cd04089 eRF3_II eRF3_II: domai 97.1 0.0046 1E-07 53.5 10.0 65 375-455 1-65 (82)
397 COG0523 Putative GTPases (G3E 97.1 0.003 6.6E-08 69.0 10.4 156 20-188 2-176 (323)
398 PRK13796 GTPase YqeH; Provisio 97.1 0.00099 2.2E-08 74.6 6.8 25 19-43 160-184 (365)
399 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0011 2.4E-08 63.7 5.8 52 112-163 2-55 (141)
400 TIGR00092 GTP-binding protein 97.0 0.0021 4.5E-08 71.1 8.4 98 20-133 3-109 (368)
401 PRK00098 GTPase RsgA; Reviewed 96.9 0.0014 2.9E-08 71.5 5.6 23 20-42 165-187 (298)
402 PRK10463 hydrogenase nickel in 96.9 0.0022 4.8E-08 68.6 7.0 26 17-42 102-127 (290)
403 PRK14721 flhF flagellar biosyn 96.8 0.0015 3.3E-08 73.7 6.0 24 19-42 191-214 (420)
404 cd03694 GTPBP_II Domain II of 96.7 0.012 2.6E-07 51.5 9.7 59 387-455 12-70 (87)
405 cd03111 CpaE_like This protein 96.7 0.012 2.5E-07 53.7 9.8 59 99-159 44-106 (106)
406 KOG1486 GTP-binding protein DR 96.7 0.0033 7.1E-08 64.2 6.6 83 20-134 63-152 (364)
407 PRK05703 flhF flagellar biosyn 96.7 0.0035 7.7E-08 71.5 7.7 65 97-163 299-370 (424)
408 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0013 2.8E-08 66.1 3.5 82 97-187 84-172 (178)
409 PRK06731 flhF flagellar biosyn 96.7 0.004 8.7E-08 66.5 7.3 63 97-163 154-224 (270)
410 PRK12724 flagellar biosynthesi 96.7 0.0017 3.7E-08 72.7 4.6 65 96-163 298-372 (432)
411 COG0541 Ffh Signal recognition 96.7 0.0036 7.7E-08 69.4 6.9 151 7-162 80-251 (451)
412 cd01858 NGP_1 NGP-1. Autoanti 96.6 0.0021 4.6E-08 62.9 4.7 49 115-163 2-52 (157)
413 PRK06995 flhF flagellar biosyn 96.6 0.0058 1.3E-07 70.2 8.1 24 19-42 256-279 (484)
414 cd02042 ParA ParA and ParB of 96.6 0.014 3.1E-07 52.6 9.2 80 22-143 2-83 (104)
415 cd01859 MJ1464 MJ1464. This f 96.6 0.0036 7.8E-08 61.2 5.6 50 114-163 5-54 (156)
416 KOG1491 Predicted GTP-binding 96.5 0.0064 1.4E-07 65.0 7.6 107 11-133 12-126 (391)
417 cd02037 MRP-like MRP (Multiple 96.5 0.0055 1.2E-07 60.8 6.9 66 96-163 66-134 (169)
418 PRK11537 putative GTP-binding 96.5 0.014 3.1E-07 63.9 10.5 139 18-163 3-163 (318)
419 KOG1673 Ras GTPases [General f 96.5 0.0084 1.8E-07 56.8 7.1 116 19-164 20-138 (205)
420 PRK12723 flagellar biosynthesi 96.5 0.0057 1.2E-07 68.6 7.2 66 96-163 253-325 (388)
421 cd03697 EFTU_II EFTU_II: Elong 96.4 0.014 3E-07 51.1 8.1 57 387-455 12-68 (87)
422 PRK14723 flhF flagellar biosyn 96.4 0.0024 5.2E-08 76.7 4.0 24 19-42 185-208 (767)
423 KOG1534 Putative transcription 96.4 0.0036 7.7E-08 62.5 4.4 66 97-163 97-177 (273)
424 TIGR02475 CobW cobalamin biosy 96.4 0.018 3.9E-07 63.9 10.5 25 18-42 3-27 (341)
425 COG3640 CooC CO dehydrogenase 96.4 0.0059 1.3E-07 62.4 5.9 65 96-163 132-198 (255)
426 PRK13849 putative crown gall t 96.3 0.01 2.2E-07 62.2 7.7 64 96-161 82-151 (231)
427 cd00066 G-alpha G protein alph 96.3 0.0082 1.8E-07 66.0 7.3 68 96-163 159-241 (317)
428 TIGR00257 IMPACT_YIGZ uncharac 96.3 0.029 6.2E-07 57.1 10.6 112 679-796 89-200 (204)
429 KOG2485 Conserved ATP/GTP bind 96.3 0.012 2.7E-07 62.3 7.8 64 18-108 142-206 (335)
430 COG1419 FlhF Flagellar GTP-bin 96.3 0.0084 1.8E-07 66.4 6.8 132 18-163 202-351 (407)
431 cd03696 selB_II selB_II: this 96.2 0.025 5.5E-07 49.0 8.4 62 380-455 5-66 (83)
432 cd03688 eIF2_gamma_II eIF2_gam 96.2 0.024 5.2E-07 51.2 8.2 90 373-467 3-104 (113)
433 TIGR03596 GTPase_YlqF ribosome 96.2 0.0053 1.1E-07 66.2 4.9 56 106-163 5-61 (276)
434 PRK11568 hypothetical protein; 96.2 0.039 8.3E-07 56.2 10.7 112 679-796 89-200 (204)
435 smart00275 G_alpha G protein a 96.2 0.014 3.1E-07 64.8 8.1 67 97-163 183-264 (342)
436 cd01856 YlqF YlqF. Proteins o 96.1 0.0055 1.2E-07 61.0 4.3 56 106-163 3-59 (171)
437 cd03695 CysN_NodQ_II CysN_NodQ 96.1 0.036 7.8E-07 47.8 8.5 50 393-455 17-66 (81)
438 PRK13695 putative NTPase; Prov 95.9 0.016 3.5E-07 57.8 6.4 39 120-160 95-136 (174)
439 TIGR03348 VI_IcmF type VI secr 95.9 0.02 4.3E-07 73.8 8.7 44 120-163 200-256 (1169)
440 cd03692 mtIF2_IVc mtIF2_IVc: t 95.7 0.065 1.4E-06 46.6 8.6 57 388-455 13-69 (84)
441 KOG2423 Nucleolar GTPase [Gene 95.6 0.0099 2.1E-07 64.5 3.4 37 17-53 305-341 (572)
442 TIGR03371 cellulose_yhjQ cellu 95.5 0.095 2.1E-06 55.2 10.9 64 98-163 115-181 (246)
443 PRK01889 GTPase RsgA; Reviewed 95.5 0.015 3.3E-07 64.9 4.9 25 20-44 196-220 (356)
444 PRK09563 rbgA GTPase YlqF; Rev 95.4 0.013 2.8E-07 63.5 4.0 57 105-163 7-64 (287)
445 KOG1424 Predicted GTP-binding 95.4 0.012 2.6E-07 66.2 3.5 25 19-43 314-338 (562)
446 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.1 2.2E-06 45.6 8.9 76 22-141 2-78 (99)
447 cd04178 Nucleostemin_like Nucl 95.3 0.036 7.7E-07 55.3 6.4 41 123-163 1-43 (172)
448 cd01855 YqeH YqeH. YqeH is an 95.3 0.018 4E-07 58.2 4.3 56 106-163 19-74 (190)
449 KOG0447 Dynamin-like GTP bindi 95.1 0.24 5.1E-06 56.1 12.3 145 17-183 306-507 (980)
450 cd02032 Bchl_like This family 95.1 0.078 1.7E-06 56.8 8.5 65 97-162 115-184 (267)
451 KOG0780 Signal recognition par 95.0 0.036 7.9E-07 60.3 5.6 137 19-163 101-253 (483)
452 PRK14493 putative bifunctional 94.9 0.056 1.2E-06 58.0 6.9 23 20-42 2-24 (274)
453 KOG2484 GTPase [General functi 94.9 0.021 4.6E-07 62.4 3.5 56 19-108 252-307 (435)
454 cd01849 YlqF_related_GTPase Yl 94.9 0.032 6.8E-07 54.5 4.5 41 123-163 1-42 (155)
455 KOG2743 Cobalamin synthesis pr 94.9 0.12 2.6E-06 54.6 8.8 156 17-190 55-244 (391)
456 cd02117 NifH_like This family 94.9 0.11 2.3E-06 53.7 8.7 66 96-162 115-187 (212)
457 COG0552 FtsY Signal recognitio 94.8 0.038 8.3E-07 59.6 5.0 135 18-162 138-296 (340)
458 cd03702 IF2_mtIF2_II This fami 94.7 0.17 3.7E-06 45.0 8.2 68 378-460 3-70 (95)
459 PF06858 NOG1: Nucleolar GTP-b 94.7 0.072 1.6E-06 42.3 5.0 49 113-161 4-58 (58)
460 KOG3887 Predicted small GTPase 94.6 0.08 1.7E-06 54.1 6.4 112 21-163 29-148 (347)
461 PF09547 Spore_IV_A: Stage IV 94.2 0.7 1.5E-05 51.6 13.3 138 9-161 7-191 (492)
462 cd02040 NifH NifH gene encodes 94.2 0.16 3.4E-06 54.3 8.5 38 96-133 115-153 (270)
463 PF13555 AAA_29: P-loop contai 94.2 0.049 1.1E-06 44.2 3.3 21 21-41 25-45 (62)
464 TIGR03597 GTPase_YqeH ribosome 94.2 0.11 2.4E-06 58.2 7.3 53 109-163 51-103 (360)
465 CHL00072 chlL photochlorophyll 94.1 0.26 5.7E-06 53.5 10.0 64 97-161 115-183 (290)
466 PF05621 TniB: Bacterial TniB 94.1 0.41 8.9E-06 51.5 11.0 37 7-43 47-85 (302)
467 COG1618 Predicted nucleotide k 94.0 0.41 9E-06 46.4 9.5 49 113-163 92-143 (179)
468 TIGR01007 eps_fam capsular exo 93.9 0.13 2.9E-06 52.5 6.9 67 96-163 126-193 (204)
469 KOG4423 GTP-binding protein-li 93.8 0.0035 7.6E-08 61.2 -4.7 117 16-163 22-148 (229)
470 TIGR01281 DPOR_bchL light-inde 93.7 0.29 6.3E-06 52.4 9.2 66 96-162 114-184 (268)
471 KOG1487 GTP-binding protein DR 93.6 0.068 1.5E-06 55.2 3.9 110 20-163 60-182 (358)
472 PRK05800 cobU adenosylcobinami 93.6 0.31 6.7E-06 48.4 8.5 140 21-194 3-156 (170)
473 PRK13230 nitrogenase reductase 93.4 0.15 3.2E-06 55.1 6.4 37 97-133 116-153 (279)
474 PF07015 VirC1: VirC1 protein; 93.4 0.43 9.3E-06 49.4 9.2 64 96-161 82-151 (231)
475 KOG3022 Predicted ATPase, nucl 93.3 0.57 1.2E-05 49.3 10.0 73 89-162 148-222 (300)
476 KOG1533 Predicted GTPase [Gene 93.3 0.064 1.4E-06 54.7 3.0 68 96-163 95-176 (290)
477 PRK08099 bifunctional DNA-bind 93.3 0.069 1.5E-06 60.5 3.7 31 16-46 216-246 (399)
478 PRK08118 topology modulation p 93.1 0.084 1.8E-06 52.3 3.6 25 20-44 2-26 (167)
479 PRK13232 nifH nitrogenase redu 93.1 0.31 6.7E-06 52.4 8.3 66 96-161 115-185 (273)
480 PF13207 AAA_17: AAA domain; P 93.1 0.098 2.1E-06 48.4 3.8 24 21-44 1-24 (121)
481 KOG4181 Uncharacterized conser 93.0 0.87 1.9E-05 49.1 11.0 35 7-41 176-210 (491)
482 cd03116 MobB Molybdenum is an 93.0 0.27 5.8E-06 48.3 6.9 23 20-42 2-24 (159)
483 cd03701 IF2_IF5B_II IF2_IF5B_I 93.0 0.49 1.1E-05 42.1 8.0 67 379-460 4-70 (95)
484 COG1116 TauB ABC-type nitrate/ 93.0 0.13 2.8E-06 53.5 4.8 19 21-39 31-49 (248)
485 COG1136 SalX ABC-type antimicr 92.9 0.096 2.1E-06 54.1 3.7 19 21-39 33-51 (226)
486 COG3523 IcmF Type VI protein s 92.8 0.23 5E-06 62.6 7.5 66 98-163 174-269 (1188)
487 PRK12289 GTPase RsgA; Reviewed 92.6 0.16 3.4E-06 56.5 5.3 47 117-163 85-133 (352)
488 KOG2484 GTPase [General functi 92.6 0.33 7.1E-06 53.5 7.4 64 100-163 124-190 (435)
489 COG0563 Adk Adenylate kinase a 92.5 0.11 2.4E-06 52.0 3.6 26 21-46 2-27 (178)
490 PHA00729 NTP-binding motif con 92.5 0.14 3.1E-06 52.9 4.5 42 1-44 1-42 (226)
491 TIGR02858 spore_III_AA stage I 92.5 1.1 2.3E-05 48.1 11.2 25 17-41 109-133 (270)
492 PRK13231 nitrogenase reductase 92.5 0.69 1.5E-05 49.4 9.9 65 97-161 113-179 (264)
493 COG1126 GlnQ ABC-type polar am 92.4 0.093 2E-06 53.3 2.8 20 20-39 29-48 (240)
494 PF03205 MobB: Molybdopterin g 92.3 0.13 2.9E-06 49.3 3.7 23 21-43 2-24 (140)
495 PRK01889 GTPase RsgA; Reviewed 92.3 0.27 5.9E-06 55.0 6.7 45 119-163 110-155 (356)
496 cd03238 ABC_UvrA The excision 92.1 0.13 2.8E-06 51.5 3.5 23 19-41 21-43 (176)
497 cd02019 NK Nucleoside/nucleoti 92.1 0.13 2.7E-06 42.9 2.9 21 22-42 2-22 (69)
498 PRK07261 topology modulation p 92.1 0.14 3E-06 51.0 3.6 23 21-43 2-24 (171)
499 cd01130 VirB11-like_ATPase Typ 92.0 0.16 3.6E-06 51.2 4.1 25 18-42 24-48 (186)
500 PF13671 AAA_33: AAA domain; P 92.0 0.15 3.3E-06 48.6 3.6 23 22-44 2-24 (143)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-181 Score=1421.20 Aligned_cols=839 Identities=67% Similarity=1.100 Sum_probs=818.5
Q ss_pred CcccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe
Q 003165 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|+++..++++.+|.+..++||+.+++|+|||||||+++|..++|+|+...+|.+|++|++++||+|||||+++.+++.++
T Consensus 1 Mv~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 1 MVAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred CccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhh
Confidence 88999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKi 160 (843)
.....++.+....++.+..|||||+|||+||++|+..|||+.|||++|||+++|++.||+++++||..+++++++|+|||
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~ 160 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKM 160 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehh
Confidence 87777777777788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHH
Q 003165 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
||.++|+..+.++.|+.++++++.+|.+++.|.+.++|...+.|..|+|.|+||++||+||+.|||.+|.+||+++..+|
T Consensus 161 DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~km 240 (842)
T KOG0469|consen 161 DRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKM 240 (842)
T ss_pred hHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceeecC---CCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHH
Q 003165 241 MERLWGENFFDPATKKWTTKN---TGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKAL 317 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l 317 (843)
+.+|||+.|+++++++|.++. +++ .+++.|+.++|+|||++++++++...+.+-.+|+.+++.+..++....+++|
T Consensus 241 m~~LWg~~~f~~ktkk~~~s~t~~~gn-~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~L 319 (842)
T KOG0469|consen 241 MNRLWGDNFFNPKTKKWSKSATDAEGN-PLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKAL 319 (842)
T ss_pred HHHhhcccccCccCCcccccccccccC-ccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHH
Confidence 999999999999999999765 233 7789999999999999999999999999999999999999999998889999
Q ss_pred HHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeee
Q 003165 318 MKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGR 397 (843)
Q Consensus 318 ~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~R 397 (843)
++.+|++|+|...+||++|.-+||||..+|+||...+|.||.+|+.+-+|++||+++|+++||+|+.+..+.|+|++|+|
T Consensus 320 lK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGR 399 (842)
T KOG0469|consen 320 LKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_pred HHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCCCccc
Q 003165 398 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHP 477 (843)
Q Consensus 398 V~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~~~~~ 477 (843)
||||++.+|+.+++.||||.+|++++.+...|.+..+|||+..++++.++||||+++.|+++++.+|||+++.+ ..+.
T Consensus 400 VFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e--~AHN 477 (842)
T KOG0469|consen 400 VFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSE--AAHN 477 (842)
T ss_pred eecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehh--hhcc
Confidence 99999999999999999999999988887889999999999999999999999999999999999999999988 7889
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcEEEE
Q 003165 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 557 (843)
Q Consensus 478 ~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 557 (843)
++.++|+.+||+.+|||++++.|++||.++|++|+++||.+.+..+|+||++|.|.||||||||+++|++.|| +|.++.
T Consensus 478 mrvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA-~iPlk~ 556 (842)
T KOG0469|consen 478 MRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHA-CIPLKK 556 (842)
T ss_pred ceEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhccc-CCceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEe
Q 003165 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCF 637 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 637 (843)
|+|.|+||||+.+.++..+.++|+|+||++|++++||++++.+.|++|..+++|++|.|..+|.+.|+||-+++++||||
T Consensus 557 sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCf 636 (842)
T KOG0469|consen 557 SDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCF 636 (842)
T ss_pred CCCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHH
Q 003165 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 638 ~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 717 (843)
||+..|+|+++|.++|.+|+++++++|..|||||.++|||+++.++|++|.|.|..+|.|.+|++.+|+++.+|++|+++
T Consensus 637 gPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~ 716 (842)
T KOG0469|consen 637 GPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYAS 716 (842)
T ss_pred CCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
++.|+|+|+||+|.|||+||++++|.||++|++|||++.+++...|+++|.|+|++|+.|||||..+|||.|.|+|.+||
T Consensus 717 ~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~ 796 (842)
T KOG0469|consen 717 VLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQM 796 (842)
T ss_pred HHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003165 798 VFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843 (843)
Q Consensus 798 ~f~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
.|+||+++|+||+|+++..-+++.++||||||.|.+|.+.+|.|||
T Consensus 797 vFdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 797 VFDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred eeeccccCCCCCCCCCccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 9999999999999999999999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=3.6e-157 Score=1422.34 Aligned_cols=843 Identities=95% Similarity=1.449 Sum_probs=765.5
Q ss_pred CcccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe
Q 003165 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|.+++.++|.++|+++++||||||+||+|||||||+++|++.+|.+.+...|.++++|+.++|++||+|++++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 1 MVKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred CCccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEee
Confidence 78899999999999999999999999999999999999999999998887888889999999999999999999999996
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKi 160 (843)
.....++......+.+++.|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+|+++...++|+++|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 32211111111124457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHH
Q 003165 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|+++++++.+++++|.+++++++++|.++..+..+..+.++|+|..+||.|+|+++||+|++++|+.+|+.+|+++.+.+
T Consensus 161 D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l 240 (843)
T PLN00116 161 DRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
T ss_pred cccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999888877655555678999999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHH
Q 003165 241 MERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 320 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
.+++||++||+++++++...+.......+.|++++++|+|+|++++++.|++++++||++++++++++|+..+.+++++.
T Consensus 241 ~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
T PLN00116 241 MERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKR 320 (843)
T ss_pred HHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHH
Confidence 99999999999888777655411113467899999999999999999999999999999988899999998788999999
Q ss_pred HHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEe
Q 003165 321 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 321 i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~S 400 (843)
++..|+|.+++|||+|++|+|||.+++..++..+|+++.+++...+++.||+++|++|+|||+.++++.|++++|+||||
T Consensus 321 ~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVys 400 (843)
T PLN00116 321 VMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
T ss_pred HHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEe
Confidence 99999999999999999999999998888888877764444445678899999999999999999888887899999999
Q ss_pred eEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCCCcccccc
Q 003165 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRA 480 (843)
Q Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~~~~~~~~ 480 (843)
|+|++||.||++|+|++++++++...++|++||.++|++.++|++|+|||||+|.|++++.++++||++.....+.++++
T Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~ 480 (843)
T PLN00116 401 GTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKA 480 (843)
T ss_pred eeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccc
Confidence 99999999999999887765554555799999999999999999999999999999998755555998764112456677
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcEEEEecc
Q 003165 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 481 ~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
+.++++|+++++|||.+++|++||.+||++|.+|||+|++..++|||++|+||||+|||+|++||+++|+++|++++|+|
T Consensus 481 ~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p 560 (843)
T PLN00116 481 MKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDP 560 (843)
T ss_pred cccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCC
Confidence 77755999999999999999999999999999999999997779999999999999999999999999954699999999
Q ss_pred EEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccC
Q 003165 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPE 640 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~ 640 (843)
+|+|||||.++++..+..+.+++|++++++++|++.++.+.|+.+.+...++.+.+...+...|+|+...++++|+|||+
T Consensus 561 ~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~ 640 (843)
T PLN00116 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPE 640 (843)
T ss_pred eEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCC
Confidence 99999999998765555567889999999999999998888888877656666555666777899999999999999998
Q ss_pred CCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHh
Q 003165 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLT 720 (843)
Q Consensus 641 ~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~ 720 (843)
..|+|+|++++.|.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++||++
T Consensus 641 ~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~ 720 (843)
T PLN00116 641 TTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLT 720 (843)
T ss_pred CCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999999998888888889999999999999999
Q ss_pred cCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEec
Q 003165 721 AKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (843)
Q Consensus 721 a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~ 800 (843)
|+|+||||||+|||+||++++|+|++||++|||+|++++..+++..++|+|++|++|||||+++|||+|+|+|+|+|+|+
T Consensus 721 a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~ 800 (843)
T PLN00116 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFD 800 (843)
T ss_pred CCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999987776779999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003165 801 HWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843 (843)
Q Consensus 801 ~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
||++||+||||++|+|+++|.++||||||+|+||.+.+|+|||
T Consensus 801 ~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 801 HWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred eeEECCCCCCCchhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 9999999999999999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=4.4e-156 Score=1409.73 Aligned_cols=834 Identities=69% Similarity=1.131 Sum_probs=759.6
Q ss_pred CcccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe
Q 003165 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|.+++.+++.++|++++++|||+|+||+|||||||+++|++.+|.+++...|.++++|+.++|++||+||+++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 1 MVNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred CCccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEee
Confidence 77899999999999999999999999999999999999999999998877888889999999999999999999999886
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKi 160 (843)
... ....+++++.|||+|||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+|||
T Consensus 81 ~~~------~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 81 HDL------EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred ccc------ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 311 11223457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHH
Q 003165 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|+.+++++.++++++.+++++++++|..+..+..+......|+|.++||||+|+.+||+|++++|+..|+.+|+++...+
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l 234 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKM 234 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHH
Confidence 99999999999999999999999999998766544332356899999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceeecC-C-CcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHH
Q 003165 241 MERLWGENFFDPATKKWTTKN-T-GSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
.+++||++||+++++++...+ + .....++.|++++++|+|+|++++++.|++++++||+.+|+++++++++...+.|+
T Consensus 235 ~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~ 314 (836)
T PTZ00416 235 MERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLL 314 (836)
T ss_pred HHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHH
Confidence 999999999988887776543 1 21245789999999999999999999999999999999889999998755556899
Q ss_pred HHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
++++++|+|++++|||+|++|+|||.+++..+...+|.++.++.....++.||+++|++|+|||+.++++.|++++|+||
T Consensus 315 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV 394 (836)
T PTZ00416 315 KAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRV 394 (836)
T ss_pred HHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEE
Confidence 99999999999999999999999999888777776665543333345678999999999999999999998888899999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCCCcccc
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~~~~~~ 478 (843)
|||+|++||.||++|+|++.+++++....+|++||.++|++..+|++|+|||||+|.||++++++||||++.. .+.++
T Consensus 395 ~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~--~~~~l 472 (836)
T PTZ00416 395 FSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSE--TAHNI 472 (836)
T ss_pred EeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCC--Ccccc
Confidence 9999999999999999887665543333469999999999999999999999999999999667899998876 56677
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcEEEEe
Q 003165 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
.++.++++|+++++|||.+++|++||.+||++|.+|||+++++.++|||++|+||||+|||+|++||+++|+ +|++++|
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~-~vev~~s 551 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYA-NIDIIVS 551 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhc-CcceEec
Confidence 788776699999999999999999999999999999999999777999999999999999999999999997 8999999
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 638 (843)
+|+|+|||||.+.++..+.++.+++|++++++++||++++.+.++.+.+......+.+...+...|+|+...++++|+|+
T Consensus 552 ~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 552 DPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred CCEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 99999999999998877777888999999999999999988888887765444455444556668999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHH
Q 003165 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (843)
|...|+|+++|.+.+.+|.++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++||
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~ 711 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACE 711 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999987777778899999999999999
Q ss_pred HhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeE
Q 003165 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++||++|+|+|+|+|+
T Consensus 712 ~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 712 LTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred hhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999999887766799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003165 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843 (843)
Q Consensus 799 f~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
|+||++||+||||++|+|++||.++||||||++++|.+.+|+|||
T Consensus 792 F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 792 FDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred eccEEECCCCCCCchhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999999999999999999997
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-142 Score=1158.27 Aligned_cols=824 Identities=40% Similarity=0.713 Sum_probs=766.8
Q ss_pred ccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc-cCCceEeecCcccccccCeeEeeeeEEEEEee
Q 003165 3 KFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 3 ~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
.++.+++..+|+.+..+|||+++||-+||||+|.+.|...++.--+. .-...+++|.+..|++||+||++...++....
T Consensus 112 ~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D 191 (971)
T KOG0468|consen 112 VYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD 191 (971)
T ss_pred hhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec
Confidence 46889999999999999999999999999999999999887732211 11134799999999999999999998887652
Q ss_pred cccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCc
Q 003165 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD 161 (843)
.+++++.+|++|||||++|..|+.++++.+|+|++|||+.+|++.+|+.+++++.+.++|+++||||+|
T Consensus 192 -----------~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiD 260 (971)
T KOG0468|consen 192 -----------SKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVD 260 (971)
T ss_pred -----------CcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhH
Confidence 466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccC-CChHHH
Q 003165 162 RCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESKM 240 (843)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~-i~~~~l 240 (843)
|+++|++..|.++|.+++.+++++|..+.++... ...-++|+.|||+|+|+..|||||+.+||.+|...++ ++.+.+
T Consensus 261 RLilELkLPP~DAY~KLrHii~~iN~~is~~s~~--~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~F 338 (971)
T KOG0468|consen 261 RLILELKLPPMDAYYKLRHIIDEINNLISTFSKD--DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDF 338 (971)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhcchhhhcccc--cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhh
Confidence 9999999999999999999999999998877544 2345899999999999999999999999999998886 889999
Q ss_pred HHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHH
Q 003165 241 MERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKR 320 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
..++||+.||+.+|++|.+++... ...++|++|||+|+|+++..+....++.+...|.++|+.++.++++.+.+.|++-
T Consensus 339 a~RLWGdvYf~~ktrkF~kk~~~~-~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~l 417 (971)
T KOG0468|consen 339 AKRLWGDVYFHSKTRKFVKKPPDG-SGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRL 417 (971)
T ss_pred hhhhhccccccccccccccCCCCC-cccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHH
Confidence 999999999999999998876321 3467999999999999999999888889999999999999999999999999999
Q ss_pred HHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEe
Q 003165 321 VMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 321 i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~S 400 (843)
+.++|+.....+.|++++++|||.+....++...|.|+.+......+..|++++|++.++.|+++..+.-.|.+|+||+|
T Consensus 418 vc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~S 497 (971)
T KOG0468|consen 418 VCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYS 497 (971)
T ss_pred HHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeee
Confidence 99999999999999999999999998888888888887776667788999999999999999999888778999999999
Q ss_pred eEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCC-Cccccc
Q 003165 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEV-DAHPIR 479 (843)
Q Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~-~~~~~~ 479 (843)
|+++.|+.|.++|+|++....+++....|++++++.+++..+|.+|+||+++.|.|++..+.+|.|+++.+.. ....|+
T Consensus 498 g~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFr 577 (971)
T KOG0468|consen 498 GQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFR 577 (971)
T ss_pred cceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeecc
Confidence 9999999999999999887777777889999999999999999999999999999999999999999876532 345688
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcEEEEec
Q 003165 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 480 ~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
++.|.+.||+++++||.+|++++||.+||++.++.+|.+...++|+||++|.|.|||+|++++++||+-|+ .|++++++
T Consensus 578 pl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~ys-eieikvaD 656 (971)
T KOG0468|consen 578 PLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYS-EIEIKVAD 656 (971)
T ss_pred chhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHh-hhceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEecc
Q 003165 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGP 639 (843)
Q Consensus 560 p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P 639 (843)
|.|.|.||+.++++..|..+++++.|+|.|.+|||+..+.+.|++|.+....+.++..+++...|+||...+++||+|||
T Consensus 657 Pvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgp 736 (971)
T KOG0468|consen 657 PVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGP 736 (971)
T ss_pred ceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCC
Confidence 99999999999999999999999999999999999999999999988776777888889999999999999999999999
Q ss_pred CCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHH
Q 003165 640 ETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIY 715 (843)
Q Consensus 640 ~~~g~~~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~ 715 (843)
+..|+|+++|++- ..+.+..++++|.+||||++++||||+||+++|+|+|.|+.+.++..+++++|++++||++|+
T Consensus 737 d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Y 816 (971)
T KOG0468|consen 737 DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAY 816 (971)
T ss_pred CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHH
Confidence 9999999999984 456788889999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEe
Q 003165 716 ASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (843)
Q Consensus 716 ~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
.||..|.|+||||+|.|||++|.+.+..|+.+|++|||+|....+..|++.+.|+|++|+.|||||.++||-.|+|+|.|
T Consensus 817 safL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 817 SAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred HHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecceeecCCCCCCC------------chHHHHHHHHHHHhcCCCCCCCCccccccc
Q 003165 796 QCVFDHWDMMSSDPLEP------------GTQAAQLVADIRKRKGLKEQMTPLSEFEDK 842 (843)
Q Consensus 796 ~~~f~~y~~v~~~~~~~------------~~~a~~~~~~~r~rkGl~~~i~~~~~~~~~ 842 (843)
++.|.||++||+||+|+ +.+|++++-++||||||.|+ +...+|+|+
T Consensus 897 ~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsed-vS~~kffd~ 954 (971)
T KOG0468|consen 897 LSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSED-VSINKFFDD 954 (971)
T ss_pred HHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhcccccc-cccCcccch
Confidence 99999999999999985 57999999999999999999 477788874
No 5
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.2e-128 Score=1161.87 Aligned_cols=720 Identities=43% Similarity=0.721 Sum_probs=633.1
Q ss_pred CHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccc
Q 003165 5 TAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (843)
Q Consensus 5 ~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
.+++|.++|.+++++|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||||++++.+++.|..
T Consensus 6 ~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--- 82 (731)
T PRK07560 6 MVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--- 82 (731)
T ss_pred HHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe---
Confidence 47889999999999999999999999999999999999999988767778899999999999999999999998852
Q ss_pred ccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCcccc
Q 003165 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~ 164 (843)
+++++.+||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..
T Consensus 83 ---------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 ---------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred ---------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 23478999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCCC-CCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHH
Q 003165 165 LELQVDGEEAYQTFSRVVENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 243 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 243 (843)
.+++.++++++.++.+++++++.++..+..+.. ..+.+.|..++|.|+|+.++|+|+++.+.... +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~-------- 220 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I-------- 220 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C--------
Confidence 888889999999999999999988876543321 23457788999999999999999876432111 0
Q ss_pred hhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHh
Q 003165 244 LWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQ 323 (843)
Q Consensus 244 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~ 323 (843)
.| .+|++. |+++ +.+++ .
T Consensus 221 --------------------------~~--------~~l~e~-----------~~~~-----~~~~l------------~ 238 (731)
T PRK07560 221 --------------------------KF--------KDIIDY-----------YEKG-----KQKEL------------A 238 (731)
T ss_pred --------------------------CH--------HHHHHH-----------HhcC-----CHHHH------------H
Confidence 01 012222 2111 11222 3
Q ss_pred hhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEE
Q 003165 324 TWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 403 (843)
Q Consensus 324 ~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL 403 (843)
+|+|+.++|||+|++++|||.+++.++...+|.+...++....++.||+++|++|+|||+.++++.|. ++|+|||||+|
T Consensus 239 ~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL 317 (731)
T PRK07560 239 EKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTL 317 (731)
T ss_pred hhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEE
Confidence 57999999999999999999998888777777654333333467789999999999999999998886 99999999999
Q ss_pred ecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccccc
Q 003165 404 STGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMK 482 (843)
Q Consensus 404 ~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~ 482 (843)
++||.|++.+. +.+ ++|++|+.++|++..++++|+|||||+|.|++++ .+| ||++.. ...+++++.
T Consensus 318 ~~Gd~v~~~~~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~--~~~~~~~~~ 384 (731)
T PRK07560 318 RKGQEVYLVGA----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVE--DMTPFESLK 384 (731)
T ss_pred cCCCEEEEcCC----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCC--ccccccccc
Confidence 99999997642 222 7999999999999999999999999999999887 456 998776 566777775
Q ss_pred cCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccE
Q 003165 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 561 (843)
Q Consensus 483 ~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 561 (843)
+.++|+++++|+|.+++|++||.+||++|++|||+|+|.++ +|||++|+||||+|||++++||+++| ++++++++|+
T Consensus 385 ~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~ 462 (731)
T PRK07560 385 HISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPI 462 (731)
T ss_pred cCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCE
Confidence 44599999999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhh---hcCCchhccceEEEec
Q 003165 562 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSE---EFGWDKDLAKKIWCFG 638 (843)
Q Consensus 562 V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~---~~~~~~~~~~~v~~~~ 638 (843)
|+|||||.+.+. .+...++++|++++++++|++.+..+.++.|.....++.+.+ .+|.. ++||+..+++++|+++
T Consensus 463 V~yrETI~~~~~-~~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~ 540 (731)
T PRK07560 463 VVYRETVRGKSQ-VVEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY 540 (731)
T ss_pred EEEEEecccCcc-ceEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc
Confidence 999999998863 123457889999999999999988888888776544454444 55554 8999999999999983
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHH
Q 003165 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (843)
++|+|+|.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++||
T Consensus 541 ----~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~ 616 (731)
T PRK07560 541 ----NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAM 616 (731)
T ss_pred ----CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred HhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeE
Q 003165 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+ +.++|+|++|++|||||+++||++|+|+|+|+|+
T Consensus 617 ~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 694 (731)
T PRK07560 617 LTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTE 694 (731)
T ss_pred HhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999987643 5799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccc
Q 003165 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFED 841 (843)
Q Consensus 799 f~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~i~~~~~~~~ 841 (843)
|+||++||++ +|+++++++|+||||+++||.+++|+|
T Consensus 695 f~~y~~v~~~------~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 695 FAGFEPVPDS------LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred eccceeCCHH------HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 9999999975 699999999999999999999999986
No 6
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-127 Score=1114.72 Aligned_cols=669 Identities=35% Similarity=0.537 Sum_probs=561.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceE----eecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.+++|||+|+||+|||||||+++||+++|.+++ +|+++ ++|++++|++|||||+++.+++.|+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 678999999999999999999999999999998 78766 9999999999999999999999996
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCH
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (843)
.+++|||||||||+||..|+.++||++||||+|+||++|+++||+.+|+||.++++|+++|+|||||. +++.
T Consensus 74 ----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a~~ 145 (697)
T COG0480 74 ----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GADF 145 (697)
T ss_pred ----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----ccCh
Confidence 14999999999999999999999999999999999999999999999999999999999999999999 6653
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
....+.++ ..+.. .|...|+|+++. +.|| +|+..+..+.|++
T Consensus 146 ~~~~~~l~-------~~l~~-----------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~-- 189 (697)
T COG0480 146 YLVVEQLK-------ERLGA-----------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD-- 189 (697)
T ss_pred hhhHHHHH-------HHhCC-----------CceeeeccccCccccCce----------------eEhhhcCeEEEcC--
Confidence 33322222 22211 123335566552 4555 4556666677763
Q ss_pred cCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc
Q 003165 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
...-.|...| ....+...+-+.++++.+++.|++++++||++ .+++.+++. ++|++.++ ..++|+
T Consensus 190 --~~~~~~~~ip-------~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~pv 255 (697)
T COG0480 190 --GAKYEWIEIP-------ADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVPV 255 (697)
T ss_pred --CcccceeeCC-------HHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceeeE
Confidence 1111243222 11112222344578999999999999999998 678888876 56666655 456664
Q ss_pred ----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCcccccee-cccCCCCCeEEEEEEeeecCCCCcceeeee
Q 003165 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAI-RNCDPNGPLMLYVSKMIPASDKGRFFAFGR 397 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~plva~VfK~~~~~~~g~~l~~~R 397 (843)
++.|||++++|||+|.+.+.+. |..+++....+ ..+++++|++|+|||+..+++.|. ++|+|
T Consensus 256 l~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~------g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~R 328 (697)
T COG0480 256 LCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIK------GDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVR 328 (697)
T ss_pred EeeecccCCcHHHHHHHHHHHCCChhhccccc------ccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEEE
Confidence 8999999999999999987432 22222212222 234568999999999999999887 99999
Q ss_pred eEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcc
Q 003165 398 VFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAH 476 (843)
Q Consensus 398 V~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~ 476 (843)
||||+|++|+.+++.+ .+++ +||++|+.|+|.+++++++++|||||++.||+++ .+| |||+.. ...
T Consensus 329 vysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~--~~v 395 (697)
T COG0480 329 VYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDEN--KPV 395 (697)
T ss_pred EeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCC--Ccc
Confidence 9999999999999543 3333 8999999999999999999999999999999998 677 999876 567
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEE
Q 003165 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
Q Consensus 477 ~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v 555 (843)
.+..+.++ +||++++|+|++++|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| ||++
T Consensus 396 ~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Vev 472 (697)
T COG0480 396 ILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVEV 472 (697)
T ss_pred ccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--CceE
Confidence 88999998 99999999999999999999999999999999999997 99999999999999999999999999 9999
Q ss_pred EEeccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEE
Q 003165 556 IKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 635 (843)
Q Consensus 556 ~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 635 (843)
++++|+|+|||||.+.+.. .++|++ |+|+. +||+. ++
T Consensus 473 ~~~~PqV~YrETi~~~~~~------~~~~~k----------------qsgg~--------------~q~~~-------v~ 509 (697)
T COG0480 473 EVGKPQVAYRETIRKKSEV------EGKHKK----------------QSGGP--------------GQYGH-------VY 509 (697)
T ss_pred EecCCeeEEEEeecccccc------eeeeee----------------ccCCC--------------CcccE-------EE
Confidence 9999999999999988742 233333 33332 33332 33
Q ss_pred E-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHH
Q 003165 636 C-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRV 713 (843)
Q Consensus 636 ~-~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a 713 (843)
. ++|...| .+.|.+.+.|+.++.++++++.+||++|+++|||+||||+|++|+|.|+++|.+. ++..+|.+|+++|
T Consensus 510 i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~~~a 587 (697)
T COG0480 510 IEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAASLA 587 (697)
T ss_pred EEEEeCCCCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHHHHH
Confidence 2 4554433 5778888888889999999999999999999999999999999999999999732 3456788999999
Q ss_pred HHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCce
Q 003165 714 IYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQA 793 (843)
Q Consensus 714 ~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~ 793 (843)
|++|+.+|+|+||||||+|||++|++++|+|+++|++|||+|++++...++.++.|+|++|++|||||+++|||+|+|+|
T Consensus 588 ~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra 667 (697)
T COG0480 588 FKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRA 667 (697)
T ss_pred HHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCce
Confidence 99999999999999999999999999999999999999999999998866678999999999999999999999999999
Q ss_pred EeeeEecceeecCCCCCCCchHHHHHHHHHHHhcCC
Q 003165 794 FPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 829 (843)
Q Consensus 794 ~~~~~f~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl 829 (843)
+|+|+|+||++||.+ +|++++.++|+|||+
T Consensus 668 ~~~m~f~~y~~vp~~------~a~~ii~~~~~~~~~ 697 (697)
T COG0480 668 SFSMEFDHYEEVPSS------VAEEIIAKRRKRKGL 697 (697)
T ss_pred eEEEEecccEeCCHH------HHHHHHHHhhhhcCC
Confidence 999999999999965 699999999999986
No 7
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-128 Score=1074.44 Aligned_cols=802 Identities=37% Similarity=0.652 Sum_probs=680.4
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
...+.+|||++++|+|||||||+++|+..+|.|+++.+|+.|++|++++|+.||||++++.+++...
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------- 70 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------- 70 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC-------------
Confidence 3567899999999999999999999999999999999999999999999999999999999997664
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
++.+||||+|||+||.+++.+|.+.||+|+++||+++|++.||..+++|+|..+..+++|||||||++.|++++|.+
T Consensus 71 ---~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~e 147 (887)
T KOG0467|consen 71 ---DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQE 147 (887)
T ss_pred ---ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCC-----------CCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHH
Q 003165 174 AYQTFSRVVENANVIMATYEDP-----------LLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 242 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 242 (843)
+|.++-++++++|.++.+|... ....+.|.|.+|||.|+++.+||+|.+.+||++|.++.+.+...+.+
T Consensus 148 a~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k 227 (887)
T KOG0467|consen 148 AYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLK 227 (887)
T ss_pred HHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhh
Confidence 9999999999999999865211 00136899999999999999999999999999999999999999999
Q ss_pred HhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHH-HhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHH
Q 003165 243 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINT-CMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRV 321 (843)
Q Consensus 243 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~-~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 321 (843)
.+||++|++++++++.....-+ ..+++|.+++|+|+|++|+. +.+.|.+.+++....+|+.+.+++++ .++.++
T Consensus 228 ~lwgd~y~~~ktk~I~~~~~~~-grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~i 302 (887)
T KOG0467|consen 228 FLWGDRYIDPKTKRICEGKKLK-GRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAI 302 (887)
T ss_pred hhccceeecchhhhhhcccCcc-cCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHH
Confidence 9999999999988765443211 33899999999999999995 55668899999999999999888885 788999
Q ss_pred HhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCC---CccccceecccCCCCCeEEEEEEeeecCCCC----ccee
Q 003165 322 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPL---DDQYANAIRNCDPNGPLMLYVSKMIPASDKG----RFFA 394 (843)
Q Consensus 322 ~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~plva~VfK~~~~~~~g----~~l~ 394 (843)
|++|+|+.++.|-+++..+|+|.+.+..+...+...+. +.+...+++.|++++|.++||.|+...+.+. ++++
T Consensus 303 m~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~ 382 (887)
T KOG0467|consen 303 MSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLA 382 (887)
T ss_pred HHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhee
Confidence 99999999999999999999999999999887765321 1223456677999999999999998755432 2589
Q ss_pred eeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCCC
Q 003165 395 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVD 474 (843)
Q Consensus 395 ~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~~ 474 (843)
|+||||||++.|+.+|+.++ .+...+.+...+|.++|+++|++..+.+++++||+++|.| -..+.+++|||+.. .
T Consensus 383 ~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~--~ 457 (887)
T KOG0467|consen 383 FARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKV--P 457 (887)
T ss_pred eeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccC--C
Confidence 99999999999999999887 3333344566899999999999999999999999999999 66777888999975 3
Q ss_pred cccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcE
Q 003165 475 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAE 554 (843)
Q Consensus 475 ~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~ 554 (843)
+.++....|..+|.++++|+|.++.++++|.++|+.|.+.||++++..+++||+++.+.||+|||.|+.+|+. |+ +++
T Consensus 458 ~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-fa-~i~ 535 (887)
T KOG0467|consen 458 CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-FA-KIE 535 (887)
T ss_pred CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-hh-ceE
Confidence 4444446666799999999999999999999999999999999999999999999999999999999999999 98 999
Q ss_pred EEEeccEEeEeecccccccce-------eeeecCCCceEEEEEEeeCchhhHhHHhcCCCC------------CCCC---
Q 003165 555 IIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG------------PRDD--- 612 (843)
Q Consensus 555 v~~~~p~V~yrETi~~~~~~~-------~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~------------~~~~--- 612 (843)
+++++|.|+||||+.+.+... .....+.+.=++.+++.|+...+.+.+...... +.++
T Consensus 536 i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k 615 (887)
T KOG0467|consen 536 ISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQK 615 (887)
T ss_pred EEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccc
Confidence 999999999999996654211 001112222356677777764433322111000 0000
Q ss_pred --hhH---HHHHhhhhc--CCc----hhccceEEEeccCCCCCceEEecccCc--------cchHHHHHHHHHHHHHHHH
Q 003165 613 --PKA---RSKILSEEF--GWD----KDLAKKIWCFGPETTGPNMVVDMCKGV--------QYLNEIKDSVVAGFQWASK 673 (843)
Q Consensus 613 --~~~---~~~~l~~~~--~~~----~~~~~~v~~~~P~~~g~~~~~~~~~g~--------~~~~~~~~~i~~G~~~a~~ 673 (843)
+.. ....+...+ .-+ ..+..++|+|||.+.|+|+|.+...+. .+...+-+++..|||.++.
T Consensus 616 ~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~ 695 (887)
T KOG0467|consen 616 GSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATS 695 (887)
T ss_pred ccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhc
Confidence 000 000111111 100 112356789999999999999865322 2233366899999999999
Q ss_pred cCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhcc
Q 003165 674 EGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKR 752 (843)
Q Consensus 674 ~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rr 752 (843)
.||||.||++|++|.+..+.... ++...-.||++.|++.+|++|++...|||+.|||.|+|++..+++|+||++|++|+
T Consensus 696 sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~ 775 (887)
T KOG0467|consen 696 SGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRH 775 (887)
T ss_pred cCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhc
Confidence 99999999999999998854433 22222237999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecCCCCCCC----------------chHH
Q 003165 753 GHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GTQA 816 (843)
Q Consensus 753 g~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~----------------~~~a 816 (843)
|+|+++++.+||+.|.|+|++|+.|+|||+.++|..|||.|++|+.||||+.++.||||. .|.|
T Consensus 776 gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~A 855 (887)
T KOG0467|consen 776 GKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIA 855 (887)
T ss_pred chhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999983 5899
Q ss_pred HHHHHHHHHhcCC--CCCCCCcccccccC
Q 003165 817 AQLVADIRKRKGL--KEQMTPLSEFEDKL 843 (843)
Q Consensus 817 ~~~~~~~r~rkGl--~~~i~~~~~~~~~~ 843 (843)
+++|+.+|||||| +||||+++||||||
T Consensus 856 rkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 856 RKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 9999999999999 89999999999987
No 8
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=7.8e-123 Score=1108.61 Aligned_cols=713 Identities=39% Similarity=0.665 Sum_probs=615.5
Q ss_pred cCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc
Q 003165 4 FTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD 83 (843)
Q Consensus 4 ~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~ 83 (843)
...+++.++|++++++|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+|+.++.+++.|.
T Consensus 4 ~~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~--- 80 (720)
T TIGR00490 4 KMIDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE--- 80 (720)
T ss_pred hHHHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe---
Confidence 35688999999999999999999999999999999999999998876777788999999999999999988776554
Q ss_pred cccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 84 DALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+++++.++|||||||.+|..++..+++.+|+||+|+|+.+|+..+|+.+|+++...++|+++|+||||+.
T Consensus 81 ---------~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 81 ---------YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred ---------ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 23458999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred cccccCCHHHHHHHHHHHHHHhhhhhhhccCCC-CCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHH
Q 003165 164 FLELQVDGEEAYQTFSRVVENANVIMATYEDPL-LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 242 (843)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 242 (843)
..+++..+++++.++.+++..++..+..+..+. .+.+.+.|..+++.|+|+..+|+|++++|.... ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~-----~~~----- 221 (720)
T TIGR00490 152 INELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTG-----IGF----- 221 (720)
T ss_pred cchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcC-----CCH-----
Confidence 778888899999999999999988875432111 123457788899999999999999887542111 100
Q ss_pred HhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH
Q 003165 243 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM 322 (843)
Q Consensus 243 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~ 322 (843)
++ +.+++.. .. .++ +
T Consensus 222 -------------------------------------~~------------l~~~~~~--~~--~~~------------~ 236 (720)
T TIGR00490 222 -------------------------------------KD------------IYKYCKE--DK--QKE------------L 236 (720)
T ss_pred -------------------------------------HH------------HHHHHHh--cc--HHH------------H
Confidence 11 1222221 00 111 1
Q ss_pred hhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeE
Q 003165 323 QTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (843)
Q Consensus 323 ~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGt 402 (843)
.+|+|++++|||+|++|+|||.+++.++++.++.++.+++....+..||+++|++|+|||+.++++.|. ++|+|||||+
T Consensus 237 ~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGt 315 (720)
T TIGR00490 237 AKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGT 315 (720)
T ss_pred hhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCE
Confidence 258999999999999999999988877766666543222323467889999999999999999988887 9999999999
Q ss_pred EecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccccc
Q 003165 403 VSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAM 481 (843)
Q Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 481 (843)
|++||.|++.+++ .+ ++|.+|+.++|.+..++++|.|||||+|.|++++ .+| |||+... ...+++++
T Consensus 316 L~~G~~l~~~~~~----~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~-~~~~~~~~ 383 (720)
T TIGR00490 316 IRPGMEVYIVDRK----AK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVE-NITPFESI 383 (720)
T ss_pred EcCCCEEEEcCCC----Ce-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCc-ccccCccc
Confidence 9999999976432 22 7999999999999999999999999999999987 456 9987651 22345666
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEecc
Q 003165 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 482 ~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
.+.++|+++++|+|.+++|++||.+||++|++|||+|++.++ +|||++|+||||+|||+|++||+++| ++++++++|
T Consensus 384 ~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P 461 (720)
T TIGR00490 384 KHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPP 461 (720)
T ss_pred ccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCC
Confidence 544599999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred EEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCC-CCChhHHHHHhhhhcCCchhccceEEEecc
Q 003165 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP-RDDPKARSKILSEEFGWDKDLAKKIWCFGP 639 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P 639 (843)
+|+|||||.+.++. ...+.+++|++++++++|++..+.+.|++|.++. ....+.+..+| ..+||+..+++++|+|+
T Consensus 462 ~V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~- 538 (720)
T TIGR00490 462 IVVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVEEYY- 538 (720)
T ss_pred EEEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEEEec-
Confidence 99999999988752 2234477899999999999999888888887642 23455566777 46999999999999996
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHH
Q 003165 640 ETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQL 719 (843)
Q Consensus 640 ~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~ 719 (843)
++|.|+|.+.|+.+++++++||++||++|+++||||||||+||+|+|+|+++|.|+.++..++|++|+++||++||+
T Consensus 539 ---~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~ 615 (720)
T TIGR00490 539 ---EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMM 615 (720)
T ss_pred ---CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999777777788999999999999999
Q ss_pred hcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEe
Q 003165 720 TAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVF 799 (843)
Q Consensus 720 ~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 799 (843)
+|+|+||||||+|||+||++++|+|++||++|||+|++++... +.++|+|++|++|||||+++||++|+|+|+|+|+|
T Consensus 616 ~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f 693 (720)
T TIGR00490 616 QAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEG--DMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEH 693 (720)
T ss_pred hCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCC--CcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEe
Confidence 9999999999999999999999999999999999999886433 57999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCchHHHHHHHHHHHhcCCCCC
Q 003165 800 DHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 832 (843)
Q Consensus 800 ~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~ 832 (843)
+||++||++ ++++++.++||||||+|+
T Consensus 694 ~~y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 694 AGFELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred cccccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 999999976 599999999999999874
No 9
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-124 Score=1015.85 Aligned_cols=661 Identities=26% Similarity=0.405 Sum_probs=567.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
+++|||+|++|.|+||||+++++||++|.+... ..|....+|+.+.|++|||||+++.+++.|.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-------------- 102 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-------------- 102 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------------
Confidence 579999999999999999999999999988662 1222468999999999999999999999997
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHH
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (843)
+++|||||||||+||.-|+++||++.||||+|+|++.|++.||..+|+|+.++++|.|.|+|||||. ++++..+
T Consensus 103 --~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~~~~ 176 (721)
T KOG0465|consen 103 --DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASPFRT 176 (721)
T ss_pred --cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCChHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 9986554
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhcc-C-CChHHHHHHhhcCcccCc
Q 003165 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF-G-VDESKMMERLWGENFFDP 252 (843)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~-~-i~~~~l~~~~w~~~~~~~ 252 (843)
.+.++. .+.. .|+..++|+++.- +| | +|+...++.+|...
T Consensus 177 l~~i~~-------kl~~-----------~~a~vqiPig~e~----------------~f~GvvDlv~~kai~~~g~---- 218 (721)
T KOG0465|consen 177 LNQIRT-------KLNH-----------KPAVVQIPIGSES----------------NFKGVVDLVNGKAIYWDGE---- 218 (721)
T ss_pred HHHHHh-------hcCC-----------chheeEccccccc----------------cchhHHhhhhceEEEEcCC----
Confidence 433333 2221 2455588887651 22 2 77778778888422
Q ss_pred CCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc---
Q 003165 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 328 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (843)
....+... +.+........+-+.+|+|.+++-|+++.+.||++ .+++.++++ .+++++++ +.|+|+
T Consensus 219 ~g~~i~~~-----eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~G 288 (721)
T KOG0465|consen 219 NGEIVRKD-----EIPEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLCG 288 (721)
T ss_pred CCceeEec-----cCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEec
Confidence 11122222 34555666677788899999999999999999998 678888886 67888877 689997
Q ss_pred -------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCC-CeEEEEEEeeecCCCCcceeeeeeEe
Q 003165 329 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNG-PLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 329 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-plva~VfK~~~~~~~g~~l~~~RV~S 400 (843)
+|+|||+|++|||||.|..++.+.+--+ +++ ......+++. ||+|++||+.++++ |+ ++|+|||+
T Consensus 289 SAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~---~~e--kv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvYq 361 (721)
T KOG0465|consen 289 SALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN---SKE--KVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVYQ 361 (721)
T ss_pred hhhcccCcchHHHHHHHhCCChhhhcccccccCCC---Ccc--ceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEee
Confidence 8999999999999999998876652111 111 3444444444 99999999999888 77 99999999
Q ss_pred eEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccc
Q 003165 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIR 479 (843)
Q Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~ 479 (843)
|+|++||.+| |.+++++ +|+.+|+.||+.++++|+++.||||||+.|++ + .+| |+++... ....+.
T Consensus 362 G~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGid-c--asGDTftd~~~-~~~~m~ 428 (721)
T KOG0465|consen 362 GTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGID-C--ASGDTFTDKQN-LALSME 428 (721)
T ss_pred eeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeeccc-c--ccCceeccCcc-ccceee
Confidence 9999999999 6667766 89999999999999999999999999999995 4 577 9998742 456677
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEe
Q 003165 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 480 ~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
.+..| +||+++||+|.+..|.+++.+||.++.+|||||++..| |+||++|+|||||||||..+||+++| |+++.+|
T Consensus 429 si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~G 505 (721)
T KOG0465|consen 429 SIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAELG 505 (721)
T ss_pred eeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCccccC
Confidence 88776 99999999999999999999999999999999999998 99999999999999999999999999 9999999
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 638 (843)
+|+|+|||||..++++ .+.|++ |+|+. +||+. .+-.++
T Consensus 506 kp~VayRETi~~~~~f------~~~hKk----------------qSgG~--------------gqy~k------v~g~~e 543 (721)
T KOG0465|consen 506 KPQVAYRETITSPVEF------DYTHKK----------------QSGGA--------------GQYGK------VEGVIE 543 (721)
T ss_pred CceeeehhhcCCcccc------eeeecc----------------ccCCC--------------ccccc------eeeEEe
Confidence 9999999999988743 445666 77775 67774 222466
Q ss_pred cCCCC---CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHH
Q 003165 639 PETTG---PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 639 P~~~g---~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (843)
|.+.+ ..+|.+++.|+..|.++++++++||.++++.|||.|+|+.|+++.|.||.+|. ||++.+ |+.|++.|+
T Consensus 544 pl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~a~ 620 (721)
T KOG0465|consen 544 PLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATRNAF 620 (721)
T ss_pred ecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHHHHH
Confidence 65443 34799999999999999999999999999999999999999999999999998 877765 558999999
Q ss_pred HHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceE
Q 003165 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (843)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (843)
++||.+|+|+||||||+|||++|+|++|.|+++|++|+|.|.+.+..+ +.++|.|.+||.+||||+++|||+|+|+|.
T Consensus 621 r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGkge 698 (721)
T KOG0465|consen 621 REAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGKGE 698 (721)
T ss_pred HHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCcce
Confidence 999999999999999999999999999999999999999999988766 599999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchHHHHHHH
Q 003165 795 PQCVFDHWDMMSSDPLEPGTQAAQLVA 821 (843)
Q Consensus 795 ~~~~f~~y~~v~~~~~~~~~~a~~~~~ 821 (843)
|+|+|++|+++|.+. +++++.
T Consensus 699 ftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 699 FTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred EEEeecccCCCchHH------HHHhhc
Confidence 999999999999985 666654
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-114 Score=1035.16 Aligned_cols=665 Identities=29% Similarity=0.431 Sum_probs=563.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+++|||+|+||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------- 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-------------
Confidence 4689999999999999999999999999987552 1112579999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
+++++|||||||.+|..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|.|+|+||||+. +.+.++
T Consensus 72 ---~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~~~ 144 (691)
T PRK12739 72 ---GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADFFR 144 (691)
T ss_pred ---CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 766333
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
. +++++..+.. .+...++|++.. .++.- .+|...+..++|++...
T Consensus 145 ~-------~~~i~~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~--- 189 (691)
T PRK12739 145 S-------VEQIKDRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL--- 189 (691)
T ss_pred H-------HHHHHHHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC---
Confidence 3 2333322210 122235555432 11110 16677788899976411
Q ss_pred CCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc----
Q 003165 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA---- 328 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (843)
+++|... .....+.+++++++++|++.+++.|++++++||++ .+++.+++. ..+.++++ .+|+|+
T Consensus 190 ~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gS 259 (691)
T PRK12739 190 GAKYEEE-----DIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGS 259 (691)
T ss_pred CCeeEEc-----CCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEecc
Confidence 1223322 23455778899999999999999999999999987 568888876 45666655 589997
Q ss_pred ------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeE
Q 003165 329 ------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (843)
Q Consensus 329 ------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGt 402 (843)
+++|||+|++++|+|.+++..+...... + ...++.|++++|++|+|||++++++.|+ ++|+|||||+
T Consensus 260 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGt 332 (691)
T PRK12739 260 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGV 332 (691)
T ss_pred ccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeE
Confidence 7999999999999999877655433211 1 2466889999999999999999999887 9999999999
Q ss_pred EecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccccc
Q 003165 403 VSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAM 481 (843)
Q Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 481 (843)
|++||.|++ .+++++ ++|.+||.++|++..++++++|||||+|.|++++ ++| ||++.+ .+..++++
T Consensus 333 L~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~l~~~ 399 (691)
T PRK12739 333 LESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEK--APIILESM 399 (691)
T ss_pred EcCCCEEEe----CCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCC--CccccCCC
Confidence 999999984 333333 7999999999999999999999999999999986 778 998876 56677888
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEecc
Q 003165 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 482 ~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
.++ .|+++++|+|.+++|++||.+||++|++|||+|+|+++ +|||++|+||||||||+|++||+++| ++++++++|
T Consensus 400 ~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~p 476 (691)
T PRK12739 400 EFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGAP 476 (691)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecCC
Confidence 885 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred EEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEE-Eecc
Q 003165 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW-CFGP 639 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~-~~~P 639 (843)
+|+|||||.+.++ ..++|++ ++|+. +||+ .++ .++|
T Consensus 477 ~V~yrEti~~~~~------~~~~~~~----------------~s~g~--------------~~~~-------~v~l~~~P 513 (691)
T PRK12739 477 QVAYRETITKSVE------AEGKYKK----------------QSGGR--------------GQYG-------DVWIEFEP 513 (691)
T ss_pred EEEEeeccCCccc------ccceecc----------------ccCCC--------------Ccee-------EEEEEEEE
Confidence 9999999998763 3455554 45442 3444 254 5888
Q ss_pred CCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHH
Q 003165 640 ETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 640 ~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 717 (843)
...| ++.|.+++.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|. |+.+ +++.+|+++||++|
T Consensus 514 ~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~~a 590 (691)
T PRK12739 514 NEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALKEA 590 (691)
T ss_pred CCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHHHH
Confidence 6554 68999999999999999999999999999999999999999999999999996 5543 45678999999999
Q ss_pred HHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++ .+.|+|.+|++|+|||+++||++|+|+|+|+|
T Consensus 591 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~ 668 (691)
T PRK12739 591 AKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSM 668 (691)
T ss_pred HHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEE
Confidence 9999999999999999999999999999999999999999887664 67899999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHH
Q 003165 798 VFDHWDMMSSDPLEPGTQAAQLVAD 822 (843)
Q Consensus 798 ~f~~y~~v~~~~~~~~~~a~~~~~~ 822 (843)
+|+||++||++. +++++++
T Consensus 669 ~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 669 EFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred EeccceECCHHH------HHHHHHH
Confidence 999999999764 8888765
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.1e-114 Score=1031.73 Aligned_cols=666 Identities=28% Similarity=0.415 Sum_probs=557.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.++||||+|+||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~------------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-------------
Confidence 5689999999999999999999999999987652 1122579999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
++++||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++.+.++|+++|+||||+. +.+..+
T Consensus 74 ---~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~~~ 146 (693)
T PRK00007 74 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADFYR 146 (693)
T ss_pred ---CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 776433
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
. ++++.+.++.. +....+|+++. .++.- -+|+..+..++|++.. .
T Consensus 147 ~---~~~i~~~l~~~---------------~~~~~ipisa~-~~f~g-------------~~d~~~~~~~~~~~~~---~ 191 (693)
T PRK00007 147 V---VEQIKDRLGAN---------------PVPIQLPIGAE-DDFKG-------------VVDLVKMKAIIWNEAD---L 191 (693)
T ss_pred H---HHHHHHHhCCC---------------eeeEEecCccC-CcceE-------------EEEcceeeeeecccCC---C
Confidence 3 33333333221 12224555432 22110 0455566677886421 2
Q ss_pred CCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc----
Q 003165 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA---- 328 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (843)
++++... +......+++.+++++|++.+++.|++++++||++ ++++.+++. .+++++++ ++|+|+
T Consensus 192 ~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~gS 261 (693)
T PRK00007 192 GATFEYE-----EIPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLCGS 261 (693)
T ss_pred CCcceEc-----cCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEecc
Confidence 2223322 22334566788899999999999999999999985 789998886 56666665 589997
Q ss_pred ------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeE
Q 003165 329 ------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (843)
Q Consensus 329 ------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGt 402 (843)
+++|||+|++++|+|.+++..+.. ..+......++.||+++|++|||||+.++++.|+ ++|+|||||+
T Consensus 262 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGt 335 (693)
T PRK00007 262 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGV 335 (693)
T ss_pred cccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeE
Confidence 599999999999999876543210 0011123456789999999999999999999887 9999999999
Q ss_pred EecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccccc
Q 003165 403 VSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAM 481 (843)
Q Consensus 403 L~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~ 481 (843)
|++||.|++ .+.+++ ++|++||.++|++..++++|+|||||++.|++++ ++| ||++.+ .+..++++
T Consensus 336 l~~g~~v~~----~~~~~~-----eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~--~~~~l~~~ 402 (693)
T PRK00007 336 LESGSYVLN----STKGKK-----ERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEK--NPIILESM 402 (693)
T ss_pred EcCCCEEEe----CCCCce-----eEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCC--CccccCCC
Confidence 999999994 333333 7999999999999999999999999999999987 677 998876 55677778
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEecc
Q 003165 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 482 ~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
.++ .|+++++|+|.++.|.+||.+||++|++|||||+|.++ +|||++|+||||||||+|++||+++| ++++++++|
T Consensus 403 ~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s~p 479 (693)
T PRK00007 403 EFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGKP 479 (693)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEecCC
Confidence 775 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred EEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-ecc
Q 003165 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-FGP 639 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~~P 639 (843)
+|+|||||.+.+ +..++|++ ++|+. +||+ .+|. ++|
T Consensus 480 ~V~yrETi~~~~------~~~~~~~~----------------~~gg~--------------~~~~-------~v~l~~eP 516 (693)
T PRK00007 480 QVAYRETIRKKV------EVEGKFVK----------------QSGGR--------------GQYG-------HVVIEFEP 516 (693)
T ss_pred EEEEeecccCcc------ccCccccc----------------ccCCC--------------CceE-------EEEEEEEe
Confidence 999999999876 33455554 44443 3443 2553 777
Q ss_pred CCC-CCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHH
Q 003165 640 ETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 640 ~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~a 717 (843)
... .++.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|. |+.+ .++..|+++||++|
T Consensus 517 ~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~a 593 (693)
T PRK00007 517 NEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKEA 593 (693)
T ss_pred CCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHHH
Confidence 544 367889999999999999999999999999999999999999999999999996 6544 45778999999999
Q ss_pred HHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+ +.+.|+|.+|++|||||+++||++|+|+|+|+|
T Consensus 594 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~ 671 (693)
T PRK00007 594 AKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSM 671 (693)
T ss_pred HHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEE
Confidence 999999999999999999999999999999999999999987654 478999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchHHHHHHHH
Q 003165 798 VFDHWDMMSSDPLEPGTQAAQLVAD 822 (843)
Q Consensus 798 ~f~~y~~v~~~~~~~~~~a~~~~~~ 822 (843)
+|+||++||++. +++++.+
T Consensus 672 ~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 672 EFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred EeceeeECCHHH------HHHHHHH
Confidence 999999999874 7777654
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=4.6e-111 Score=1006.29 Aligned_cols=663 Identities=28% Similarity=0.391 Sum_probs=551.5
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc---cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
..++||||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|++++..++.|+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 35689999999999999999999999999987551 112 478999999999999999999999996
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCH
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (843)
+++++|||||||.+|..++..+++.+|++|+|||+.+|++.|++.+|+++...++|+++|+||||+. +++.
T Consensus 74 -----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~~~ 144 (689)
T TIGR00484 74 -----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GANF 144 (689)
T ss_pred -----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 7764
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
++..+.++ ..+.. .+....+|++.. .++.-. +|+..+..+.| +
T Consensus 145 ~~~~~~i~-------~~l~~-----------~~~~~~ipis~~-~~~~~~-------------id~~~~~~~~~-----~ 187 (689)
T TIGR00484 145 LRVVNQIK-------QRLGA-----------NAVPIQLPIGAE-DNFIGV-------------IDLVEMKAYFF-----N 187 (689)
T ss_pred HHHHHHHH-------HHhCC-----------CceeEEeccccC-CCceEE-------------EECccceEEec-----c
Confidence 44333332 22210 122235555432 221100 33333323333 2
Q ss_pred cCC-CceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc-
Q 003165 252 PAT-KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA- 328 (843)
Q Consensus 252 ~~~-~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 328 (843)
+.. ..+... .....+.+++.+++++|+|++++.|+++|++||++ .+++.+++. ++|.++++ ++++|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~ 257 (689)
T TIGR00484 188 GDKGTKAIEK-----EIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPVL 257 (689)
T ss_pred cCCCceeeec-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEE
Confidence 211 112211 34556778888999999999999999999999995 688888875 56677665 678887
Q ss_pred ---------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeE
Q 003165 329 ---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
Q Consensus 329 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~ 399 (843)
+++|||+|++++|+|.+++..+... .+......+.|++++|++|+|||+.++++.|. ++|+|||
T Consensus 258 ~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~ 330 (689)
T TIGR00484 258 CGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVY 330 (689)
T ss_pred eccccCCccHHHHHHHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEE
Confidence 5999999999999998765432211 11112456789999999999999999999886 9999999
Q ss_pred eeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccc
Q 003165 400 SGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPI 478 (843)
Q Consensus 400 SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~ 478 (843)
||+|++||.|++ .+.+++ +++++||.++|++..++++++|||||+|.|++++ .+| ||++.+ .+..+
T Consensus 331 sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~ 397 (689)
T TIGR00484 331 SGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPK--IDVIL 397 (689)
T ss_pred EeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCC--Ccccc
Confidence 999999999994 333333 7999999999999999999999999999999987 566 998876 56677
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEE
Q 003165 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 557 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 557 (843)
+++.++ +|+++++|+|.++.|.+||.+||++|.+|||+|+|.++ +|||++|+||||||||+|++||+++| ++++++
T Consensus 398 ~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~~ 474 (689)
T TIGR00484 398 ERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEANV 474 (689)
T ss_pred CCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEe
Confidence 778775 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred eccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-
Q 003165 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC- 636 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~- 636 (843)
++|+|+|||||.+.++ ..++|++ ++|+. ++|+ .+|.
T Consensus 475 ~~p~V~yrEti~~~~~------~~~~~~~----------------~~~~~--------------~~~~-------~v~l~ 511 (689)
T TIGR00484 475 GAPQVAYRETIRSKVE------VEGKHAK----------------QSGGR--------------GQYG-------HVKIR 511 (689)
T ss_pred cCCEEEEeecccCccc------ccccccc----------------ccCCC--------------CceE-------EEEEE
Confidence 9999999999998763 2445544 44432 3333 3553
Q ss_pred eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHH
Q 003165 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIY 715 (843)
Q Consensus 637 ~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~ 715 (843)
++|...+++.|.+++.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. |+.. .++.+|+++||+
T Consensus 512 ~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~---~~~~~a~~~a~~ 588 (689)
T TIGR00484 512 FEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSE---MAFKLAASLAFK 588 (689)
T ss_pred EEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCH---HHHHHHHHHHHH
Confidence 777655677888888899999999999999999999999999999999999999999996 5543 356689999999
Q ss_pred HHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEe
Q 003165 716 ASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (843)
Q Consensus 716 ~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ +.+.|+|++|++|||||+++||++|+|+|+|
T Consensus 589 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~ 666 (689)
T TIGR00484 589 EAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTY 666 (689)
T ss_pred HHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999887654 4799999999999999999999999999999
Q ss_pred eeEecceeecCCCCCCCchHHHHHHHH
Q 003165 796 QCVFDHWDMMSSDPLEPGTQAAQLVAD 822 (843)
Q Consensus 796 ~~~f~~y~~v~~~~~~~~~~a~~~~~~ 822 (843)
+|+|+||++||+++ +++++++
T Consensus 667 ~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 667 SMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred EEEeccceeCCHHH------HHHHHHh
Confidence 99999999999886 7887754
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1e-108 Score=988.96 Aligned_cols=662 Identities=29% Similarity=0.411 Sum_probs=549.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc--CCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+++|||+|+||+|||||||+++|++.+|.+.+.. .+..+++|+.++|++||+|+.++..++.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------- 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------- 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC-------------
Confidence 45799999999999999999999999998876521 112468999999999999999999999996
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
++.++|||||||.||..++..+++.+|++++|+|+++|++.++..+|+++...++|+++|+||+|+. +++..
T Consensus 72 ---~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~~~- 143 (687)
T PRK13351 72 ---NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GADLF- 143 (687)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCCHH-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 77743
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
+.+++++..+.. .+...++|+. +.+.||. |+..+..+.|+..
T Consensus 144 ------~~~~~i~~~l~~-----------~~~~~~~P~~~~~~~~g~i----------------d~~~~~~~~~~~~--- 187 (687)
T PRK13351 144 ------KVLEDIEERFGK-----------RPLPLQLPIGSEDGFEGVV----------------DLITEPELHFSEG--- 187 (687)
T ss_pred ------HHHHHHHHHHCC-----------CeEEEEeccccCCceEEEE----------------ECccceEEecccC---
Confidence 444444444321 1112233332 3345553 3333444566432
Q ss_pred cCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc--
Q 003165 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA-- 328 (843)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 328 (843)
..++.+... +....|.+++++++++|++.+++.|++++++||++ .+++.+++. ..++++++ ++|+|+
T Consensus 188 ~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~ 257 (687)
T PRK13351 188 DGGSTVEEG-----PIPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLR---APLREGTRSGHLVPVLF 257 (687)
T ss_pred CCCCceEEc-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEe
Confidence 112223322 33557888899999999999999999999999985 789998886 45555554 689997
Q ss_pred --------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEe
Q 003165 329 --------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 329 --------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~S 400 (843)
+++|||+|++++|+|.+++..+... . +. ....+.|++++|++|+|||+.++++.|. ++|+||||
T Consensus 258 gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~----~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~s 329 (687)
T PRK13351 258 GSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--D----NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYS 329 (687)
T ss_pred cccCcCccHHHHHHHHHHHCCChhhcccccccC--C----CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeE
Confidence 5899999999999998766544321 0 00 1234688999999999999999998887 99999999
Q ss_pred eEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccc
Q 003165 401 GKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIR 479 (843)
Q Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~ 479 (843)
|+|++||+|++.+. ++. +++++||.++|.+..++++|.|||||++.|++++ .+| ||++.. ....++
T Consensus 330 Gtl~~g~~v~~~~~----~~~-----~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~--~~~~~~ 396 (687)
T PRK13351 330 GTLRAGSQLYNGTG----GKR-----EKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSA--DPVLLE 396 (687)
T ss_pred EEEcCCCEEEeCCC----CCc-----eEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCC--CccccC
Confidence 99999999997542 222 7999999999999999999999999999999987 556 998876 455666
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEe
Q 003165 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 480 ~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
++.++ +|+++++|+|.+++|.++|.+||++|.+|||+|+|+++ +|||++|+||||||||++++||+++| +++++++
T Consensus 397 ~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~ 473 (687)
T PRK13351 397 LLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTG 473 (687)
T ss_pred CCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEec
Confidence 76664 99999999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-e
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC-F 637 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~-~ 637 (843)
+|+|+|||||.+.++. .++|++ +.|+. +||+ .++. +
T Consensus 474 ~p~V~y~Eti~~~~~~------~~~~~~----------------~~~~~--------------~~~~-------~v~~~~ 510 (687)
T PRK13351 474 KPQVAYRETIRKMAEG------VYRHKK----------------QFGGK--------------GQFG-------EVHLRV 510 (687)
T ss_pred CCeEEEEeeccccccc------cceeee----------------ccCCC--------------ceEE-------EEEEEE
Confidence 9999999999987632 334443 33332 2333 2443 5
Q ss_pred ccCCC-CCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHH
Q 003165 638 GPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYA 716 (843)
Q Consensus 638 ~P~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~ 716 (843)
+|... .++.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.+.+ ..++|++|+++||++
T Consensus 511 ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~~~ 588 (687)
T PRK13351 511 EPLERGAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAFLE 588 (687)
T ss_pred EECCCCCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHH
Confidence 55432 248888888999999999999999999999999999999999999999999996322 357899999999999
Q ss_pred HHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEee
Q 003165 717 SQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (843)
Q Consensus 717 al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+++ .+.|+|.+|++|||||+++||++|+|+|+|+
T Consensus 589 a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~ 667 (687)
T PRK13351 589 AFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGSFT 667 (687)
T ss_pred HHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCceEEE
Confidence 999999999999999999999999999999999999999998876653 3349999999999999999999999999999
Q ss_pred eEecceeecCCCCCCCchHHHHHH
Q 003165 797 CVFDHWDMMSSDPLEPGTQAAQLV 820 (843)
Q Consensus 797 ~~f~~y~~v~~~~~~~~~~a~~~~ 820 (843)
|+|+||++||+++ +++++
T Consensus 668 ~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 668 MEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred EEeccceeCCHHH------HHHHh
Confidence 9999999999886 66664
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=5.6e-102 Score=929.66 Aligned_cols=647 Identities=29% Similarity=0.415 Sum_probs=531.2
Q ss_pred EeCCCCCHHHHHHHHHHhcCCccccc--CCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEE
Q 003165 25 IAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINL 102 (843)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (843)
+||+|||||||+++|++.+|.+.+.. .+..+++|+.+.|++||+|+..+..++.|. ++.++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 69999999999999999999887620 112378999999999999999999999996 899999
Q ss_pred EeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHHHHHHH
Q 003165 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVV 182 (843)
Q Consensus 103 iDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~ 182 (843)
||||||.+|..++..+++.+|++++|+|+++|...++..+|+++...++|.++|+||+|+. +.+..+..+
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~~~~~------ 134 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFFRVLA------ 134 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHH------
Confidence 9999999999999999999999999999999999999999999999999999999999998 666443333
Q ss_pred HHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCceeecCC
Q 003165 183 ENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNT 262 (843)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~ 262 (843)
+++..+.. .. .....|... ++++.||... .....+ +|+ .++.+...
T Consensus 135 -~l~~~l~~---~~--~~~~~p~~~----~~~~~~~id~----------------~~~~~~-----~~~-~~~~~~~~-- 180 (668)
T PRK12740 135 -QLQEKLGA---PV--VPLQLPIGE----GDDFTGVVDL----------------LSMKAY-----RYD-EGGPSEEI-- 180 (668)
T ss_pred -HHHHHHCC---Cc--eeEEecccC----CCCceEEEEC----------------ccceEE-----Eec-CCCeeEEe--
Confidence 33332211 00 011123222 3445555332 111122 233 23333322
Q ss_pred CcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc----------hHH
Q 003165 263 GSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA----------SSA 331 (843)
Q Consensus 263 ~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----------~~~ 331 (843)
.....+.+++.+++++|++.+++.|++++++||++ ++++.+++. ..+++.+. ++|+|+ ++.
T Consensus 181 ---~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~---~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 252 (668)
T PRK12740 181 ---EIPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIK---AGLRKATLAGEIVPVFCGSALKNKGVQR 252 (668)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHcCCEEEEEeccccCCccHHH
Confidence 23445677888999999999999999999999987 788888876 34555544 689998 899
Q ss_pred HHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEE
Q 003165 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (843)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v 411 (843)
|||+|++++|+|.+++.+. +. ......+..|++++|++|+|||++++++.|. ++|+|||||+|++||.|++
T Consensus 253 LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~ 323 (668)
T PRK12740 253 LLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYN 323 (668)
T ss_pred HHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe
Confidence 9999999999998765421 11 1112345679999999999999999998886 9999999999999999997
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccccccCCCceEE
Q 003165 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (843)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~ 490 (843)
.+ ++++ +++++|+.++|++.+++++|+|||||++.|++.+ .+| ||++.. .+.+++++.++ +|+++
T Consensus 324 ~~----~~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~~~~~~~~-~P~~~ 389 (668)
T PRK12740 324 SG----TGKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKG--DPILLEPMEFP-EPVIS 389 (668)
T ss_pred CC----CCCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCC--CccccCCCCCC-CcceE
Confidence 54 1222 7999999999999999999999999999999875 566 998766 45677788876 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeeccc
Q 003165 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 491 ~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
++|+|.+++|.++|.+||++|+++||+|+|..+ ++||++|+||||||||+|++||+++| ++++.+++|+|+|||||.
T Consensus 390 ~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~ 467 (668)
T PRK12740 390 LAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETIR 467 (668)
T ss_pred EEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeeccC
Confidence 999999999999999999999999999999998 89999999999999999999999999 999999999999999999
Q ss_pred ccccceeeee-c---CCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCc
Q 003165 570 EKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (843)
Q Consensus 570 ~~~~~~~~~~-~---~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~ 645 (843)
++++.....+ . .+.+..++++++|++.+ .++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~---------------------------------------------~~~ 502 (668)
T PRK12740 468 KKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG---------------------------------------------EGF 502 (668)
T ss_pred CCccccceeccccCCCCceEEEEEEEEECCCC---------------------------------------------Cce
Confidence 8764221111 0 11223455555555421 135
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHHHHhcCCe
Q 003165 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPR 724 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~~~ 724 (843)
.|.+.+.|+.++++++++|++||++|+++|||||+|++||+|+|+|+.+|. |+ ...+|+.|+++||++|+++|+|+
T Consensus 503 ~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~~~ 579 (668)
T PRK12740 503 EFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDS---SEMAFKIAARLAFREALPKAKPV 579 (668)
T ss_pred EEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCC---CHHHHHHHHHHHHHHHHHhcCCe
Confidence 667777788899999999999999999999999999999999999999996 43 34568899999999999999999
Q ss_pred eeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceee
Q 003165 725 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
||||||+|||++|++++|+|+++|++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+|+++|+||++
T Consensus 580 LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~--~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~ 657 (668)
T PRK12740 580 LLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG--GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEE 657 (668)
T ss_pred eecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC--CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEeccccc
Confidence 999999999999999999999999999999999887664 389999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHH
Q 003165 805 MSSDPLEPGTQAAQLV 820 (843)
Q Consensus 805 v~~~~~~~~~~a~~~~ 820 (843)
+|+++ +++++
T Consensus 658 ~~~~~------~~~~~ 667 (668)
T PRK12740 658 VPGNV------AEKVI 667 (668)
T ss_pred CCHHH------HHHHh
Confidence 99875 66654
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-97 Score=771.89 Aligned_cols=659 Identities=27% Similarity=0.364 Sum_probs=521.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc----eEeecCcccccccCeeEeeeeEEEEEeecccccccccCc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
.++|||+|++|+|+||||.+++++|.+|.+.. +|. .+++|+...|++|||||+++.+.|.|+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 57999999999999999999999999999876 443 358999999999999999999999996
Q ss_pred CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHH
Q 003165 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (843)
++++|+||||||+||.-|+++++|+.||++.|+|++.|+++||.++|+|+.+.++|.+.|+||||+. .++.+
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~anfe 172 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AANFE 172 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 77754
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003165 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
.....+++ .+. ..|..-++|++.+.. |+ .-+ +|...-.+.+|+-+.-|+
T Consensus 173 ~avdsi~e-------kl~-----------ak~l~l~lpi~eak~---fn-----kg~-----ldil~ke~l~~ncnsndg 221 (753)
T KOG0464|consen 173 NAVDSIEE-------KLG-----------AKALKLQLPIGEAKG---FN-----KGF-----LDILHKEKLLGNCNSNDG 221 (753)
T ss_pred hHHHHHHH-------HhC-----------CceEEEEeccccccc---cc-----chH-----HHHHHHhhccCCCCCCcc
Confidence 44443333 332 124455777776521 10 000 444444456674332222
Q ss_pred CCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCC---CChHHHhhhhHHHHHH-HHhhhccc
Q 003165 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVT---MKSEEKDLMGKALMKR-VMQTWLPA 328 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~P~ 328 (843)
+.|...|-- +.-.+.+.+...+...+|.+.+++.|+++..++|+++... ++.++++ .++.+- ++++..|+
T Consensus 222 --kd~e~~pll-e~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i 295 (753)
T KOG0464|consen 222 --KDFENKPLL-EKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPI 295 (753)
T ss_pred --ccccCCccc-ccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcce
Confidence 336554400 0112334455556778999999999999999999998553 5666665 445543 34777775
Q ss_pred ----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
+|+|||++.-|+|||.+++ |.+-.+|. ..++|+.||+.+|+.+|+ ++|.||
T Consensus 296 ~cgsaiknkgiqplldavtmylpspeern-yeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fmri 356 (753)
T KOG0464|consen 296 LCGSAIKNKGIQPLLDAVTMYLPSPEERN-YEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFMRI 356 (753)
T ss_pred ehhhhhcccCccchhhhhhhccCChhhcc-hHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEEEE
Confidence 7999999999999998765 66666775 237899999999999999 999999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCC----
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV---- 473 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~---- 473 (843)
|||+++++..+++...+. ++++.++|++++++..+|+++.||||..++||+++ .|| |+..++.+
T Consensus 357 ysgsi~~~~ai~nin~~~---------se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~aa 425 (753)
T KOG0464|consen 357 YSGSIHNNLAIFNINGMC---------SEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEAA 425 (753)
T ss_pred ecccccCceeeeeccccc---------ccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHHH
Confidence 999999999999664332 37999999999999999999999999999999998 566 77655321
Q ss_pred ------------------CcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecc
Q 003165 474 ------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAG 534 (843)
Q Consensus 474 ------------------~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~G 534 (843)
....|.++..| .|||+|.|||.+.+.++.+..||+.|.+||||++++.+ ++||+++.|||
T Consensus 426 ~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 426 AQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 11235667765 99999999999999999999999999999999999999 99999999999
Q ss_pred hhHHHHHHHHHHhhcCCCcEEEEeccEEeEeecccccccceeeee---cCCCceEEEEEEeeCchhhHhHHhcCCCCCCC
Q 003165 535 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK---SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRD 611 (843)
Q Consensus 535 ElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~---~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~ 611 (843)
|||+|++.+|++++| |+++-+|+.+|+|||+|.+......... +..+|- .+++++--+++. + ..+|
T Consensus 505 elhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~-~~velear~~~t----q-a~ip--- 573 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHL-EFVELEARLEET----Q-AHIP--- 573 (753)
T ss_pred hhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhccccccccc-eEEEEEeeeccc----c-cccc---
Confidence 999999999999999 9999999999999999988643221111 122221 223322111110 0 0111
Q ss_pred ChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEecccCccchHHH-HHHHHHHHHHHHHcCCCCCCCccceEEEEe
Q 003165 612 DPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEI-KDSVVAGFQWASKEGALAEENMRGICFEVC 690 (843)
Q Consensus 612 ~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~~~~~~g~~~~~~~-~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~ 690 (843)
+ ++|-.--|.. -....-.+ +.+|++|+.+||..|||+|+|+++|+++|+
T Consensus 574 -~------------------kkiefe~~es-----------~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~ 623 (753)
T KOG0464|consen 574 -F------------------KKIEFELAES-----------ANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLH 623 (753)
T ss_pred -c------------------eeEEeecccc-----------ccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeE
Confidence 0 0011100110 00112223 689999999999999999999999999999
Q ss_pred eeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecC-cccccHHHHhhhccceeeeecccCCCCcEEE
Q 003165 691 DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPE-QALGGIYSVLNQKRGHVFEEMQRPGTPLYNI 769 (843)
Q Consensus 691 d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~-~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I 769 (843)
.+.+|.... .+..+.+++.+|+++|+.+|..+|+||+|+++|.+.. +++..|+++|.+|||++...+..+.+....|
T Consensus 624 ~~~i~~gk~--n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri 701 (753)
T KOG0464|consen 624 ECIIHGGKI--NPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRI 701 (753)
T ss_pred EEEecCCcC--CHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchhee
Confidence 999996432 2445778999999999999999999999999999865 9999999999999999999888776667789
Q ss_pred EEEeechhhcCchHHHhhhCCCceEeeeEecceeecCCC
Q 003165 770 KAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD 808 (843)
Q Consensus 770 ~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~ 808 (843)
.|.+|++|..||++.||.+|||.|.|.++|++|+.|.+.
T Consensus 702 ~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~ 740 (753)
T KOG0464|consen 702 CAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEH 740 (753)
T ss_pred eEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChH
Confidence 999999999999999999999999999999999999775
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.7e-77 Score=694.81 Aligned_cols=464 Identities=27% Similarity=0.479 Sum_probs=395.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|||+|+||+|||||||+++|++.+|.+.+...-..+++|+.++|++||+|+.++..++.|. ++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----------------~~ 64 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----------------GT 64 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------CE
Confidence 69999999999999999999999999887632223468999999999999999999999996 89
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHHH
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (843)
++||||||||.||..++.++++.+|+|+|||||.+|+.+||+.+|+.+...++|+++|+||||+. +.+++++.+.+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ei 140 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVDEV 140 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 77766665555
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCcee
Q 003165 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWT 258 (843)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~ 258 (843)
.+.+..+.. .++. ...++.++|+.+||+..-. +..
T Consensus 141 ~~l~~~~g~-----~~e~--------l~~pvl~~SA~~g~~~~~~---------------------------~~~----- 175 (594)
T TIGR01394 141 FDLFAELGA-----DDEQ--------LDFPIVYASGRAGWASLDL---------------------------DDP----- 175 (594)
T ss_pred HHHHHhhcc-----cccc--------ccCcEEechhhcCcccccC---------------------------ccc-----
Confidence 555443221 0000 0114566777777643100 000
Q ss_pred ecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHHHh
Q 003165 259 TKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIF 338 (843)
Q Consensus 259 ~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~ 338 (843)
. + .+.+||++|++
T Consensus 176 ------------------------------~--~-----------------------------------gi~~Lld~Iv~ 188 (594)
T TIGR01394 176 ------------------------------S--D-----------------------------------NMAPLFDAIVR 188 (594)
T ss_pred ------------------------------c--c-----------------------------------CHHHHHHHHHH
Confidence 0 0 02568899999
Q ss_pred cCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCC
Q 003165 339 HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVP 418 (843)
Q Consensus 339 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~ 418 (843)
++|+|. .++++||.++|||++.+++.|+ ++++||+||+|++||.|++...+
T Consensus 189 ~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~--- 239 (594)
T TIGR01394 189 HVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD--- 239 (594)
T ss_pred hCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC---
Confidence 999993 1356899999999999999998 99999999999999999976421
Q ss_pred CCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCC
Q 003165 419 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKV 497 (843)
Q Consensus 419 ~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~ 497 (843)
+. ...++|++|+.+.|.+..++++|.|||||++.|++++ ++| |||+.. .+.+++++.++ +|+++++++|.+
T Consensus 240 ~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~--~~~~l~~~~~~-~P~~~~~~~~~~ 311 (594)
T TIGR01394 240 GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPE--VPEALPTITVD-EPTLSMTFSVND 311 (594)
T ss_pred Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCC--ccccCCCCCCC-CCeEEEEEEecC
Confidence 11 1237999999999999999999999999999999987 677 999887 66778888876 999999999975
Q ss_pred C---CChhH------HHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeec
Q 003165 498 A---SDLPK------LVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 498 ~---~d~~k------l~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
. .++.| |.++|.++.++||+|+|+.+ +++|++|+|+|||||+|++++|+++ |+++.+++|+|+|||
T Consensus 312 ~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yre- 387 (594)
T TIGR01394 312 SPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYKE- 387 (594)
T ss_pred CCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEEe-
Confidence 4 34334 99999999999999999998 8999999999999999999999998 899999999999998
Q ss_pred ccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceE
Q 003165 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~ 647 (843)
|.
T Consensus 388 i~------------------------------------------------------------------------------ 389 (594)
T TIGR01394 388 ID------------------------------------------------------------------------------ 389 (594)
T ss_pred CC------------------------------------------------------------------------------
Confidence 30
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003165 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (843)
| +|||
T Consensus 390 -----g----------------------------------------------------------------------~llE 394 (594)
T TIGR01394 390 -----G----------------------------------------------------------------------KKLE 394 (594)
T ss_pred -----C----------------------------------------------------------------------eEEC
Confidence 0 5799
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecCC
Q 003165 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSS 807 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~ 807 (843)
||++++|.||++++|+|+++|++|||+|++++..++ ++..|+|.+|++|++||.++|||+|+|+|+|+++|+||+++|+
T Consensus 395 Pi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~ 473 (594)
T TIGR01394 395 PIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKG 473 (594)
T ss_pred CEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCC
Confidence 999999999999999999999999999999997543 5889999999999999999999999999999999999999998
Q ss_pred CC
Q 003165 808 DP 809 (843)
Q Consensus 808 ~~ 809 (843)
+.
T Consensus 474 ~i 475 (594)
T TIGR01394 474 EI 475 (594)
T ss_pred cC
Confidence 74
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1e-75 Score=679.83 Aligned_cols=465 Identities=27% Similarity=0.455 Sum_probs=395.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++|||+|+||+|||||||+++|++.+|.+.+......+++|+.++|++||+|+.+..+++.|+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~---------------- 66 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN---------------- 66 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----------------
Confidence 5799999999999999999999999999886632223479999999999999999999999886
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
+++++|||||||.+|..++..+++.+|++|+|+|+.+|+..||+.+|+.+...++|+++|+||||+. ++++++..+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~vl~ 142 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWVVD 142 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 888776666
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+.+..+... +. ....+|.++|+.+||+-. +...
T Consensus 143 ei~~l~~~l~~~-----~~--------~~~~PVi~~SA~~G~~~~--------------~~~~----------------- 178 (607)
T PRK10218 143 QVFDLFVNLDAT-----DE--------QLDFPIVYASALNGIAGL--------------DHED----------------- 178 (607)
T ss_pred HHHHHHhccCcc-----cc--------ccCCCEEEeEhhcCcccC--------------Cccc-----------------
Confidence 655554432211 00 011245667777776310 0000
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
. .+ .+.+|||+|
T Consensus 179 --------------------------------~--------~~----------------------------~i~~Lld~I 190 (607)
T PRK10218 179 --------------------------------M--------AE----------------------------DMTPLYQAI 190 (607)
T ss_pred --------------------------------c--------cc----------------------------chHHHHHHH
Confidence 0 00 025789999
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
++++|+|. +++++||.++|||++.+++.|+ ++++||+||+|++||.|++...+
T Consensus 191 i~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~- 243 (607)
T PRK10218 191 VDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE- 243 (607)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC-
Confidence 99999993 2457899999999999999998 99999999999999999975321
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 495 (843)
+. ...++|++||.+.|.++.++++|.|||||+++|++++ .+| |||+.. .+.+++++.++ +|++++++.|
T Consensus 244 --~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~--~~~~l~~~~~~-~P~~~~~~~~ 313 (607)
T PRK10218 244 --GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQ--NVEALPALSVD-EPTVSMFFCV 313 (607)
T ss_pred --Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCC--CcccCCCCCCC-CCeEEEEEEe
Confidence 11 1237999999999999999999999999999999997 677 999877 56677788876 9999999999
Q ss_pred CC---CCChhHHHH---HHHHHHh---cCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEe
Q 003165 496 KV---ASDLPKLVE---GLKRLAK---SDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 496 ~~---~~d~~kl~~---aL~~L~~---eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
.+ .+|+.|+.. +|++|.+ +||+|+++.+ +++|++|+|+|||||+|++++|+++ |+++.+++|+|+||
T Consensus 314 ~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 390 (607)
T PRK10218 314 NTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVIFR 390 (607)
T ss_pred CCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEEEE
Confidence 99 789999855 5555555 9999999998 8999999999999999999999999 89999999999999
Q ss_pred ecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCc
Q 003165 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~ 645 (843)
|| + |
T Consensus 391 et--~------------------------------------------------------------------------g-- 394 (607)
T PRK10218 391 EI--D------------------------------------------------------------------------G-- 394 (607)
T ss_pred EE--C------------------------------------------------------------------------C--
Confidence 97 1 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003165 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~L 725 (843)
..
T Consensus 395 --------~k---------------------------------------------------------------------- 396 (607)
T PRK10218 395 --------RK---------------------------------------------------------------------- 396 (607)
T ss_pred --------EE----------------------------------------------------------------------
Confidence 00
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeec
Q 003165 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||++++|.||++++|+|+++|++|||++++++..++ ++..|+|.+|++|++||.++|||+|+|+|+|+++|+||+++
T Consensus 397 lEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~ 475 (607)
T PRK10218 397 QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDV 475 (607)
T ss_pred eCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCC
Confidence 69999999999999999999999999999999997543 58999999999999999999999999999999999999999
Q ss_pred C-CC
Q 003165 806 S-SD 808 (843)
Q Consensus 806 ~-~~ 808 (843)
| ++
T Consensus 476 ~~g~ 479 (607)
T PRK10218 476 RPGE 479 (607)
T ss_pred CCCC
Confidence 9 54
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=7e-74 Score=668.91 Aligned_cols=469 Identities=28% Similarity=0.437 Sum_probs=383.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
...+++|||+|+||+|||||||+++|++.+|.+.+...+ .+++|+.++|++||+|+.+..+.+.|.. .
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~ 69 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------K 69 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------c
Confidence 345689999999999999999999999999998774333 5789999999999999999999888851 1
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
+++++.+||||||||.||..++.++++.||++|+|||+++|++.||...|..+...++|+++|+||+|+. +.+.++
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~ 145 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPER 145 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHH
Confidence 3457899999999999999999999999999999999999999999999988888899999999999987 655333
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
..+.+. ..+.. .+ ..+...|+..|+
T Consensus 146 v~~ei~-------~~lg~-----------~~--~~vi~iSAktG~----------------------------------- 170 (600)
T PRK05433 146 VKQEIE-------DVIGI-----------DA--SDAVLVSAKTGI----------------------------------- 170 (600)
T ss_pred HHHHHH-------HHhCC-----------Cc--ceEEEEecCCCC-----------------------------------
Confidence 222221 11110 00 011222221111
Q ss_pred CCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHH
Q 003165 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALL 333 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (843)
| +..||
T Consensus 171 ------------------------------------------------G--------------------------I~~Ll 176 (600)
T PRK05433 171 ------------------------------------------------G--------------------------IEEVL 176 (600)
T ss_pred ------------------------------------------------C--------------------------HHHHH
Confidence 0 14578
Q ss_pred HHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcC
Q 003165 334 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 413 (843)
Q Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~ 413 (843)
+++++++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 177 ~~I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~ 230 (600)
T PRK05433 177 EAIVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS 230 (600)
T ss_pred HHHHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec
Confidence 888889999831 356899999999999999987 999999999999999999753
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCce
Q 003165 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQFITKNA-TLTNEKEVDAHPIRAMKFSVSPV 488 (843)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv 488 (843)
.+.. ++|.+|+.+.+ +..+++++.||||+++. |+ +++ ++| ||++.......+++++.++ +|+
T Consensus 231 ----~~~~-----~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~ 297 (600)
T PRK05433 231 ----TGKE-----YEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDA--RVGDTITLAKNPAEEPLPGFKEV-KPM 297 (600)
T ss_pred ----CCce-----EEEEEeeccCC-CceECcEEcCCCEEEEeccccccccc--CCCCEEECCCCccccCCCCCCCC-CcE
Confidence 2222 79999996555 89999999999998885 44 444 678 9988762112467777775 999
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEe-----cchhHHHHHHHHHHhhcCCCcEEEEeccEEe
Q 003165 489 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 563 (843)
Q Consensus 489 ~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~ 563 (843)
++++|+|.+.+|.++|.+||++|++|||||.++ .+|+|.++.| ||+|||||+++||+++| |+++.+++|.|+
T Consensus 298 v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~ 374 (600)
T PRK05433 298 VFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVV 374 (600)
T ss_pred EEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEE
Confidence 999999999999999999999999999999997 6899999999 99999999999999999 999999999999
Q ss_pred EeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCC
Q 003165 564 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTG 643 (843)
Q Consensus 564 yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g 643 (843)
|||||++.. .+.+
T Consensus 375 Yreti~~g~---------------~~~~---------------------------------------------------- 387 (600)
T PRK05433 375 YEVTLTDGE---------------VIEV---------------------------------------------------- 387 (600)
T ss_pred EEEEEeCCc---------------EEEE----------------------------------------------------
Confidence 999987521 0000
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCC
Q 003165 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 723 (843)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~ 723 (843)
.| | .++| |+++.+
T Consensus 388 ----~~--------------------------p-~~~p---------------ds~~~~--------------------- 400 (600)
T PRK05433 388 ----DN--------------------------P-SKLP---------------DPGKIE--------------------- 400 (600)
T ss_pred ----EC--------------------------c-ccCC---------------Cccccc---------------------
Confidence 00 1 1222 333221
Q ss_pred eeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecce
Q 003165 724 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHW 802 (843)
Q Consensus 724 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y 802 (843)
+||||||+++|.+|++|+|+||++|++|||++++++..+ +...|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||
T Consensus 401 ~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y 478 (600)
T PRK05433 401 EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGY 478 (600)
T ss_pred eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCc
Confidence 899999999999999999999999999999999999765 37899999999999 999999999999999999999999
Q ss_pred eec
Q 003165 803 DMM 805 (843)
Q Consensus 803 ~~v 805 (843)
++.
T Consensus 479 ~~~ 481 (600)
T PRK05433 479 RES 481 (600)
T ss_pred ccc
Confidence 985
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=8.6e-73 Score=659.16 Aligned_cols=485 Identities=27% Similarity=0.444 Sum_probs=390.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
++|||+|+||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.+..+++.|.. .+++.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g~~ 69 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDGET 69 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCCCE
Confidence 68999999999999999999999999998764333 4789999999999999999999888851 12346
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
+.++|||||||.||..++.++++.||++|+|+|+++|++.||...|..+...++|+++|+||+|+. +.+.++..+.
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~~e 145 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVKKE 145 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999988888899999999999987 6553332222
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003165 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+.+ .+. + . + ..+...|+.+|.
T Consensus 146 l~~-------~lg-~--~--------~--~~vi~vSAktG~--------------------------------------- 166 (595)
T TIGR01393 146 IEE-------VIG-L--D--------A--SEAILASAKTGI--------------------------------------- 166 (595)
T ss_pred HHH-------HhC-C--C--------c--ceEEEeeccCCC---------------------------------------
Confidence 211 111 0 0 0 011122221110
Q ss_pred eecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHHH
Q 003165 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMI 337 (843)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (843)
| ++.||+.++
T Consensus 167 --------------------------------------------G--------------------------I~~Lle~I~ 176 (595)
T TIGR01393 167 --------------------------------------------G--------------------------IEEILEAIV 176 (595)
T ss_pred --------------------------------------------C--------------------------HHHHHHHHH
Confidence 0 145778888
Q ss_pred hcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCC
Q 003165 338 FHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYV 417 (843)
Q Consensus 338 ~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~ 417 (843)
+++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 177 ~~lp~p~-------------------------~~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~---- 226 (595)
T TIGR01393 177 KRVPPPK-------------------------GDPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMS---- 226 (595)
T ss_pred HhCCCCC-------------------------CCCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEec----
Confidence 8999983 1357899999999999999997 999999999999999999753
Q ss_pred CCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceEEEE
Q 003165 418 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVA 492 (843)
Q Consensus 418 ~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl---~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~a 492 (843)
.+.. ++|.+|+.+.+.. .+++++.||||+++. |+ +++ ++| ||++.......+++++.++ +|+++++
T Consensus 227 ~~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~~~ 297 (595)
T TIGR01393 227 TGKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVFAG 297 (595)
T ss_pred CCCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEEEE
Confidence 2222 7999999766655 999999999998885 44 455 678 9988762112367777775 9999999
Q ss_pred EEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEe-----cchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeec
Q 003165 493 VQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 493 Iep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
|+|.+.+|.++|.+||++|.+|||||.++. +|+|.+++| ||+|||||+++||+++| |+++.+++|+|+||||
T Consensus 298 i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yret 374 (595)
T TIGR01393 298 LYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYRVY 374 (595)
T ss_pred EEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEEEE
Confidence 999999999999999999999999999974 788887775 99999999999999999 9999999999999999
Q ss_pred ccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceE
Q 003165 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~ 647 (843)
+.+.. .+.++
T Consensus 375 i~~g~---------------~~~~~------------------------------------------------------- 384 (595)
T TIGR01393 375 LTNGE---------------VIEVD------------------------------------------------------- 384 (595)
T ss_pred ecCCc---------------EEEEE-------------------------------------------------------
Confidence 86421 01110
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003165 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (843)
| | .|+|+.++ -|.|||
T Consensus 385 -~--------------------------p-~~~p~~~~------------------------------------~~~llE 400 (595)
T TIGR01393 385 -N--------------------------P-SDLPDPGK------------------------------------IEHVEE 400 (595)
T ss_pred -C--------------------------c-ccCCCccc------------------------------------ccceeC
Confidence 0 2 25665441 278999
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecceee--
Q 003165 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM-- 804 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~-- 804 (843)
|||+++|.+|++|+|+||++|++|||++++++..++ +...|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 401 P~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 479 (595)
T TIGR01393 401 PYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPSD 479 (595)
T ss_pred CeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccccc
Confidence 999999999999999999999999999999997543 36899999999997 99999999999999999999999997
Q ss_pred -------cCCCCCCC----------chHHHHHHHHHH
Q 003165 805 -------MSSDPLEP----------GTQAAQLVADIR 824 (843)
Q Consensus 805 -------v~~~~~~~----------~~~a~~~~~~~r 824 (843)
+.++|.|. ...+++++++.+
T Consensus 480 ~~~~~~~~n~~~~d~l~~~~~~~~~~~~~~~~~~~l~ 516 (595)
T TIGR01393 480 LVKLDILINGEPVDALSFIVHRDKAYSRGREICEKLK 516 (595)
T ss_pred eEEEEEEECCcccceeEEeeeHHHHHHHHHHHHHHHH
Confidence 34455442 246777776644
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-66 Score=549.40 Aligned_cols=466 Identities=26% Similarity=0.454 Sum_probs=404.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.++|||||++|+|||||||+++||..+|.......-.-++||+...|++|||||-+..+.+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 4689999999999999999999999999987743323579999999999999999999999996
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
+++|||+|||||.||-+|+++.|...|+++|+|||.+|.++||+.+++.|.+.++++|+||||+|++ ++.|+++..
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999887
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
..-.++-++.+--.+ ..| ++.++|+..||+.. ++..
T Consensus 143 ~vfDLf~~L~A~deQ--------LdF-----PivYAS~~~G~a~~-----------------------------~~~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQ--------LDF-----PIVYASARNGTASL-----------------------------DPED-- 178 (603)
T ss_pred HHHHHHHHhCCChhh--------CCC-----cEEEeeccCceecc-----------------------------Cccc--
Confidence 777776666544322 112 78899999998531 0000
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
.. .. ..+|+++|
T Consensus 179 ------~~--------------------------------------~~------------------------m~pLfe~I 190 (603)
T COG1217 179 ------EA--------------------------------------DD------------------------MAPLFETI 190 (603)
T ss_pred ------cc--------------------------------------cc------------------------hhHHHHHH
Confidence 00 00 15789999
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
++|.|+|. .|.++||.++|+-+-.+++.|+ ++.+||++|++++|+.|.++...
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 2468999999999998999998 99999999999999999988532
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep 495 (843)
+. ....||++++-+.|-++.++++|.||||+||+|+++. ..| |+|++. .+.+++.+... +|.+++.+..
T Consensus 244 --g~---~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~--~~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GT---TENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPD--NPEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --Cc---EEeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCC--CccCCCCcccC-CCceEEEEEe
Confidence 22 2247999999999999999999999999999999997 556 999988 67788888776 8999998876
Q ss_pred CCC---------CChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEe
Q 003165 496 KVA---------SDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 496 ~~~---------~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
.+. -...++.+.|.+-.+.+-+|+|+.- +-..+.++|.|||||-|+++.+||+ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 554 1457899999999999999999865 5588999999999999999999998 99999999999999
Q ss_pred ecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCc
Q 003165 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~ 645 (843)
| |.+ .
T Consensus 391 e-idG-----------------------------------~--------------------------------------- 395 (603)
T COG1217 391 E-IDG-----------------------------------V--------------------------------------- 395 (603)
T ss_pred e-cCC-----------------------------------c---------------------------------------
Confidence 8 211 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCee
Q 003165 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~L 725 (843)
.
T Consensus 396 -------------------------------------------------------------------------------~ 396 (603)
T COG1217 396 -------------------------------------------------------------------------------K 396 (603)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeec
Q 003165 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
.||+=.+.|.||+++.|.|+..|..|+|...++.+.++ ++..+...+|..-+.||.++.-++|+|.|.....|+||++.
T Consensus 397 ~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~-G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~ 475 (603)
T COG1217 397 CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGK-GRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV 475 (603)
T ss_pred cCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCCC-CeEEEEEEccCcceeccchheeeccccceeeeecccccccc
Confidence 57888888999999999999999999999999988654 69999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003165 806 SSDP 809 (843)
Q Consensus 806 ~~~~ 809 (843)
.++.
T Consensus 476 ~g~i 479 (603)
T COG1217 476 KGEI 479 (603)
T ss_pred cccc
Confidence 8853
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.5e-66 Score=594.69 Aligned_cols=437 Identities=23% Similarity=0.305 Sum_probs=344.9
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc------CCceEeecCcccccccCeeEeeeeEEEEEeeccccc
Q 003165 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (843)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~------~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
+....++|||+|+||+|||||||+++|++.+|.+.+.. .|....+|+.+.|++||+|+.++...+.|+
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------ 77 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------ 77 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC------
Confidence 34456899999999999999999999999999886520 122346899999999999999999999886
Q ss_pred ccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCcccccc
Q 003165 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~ 166 (843)
++++|+||||||.||..++.++++.+|+||+|+|+++|+..||+.+|+++...++|+++|+||||+.
T Consensus 78 ----------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~--- 144 (526)
T PRK00741 78 ----------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD--- 144 (526)
T ss_pred ----------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc---
Confidence 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003165 167 LQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (843)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (843)
++++.++...+++. +.. .+...++|++.+ +.|. +|+.....+.
T Consensus 145 -~a~~~~~l~~i~~~-------l~~-----------~~~p~~~Pig~~~~f~Gv----------------vdl~~~~~~~ 189 (526)
T PRK00741 145 -GREPLELLDEIEEV-------LGI-----------ACAPITWPIGMGKRFKGV----------------YDLYNDEVEL 189 (526)
T ss_pred -ccCHHHHHHHHHHH-------hCC-----------CCeeEEeccccCCceeEE----------------EEeecceeee
Confidence 88755544433332 210 122336677655 3333 3443333333
Q ss_pred hcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhh--------hhHH
Q 003165 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDL--------MGKA 316 (843)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~--------~~~~ 316 (843)
|.+ ..+ +. .++.+.+++.|+++|++||++ ..+ +|+.. ....
T Consensus 190 ~~~-----~~~-------~~---------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~ 238 (526)
T PRK00741 190 YQP-----GEG-------HT---------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEF 238 (526)
T ss_pred ccc-----CCC-------Cc---------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccch
Confidence 311 000 00 022445667788888888875 211 22210 0122
Q ss_pred HHHHHH-hhhccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeee
Q 003165 317 LMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIP 385 (843)
Q Consensus 317 l~~~i~-~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~ 385 (843)
..+++. ++++|+ +++|||+|++++|+|.++.... ....+ .+.|++|+|||+.+
T Consensus 239 ~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~ 302 (526)
T PRK00741 239 DLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE---------------REVEP-TEEKFSGFVFKIQA 302 (526)
T ss_pred hHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc---------------eeecC-CCCceEEEEEEEEe
Confidence 244444 688997 7999999999999997543210 01112 34679999999984
Q ss_pred ---cCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccc
Q 003165 386 ---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFIT 462 (843)
Q Consensus 386 ---~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~ 462 (843)
+++.|+ ++|+|||||+|++|+.|++ .+++++ +|+++++.++|.++.++++|.|||||++.|++++
T Consensus 303 ~m~~~~~gr-lafvRV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-- 370 (526)
T PRK00741 303 NMDPKHRDR-IAFVRVCSGKFEKGMKVRH----VRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-- 370 (526)
T ss_pred cCCCCcCce-EEEEEEeccEECCCCEEEe----ccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--
Confidence 457776 9999999999999999994 444443 8999999999999999999999999999999998
Q ss_pred cce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHH
Q 003165 463 KNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEI 540 (843)
Q Consensus 463 ~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei 540 (843)
++| |||+.+ +..+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++.++ +|||++|+||||||||+
T Consensus 371 ~~GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV 445 (526)
T PRK00741 371 QIGDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEV 445 (526)
T ss_pred ccCCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHH
Confidence 788 998754 4567888887 9999999999999999999999999999995 999998 99999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEeccEEeEeeccc
Q 003165 541 CLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 541 ~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
+++||+++| ||++.+++|+|++-.-|.
T Consensus 446 ~~~RL~~ey--~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 446 VAHRLKNEY--NVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHHHHHHh--CCEEEEecCCccEEEEEe
Confidence 999999999 999999999999887664
No 22
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=4.6e-64 Score=577.30 Aligned_cols=436 Identities=20% Similarity=0.288 Sum_probs=330.4
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----CC--ceEeecCcccccccCeeEeeeeEEEEEeeccc
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----AG--DVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----~g--~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
+++....++|||+|+||+|+|||||+++|++.+|.+.+.- .| ...++|+.++|++||+|+.++...+.|.
T Consensus 3 ~~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~---- 78 (527)
T TIGR00503 3 DLLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR---- 78 (527)
T ss_pred hhhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC----
Confidence 3455667899999999999999999999999999886520 11 1357999999999999999999999886
Q ss_pred ccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCcccc
Q 003165 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~ 164 (843)
++.+||||||||.||..++.++++.+|++|+|||++.|+..+|+.+|+.+...++|+++|+||+|+.
T Consensus 79 ------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~- 145 (527)
T TIGR00503 79 ------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD- 145 (527)
T ss_pred ------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc-
Confidence 8999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHH
Q 003165 165 LELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMME 242 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 242 (843)
+++++++.+.+++.+.. .+...++|++.+ +.|. +|......
T Consensus 146 ---~~~~~~ll~~i~~~l~~------------------~~~~~~~PIg~~~~f~gv----------------~d~l~~~~ 188 (527)
T TIGR00503 146 ---IRDPLELLDEVENELKI------------------NCAPITWPIGCGKLFKGV----------------YHLLKDET 188 (527)
T ss_pred ---CCCHHHHHHHHHHHhCC------------------CCccEEEEecCCCceeEE----------------EEcccCcc
Confidence 88766655444443221 112235555443 3333 22222222
Q ss_pred HhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHH------HHhcCCCCChHHHhhhhHH
Q 003165 243 RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPM------LQKLGVTMKSEEKDLMGKA 316 (843)
Q Consensus 243 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~------l~~~~~~l~~~el~~~~~~ 316 (843)
++|.+ ...+.....+. ..... . .+.+.++.. +.++++ +++.+.+++.
T Consensus 189 ~~y~~----~~~~~~~~~~~-~~~~~--------~---~~~e~~~~~--~~~~~~~~~le~~~~~~~~~~~--------- 241 (527)
T TIGR00503 189 YLYQS----GTGGTIQAVRQ-VKGLN--------N---PALDSAVGS--DLAQQLRDELELVEGASNEFDL--------- 241 (527)
T ss_pred eecCc----cCCCceeEeeh-hccCC--------C---hhhhhhhhH--HHHHHHHHHHHHHhhhccccCH---------
Confidence 32211 00111111000 00000 0 001111111 122222 2222222221
Q ss_pred HHHHHH-hhhccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeee
Q 003165 317 LMKRVM-QTWLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIP 385 (843)
Q Consensus 317 l~~~i~-~~~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~ 385 (843)
+++. ++++|+ ++.|||+|++|+|+|.++.... ....+ .++|++|+|||+.+
T Consensus 242 --~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~~ 303 (527)
T TIGR00503 242 --AAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQA 303 (527)
T ss_pred --HHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEEe
Confidence 2222 678897 8999999999999997543110 01122 45789999999998
Q ss_pred --c-CCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccc
Q 003165 386 --A-SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFIT 462 (843)
Q Consensus 386 --~-~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~ 462 (843)
| ++.|+ ++|+|||||+|++|++|++ .+++++ +|+++++.++|++++++++|.|||||++.|++++
T Consensus 304 ~mdp~~~gr-iaf~RV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-- 371 (527)
T TIGR00503 304 NMDPKHRDR-VAFMRVVSGKYEKGMKLKH----VRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-- 371 (527)
T ss_pred ccCcccCce-EEEEEEeeeEEcCCCEEEe----cCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc--
Confidence 6 47787 9999999999999999994 444443 8999999999999999999999999999999998
Q ss_pred cce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHH
Q 003165 463 KNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEI 540 (843)
Q Consensus 463 ~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei 540 (843)
++| |||+.. ...+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++.++ +|+|++|+|||||||||
T Consensus 372 ~~GDtl~~~~---~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV 446 (527)
T TIGR00503 372 QIGDTFTQGE---KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDV 446 (527)
T ss_pred ccCCEecCCC---ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHH
Confidence 788 999844 5667788876 9999999999999999999999999999998 999998 99999999999999999
Q ss_pred HHHHHHhhcCCCcEEEEeccEEeE
Q 003165 541 CLKDLQDDFMGGAEIIKSDPVVSF 564 (843)
Q Consensus 541 ~~~rL~~~f~~~v~v~~~~p~V~y 564 (843)
+++||+++| ||++.+++|+|+.
T Consensus 447 ~~~RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 447 VVYRLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred HHHHHHHHh--CCeEEEeCCCceE
Confidence 999999999 9999999999883
No 23
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-64 Score=543.88 Aligned_cols=467 Identities=30% Similarity=0.420 Sum_probs=386.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++||++|++|+|||||||.++||..+|.+.+. .+..+++|....||||||||++...++.|. +++
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~-------------~~~ 123 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK-------------DGQ 123 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------cCC
Confidence 789999999999999999999999999988775 455689999999999999999999999997 255
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
.+.+|+||||||+||..|+.+.+..||||+|||||.+|+++||...+..|.+.++.+|.|+||+|++ .++++++..
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~V~~ 199 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPERVEN 199 (650)
T ss_pred ceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999 999998877
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.++++.. |. .+.+.|+..||+
T Consensus 200 q~~~lF~~~------------------~~--~~i~vSAK~G~~------------------------------------- 222 (650)
T KOG0462|consen 200 QLFELFDIP------------------PA--EVIYVSAKTGLN------------------------------------- 222 (650)
T ss_pred HHHHHhcCC------------------cc--ceEEEEeccCcc-------------------------------------
Confidence 766654421 11 345556555441
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
+..+|++|
T Consensus 223 ------------------------------------------------------------------------v~~lL~AI 230 (650)
T KOG0462|consen 223 ------------------------------------------------------------------------VEELLEAI 230 (650)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 13478899
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
++.+|+|. ...++||.+++|..+.|.++|. ++++||..|.+++||.|..+.
T Consensus 231 I~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~--- 281 (650)
T KOG0462|consen 231 IRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA--- 281 (650)
T ss_pred HhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee---
Confidence 99999993 1357899999999999999998 999999999999999998652
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEec-cccccccce-eeecCCC-CCcccccccccCCCceEEEEE
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQFITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRVAV 493 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~g-l~~~~~~tg-Tl~~~~~-~~~~~~~~~~~~~~Pv~~~aI 493 (843)
++++ .+.+.-.++.+..-...++....+|+||+..| ++.. ..| |+++... .....++..+. +.|++++..
T Consensus 282 -t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvFvg~ 354 (650)
T KOG0462|consen 282 -TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVFVGL 354 (650)
T ss_pred -cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEEecc
Confidence 2222 33566667767667777778888889988877 7777 556 8887651 12334555554 489999999
Q ss_pred EeCCCCChhHHHHHHHHHHhcCCcEEEEEcCcc----ceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeeccc
Q 003165 494 QCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG----EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 494 ep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etg----e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
.|.+.+|...|..++.+|+.+|+++.+..+.++ -+.+++.|.|||+|.++||+++| |.++.+++|.|+||=-..
T Consensus 355 fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 355 FPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVVYS 432 (650)
T ss_pred ccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEEec
Confidence 999999999999999999999999999887544 46999999999999999999999 999999999999995322
Q ss_pred ccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEe
Q 003165 570 EKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVD 649 (843)
Q Consensus 570 ~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~~~ 649 (843)
+.. . +.+..|.
T Consensus 433 ~~~-----------~-------------------------------------------------~~i~np~--------- 443 (650)
T KOG0462|consen 433 NGD-----------E-------------------------------------------------ILISNPA--------- 443 (650)
T ss_pred CCc-----------e-------------------------------------------------eeecChh---------
Confidence 110 0 1111111
Q ss_pred cccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeece
Q 003165 650 MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPV 729 (843)
Q Consensus 650 ~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi 729 (843)
.+| |..... -.|||+
T Consensus 444 -----------------------------~fp---------------~~~~v~---------------------~~lEP~ 458 (650)
T KOG0462|consen 444 -----------------------------LFP---------------DPSDVK---------------------EFLEPY 458 (650)
T ss_pred -----------------------------hCC---------------Ccccch---------------------hhcCce
Confidence 011 100111 139999
Q ss_pred EEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcC-chHHHhhhCCCceEeeeEeccee
Q 003165 730 YMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFG-FSGTLRAATSGQAFPQCVFDHWD 803 (843)
Q Consensus 730 ~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~ 803 (843)
...+|.+|+||+|.|+..++.|||...++...++ +...++-++|++|+.| |-..|.|.|+|.|+|..+|++|+
T Consensus 459 v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~ 532 (650)
T KOG0462|consen 459 VEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ 532 (650)
T ss_pred EEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc
Confidence 9999999999999999999999999999988776 4888999999999998 99999999999999999999999
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.8e-59 Score=494.69 Aligned_cols=471 Identities=28% Similarity=0.438 Sum_probs=380.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..+++||.+|++|.|||||||.++|+..+|.++.+... ..++|++..|+||||||++..+.+.|.. .+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 34689999999999999999999999999998875332 3689999999999999999999999973 34
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHH
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (843)
++.|.+||||||||+||.-|+.++|..|.||+|||||+.|++.||..-...|...++-+|-|+||+|++ .+|++.+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adperv 148 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPERV 148 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHHH
Confidence 568999999999999999999999999999999999999999999998889999999999999999999 9998887
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCC
Q 003165 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (843)
.+.+.+++.- . + . ..+..|+..|
T Consensus 149 k~eIe~~iGi-d-----------------~-~-dav~~SAKtG------------------------------------- 171 (603)
T COG0481 149 KQEIEDIIGI-D-----------------A-S-DAVLVSAKTG------------------------------------- 171 (603)
T ss_pred HHHHHHHhCC-C-----------------c-c-hheeEecccC-------------------------------------
Confidence 7666554320 0 0 0 1111121110
Q ss_pred CceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHH
Q 003165 255 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLE 334 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (843)
+|+ ..+|+
T Consensus 172 ----------------------------------------------~gI--------------------------~~iLe 179 (603)
T COG0481 172 ----------------------------------------------IGI--------------------------EDVLE 179 (603)
T ss_pred ----------------------------------------------CCH--------------------------HHHHH
Confidence 111 45788
Q ss_pred HHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCC
Q 003165 335 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 414 (843)
Q Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~ 414 (843)
+|++.+|+|. .++++|+-|++|..+.|++.|- ++++||+.|++++||.+.+++
T Consensus 180 ~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~- 232 (603)
T COG0481 180 AIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMS- 232 (603)
T ss_pred HHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEe-
Confidence 9999999992 2578999999999999999997 999999999999999999875
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE-ecccccc-ccce-eeecCCCCCcccccccccCCCceEEE
Q 003165 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (843)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i-~gl~~~~-~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (843)
++++ ..|.++.++.- +....+++.||+++-+ +|+++.. ++.| |++....+...++++.+.. .|++.+
T Consensus 233 ---tg~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf~ 302 (603)
T COG0481 233 ---TGKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVFA 302 (603)
T ss_pred ---cCCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEEE
Confidence 2332 56777776554 7888999999999755 3544321 1455 7764332256678888865 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCcc----ceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeec
Q 003165 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESG----EHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 492 aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etg----e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
.+.|.+..|.+.|.+||.+|.-.|-+|.++.+.+. -.-....|-|||||+.+||+|+| ++++-...|.|.|+=.
T Consensus 303 GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 303 GLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVE 380 (603)
T ss_pred eecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEE
Confidence 99999999999999999999999999999765322 45777799999999999999999 9999999999999965
Q ss_pred ccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceE
Q 003165 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~ 647 (843)
.++..+ +..-.|.
T Consensus 381 ~~~g~~------------------------------------------------------------~~i~NPs------- 393 (603)
T COG0481 381 LTDGEE------------------------------------------------------------IEVDNPS------- 393 (603)
T ss_pred EcCCcE------------------------------------------------------------EEecChH-------
Confidence 443210 0000110
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeee
Q 003165 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlE 727 (843)
.+| |. .++ -.+.|
T Consensus 394 -------------------------------~~P---------------~~-----~~I----------------~~i~E 406 (603)
T COG0481 394 -------------------------------DLP---------------DP-----NKI----------------EEIEE 406 (603)
T ss_pred -------------------------------hCC---------------Ch-----hhh----------------heeeC
Confidence 011 00 000 03489
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecceee
Q 003165 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
|+.++.|.+|++|+|.||..++.+||...+++..+. +...+.-.+|++|. ++|-+.|.|.|+|.|+|..+|.+|++
T Consensus 407 P~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 407 PYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred ceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 999999999999999999999999999999987653 57889999999997 49999999999999999999999986
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-51 Score=432.37 Aligned_cols=433 Identities=24% Similarity=0.346 Sum_probs=314.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc--------eEeecCcccccccCeeEeeeeEEEEEeecccccc
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
..+-|+.||+.|+|+|||||++.||...|+|.. +|+ ...+|++..|++|||++.++...|.|.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------- 79 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------- 79 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-------
Confidence 346689999999999999999999999888866 443 347899999999999999999999886
Q ss_pred cccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccc
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~ 167 (843)
++.+||+|||||.||+..+.+.|..+|.||.||||..|+++||..+++-|...++|++-|||||||.
T Consensus 80 ---------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~---- 146 (528)
T COG4108 80 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE---- 146 (528)
T ss_pred ---------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (843)
+-+|-++...+.+.+. +.+.+.+.|+|.|. .|...|.-..+ . -.+
T Consensus 147 ~rdP~ELLdEiE~~L~------------------i~~~PitWPIG~gk--------~F~Gvy~l~~~----~--v~~--- 191 (528)
T COG4108 147 GRDPLELLDEIEEELG------------------IQCAPITWPIGMGK--------DFKGVYHLYND----E--VEL--- 191 (528)
T ss_pred cCChHHHHHHHHHHhC------------------cceecccccccCCc--------ccceeeeeccC----E--EEE---
Confidence 8888776554444332 12334467887773 23333321100 0 011
Q ss_pred cccCcCC---CceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhh
Q 003165 248 NFFDPAT---KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (843)
Q Consensus 248 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (843)
|.+.. +.......+- ..+...+..=+ .+++.+.++ -++ +.+-+-+.+.+ ..+. ..
T Consensus 192 --y~~~~~~~~~~~~~~~~~--~~p~~~~~l~~---~~~~~~~ee-~EL----~~~a~~~Fd~~-------~fl~---G~ 249 (528)
T COG4108 192 --YESGHTDQERRADIVKGL--DNPELDALLGE---DLAEQLREE-LEL----VQGAGNEFDLE-------AFLA---GE 249 (528)
T ss_pred --eccCCCccccccccccCC--CChhHHhhhch---HHHHHHHHH-HHH----HHhhccccCHH-------HHhc---CC
Confidence 11110 0000000000 00000000000 011111110 011 11111111111 1111 45
Q ss_pred hccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCC-CCCeEEEEEEeeecCCCC--c
Q 003165 325 WLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP-NGPLMLYVSKMIPASDKG--R 391 (843)
Q Consensus 325 ~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~plva~VfK~~~~~~~g--~ 391 (843)
+.|+ ++.+||+++++.|+|..++... ....| +..+++||||+....+.. .
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCccccc
Confidence 6665 8999999999999997544210 01122 344999999999754433 2
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecC
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNE 470 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~ 470 (843)
+++|+||.||++.+|+.+. ..++|+. .+++.-..+++++++.+++|.||||+++..-... +.| |++..
T Consensus 313 RIAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~G 381 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTEG 381 (528)
T ss_pred ceeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeecC
Confidence 3999999999999999998 4556655 7999999999999999999999999998754444 556 88865
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhc
Q 003165 471 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDF 549 (843)
Q Consensus 471 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f 549 (843)
. ...|.+++.. .|-+...|..+++....+|.+||.+|++|-- +++... .+++.||...|.||+|++.+||+++|
T Consensus 382 e---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY 456 (528)
T COG4108 382 E---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY 456 (528)
T ss_pred c---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhh
Confidence 4 6778888877 8999999999999999999999999999984 455554 78999999999999999999999999
Q ss_pred CCCcEEEEeccEE
Q 003165 550 MGGAEIIKSDPVV 562 (843)
Q Consensus 550 ~~~v~v~~~~p~V 562 (843)
++++.+.+..+
T Consensus 457 --~ve~~~e~~~~ 467 (528)
T COG4108 457 --NVEAVFEPVNF 467 (528)
T ss_pred --CCeEEEeeccc
Confidence 99998865433
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=6.5e-39 Score=330.56 Aligned_cols=204 Identities=62% Similarity=1.026 Sum_probs=184.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+|++++.+++.|...... ..+++++.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~~~~~~~ 74 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KADGNEYL 74 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------ccCCCceE
Confidence 899999999999999999999999998877678889999999999999999999999988632110 12345789
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHHHH
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFS 179 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~ 179 (843)
++|||||||.+|..++..+++.+|+|++|+|+++|++.||+.+++++...++|+++|+||+|+.+.+++.++++++.+++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCCC-----CCeeeeeecceeecccCccceeeehhhHHHHh
Q 003165 180 RVVENANVIMATYEDPLL-----GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
++++++|.++..+..+.. +.+.|+|..|||.|+|+.+||+|++++||++|
T Consensus 155 ~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 155 RIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 999999999987643211 24679999999999999999999999999998
No 27
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=4.1e-38 Score=311.84 Aligned_cols=174 Identities=47% Similarity=0.857 Sum_probs=165.9
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 638 (843)
+|.|+|||||.+.+...+..+++++|+++|++++||++++.+.|++|.++..++.+.+.+.|+.+||||..++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999998878889999999999999999999999999999998888999999999999999999999999999
Q ss_pred cCCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHH
Q 003165 639 PETTGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 639 P~~~g~~~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 714 (843)
|++.|+|+|+|.+. +.+++++++++|++||++|+++|||||+||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99999999999987 55688999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHhcCCeeeeceEEE
Q 003165 715 YASQLTAKPRLLEPVYMV 732 (843)
Q Consensus 715 ~~al~~a~~~LlEPi~~~ 732 (843)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.7e-36 Score=322.43 Aligned_cols=255 Identities=31% Similarity=0.440 Sum_probs=201.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
||+|+||+|||||||+++|++.+|.+.+. .....+++|+.++|++||+|++++..++.|+ ++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----------------DH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----------------CE
Confidence 79999999999999999999999987652 1112568999999999999999999999996 89
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHHH
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (843)
+++|||||||.+|..++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+++|+||+|+. +++.++..+.+
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~~~~~l 140 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFRVVEQI 140 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 77755544443
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
++.+.. .+....+|++.. +.|. +|+..+.++.|.+. ..++
T Consensus 141 ~~~l~~------------------~~~~~~~Pisa~~~f~g~----------------vd~~~~~a~~~~~~----~~~~ 182 (270)
T cd01886 141 REKLGA------------------NPVPLQLPIGEEDDFRGV----------------VDLIEMKALYWDGE----LGEK 182 (270)
T ss_pred HHHhCC------------------CceEEEeccccCCCceEE----------------EEccccEEEecccC----CCce
Confidence 332221 122235566543 2222 56666666666221 1111
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc-------
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------- 328 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------- 328 (843)
+... +.+....+.+-+.+.+|+|++++.||++||+||++ .+++.+|+. ++|++++. ++++|+
T Consensus 183 ~~~~-----~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~ 252 (270)
T cd01886 183 IEET-----EIPEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGSAFK 252 (270)
T ss_pred eEEe-----cCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCC
Confidence 2222 22333444455566799999999999999999998 789999987 67788776 689997
Q ss_pred ---hHHHHHHHHhcCCCc
Q 003165 329 ---SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ---~~~LLd~i~~~lPsP 343 (843)
++.|||+|++|+|+|
T Consensus 253 ~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 253 NKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=8.6e-33 Score=312.30 Aligned_cols=301 Identities=23% Similarity=0.361 Sum_probs=219.4
Q ss_pred HhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccc
Q 003165 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (843)
Q Consensus 10 ~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (843)
.+.+.+.+..+||+++||+|||||||+++|++..|.+..........+|+.++|++||+|++++...+.++
T Consensus 3 ~~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------- 73 (409)
T CHL00071 3 REKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------- 73 (409)
T ss_pred hhhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC---------
Confidence 35566677889999999999999999999999988775533333457999999999999999987766554
Q ss_pred cCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCcccccccc
Q 003165 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQ 168 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~ 168 (843)
+..++|+|||||.+|..++.++++.+|+|++|||+.+|+..||++++..+...++| +|+++||||+. +
T Consensus 74 -------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~ 142 (409)
T CHL00071 74 -------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----D 142 (409)
T ss_pred -------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----C
Confidence 67899999999999999999999999999999999999999999999999999999 56799999986 4
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCc
Q 003165 169 VDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~ 248 (843)
. ++.+ +.+.+++..++..+..+ +....+.+.|+.+||.....
T Consensus 143 ~--~~~~---~~~~~~l~~~l~~~~~~--------~~~~~ii~~Sa~~g~n~~~~------------------------- 184 (409)
T CHL00071 143 D--EELL---ELVELEVRELLSKYDFP--------GDDIPIVSGSALLALEALTE------------------------- 184 (409)
T ss_pred H--HHHH---HHHHHHHHHHHHHhCCC--------CCcceEEEcchhhccccccc-------------------------
Confidence 2 2322 23334455555432111 11124455677777632100
Q ss_pred ccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccc
Q 003165 249 FFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA 328 (843)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 328 (843)
.. .+. .. ...|...
T Consensus 185 ----~~-~~~-----------------------------~~--------------------------------~~~w~~~ 198 (409)
T CHL00071 185 ----NP-KIK-----------------------------RG--------------------------------ENKWVDK 198 (409)
T ss_pred ----Cc-ccc-----------------------------cc--------------------------------CCchhhh
Confidence 00 000 00 0012222
Q ss_pred hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCE
Q 003165 329 SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLK 408 (843)
Q Consensus 329 ~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~ 408 (843)
...||+++.+++|+|.. +.++||.++|++++..++.|. ++++||+||+++.||.
T Consensus 199 ~~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~ 252 (409)
T CHL00071 199 IYNLMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDT 252 (409)
T ss_pred HHHHHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCE
Confidence 35688888888888721 245799999999999888887 8999999999999999
Q ss_pred EEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eeecCC
Q 003165 409 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (843)
Q Consensus 409 v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~~~~ 471 (843)
|.++++.. +. ..+|.+|... ..++++|.|||+|++. |++....+.| +|++.+
T Consensus 253 v~i~p~~~--~~-----~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 253 VEIVGLRE--TK-----TTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEEeeCCC--Cc-----EEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 98764321 11 2688888753 2478999999999664 6654334667 777653
No 30
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.8e-33 Score=299.14 Aligned_cols=246 Identities=24% Similarity=0.288 Sum_probs=186.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc-------CCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-------AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~-------~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
++|||+|+||+|+|||||+++|++.+|.+.+.- .| ..++|+.++|++||+|+..+...+.|.
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~---------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYR---------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeC----------
Confidence 479999999999999999999999999887621 12 347899999999999999999999986
Q ss_pred CcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCC
Q 003165 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~ 170 (843)
+++++|||||||.+|..++..+++.+|++|+|+|++.|+..+++.+|+++...++|+++|+||+|+. +++
T Consensus 70 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~a~ 139 (267)
T cd04169 70 ------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----GRD 139 (267)
T ss_pred ------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----CCC
Confidence 8999999999999999999999999999999999999999999999999888899999999999998 777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCc
Q 003165 171 GEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~ 248 (843)
..++.+.+++ .+.. .+...++|++.+ +.|. +|+..+.++.|.+
T Consensus 140 ~~~~~~~l~~-------~l~~-----------~~~~~~~Pi~~~~~~~g~----------------vd~~~~~a~~~~~- 184 (267)
T cd04169 140 PLELLDEIEE-------ELGI-----------DCTPLTWPIGMGKDFKGV----------------YDRRTGEVELYDR- 184 (267)
T ss_pred HHHHHHHHHH-------HHCC-----------CceeEEecccCCCceEEE----------------EEhhhCEEEEecC-
Confidence 4443333332 2210 122236666654 2232 5565555555521
Q ss_pred ccCcCCC-ceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhc
Q 003165 249 FFDPATK-KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWL 326 (843)
Q Consensus 249 ~~~~~~~-~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~ 326 (843)
+.++ .+... ..+. .+.+.+++.|+++||+|+++ .+++.+++. ..+.+++. ++++
T Consensus 185 ---~~~~~~~~~~-----~~p~-----------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~ 240 (267)
T cd04169 185 ---GAGGATIAPE-----ETKG-----------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELT 240 (267)
T ss_pred ---CCCCccceec-----cCCc-----------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEE
Confidence 1111 01111 0011 12377888999999999997 566666654 45556655 6899
Q ss_pred cc----------hHHHHHHHHhcCCCc
Q 003165 327 PA----------SSALLEMMIFHLPSP 343 (843)
Q Consensus 327 P~----------~~~LLd~i~~~lPsP 343 (843)
|+ ++.|||+|++|+|+|
T Consensus 241 Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 241 PVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EEEecccccCcCHHHHHHHHHHHCCCC
Confidence 97 899999999999998
No 31
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=4.4e-33 Score=291.35 Aligned_cols=222 Identities=33% Similarity=0.451 Sum_probs=181.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc----eEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
||+++||+|+|||||+++|++.+|.+.+ .|+ .+++|+.++|++||+|+..+...+.|+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~---------------- 62 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTDTMELERQRGITIFSAVASFQWE---------------- 62 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCCCchhHhhCCCceeeeeEEEEEC----------------
Confidence 7999999999999999999999998876 232 468899999999999999999999886
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
++++++||||||.+|..++..+++.+|++++|+|+.+|++.+++.+|+.+.+.++|.++|+||+|+. +++.++..+
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~~~~ 138 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEKVYQ 138 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 887555444
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+++ .+... +.+.++| +|.+. ++.
T Consensus 139 ~i~~---~~~~~---------------~~~~~~p------~~~~~---------------------------~~~----- 162 (237)
T cd04168 139 EIKE---KLSSD---------------IVPMQKV------GLAPN---------------------------ICE----- 162 (237)
T ss_pred HHHH---HHCCC---------------eEEEECC------cEeee---------------------------eee-----
Confidence 3333 22211 1112223 12110 000
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc-------
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------- 328 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------- 328 (843)
.. +.+ .+|+|++++.||++||+||++ .+++.+|+. ++|++++. ++++|+
T Consensus 163 ~~-------~~~-----------~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gsa~~ 219 (237)
T cd04168 163 TN-------EID-----------DEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGSALK 219 (237)
T ss_pred ee-------ecc-----------HHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEccccC
Confidence 00 011 378999999999999999997 789999987 67777776 689997
Q ss_pred ---hHHHHHHHHhcCCCc
Q 003165 329 ---SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ---~~~LLd~i~~~lPsP 343 (843)
++.|||++++|+|||
T Consensus 220 ~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 220 GIGIEELLEGITKLFPTS 237 (237)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 899999999999998
No 32
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=9.4e-33 Score=275.84 Aligned_cols=173 Identities=65% Similarity=1.101 Sum_probs=158.9
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 638 (843)
+|.|+|||||.+.+...+..+++++|++++++++|||.++.+.|++|........+.+.+.+...++|+..++++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777888999999999999999999999999998876555555566677789999999999999999
Q ss_pred cCCCCCceEEecccCccc----hHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHH
Q 003165 639 PETTGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 639 P~~~g~~~~~~~~~g~~~----~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~ 714 (843)
|.+.|+|+|+|.+.+.++ +++++++|++||++|+++|||||+||+||+|+|.|+.+|.++.+...+|+++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999988777 8999999999999999999999999999999999999998766777899999999999
Q ss_pred HHHHHhcCCeeeeceEE
Q 003165 715 YASQLTAKPRLLEPVYM 731 (843)
Q Consensus 715 ~~al~~a~~~LlEPi~~ 731 (843)
++||++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 33
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-31 Score=284.37 Aligned_cols=286 Identities=28% Similarity=0.409 Sum_probs=209.1
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEEE
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYY 79 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (843)
..+..-|++++||+|||||||+.+|+|..|.++.. ..|+ .|++|..++||+||+||+.+...|..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34556799999999999999999999999999763 2333 57999999999999999999888876
Q ss_pred eecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHcCCCc
Q 003165 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 152 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~~~~p 152 (843)
+ .+.++|+|||||.||..+|+.++++||+|||||||..| +.+||++++-.+...|+.
T Consensus 83 ~----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~ 146 (428)
T COG5256 83 D----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIK 146 (428)
T ss_pred C----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCc
Confidence 5 67899999999999999999999999999999999998 999999999999999986
Q ss_pred -eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhh
Q 003165 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 -~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
+|+++||||.. .|| .++++++..+++.++..+...+. ++.|-|. ||+.|-..+
T Consensus 147 ~lIVavNKMD~v----~wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIPi-------Sg~~G~Nl~---------- 200 (428)
T COG5256 147 QLIVAVNKMDLV----SWD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIPI-------SGFKGDNLT---------- 200 (428)
T ss_pred eEEEEEEccccc----ccC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEec-------ccccCCccc----------
Confidence 66799999999 888 45677777777776655443321 3444443 334332110
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHh
Q 003165 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (843)
+..+ ..-| |+ .
T Consensus 201 ----~~s~--~~pW----Y~--------G--------------------------------------------------- 211 (428)
T COG5256 201 ----KKSE--NMPW----YK--------G--------------------------------------------------- 211 (428)
T ss_pred ----ccCc--CCcC----cc--------C---------------------------------------------------
Confidence 0000 0111 11 0
Q ss_pred hhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCc
Q 003165 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 391 (843)
..||+++. .+..|.. .-+.||..-|-.++.-...|.
T Consensus 212 ------------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~gt 247 (428)
T COG5256 212 ------------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIGT 247 (428)
T ss_pred ------------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCce
Confidence 11223332 3333310 035799999999987666677
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccceeeec
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNATLTN 469 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tgTl~~ 469 (843)
+..+||-||.|++||.|++...+ . .-.|+.+.. ..++++.+.+||.+.+ +|++..-++.|.++.
T Consensus 248 -v~vGrVEsG~i~~g~~v~~~p~~-----~----~~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~ 313 (428)
T COG5256 248 -VPVGRVESGVIKPGQKVTFMPAG-----V----VGEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIG 313 (428)
T ss_pred -EEEEEEeeeeeccCCEEEEecCc-----c----eEEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEec
Confidence 88889999999999999986422 1 145666653 3788999999999876 465554346674443
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-31 Score=301.77 Aligned_cols=287 Identities=25% Similarity=0.359 Sum_probs=204.9
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
...+..+||+++||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.++
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~------------- 73 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE------------- 73 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-------------
Confidence 3456689999999999999999999986543321111111236899999999999999876655443
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccccCCHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~ 172 (843)
++.++|||||||.+|..++.++++.+|++++|||+.+|+.+||++++..+...++| +|+++||||+. .. +
T Consensus 74 ---~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~~--~ 144 (394)
T PRK12736 74 ---KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----DD--E 144 (394)
T ss_pred ---CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----ch--H
Confidence 67899999999999999999999999999999999999999999999999999999 56799999976 32 2
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003165 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
+.+ +.+.++++..+..+... +...++...|+.+|+.
T Consensus 145 ~~~---~~i~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~--------------------------------- 180 (394)
T PRK12736 145 ELL---ELVEMEVRELLSEYDFP--------GDDIPVIRGSALKALE--------------------------------- 180 (394)
T ss_pred HHH---HHHHHHHHHHHHHhCCC--------cCCccEEEeecccccc---------------------------------
Confidence 222 22333444444322110 0011223333322210
Q ss_pred CCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHH
Q 003165 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSAL 332 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 332 (843)
. . ..|.+....|
T Consensus 181 ------------------------------------~-------------~-------------------~~~~~~i~~L 192 (394)
T PRK12736 181 ------------------------------------G-------------D-------------------PKWEDAIMEL 192 (394)
T ss_pred ------------------------------------C-------------C-------------------CcchhhHHHH
Confidence 0 0 0122223567
Q ss_pred HHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEc
Q 003165 333 LEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIM 412 (843)
Q Consensus 333 Ld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~ 412 (843)
++++.+++|.|.. +.++||.++|++++..++.|. ++.+||++|+|+.||.|+++
T Consensus 193 l~~l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~ 246 (394)
T PRK12736 193 MDAVDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIV 246 (394)
T ss_pred HHHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEe
Confidence 8888888987721 235799999999999888887 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 413 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
+.+. + ...+|.+|.. ...++++|.|||++++ .|++....+.| +||+.+
T Consensus 247 p~~~--~-----~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 247 GIKE--T-----QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred cCCC--C-----eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 5321 1 1268888875 3568899999999966 67754334567 787654
No 35
>PLN03126 Elongation factor Tu; Provisional
Probab=99.97 E-value=1e-30 Score=297.49 Aligned_cols=302 Identities=24% Similarity=0.345 Sum_probs=214.8
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccc
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
+.+.++..+..+||+++||+|||||||+++|++..+.+..........+|+.++|++||+|++.....+.++
T Consensus 71 ~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-------- 142 (478)
T PLN03126 71 ARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE-------- 142 (478)
T ss_pred HHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------
Confidence 344455567789999999999999999999999988776543334467999999999999999887777664
Q ss_pred ccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccc
Q 003165 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLEL 167 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~ 167 (843)
++.++|||||||.+|..++..+++.+|+|++||||.+|+.+||+++|..+...++| +|+++||||+.
T Consensus 143 --------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~---- 210 (478)
T PLN03126 143 --------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV---- 210 (478)
T ss_pred --------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc----
Confidence 77999999999999999999999999999999999999999999999999999999 56799999986
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (843)
. .++.+ +.+.++++.++..+..+ +....+...|+.+||..... +
T Consensus 211 ~--~~~~~---~~i~~~i~~~l~~~g~~--------~~~~~~vp~Sa~~g~n~~~~-----------------------~ 254 (478)
T PLN03126 211 D--DEELL---ELVELEVRELLSSYEFP--------GDDIPIISGSALLALEALME-----------------------N 254 (478)
T ss_pred C--HHHHH---HHHHHHHHHHHHhcCCC--------cCcceEEEEEcccccccccc-----------------------c
Confidence 4 23333 33334555555432111 01112334566665522100 0
Q ss_pred cccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhcc
Q 003165 248 NFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP 327 (843)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P 327 (843)
.. ... +. . -| ..
T Consensus 255 ~~-------~~~---g~----~---------~w---------------------------------------------y~ 266 (478)
T PLN03126 255 PN-------IKR---GD----N---------KW---------------------------------------------VD 266 (478)
T ss_pred cc-------ccc---CC----C---------ch---------------------------------------------hh
Confidence 00 000 00 0 01 00
Q ss_pred chHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCC
Q 003165 328 ASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGL 407 (843)
Q Consensus 328 ~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~ 407 (843)
....||+++.++.|.|.. +.+.|+.++|..++..++.|. +..+||.+|+|+.||
T Consensus 267 ~i~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~Gd 320 (478)
T PLN03126 267 KIYELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKVGE 320 (478)
T ss_pred hHHHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEecCC
Confidence 013467777777766621 135789999999988888886 899999999999999
Q ss_pred EEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 408 KVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 408 ~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
.|+++..+ . ....+|..|... ..++++|.|||.+++ .|++....+.| .|++..
T Consensus 321 ~v~i~p~~----~---~~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 321 TVDIVGLR----E---TRSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred EEEEecCC----C---ceEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 99986321 1 112578888743 478999999999888 46554333556 777653
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=99.97 E-value=1.2e-30 Score=293.79 Aligned_cols=292 Identities=22% Similarity=0.319 Sum_probs=208.6
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
+.....+...||+++||+|||||||+++|++..+...+......+.+|..++|++||+|++.+...+.++
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------- 73 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------- 73 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------
Confidence 4455667789999999999999999999998544222111111347899999999999999876665443
Q ss_pred CcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccccccccC
Q 003165 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQV 169 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~ 169 (843)
+..++|||||||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+. +
T Consensus 74 ------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~- 142 (396)
T PRK12735 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D- 142 (396)
T ss_pred ------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----c-
Confidence 6789999999999999999999999999999999999999999999999999999976 589999986 3
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003165 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
.++.+ ..+.+++..++..+... +...++.+.|+.+||... . . |
T Consensus 143 -~~~~~---~~~~~ei~~~l~~~~~~--------~~~~~ii~~Sa~~g~n~~-----------------~--~--~---- 185 (396)
T PRK12735 143 -DEELL---ELVEMEVRELLSKYDFP--------GDDTPIIRGSALKALEGD-----------------D--D--E---- 185 (396)
T ss_pred -hHHHH---HHHHHHHHHHHHHcCCC--------cCceeEEecchhccccCC-----------------C--C--C----
Confidence 12222 22333444444432111 111133445555444100 0 0 0
Q ss_pred cCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccch
Q 003165 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPAS 329 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 329 (843)
.|.+..
T Consensus 186 --------------------------------------------------------------------------~w~~~~ 191 (396)
T PRK12735 186 --------------------------------------------------------------------------EWEAKI 191 (396)
T ss_pred --------------------------------------------------------------------------cccccH
Confidence 111112
Q ss_pred HHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEE
Q 003165 330 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKV 409 (843)
Q Consensus 330 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v 409 (843)
..||+++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.|
T Consensus 192 ~~Ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v 245 (396)
T PRK12735 192 LELMDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEV 245 (396)
T ss_pred HHHHHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEE
Confidence 4578888888887721 235799999999998888886 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 410 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 410 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
++++.+ .. ...+|..|.. ...++++|.|||.+++ .|++....+.| +||+.+
T Consensus 246 ~i~p~~--~~-----~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 246 EIVGIK--ET-----QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EEecCC--CC-----eEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 987422 01 1257888774 3578999999999988 56654334556 777654
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=2.2e-30 Score=291.79 Aligned_cols=288 Identities=22% Similarity=0.340 Sum_probs=202.0
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc
Q 003165 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (843)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
+++.++.+||+++||+|||||||+++|++......+......+.+|..++|++||+|++.+...+.++
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------ 73 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------ 73 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC------------
Confidence 34556789999999999999999999986533221111111347999999999999999876665443
Q ss_pred CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccccccccCCH
Q 003165 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 171 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~ 171 (843)
++.++|||||||.+|..++.++++.+|++++|+|+.+|+..||++++..+...++|.+ +++||||+. +.
T Consensus 74 ----~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~----~~-- 143 (394)
T TIGR00485 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV----DD-- 143 (394)
T ss_pred ----CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC----CH--
Confidence 6789999999999999999999999999999999999999999999999999999977 589999976 32
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
++. ++.+.++++..+..+... +...++...|+..|+.
T Consensus 144 ~~~---~~~~~~~i~~~l~~~~~~--------~~~~~ii~vSa~~g~~-------------------------------- 180 (394)
T TIGR00485 144 EEL---LELVEMEVRELLSEYDFP--------GDDTPIIRGSALKALE-------------------------------- 180 (394)
T ss_pred HHH---HHHHHHHHHHHHHhcCCC--------ccCccEEECccccccc--------------------------------
Confidence 222 222333444444322111 0001222233322210
Q ss_pred cCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHH
Q 003165 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSA 331 (843)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 331 (843)
+. . -| ++ ....
T Consensus 181 -----------g~----~---------~~--~~-------------------------------------------~~~~ 191 (394)
T TIGR00485 181 -----------GD----A---------EW--EA-------------------------------------------KILE 191 (394)
T ss_pred -----------cC----C---------ch--hH-------------------------------------------hHHH
Confidence 00 0 00 00 0134
Q ss_pred HHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEE
Q 003165 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (843)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v 411 (843)
||+++.+++|.|.. +.++||.++|+.++..++.|. ++.+||.+|+|+.||.|++
T Consensus 192 ll~~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 192 LMDAVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEE
Confidence 67777778887721 235799999999998888886 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
.+.. .+. ..+|..|.. ...++++|.|||.|++ .|++..-.+.| +|++..
T Consensus 246 ~p~~--~~~-----~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 246 VGLK--DTR-----KTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred ecCC--CCc-----EEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 6421 111 268888875 2467899999999977 56644323556 777653
No 38
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.97 E-value=1.7e-30 Score=294.82 Aligned_cols=290 Identities=24% Similarity=0.325 Sum_probs=205.2
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEE
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (843)
...+..+||+++||+|||||||+++|++.+|.+.+.. .|. .+++|..++|++||+|++.+...+.
T Consensus 2 ~~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~ 81 (447)
T PLN00043 2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE 81 (447)
T ss_pred CCCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec
Confidence 3445678999999999999999999999999876531 111 3589999999999999999877776
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-------cccHHHHHHHHHcCCC
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERI 151 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~qt~~~l~~~~~~~~ 151 (843)
+. ++.++|||||||.||..++..+++.+|+||||||+.+|. ..||+++|..+...++
T Consensus 82 ~~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi 145 (447)
T PLN00043 82 TT----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGV 145 (447)
T ss_pred CC----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCC
Confidence 65 889999999999999999999999999999999999983 2799999999999999
Q ss_pred ce-EEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhh
Q 003165 152 RP-VLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 230 (843)
Q Consensus 152 p~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 230 (843)
|. |+++||||+. ..+ ....++.+++++++.++..+..+ +....+...|+++|....-
T Consensus 146 ~~iIV~vNKmD~~----~~~--~~~~~~~~i~~ei~~~l~~~g~~--------~~~~~~ipiSa~~G~ni~~-------- 203 (447)
T PLN00043 146 KQMICCCNKMDAT----TPK--YSKARYDEIVKEVSSYLKKVGYN--------PDKIPFVPISGFEGDNMIE-------- 203 (447)
T ss_pred CcEEEEEEcccCC----chh--hhHHHHHHHHHHHHHHHHHcCCC--------cccceEEEEeccccccccc--------
Confidence 75 6799999976 222 22356777777777777643211 1111222234444431100
Q ss_pred hccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHH
Q 003165 231 SKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK 310 (843)
Q Consensus 231 ~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 310 (843)
... ..-| |+
T Consensus 204 ------~~~--~~~W----y~----------------------------------------------------------- 212 (447)
T PLN00043 204 ------RST--NLDW----YK----------------------------------------------------------- 212 (447)
T ss_pred ------ccc--CCcc----cc-----------------------------------------------------------
Confidence 000 0001 00
Q ss_pred hhhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCC
Q 003165 311 DLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKG 390 (843)
Q Consensus 311 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 390 (843)
-..||+++.+ +|.|. .+.+.||.+.|..++..++.|
T Consensus 213 ------------------g~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~v~~~~g~G 248 (447)
T PLN00043 213 ------------------GPTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQDVYKIGGIG 248 (447)
T ss_pred ------------------hHHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEEEEEeCCcE
Confidence 0124444433 34441 013578999999988877777
Q ss_pred cceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-ee
Q 003165 391 RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TL 467 (843)
Q Consensus 391 ~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl 467 (843)
. +..+||.+|+|+.||.|.++. . +. ..+|..|.. ...++++|.|||.+++. +++...++.| .|
T Consensus 249 ~-vv~G~V~~G~l~~Gd~v~~~P-~---~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl 314 (447)
T PLN00043 249 T-VPVGRVETGVIKPGMVVTFGP-T---GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVA 314 (447)
T ss_pred E-EEEEEEECCEEeeCCEEEEcC-C---CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEE
Confidence 6 899999999999999999752 1 11 268888874 35789999999998874 4432223556 66
Q ss_pred ecC
Q 003165 468 TNE 470 (843)
Q Consensus 468 ~~~ 470 (843)
++.
T Consensus 315 ~~~ 317 (447)
T PLN00043 315 SNS 317 (447)
T ss_pred ccC
Confidence 654
No 39
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=1e-29 Score=301.69 Aligned_cols=314 Identities=19% Similarity=0.284 Sum_probs=223.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+|+||+|||||||+++|... .+. ....+|+|+......+.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~--~v~--------------~~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKT--NVA--------------AGEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--Ccc--------------ccccCceeeeccEEEEEEC----------------
Confidence 35679999999999999999999431 111 1124688988887777775
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
++.++|||||||.+|...+.++++.+|++|||||+++|+.+||.++|.++...++|+|+++||||+. +++++.+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~V~~ 411 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDRVKQ 411 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 776544433
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+ .+.....+. +.+ .+...|+.+|.+.
T Consensus 412 eL~~----~~~~~e~~g----~~v-------p~vpvSAktG~GI------------------------------------ 440 (787)
T PRK05306 412 ELSE----YGLVPEEWG----GDT-------IFVPVSAKTGEGI------------------------------------ 440 (787)
T ss_pred HHHH----hcccHHHhC----CCc-------eEEEEeCCCCCCc------------------------------------
Confidence 3221 111111000 000 1111232222110
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
..|++++
T Consensus 441 -------------------------------------------------------------------------~eLle~I 447 (787)
T PRK05306 441 -------------------------------------------------------------------------DELLEAI 447 (787)
T ss_pred -------------------------------------------------------------------------hHHHHhh
Confidence 0011111
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
... + +... ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 448 ~~~--~--e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g---- 499 (787)
T PRK05306 448 LLQ--A--EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG---- 499 (787)
T ss_pred hhh--h--hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC----
Confidence 100 0 0000 013456889999999999999887 99999999999999999852
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCC----------------------
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV---------------------- 473 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~---------------------- 473 (843)
.+.++++.|.+....++++|.|||+|+|.||+++ ..+| ||+.....
T Consensus 500 ----------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 568 (787)
T PRK05306 500 ----------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQ 568 (787)
T ss_pred ----------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567888888888889999999999999999875 3466 77733210
Q ss_pred CcccccccccC----CCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhH
Q 003165 474 DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELH 537 (843)
Q Consensus 474 ~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElH 537 (843)
....+..+..+ --+.+.+.|++...+..+.|..+|.+|..+++.+.+ +-+|.|.+.
T Consensus 569 ~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i--------~~~~vG~it 628 (787)
T PRK05306 569 QRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNI--------IHSGVGAIT 628 (787)
T ss_pred cccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEE--------EeeccCCCC
Confidence 01122222111 123699999999999999999999999999998876 445667664
No 40
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.97 E-value=8.5e-31 Score=280.60 Aligned_cols=252 Identities=26% Similarity=0.371 Sum_probs=192.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccc---cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
||+++||+|+|||||+++|++..|.+.+. ..| .+.+|+.++|++||+|+......+.|. +
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------------~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK----------------G 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC----------------C
Confidence 79999999999999999999998887652 122 467899999999999999998888886 7
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
+.+++||||||.+|..++..+++.+|++++|+|++.|...++..+|+++...++|.++|+||+|+. +.+.++..+.
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~~~~~ 139 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDKTLAA 139 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999998 7764444333
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003165 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+++ .+.. .+...++|...+ +.|+ +|......+.|.+ ..
T Consensus 140 l~~-------~~~~-----------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~~-----~~- 179 (268)
T cd04170 140 LQE-------AFGR-----------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYSP-----GA- 179 (268)
T ss_pred HHH-------HhCC-----------CeEEEEecccCCCceeEE----------------EEcccCEEEEccC-----CC-
Confidence 333 2210 112234455433 3333 2333333333421 11
Q ss_pred ceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc------
Q 003165 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------ 328 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 328 (843)
..... +.+......+.+.+.+|+|.+++.||++||+||++ .+++++|+. +.|++++. +.++|+
T Consensus 180 ~~~~~-----~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~ 249 (268)
T cd04170 180 PSEEI-----EIPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCGSAL 249 (268)
T ss_pred cceec-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEeeCC
Confidence 01111 22333444445556789999999999999999997 789999987 67777776 678886
Q ss_pred ----hHHHHHHHHhcCCCc
Q 003165 329 ----SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ----~~~LLd~i~~~lPsP 343 (843)
++.|||++.+|+|+|
T Consensus 250 ~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 250 TNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 899999999999998
No 41
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=6.4e-30 Score=287.52 Aligned_cols=292 Identities=22% Similarity=0.342 Sum_probs=205.4
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
+...+.+..+||+++||+|||||||+++|++......+........+|+.++|++||+|++++...+.++
T Consensus 4 ~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~---------- 73 (396)
T PRK00049 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE---------- 73 (396)
T ss_pred hhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC----------
Confidence 3445567789999999999999999999998542211111111237899999999999999886665443
Q ss_pred CcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccccccccC
Q 003165 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQV 169 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~ 169 (843)
+..++|+|||||.+|..++..++..+|++++|||+.+|+.+||++++..+...++|.+ +++||||+. +
T Consensus 74 ------~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~- 142 (396)
T PRK00049 74 ------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D- 142 (396)
T ss_pred ------CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c-
Confidence 6789999999999999999999999999999999999999999999999999999976 589999986 4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003165 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
.++. ++.+.++++.++..+... +....+...|+.+||...
T Consensus 143 -~~~~---~~~~~~~i~~~l~~~~~~--------~~~~~iv~iSa~~g~~~~---------------------------- 182 (396)
T PRK00049 143 -DEEL---LELVEMEVRELLSKYDFP--------GDDTPIIRGSALKALEGD---------------------------- 182 (396)
T ss_pred -hHHH---HHHHHHHHHHHHHhcCCC--------ccCCcEEEeecccccCCC----------------------------
Confidence 2222 223333444444432111 111122334444433100
Q ss_pred cCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccch
Q 003165 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPAS 329 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 329 (843)
.. ..|....
T Consensus 183 ---~~--------------------------------------------------------------------~~w~~~~ 191 (396)
T PRK00049 183 ---DD--------------------------------------------------------------------EEWEKKI 191 (396)
T ss_pred ---Cc--------------------------------------------------------------------ccccccH
Confidence 00 0011112
Q ss_pred HHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEE
Q 003165 330 SALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKV 409 (843)
Q Consensus 330 ~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v 409 (843)
..||+++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|++++||.|
T Consensus 192 ~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v 245 (396)
T PRK00049 192 LELMDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEV 245 (396)
T ss_pred HHHHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEE
Confidence 4578888888887721 135789999998888788886 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 410 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 410 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
++++.. .+. ..+|..|... .+++++|.|||.+++ .|++......| +||+.+
T Consensus 246 ~i~p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 246 EIVGIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EEeecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 987532 111 2578888753 468999999999888 56543223456 777653
No 42
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.97 E-value=3.6e-30 Score=292.45 Aligned_cols=289 Identities=24% Similarity=0.333 Sum_probs=202.5
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CC--c---eEeecCcccccccCeeEeeeeEEEEE
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG--D---VRMTDTRADEAERGITIKSTGISLYY 79 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g--~---~~~~d~~~~E~~rgiTi~~~~~~~~~ 79 (843)
..+...||+++||+|||||||+++|++.+|.+.+.. .| + .+++|+.++|++||+|++.+...+.|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 345678999999999999999999999999887531 12 2 24799999999999999998877776
Q ss_pred eecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-------cccHHHHHHHHHcCCCc
Q 003165 80 EMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR 152 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~qt~~~l~~~~~~~~p 152 (843)
+ ++.++|||||||.+|..++..+++.+|+|+||||+.+|+ .+||+++|..+...++|
T Consensus 83 ~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 83 P----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred C----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC
Confidence 5 889999999999999999999999999999999999997 58999999999999998
Q ss_pred e-EEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhh
Q 003165 153 P-VLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~-ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
. |+++||||+... +++ ..++.++.+++...+...... +...++...|+..|....
T Consensus 147 ~iiv~vNKmD~~~~--~~~----~~~~~~i~~~i~~~l~~~g~~--------~~~~~~ipiSa~~g~ni~---------- 202 (446)
T PTZ00141 147 QMIVCINKMDDKTV--NYS----QERYDEIKKEVSAYLKKVGYN--------PEKVPFIPISGWQGDNMI---------- 202 (446)
T ss_pred eEEEEEEccccccc--hhh----HHHHHHHHHHHHHHHHhcCCC--------cccceEEEeecccCCCcc----------
Confidence 5 579999996511 233 234666666666665432111 111122233444332110
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHh
Q 003165 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (843)
+... ...| |+
T Consensus 203 ----~~~~--~~~W----y~------------------------------------------------------------ 212 (446)
T PTZ00141 203 ----EKSD--NMPW----YK------------------------------------------------------------ 212 (446)
T ss_pred ----cCCC--CCcc----cc------------------------------------------------------------
Confidence 0000 0011 00
Q ss_pred hhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCc
Q 003165 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 391 (843)
-..|++++.++ +.|. .+.+.|+.++|..++..++.|.
T Consensus 213 -----------------G~tL~~~l~~~-~~~~-------------------------~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 213 -----------------GPTLLEALDTL-EPPK-------------------------RPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred -----------------hHHHHHHHhCC-CCCC-------------------------cCCCCCeEEEEEEEEecCCceE
Confidence 01244444332 3331 0135789999999888777776
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eee
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~ 468 (843)
+..+||.+|+|+.||.|.++.. .. ..+|.+|.. ...++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~i~P~-----~~----~~~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 250 -VPVGRVETGILKPGMVVTFAPS-----GV----TTEVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred -EEEEEEEcceEecCCEEEEccC-----Cc----EEEEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 8899999999999999998632 11 268888875 34679999999999884 4333223456 666
Q ss_pred cC
Q 003165 469 NE 470 (843)
Q Consensus 469 ~~ 470 (843)
+.
T Consensus 316 ~~ 317 (446)
T PTZ00141 316 DS 317 (446)
T ss_pred cC
Confidence 54
No 43
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-30 Score=261.74 Aligned_cols=288 Identities=23% Similarity=0.362 Sum_probs=197.5
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc
Q 003165 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (843)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
....+..-||+.+||+|||||||+.++...........+-.....|..|+|++|||||+.+.+.+...
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~------------ 73 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA------------ 73 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC------------
Confidence 34456788999999999999999999965432111111222345788999999999999987766554
Q ss_pred CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccccccccCCH
Q 003165 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 171 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~ 171 (843)
+.++-.+|||||.||.+.|+.+..++|+|||||+|.+|.++||++++..+.+.++|.| +|+||+|+. + |
T Consensus 74 ----~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----d-d- 143 (394)
T COG0050 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----D-D- 143 (394)
T ss_pred ----CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc----C-c-
Confidence 7789999999999999999999999999999999999999999999999999999866 599999987 3 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
++. +...-.++..+|..|.-. -...+|+.+|++.. +
T Consensus 144 ~el---lelVemEvreLLs~y~f~--------gd~~Pii~gSal~a--------------------------l------- 179 (394)
T COG0050 144 EEL---LELVEMEVRELLSEYGFP--------GDDTPIIRGSALKA--------------------------L------- 179 (394)
T ss_pred HHH---HHHHHHHHHHHHHHcCCC--------CCCcceeechhhhh--------------------------h-------
Confidence 222 222333455555543211 11123333443100 0
Q ss_pred cCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHH
Q 003165 252 PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSA 331 (843)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 331 (843)
+.++ .|...+..
T Consensus 180 ------------------------------------e~~~--------------------------------~~~~~i~e 191 (394)
T COG0050 180 ------------------------------------EGDA--------------------------------KWEAKIEE 191 (394)
T ss_pred ------------------------------------cCCc--------------------------------chHHHHHH
Confidence 0000 01111356
Q ss_pred HHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEE
Q 003165 332 LLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRI 411 (843)
Q Consensus 332 LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v 411 (843)
|||++.+|+|.|. .+.+.||.+-|-.++.-..+|. ++++||-.|+|+.|+.+-+
T Consensus 192 Lm~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~evei 245 (394)
T COG0050 192 LMDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEE
Confidence 8999999999993 1346789998888888778887 9999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
.|-. ...+ ..++.+- .-++..++..|||-+++ +|.+.--+.-| .|+.+.
T Consensus 246 vG~~--~~~k-----ttvtgve----mfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpg 297 (394)
T COG0050 246 VGIK--ETQK-----TTVTGVE----MFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPG 297 (394)
T ss_pred eccc--ccce-----eEEEhHH----HHHHHHhccccCCCcceEEEeccccceecceEeecCC
Confidence 7633 1111 2222221 12345788899998765 45443222334 555443
No 44
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-30 Score=268.59 Aligned_cols=287 Identities=23% Similarity=0.335 Sum_probs=200.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+..-||+-+||+|||||||+.++............-+..-.|..|+|+.|||||++..+.+...
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa--------------- 115 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA--------------- 115 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc---------------
Confidence 34578999999999999999999854322111111112345789999999999999875544432
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccccccccCCHHHH
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~~~~~~~~~~~~ 174 (843)
..++--+|||||.||++.|+.+..+.|||||||.|++|.++||++|+-.|.+-+++.| +|+||.|.. + |+ +.
T Consensus 116 -~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V----~-d~-e~ 188 (449)
T KOG0460|consen 116 -KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV----D-DP-EM 188 (449)
T ss_pred -ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc----C-CH-HH
Confidence 5678889999999999999999999999999999999999999999999999999855 699999976 2 32 22
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCC
Q 003165 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (843)
.+.++ -+++.+|..|..+ -...+|..||++- + |-|
T Consensus 189 leLVE---mE~RElLse~gf~--------Gd~~PvI~GSAL~-------------------------A-Leg-------- 223 (449)
T KOG0460|consen 189 LELVE---MEIRELLSEFGFD--------GDNTPVIRGSALC-------------------------A-LEG-------- 223 (449)
T ss_pred HHHHH---HHHHHHHHHcCCC--------CCCCCeeecchhh-------------------------h-hcC--------
Confidence 22211 2344455443222 1122445555420 0 000
Q ss_pred CceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHH
Q 003165 255 KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLE 334 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (843)
.+++. | . +.+..|||
T Consensus 224 ----------------------------------~~pei--------g----~-------------------~aI~kLld 238 (449)
T KOG0460|consen 224 ----------------------------------RQPEI--------G----L-------------------EAIEKLLD 238 (449)
T ss_pred ----------------------------------CCccc--------c----H-------------------HHHHHHHH
Confidence 00000 0 0 01246899
Q ss_pred HHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCC
Q 003165 335 MMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGP 414 (843)
Q Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~ 414 (843)
++.+|+|.|. .+-+.||+.-|-.++.-+.+|. ++.+|+-.|+|++|+++-++|.
T Consensus 239 avDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460|consen 239 AVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred HHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEecc
Confidence 9999999993 1245788888888888888888 9999999999999999999876
Q ss_pred CCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
|.+. ..+|+.|-. -...+++|.|||-|++ +|++..-++-| .++.++
T Consensus 293 ~~~l-------kttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pG 341 (449)
T KOG0460|consen 293 NKTL-------KTTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPG 341 (449)
T ss_pred Ccce-------eeEeehHHH----HHHHHHhcccccceehhhhcCCHHHHhcccEEecCC
Confidence 5221 134444432 2456899999999876 57776545666 666655
No 45
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=4.2e-29 Score=283.11 Aligned_cols=289 Identities=22% Similarity=0.333 Sum_probs=198.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..+...||+++||+|||||||+++|........+........+|..++|++||+|++++...+.++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------------- 122 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-------------- 122 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------------
Confidence 345688999999999999999999964321111100111226899999999999999887766554
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEECCccccccccCCHHH
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviNKiD~~~~~~~~~~~~ 173 (843)
++.++|||||||.+|..++..++..+|++++|||+.+|+..||++++..+...++|. |+++||||+. . .++
T Consensus 123 --~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~~~ 194 (447)
T PLN03127 123 --KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--DEE 194 (447)
T ss_pred --CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--HHH
Confidence 678999999999999999999999999999999999999999999999999999995 6799999976 3 223
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
..+.+. ++++.++..+..+. ..+ ++...|+..++. |+
T Consensus 195 ~~~~i~---~~i~~~l~~~~~~~-~~v-------piip~Sa~sa~~--------------------------g~------ 231 (447)
T PLN03127 195 LLELVE---MELRELLSFYKFPG-DEI-------PIIRGSALSALQ--------------------------GT------ 231 (447)
T ss_pred HHHHHH---HHHHHHHHHhCCCC-Ccc-------eEEEeccceeec--------------------------CC------
Confidence 332222 23333332211100 001 111123211110 00
Q ss_pred CCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHH
Q 003165 254 TKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALL 333 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (843)
+ .....+ ....|+
T Consensus 232 n------------------------------------------------~~~~~~-------------------~i~~Ll 244 (447)
T PLN03127 232 N------------------------------------------------DEIGKN-------------------AILKLM 244 (447)
T ss_pred C------------------------------------------------cccccc-------------------hHHHHH
Confidence 0 000000 014578
Q ss_pred HHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcC
Q 003165 334 EMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMG 413 (843)
Q Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~ 413 (843)
+++.+++|.|.. +.++||.+.|..++..++.|. +..+||.+|+++.||.|++++
T Consensus 245 ~~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i~p 298 (447)
T PLN03127 245 DAVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEIVG 298 (447)
T ss_pred HHHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEEcc
Confidence 888888988721 135789888888888788786 899999999999999999876
Q ss_pred CCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecC
Q 003165 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNE 470 (843)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~ 470 (843)
++.. + ....+|..|... ..++++|.|||.+++ .|++....+.| .||+.
T Consensus 299 ~~~~-g----~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 299 LRPG-G----PLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred cCCC-C----cEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 4311 0 113688888754 356899999999887 46654334566 77764
No 46
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.97 E-value=1.4e-29 Score=262.01 Aligned_cols=197 Identities=42% Similarity=0.714 Sum_probs=173.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCccc---ccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
|||+|+||+|+|||||+++|++.++.+.+ ...+..+++|..++|++||+|+......+.|.. .+++
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~~~ 69 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SKGK 69 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CCCC
Confidence 79999999999999999999999988763 234456789999999999999999988887751 1234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
.+.+++||||||.+|...+..+++.+|++++|+|+.+|...+++.+++.+...++|.++++||+|+...+...++++.+.
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 68999999999999999999999999999999999999988998888888778899999999999987777777888899
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHh
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
++.++++++|..+..+..++ .+.|.|..+||.++|+..||+|++++|+++|
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 99999999999987654432 3678999999999999999999999999988
No 47
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.96 E-value=1.9e-28 Score=276.41 Aligned_cols=145 Identities=29% Similarity=0.340 Sum_probs=123.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-------eEeecCcccccccCeeEeeeeEEEEEeecc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISLYYEMTD 83 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~ 83 (843)
||+|+||+|||||||+++|++.+|.+.+.. .|+ .+++|+.++|++||+|++.....+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999987632 343 368999999999999999998888775
Q ss_pred cccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCcc
Q 003165 84 DALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~ 162 (843)
+++++|||||||.+|..++..++..+|+|++|||+.+|+.+||++++..+...++| +++|+||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999999888886 5679999998
Q ss_pred ccccccCCHHHHHHHHHHHHHHhhhhh
Q 003165 163 CFLELQVDGEEAYQTFSRVVENANVIM 189 (843)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (843)
. +++. + .+.++.+++..++
T Consensus 146 ~----~~~~-~---~~~~i~~~~~~~~ 164 (406)
T TIGR02034 146 V----DYDE-E---VFENIKKDYLAFA 164 (406)
T ss_pred c----cchH-H---HHHHHHHHHHHHH
Confidence 7 6542 2 3444444444444
No 48
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=3.5e-28 Score=277.12 Aligned_cols=286 Identities=26% Similarity=0.394 Sum_probs=201.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEEEee
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
+...||+++||+|||||||+++|++..|.+++.. .|. .+++|+.++|++||+|++.....+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 4568999999999999999999999999986531 232 358999999999999999998887775
Q ss_pred cccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC--cccccHHHHHHHHHcCCCc-eEEEEE
Q 003165 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PVLTVN 158 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~--gv~~qt~~~l~~~~~~~~p-~ilviN 158 (843)
++.++|||||||.+|...+..+++.+|++++|||+.+ |+..|++.++..+...+++ +++++|
T Consensus 83 ---------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviN 147 (425)
T PRK12317 83 ---------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147 (425)
T ss_pred ---------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEE
Confidence 7899999999999999999999999999999999999 9999999999888888875 678999
Q ss_pred CCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChH
Q 003165 159 KMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDES 238 (843)
Q Consensus 159 KiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~ 238 (843)
|+|+. +.+.+ ++..+.++++.++..+.. .+....+...|+.+|.+. +..
T Consensus 148 K~Dl~----~~~~~----~~~~~~~~i~~~l~~~g~--------~~~~~~ii~iSA~~g~gi---------------~~~ 196 (425)
T PRK12317 148 KMDAV----NYDEK----RYEEVKEEVSKLLKMVGY--------KPDDIPFIPVSAFEGDNV---------------VKK 196 (425)
T ss_pred ccccc----cccHH----HHHHHHHHHHHHHHhhCC--------CcCcceEEEeecccCCCc---------------ccc
Confidence 99987 54422 233344444444432211 010112333444443211 000
Q ss_pred HHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHH
Q 003165 239 KMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (843)
Q Consensus 239 ~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
. ...-| |+
T Consensus 197 ~-~~~~w----y~------------------------------------------------------------------- 204 (425)
T PRK12317 197 S-ENMPW----YN------------------------------------------------------------------- 204 (425)
T ss_pred c-cCCCc----cc-------------------------------------------------------------------
Confidence 0 00001 00
Q ss_pred HHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
-..|++++. .+|.|.. +.+.|+.+.|..++..+..|. +..+||
T Consensus 205 ----------g~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~G~v 247 (425)
T PRK12317 205 ----------GPTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPVGRV 247 (425)
T ss_pred ----------HHHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEEEEE
Confidence 023455543 3565510 135789999999888777776 889999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
.+|+|+.||.|+++..+ . ..+|..|.. ...++++|.|||.|++ .|++......| .|++..
T Consensus 248 ~~G~v~~Gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 248 ETGVLKVGDKVVFMPAG-----V----VGEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred eeccEecCCEEEECCCC-----C----eEEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 99999999999986422 1 268888874 3467999999999877 35543223456 666543
No 49
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=3.5e-27 Score=274.55 Aligned_cols=304 Identities=21% Similarity=0.288 Sum_probs=209.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+.++|+++||+|||||||+++|.... + .....+|+|+......+.|. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v--------------~~~e~~GIT~~ig~~~v~~~---------------~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--V--------------AQGEAGGITQHIGAYHVENE---------------DG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--c--------------ccccCCceeecceEEEEEEC---------------CC
Confidence 45789999999999999999994321 1 11223578888777666664 13
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
..++|||||||.+|...+.++++.+|++|+|+|+++|+.+||.++++++...++|+++++||+|+. +.+++++.+.
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~v~~~ 210 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDRVKQE 210 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999988999999999999998 7765544333
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003165 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+++ .+.....+.. .. .+...|+.+|.
T Consensus 211 L~~----~g~~~~~~~~----~~-------~~v~iSAktGe--------------------------------------- 236 (587)
T TIGR00487 211 LSE----YGLVPEDWGG----DT-------IFVPVSALTGD--------------------------------------- 236 (587)
T ss_pred HHH----hhhhHHhcCC----Cc-------eEEEEECCCCC---------------------------------------
Confidence 221 1111100000 00 01111221111
Q ss_pred eecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHHH
Q 003165 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMI 337 (843)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (843)
.+. .|++.+.
T Consensus 237 -----------------------------------GI~-----------------------------------eLl~~I~ 246 (587)
T TIGR00487 237 -----------------------------------GID-----------------------------------ELLDMIL 246 (587)
T ss_pred -----------------------------------ChH-----------------------------------HHHHhhh
Confidence 000 0111111
Q ss_pred h--cCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCC
Q 003165 338 F--HLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 415 (843)
Q Consensus 338 ~--~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n 415 (843)
. .++.+ ..++++|+.++|+++..+++.|. ++++||++|+|+.||.|.+.. .
T Consensus 247 ~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~~-~ 299 (587)
T TIGR00487 247 LQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVGA-A 299 (587)
T ss_pred hhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEECC-C
Confidence 0 00000 12356899999999999988887 999999999999999997531 1
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCC---------------------
Q 003165 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV--------------------- 473 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~--------------------- 473 (843)
..+|..++... ...+++|.||++|.|.|+++. ..+| +|+-....
T Consensus 300 ----------~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~ 365 (587)
T TIGR00487 300 ----------YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR 365 (587)
T ss_pred ----------ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 03666665544 456899999999999999874 2456 66522100
Q ss_pred -Cccccccccc----CCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEE
Q 003165 474 -DAHPIRAMKF----SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCT 521 (843)
Q Consensus 474 -~~~~~~~~~~----~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~ 521 (843)
....+..+.. ...|.+.+.|++...+..+.|.++|.++..++|++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~ 418 (587)
T TIGR00487 366 SVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVI 418 (587)
T ss_pred ccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEE
Confidence 0011122111 12488999999999999999999999999999999874
No 50
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=2.4e-27 Score=271.33 Aligned_cols=132 Identities=28% Similarity=0.331 Sum_probs=117.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-------eEeecCcccccccCeeEeeeeEEEE
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRADEAERGITIKSTGISLY 78 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (843)
.....||+|+||+|||||||+++||+.+|.+.+.. .|+ .+++|+.++|++||+|++.+...+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45678999999999999999999999999987632 343 2589999999999999999877776
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEE
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTV 157 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilvi 157 (843)
++ ++.++|||||||.+|..++..+++.+|+|++|||+.+|+..||++++..+...+++ +|+++
T Consensus 104 ~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvv 167 (474)
T PRK05124 104 TE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAV 167 (474)
T ss_pred cC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEE
Confidence 65 77999999999999999999999999999999999999999999999888888865 66799
Q ss_pred ECCccc
Q 003165 158 NKMDRC 163 (843)
Q Consensus 158 NKiD~~ 163 (843)
||||+.
T Consensus 168 NKiD~~ 173 (474)
T PRK05124 168 NKMDLV 173 (474)
T ss_pred Eeeccc
Confidence 999987
No 51
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=2e-27 Score=270.92 Aligned_cols=289 Identities=24% Similarity=0.346 Sum_probs=201.4
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEE
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (843)
......+||+++||+|||||||+++|++..|.+++. ..|. .+++|..++|++||+|++.+...+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 445678999999999999999999999999987642 1222 3579999999999999999988777
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc---ccccHHHHHHHHHcCCCc-eE
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-PV 154 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g---v~~qt~~~l~~~~~~~~p-~i 154 (843)
+. ++.++|||||||.+|...+..+++.+|++++|+|+++| ...|+..++..+...+.+ ++
T Consensus 82 ~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 82 TD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI 145 (426)
T ss_pred cC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE
Confidence 65 78999999999999999999999999999999999999 888998887777666664 66
Q ss_pred EEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccC
Q 003165 155 LTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG 234 (843)
Q Consensus 155 lviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 234 (843)
+++||+|+. +++.+. +..+.++++.++..+... +....+...|+.+|+...
T Consensus 146 VviNK~Dl~----~~~~~~----~~~~~~ei~~~~~~~g~~--------~~~~~~i~iSA~~g~ni~------------- 196 (426)
T TIGR00483 146 VAINKMDSV----NYDEEE----FEAIKKEVSNLIKKVGYN--------PDTVPFIPISAWNGDNVI------------- 196 (426)
T ss_pred EEEEChhcc----CccHHH----HHHHHHHHHHHHHHcCCC--------cccceEEEeecccccccc-------------
Confidence 799999987 665432 333334444444322110 101122334454443210
Q ss_pred CChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhh
Q 003165 235 VDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMG 314 (843)
Q Consensus 235 i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~ 314 (843)
... . . .| | |. +
T Consensus 197 --~~~-----------------------------~---~---~~-w--~~----g------------------------- 207 (426)
T TIGR00483 197 --KKS-----------------------------E---N---TP-W--YK----G------------------------- 207 (426)
T ss_pred --ccc-----------------------------c---C---Cc-c--cc----c-------------------------
Confidence 000 0 0 01 1 00 0
Q ss_pred HHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCccee
Q 003165 315 KALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFA 394 (843)
Q Consensus 315 ~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~ 394 (843)
..|++++.+ +|.|. .+.++||.++|..++..++.|. ++
T Consensus 208 ---------------~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~g~G~-vv 245 (426)
T TIGR00483 208 ---------------KTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVYSITGVGT-VP 245 (426)
T ss_pred ---------------hHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEEecCCCeE-EE
Confidence 235555533 45441 0135789999999988888776 89
Q ss_pred eeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE--eccccccccce-eeecCC
Q 003165 395 FGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 395 ~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
.+||.+|+|+.||.|.+...+ . ..+|..|.. ...++++|.|||.+++ .|++....+.| .|++..
T Consensus 246 ~G~v~~G~i~~gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~ 312 (426)
T TIGR00483 246 VGRVETGVLKPGDKVVFEPAG-----V----SGEVKSIEM----HHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPD 312 (426)
T ss_pred EEEEccceeecCCEEEECCCC-----c----EEEEEEEEE----CCcccCEEcCCCEEEEEECCCChhhcccceEEecCC
Confidence 999999999999999986321 1 268888874 3467899999999987 45433223456 666543
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=1.9e-26 Score=271.35 Aligned_cols=319 Identities=19% Similarity=0.261 Sum_probs=211.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+.++|+|+||+|||||||+++|....... +..+|+|.......+.|.. ++.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~~~ 293 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------KDE 293 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------cCC
Confidence 467899999999999999999996543321 2235788776665555541 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
++.++|||||||.+|...+.++++.+|++|||||+.+|+++||.++|..+...++|+|+++||+|+. +.+.+++.+
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~v~~ 369 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTERIKQ 369 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999988999999999999998 655433322
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+. ..+.+...+. +. ..+...|+..|.+
T Consensus 370 eL~----~~~ll~e~~g----~~-------vpvv~VSAktG~G------------------------------------- 397 (742)
T CHL00189 370 QLA----KYNLIPEKWG----GD-------TPMIPISASQGTN------------------------------------- 397 (742)
T ss_pred HHH----HhccchHhhC----CC-------ceEEEEECCCCCC-------------------------------------
Confidence 221 1111100000 00 0111122221110
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
+ ..|++++
T Consensus 398 -------------------------------------I-----------------------------------deLle~I 405 (742)
T CHL00189 398 -------------------------------------I-----------------------------------DKLLETI 405 (742)
T ss_pred -------------------------------------H-----------------------------------HHHHHhh
Confidence 0 1111222
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
..+.+.+ . ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 406 ~~l~e~~----~-------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g---- 457 (742)
T CHL00189 406 LLLAEIE----D-------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIG---- 457 (742)
T ss_pred hhhhhhh----c-------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEEC----
Confidence 1111000 0 012456789999999999998887 99999999999999999852
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCC-Cc------------------c
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEV-DA------------------H 476 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~-~~------------------~ 476 (843)
.+.++++.+.+....++++|.||++|+|.||++. ..+| +|.-.... .. .
T Consensus 458 ----------~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~ 526 (742)
T CHL00189 458 ----------TSYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRI 526 (742)
T ss_pred ----------CcceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 1456788888888899999999999999999653 3667 55422110 00 0
Q ss_pred cccc----cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHH
Q 003165 477 PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHL 538 (843)
Q Consensus 477 ~~~~----~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHL 538 (843)
.+.. +...-.+.+.+-|.+...+-.+.+..+|.++..+. +.+ .++=+|.|.+.-
T Consensus 527 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~~~--v~i------~i~~~~vG~it~ 584 (742)
T CHL00189 527 TLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQKK--VQL------NILYASLGEVTE 584 (742)
T ss_pred chHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCCCc--EEE------EEEEeecCCCCH
Confidence 0000 01112466778888888888888888888774432 222 234566776643
No 53
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=9.4e-27 Score=263.19 Aligned_cols=134 Identities=24% Similarity=0.256 Sum_probs=105.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEE-eecc---c----ccc-
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY-EMTD---D----ALK- 87 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~-~~~~---~----~~~- 87 (843)
+...||+++||+|||||||+.+| .| ..+|.+++|++||||++.+...+.+ .++. . ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 45679999999999999999999 34 2468889999999999988776642 1100 0 000
Q ss_pred ----cccCcCC----CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-ccccHHHHHHHHHcCCCc-eEEEE
Q 003165 88 ----SYKGERN----GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTV 157 (843)
Q Consensus 88 ----~~~~~~~----~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l~~~~~~~~p-~ilvi 157 (843)
...+... .-...++|||||||.+|..++..++..+|+|+|||||.+| +++||++++..+...+++ +|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 0000000 1135799999999999999999999999999999999996 799999999988888886 56799
Q ss_pred ECCccc
Q 003165 158 NKMDRC 163 (843)
Q Consensus 158 NKiD~~ 163 (843)
||||+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999976
No 54
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-25 Score=248.52 Aligned_cols=287 Identities=24% Similarity=0.335 Sum_probs=206.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
++...|.+++||+|+|||||.++|||..|.+..+ ..|+ .|++|...+||+||+|++.....|.-
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes- 252 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES- 252 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-
Confidence 4467899999999999999999999999988653 2332 68999999999999999998877764
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHcCCCc-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~~~~p- 152 (843)
+.+.++|+|+|||.||..+|+.+...+|.|||||||+-| ...||++|...+...|+.
T Consensus 253 ---------------~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~q 317 (603)
T KOG0458|consen 253 ---------------KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQ 317 (603)
T ss_pred ---------------CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcce
Confidence 388999999999999999999999999999999999964 368999999999899985
Q ss_pred eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhh-hccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhh
Q 003165 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
.+|+|||||.. +|+ ..+|.+|...++.+|. +.+-.. ..+.|-|..| +.|-..+-
T Consensus 318 livaiNKmD~V----~Ws----q~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPiSG-------l~GeNL~k--------- 372 (603)
T KOG0458|consen 318 LIVAINKMDLV----SWS----QDRFEEIKNKLSSFLKESCGFKE-SSVKFIPISG-------LSGENLIK--------- 372 (603)
T ss_pred EEEEeeccccc----Ccc----HHHHHHHHHHHHHHHHHhcCccc-CCcceEeccc-------ccCCcccc---------
Confidence 67899999999 998 5678888888888883 322111 1234445333 32210000
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHh
Q 003165 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (843)
+. ++..+.++.++
T Consensus 373 ---~~-----------------------------------------------------~~~~l~~WY~G----------- 385 (603)
T KOG0458|consen 373 ---IE-----------------------------------------------------QENELSQWYKG----------- 385 (603)
T ss_pred ---cc-----------------------------------------------------cchhhhhhhcC-----------
Confidence 00 00001111111
Q ss_pred hhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCc
Q 003165 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 391 (843)
..||+.|-. +-.|.. +-+.||++-|..++..+..+
T Consensus 386 ------------------p~LL~~id~-~~~p~~-------------------------~~~kPl~ltIsdi~~~~~~~- 420 (603)
T KOG0458|consen 386 ------------------PTLLSQIDS-FKIPER-------------------------PIDKPLRLTISDIYPLPSSG- 420 (603)
T ss_pred ------------------ChHHHHHhh-ccCCCC-------------------------cccCCeEEEhhheeecCCCe-
Confidence 235555544 323310 12359999999999887766
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eee
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~ 468 (843)
+..++||-||.+++||.||++.+. . ...|..|- ..-.+...|.|||-+.+. |+....++.| +++
T Consensus 421 ~~i~gkiesG~iq~gqkl~i~~s~-----e----~~~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 421 VSISGKIESGYIQPGQKLYIMTSR-----E----DATVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred eEEEEEEeccccccCCEEEEecCc-----c----eEEEEeee----cCCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 589999999999999999996421 1 15666655 236678889999998764 5444444566 555
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=3.9e-27 Score=238.92 Aligned_cols=170 Identities=35% Similarity=0.469 Sum_probs=136.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccC--CceEeecCcccccccCeeEeeeeEEEE--EeecccccccccCc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRADEAERGITIKSTGISLY--YEMTDDALKSYKGE 92 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~d~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~~~ 92 (843)
+++|||+++||+|||||||+++|++..+.+.+... +..+.+|..++|++||+|+..+...+. +.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~------------ 68 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN------------ 68 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc------------
Confidence 46899999999999999999999999988765211 113468999999999999999988887 54
Q ss_pred CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHH
Q 003165 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (843)
.+.++|||||||.+|..++.++++.+|+||+|||+.+|++.||+++++.+...++|+++|+||||+. ..
T Consensus 69 ----~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~--- 137 (188)
T PF00009_consen 69 ----NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EK--- 137 (188)
T ss_dssp ----SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HH---
T ss_pred ----ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hh---
Confidence 8999999999999999999999999999999999999999999999999999999999999999987 33
Q ss_pred HHHHHHHHHHHHhh-hhhhhccCCCCCCeeeeeecceeecccCccceee
Q 003165 173 EAYQTFSRVVENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 220 (843)
Q Consensus 173 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 220 (843)
++++.++++. .++..+.... . ...++.+.|+..||++
T Consensus 138 ----~~~~~~~~~~~~l~~~~~~~~--~-----~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 138 ----ELEEIIEEIKEKLLKEYGENG--E-----EIVPVIPISALTGDGI 175 (188)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSTT--T-----STEEEEEEBTTTTBTH
T ss_pred ----hHHHHHHHHHHHhccccccCc--c-----ccceEEEEecCCCCCH
Confidence 3344444444 2222221110 0 1126778899999964
No 56
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=3.7e-25 Score=263.57 Aligned_cols=130 Identities=31% Similarity=0.360 Sum_probs=115.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-------eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
...||+|+||+|||||||+++|++..|.+... ..|+ .+++|..++|++||+|++.+...+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 34579999999999999999999999988742 2443 368999999999999999998877775
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEEC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNK 159 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNK 159 (843)
+..++|||||||.+|...+..++..+|++++|||+.+|+.+||++++..+...+++ +|+++||
T Consensus 103 ----------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK 166 (632)
T PRK05506 103 ----------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNK 166 (632)
T ss_pred ----------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEe
Confidence 78899999999999999999999999999999999999999999999988888865 5679999
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
||+.
T Consensus 167 ~D~~ 170 (632)
T PRK05506 167 MDLV 170 (632)
T ss_pred cccc
Confidence 9987
No 57
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.93 E-value=9e-25 Score=256.46 Aligned_cols=115 Identities=32% Similarity=0.421 Sum_probs=101.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++||+|||||||+++| .| ..+|..++|++||+|++.....+... ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEE
Confidence 4899999999999999999 33 23688899999999998876655432 25679
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviNKiD~~ 163 (843)
+|||||||.+|...+..++..+|++++|||+.+|+.+||++++..+...++|. ++|+||+|+.
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 99999999999999999999999999999999999999999999888888885 6899999976
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.93 E-value=1.7e-25 Score=227.10 Aligned_cols=166 Identities=26% Similarity=0.339 Sum_probs=127.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||+++||+|||||||+++|++......+........+|+.++|++||+|+++....+.++ ++.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------CeE
Confidence 5899999999999999999998754322111111347999999999999999987776664 789
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccccCCHHHHHHHH
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~~~~~ 178 (843)
++|+|||||.+|..++.++++.+|+|++|||+.+|+..||+++|+.+...++| +|+|+||||+. . + ++. +
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~-~-~~~---~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----D-D-EEL---L 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----C-c-HHH---H
Confidence 99999999999999999999999999999999999999999999999999998 56899999986 3 2 222 2
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccce
Q 003165 179 SRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW 218 (843)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~ 218 (843)
+.+.+++...+..+.. .+...++.+.|+++|+
T Consensus 138 ~~~~~~i~~~l~~~g~--------~~~~v~iipiSa~~g~ 169 (195)
T cd01884 138 ELVEMEVRELLSKYGF--------DGDNTPIVRGSALKAL 169 (195)
T ss_pred HHHHHHHHHHHHHhcc--------cccCCeEEEeeCcccc
Confidence 3333444444443211 1222356667887776
No 59
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=4e-24 Score=241.33 Aligned_cols=136 Identities=29% Similarity=0.370 Sum_probs=106.1
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccc-ccc-cccCc
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-ALK-SYKGE 92 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~-~~~~~ 92 (843)
+.+...||+++||+|||||||+++| .| .++|..++|++||+|+..+...+.|..... ... .+...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 3456689999999999999999999 33 358999999999999998766555531000 000 00000
Q ss_pred --------CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCCc-eEEEEECCcc
Q 003165 93 --------RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 93 --------~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~p-~ilviNKiD~ 162 (843)
.....+.++|+|||||.+|..++..++..+|++++|+|+.+|. ..++..++..+...+++ +++++||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 0011468999999999999999999999999999999999998 89999999888777774 7789999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 6
No 60
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.92 E-value=2e-23 Score=235.85 Aligned_cols=133 Identities=29% Similarity=0.353 Sum_probs=104.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-----ccc-ccccC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-----DAL-KSYKG 91 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-----~~~-~~~~~ 91 (843)
...||+++||+|||||||+++| .+ ..+|..++|++||+|++.+...+.+.... +.+ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4569999999999999999999 23 24789999999999999887665542100 000 00000
Q ss_pred c----CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 92 E----RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 92 ~----~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
. .......++|||||||.+|..++..+++.+|++++|||+++|. ..||++++..+...+++ +++++||+|+.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 0 0012568999999999999999999999999999999999998 89999999888777765 67899999986
No 61
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.4e-23 Score=210.56 Aligned_cols=331 Identities=23% Similarity=0.298 Sum_probs=215.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEE-Eeeccccc-----ccc-
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY-YEMTDDAL-----KSY- 89 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~-~~~~~~~~-----~~~- 89 (843)
+..-||+.+||+|||||||+.+| .| -.+|.+.+|.+|||||+..+.... |.|.+-.. ...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 45679999999999999999999 66 468899999999999998776544 33332111 111
Q ss_pred c--CcCC-CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-ccccHHHHHHHHHcCCCc-eEEEEECCcccc
Q 003165 90 K--GERN-GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMDRCF 164 (843)
Q Consensus 90 ~--~~~~-~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l~~~~~~~~p-~ilviNKiD~~~ 164 (843)
+ |..+ .--.++.|+|+|||+-+...|.++....|+|+|||+|.+. .++||++|+..+.-.+++ +|++-||+|+.
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV- 153 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV- 153 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee-
Confidence 1 1111 2246899999999999999999999999999999999985 689999999888888886 55799999977
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHh
Q 003165 165 LELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERL 244 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (843)
+.+++.+.++++.+.+.-... + |-|
T Consensus 154 -----~~E~AlE~y~qIk~FvkGt~A---e-------------~aP---------------------------------- 178 (415)
T COG5257 154 -----SRERALENYEQIKEFVKGTVA---E-------------NAP---------------------------------- 178 (415)
T ss_pred -----cHHHHHHHHHHHHHHhccccc---C-------------CCc----------------------------------
Confidence 456666666665543221110 0 000
Q ss_pred hcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhh
Q 003165 245 WGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQT 324 (843)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~ 324 (843)
+ -|+.+... .|
T Consensus 179 ------------I-------------------IPiSA~~~----------------~N---------------------- 189 (415)
T COG5257 179 ------------I-------------------IPISAQHK----------------AN---------------------- 189 (415)
T ss_pred ------------e-------------------eeehhhhc----------------cC----------------------
Confidence 0 01110000 01
Q ss_pred hccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCC--------Ccceeee
Q 003165 325 WLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDK--------GRFFAFG 396 (843)
Q Consensus 325 ~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~--------g~~l~~~ 396 (843)
+..|+++|.+|+|.|. .|.+.|..+||...+..... |+ +.=+
T Consensus 190 ----IDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG-ViGG 239 (415)
T COG5257 190 ----IDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGG-VIGG 239 (415)
T ss_pred ----HHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCc-eecc
Confidence 2568999999999992 24567788888888754332 33 5556
Q ss_pred eeEeeEEecCCEEEEcCCCCCCCCccc----cceeeeceEEEEecCceeeeCcccCCCeEEE-eccccccccceeeecCC
Q 003165 397 RVFSGKVSTGLKVRIMGPNYVPGEKKD----LYVKSVQRTVIWMGKKQETVEDVPCGNTVAM-VGLDQFITKNATLTNEK 471 (843)
Q Consensus 397 RV~SGtL~~g~~v~v~~~n~~~~~~~~----~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i-~gl~~~~~~tgTl~~~~ 471 (843)
-+..|.|+.||++-+- |.....+..+ ....+|.+|+ .....+++|.+|-.++| ++|+.++++.+-|...-
T Consensus 240 sl~~G~l~vGDEIEIr-PGi~v~k~~k~~~~pi~T~i~Sl~----ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V 314 (415)
T COG5257 240 SLVQGVLRVGDEIEIR-PGIVVEKGGKTVWEPITTEIVSLQ----AGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQV 314 (415)
T ss_pred eeeeeeEecCCeEEec-CCeEeecCCceEEEEeeEEEEEEE----eCCeeeeeccCCceEEEecccCcchhhhhhhcccc
Confidence 7889999999999863 2211111110 1123444444 24567999999998888 47887766655443321
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchh
Q 003165 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGEL 536 (843)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GEl 536 (843)
.- .+=..| +...++.+|-. -|.++.-.+-.++|+.-.++|.++...|--
T Consensus 315 ----~G-~pG~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGta 363 (415)
T COG5257 315 ----VG-KPGTLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGTA 363 (415)
T ss_pred ----cc-CCCCCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeecc
Confidence 00 011112 33445555532 244555555566666457888888877753
No 62
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=7e-23 Score=240.00 Aligned_cols=114 Identities=36% Similarity=0.448 Sum_probs=103.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++||+|||||||+++| .|. .+|..++|+++|+|++.....+.++ +..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aL-----------tg~--~~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL-----------TGI--AADRLPEEKKRGMTIDLGFAYFPLP----------------DYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hCc--cCcCChhHhcCCceEEeEEEEEEeC----------------CEEE
Confidence 7999999999999999999 331 2577889999999999887776664 5899
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
+|||||||.+|...+..++..+|++++|||+++|+.+||.+++..+...++| +++++||+|+.
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999888888999 88999999986
No 63
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=1.3e-23 Score=216.54 Aligned_cols=127 Identities=28% Similarity=0.299 Sum_probs=112.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccC---------------CceEeecCcccccccCeeEeeeeEEEEEeecccc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA---------------GDVRMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~---------------g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
||+|+||+|||||||+++|++.+|.+..... ...+++|+.++|++||+|++.....+.|.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 6899999999999999999999999873211 11468999999999999999998887775
Q ss_pred cccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
+..++|+|||||.+|..++..+++.+|++|+|+|+++|...+++.++..+...+.| +|+|+||+|+.
T Consensus 76 -----------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 76 -----------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred -----------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 78999999999999999999999999999999999999999999888888777766 46689999987
No 64
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.3e-23 Score=213.42 Aligned_cols=151 Identities=28% Similarity=0.335 Sum_probs=127.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc-------------cCCc----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-------------~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
...++..+|++|.|||||+.+|||.+..+-.. ..|+ ...+|-+..|||.||||+.++..|..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45678999999999999999999988766331 0111 236789999999999999988776654
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEEC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNK 159 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNK 159 (843)
..++.+.|||||+.|...|.++.+-||.||++|||..|+..||++|...+.-.+++.+ +++||
T Consensus 85 ----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNK 148 (431)
T COG2895 85 ----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNK 148 (431)
T ss_pred ----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEee
Confidence 7899999999999999999999999999999999999999999999888888999755 69999
Q ss_pred CccccccccCCHHHHHHHHHHHHHHhhhhhhhc
Q 003165 160 MDRCFLELQVDGEEAYQTFSRVVENANVIMATY 192 (843)
Q Consensus 160 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (843)
||+. +++ .+++++|.++...+..+.
T Consensus 149 mDLv----dy~----e~~F~~I~~dy~~fa~~L 173 (431)
T COG2895 149 MDLV----DYS----EEVFEAIVADYLAFAAQL 173 (431)
T ss_pred eccc----ccC----HHHHHHHHHHHHHHHHHc
Confidence 9999 887 446777777777766543
No 65
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=221.56 Aligned_cols=126 Identities=29% Similarity=0.430 Sum_probs=109.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..-|.|+||+|||||||+++|-...-+.. ..| |||.......+.++ ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~G--------------GITQhIGAF~V~~p---------------~G 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAG--------------GITQHIGAFTVTLP---------------SG 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh--hcC--------------CccceeceEEEecC---------------CC
Confidence 456799999999999999999943322222 244 79998888777765 47
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
..|+|+|||||.-|.....++...+|.+||||.|.+|+.+||.+.+.+|...++|+|+++||+|++ +++|+.+++.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv~~e 276 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKVKRE 276 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9998877654
Q ss_pred H
Q 003165 178 F 178 (843)
Q Consensus 178 ~ 178 (843)
+
T Consensus 277 L 277 (683)
T KOG1145|consen 277 L 277 (683)
T ss_pred H
Confidence 3
No 66
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.90 E-value=2.7e-23 Score=215.75 Aligned_cols=127 Identities=34% Similarity=0.426 Sum_probs=112.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCce-----EeecCcccccccCeeEeeeeEEEEEeecccc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRADEAERGITIKSTGISLYYEMTDDA 85 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-----~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
||+++||+|||||||+++|++.+|.+.+.. .|.. +++|+.++|++||+|+++....+.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 799999999999999999999999887532 2321 48999999999999999999988886
Q ss_pred cccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC-------cccccHHHHHHHHHcCCC-ceEEEE
Q 003165 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPVLTV 157 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-------gv~~qt~~~l~~~~~~~~-p~ilvi 157 (843)
++++++||||||.+|..++..+++.+|++|+|||+.+ ++..|+..++..+...+. |+++|+
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 8899999999999999999999999999999999998 577899998888877775 566799
Q ss_pred ECCccc
Q 003165 158 NKMDRC 163 (843)
Q Consensus 158 NKiD~~ 163 (843)
||||+.
T Consensus 145 NK~Dl~ 150 (219)
T cd01883 145 NKMDDV 150 (219)
T ss_pred Eccccc
Confidence 999987
No 67
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.9e-21 Score=215.27 Aligned_cols=129 Identities=29% Similarity=0.401 Sum_probs=108.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..-|+|+||+|||||||++.+-. ..+....+| |||.......+.++. .+.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~--t~Va~~EaG--------------GITQhIGA~~v~~~~-------------~~~ 54 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRK--TNVAAGEAG--------------GITQHIGAYQVPLDV-------------IKI 54 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhc--CccccccCC--------------ceeeEeeeEEEEecc-------------CCC
Confidence 345699999999999999999933 222222244 799998888877740 024
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
..++|||||||+-|+....++...+|.||||||+.+|+++||.+.+.++...++|+++++||||++ +.+|+.....
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v~~e 130 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKVKQE 130 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999 8887766544
Q ss_pred HH
Q 003165 178 FS 179 (843)
Q Consensus 178 ~~ 179 (843)
++
T Consensus 131 l~ 132 (509)
T COG0532 131 LQ 132 (509)
T ss_pred HH
Confidence 43
No 68
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=3.8e-23 Score=178.12 Aligned_cols=80 Identities=55% Similarity=1.046 Sum_probs=76.3
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|||+||++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998877765558999999999999999999999999999999999999986
No 69
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.6e-21 Score=210.46 Aligned_cols=129 Identities=34% Similarity=0.439 Sum_probs=111.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+..||++||||||+.++ .| ..+|..++|++||+|++.+..++..+ ++.+
T Consensus 2 ii~t~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~ 52 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVM 52 (447)
T ss_pred eEEEeeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCce
Confidence 5899999999999999999 44 46899999999999999887666554 6699
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEECCccccccccCCHHHHHHHHH
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEEAYQTFS 179 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviNKiD~~~~~~~~~~~~~~~~~~ 179 (843)
.|||+|||+||...+..++...|+|+||||+.+|+++||.+++..+.-.+++. ++|+||+|+. |..++.+.++
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~------d~~r~e~~i~ 126 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV------DEARIEQKIK 126 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc------cHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 7899999966 4344444444
Q ss_pred HHHHH
Q 003165 180 RVVEN 184 (843)
Q Consensus 180 ~~~~~ 184 (843)
+++..
T Consensus 127 ~Il~~ 131 (447)
T COG3276 127 QILAD 131 (447)
T ss_pred HHHhh
Confidence 44443
No 70
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.86 E-value=7.4e-21 Score=199.20 Aligned_cols=299 Identities=22% Similarity=0.341 Sum_probs=205.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccc-cccc----cC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDA-LKSY----KG 91 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~-~~~~----~~ 91 (843)
...-+|++.||+|||||||+.+| .+|..+..+-+...++|..++|.+||.|-+.+..-+.|+..... ++.+ +.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34679999999999999999999 56666654333455899999999999999988888888753211 1111 11
Q ss_pred c--CCCCceEEEEEeCCCCcccHHHHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccc
Q 003165 92 E--RNGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 92 ~--~~~~~~~i~liDTPGh~df~~e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~ 167 (843)
. .+..+..+.|+||-||+.+...+++++ ...|..+|||.|.+|++..|++++..+....+|+|++++|+|+.
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~---- 268 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV---- 268 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC----
Confidence 1 234468899999999999999999999 56899999999999999999999999999999999999999976
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (843)
.- .+++.+++++..+++..+ .+|+.-.- .|...+....-
T Consensus 269 ~d------dr~~~v~~ei~~~Lk~v~--------------Rip~~vk~-------------------~~d~v~aa~a~-- 307 (527)
T COG5258 269 PD------DRFQGVVEEISALLKRVG--------------RIPLIVKD-------------------TDDVVLAAKAM-- 307 (527)
T ss_pred cH------HHHHHHHHHHHHHHHHhc--------------ccceeeec-------------------cchhHHhhhhh--
Confidence 22 356667777766665321 11211000 00000000000
Q ss_pred cccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhcc
Q 003165 248 NFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLP 327 (843)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P 327 (843)
+.++ . +-||+.. + ..+.+
T Consensus 308 -----k~~~---------~---------vvPi~~t--S------------------sVTg~------------------- 325 (527)
T COG5258 308 -----KAGR---------G---------VVPIFYT--S------------------SVTGE------------------- 325 (527)
T ss_pred -----hcCC---------c---------eEEEEEE--e------------------cccCc-------------------
Confidence 0000 0 0011100 0 00000
Q ss_pred chHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCC
Q 003165 328 ASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGL 407 (843)
Q Consensus 328 ~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~ 407 (843)
--.||+-+...||.-. ..+.++||.+||-|++.....|. ++.+-|-||+|+.||
T Consensus 326 -GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsGsV~~G~l~~gd 379 (527)
T COG5258 326 -GLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSGSVKSGILHVGD 379 (527)
T ss_pred -cHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEeeeEEeeeeccCC
Confidence 1235666666666531 12356899999999999998888 899999999999999
Q ss_pred EEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--cccc
Q 003165 408 KVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQ 459 (843)
Q Consensus 408 ~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~ 459 (843)
+|++ ||+. ..++.+.+|++|.. ....|++|.||+|+.++ |.+.
T Consensus 380 ~vll-GP~~----~G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~ 424 (527)
T COG5258 380 TVLL-GPFK----DGKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEK 424 (527)
T ss_pred EEEE-ccCC----CCcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCH
Confidence 9985 5542 23456688888874 67789999999997664 6554
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=4.3e-21 Score=195.63 Aligned_cols=144 Identities=40% Similarity=0.653 Sum_probs=120.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
++|||+++|+.|+|||||+++|++..+.+.....-..+.+|+.+.|..+|+|+......+.+. .
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~ 64 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------D 64 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------C
Confidence 479999999999999999999998777665532112356888899999999999888777775 7
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
+.+++||||||.+|...+..+++.+|++++|+|++++...+++.++..+...++|+++++||+|+. ....+...+.
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~ 140 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVDE 140 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999988888888888878899999999999987 5554444333
Q ss_pred HHHH
Q 003165 178 FSRV 181 (843)
Q Consensus 178 ~~~~ 181 (843)
+.+.
T Consensus 141 ~~~~ 144 (194)
T cd01891 141 VFDL 144 (194)
T ss_pred HHHH
Confidence 4333
No 72
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=4.6e-20 Score=215.73 Aligned_cols=130 Identities=28% Similarity=0.319 Sum_probs=88.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc--CCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RNG 95 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (843)
+...|+|+||+|||||||+++|...... ...+| |+|.......+.+............. ..-
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g--------------~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~ 68 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAG--------------GITQHIGATEVPIDVIEKIAGPLKKPLPIKL 68 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCC--------------ceEEeeceeeccccccccccceecccccccc
Confidence 3457999999999999999999543211 11122 23333222211111000000000000 000
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+...++|||||||.+|...+.++++.+|++++|+|+++|+.+||..++..+...++|+++++||+|+.
T Consensus 69 ~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 69 KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 01137999999999999999999999999999999999999999999998888899999999999985
No 73
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.2e-21 Score=201.84 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=126.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
+....|+.++||+++||||+-..+++.+|.++.+. .++ +|++|+..+|+++|-|+......|...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 45678999999999999999999999999886541 111 579999999999999999999888775
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-----c--cccHHHHHHHHHcCCCc-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----V--CVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-----v--~~qt~~~l~~~~~~~~p- 152 (843)
..+++++|+|||..|..+++.++.+||.++||++|..| . ..||+++...+...++.
T Consensus 156 ----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~ 219 (501)
T KOG0459|consen 156 ----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 219 (501)
T ss_pred ----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccce
Confidence 78999999999999999999999999999999999764 2 46999999999888886
Q ss_pred eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003165 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMA 190 (843)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (843)
.|+++||||-+.. +|+ .++++++.+.+..++.
T Consensus 220 lVv~vNKMddPtv--nWs----~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 220 LIVLINKMDDPTV--NWS----NERYEECKEKLQPFLR 251 (501)
T ss_pred EEEEEEeccCCcc--Ccc----hhhHHHHHHHHHHHHH
Confidence 5569999998733 444 2355555555555554
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.84 E-value=5e-20 Score=184.82 Aligned_cols=132 Identities=45% Similarity=0.697 Sum_probs=114.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|||+++||+|+|||||+++|++..|.+.+. .....++|+.+.|+++|+|.....+.+.|.. .+++++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEE
Confidence 799999999999999999999998877652 1224688999999999999998877776641 1235788
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++|||||||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++++||+|+.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999988888888877777889999999999986
No 75
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=6.7e-21 Score=168.11 Aligned_cols=85 Identities=38% Similarity=0.529 Sum_probs=79.2
Q ss_pred eeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEeccee
Q 003165 724 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (843)
Q Consensus 724 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 803 (843)
+||||||+++|++|++++|+|+++|++|||+|+++... +++++.|+|.+|+++++||.++||++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 68999999999999999999999999999999999887 33699999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003165 804 MMSSDP 809 (843)
Q Consensus 804 ~v~~~~ 809 (843)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999985
No 76
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=6e-21 Score=167.03 Aligned_cols=83 Identities=36% Similarity=0.558 Sum_probs=78.2
Q ss_pred eeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceee
Q 003165 725 LLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
||||||+++|.||++++|+|+++|++|||+|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 68999999999999999999999999999999888544 4789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003165 805 MSSDP 809 (843)
Q Consensus 805 v~~~~ 809 (843)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 77
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.5e-19 Score=185.06 Aligned_cols=129 Identities=26% Similarity=0.358 Sum_probs=108.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.|++|+||+|+|||||+.+|-. .|++...|..+...+||||.+.....+....+. .-..+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa-------rLpq~e~l 70 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLSPA-------RLPQGEQL 70 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeeccccc-------ccCccccc
Confidence 36999999999999999999933 455667899999999999999876655543111 11234456
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++|||||...+..++.+....|.+++|||+..|.++||.+.+-.......+.++++||+|..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 89999999999999999999999999999999999999999998877777777899999999975
No 78
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.82 E-value=2.8e-20 Score=174.26 Aligned_cols=99 Identities=26% Similarity=0.358 Sum_probs=88.0
Q ss_pred hhcCCchhccceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeeccccccc
Q 003165 622 EEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHR 701 (843)
Q Consensus 622 ~~~~~~~~~~~~v~~~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~ 701 (843)
.++||+..+++.+|.++|...++|+|.+.+.+..++++++++|++||++|+++|||+|+||.||+|+|.|+.+|. .++
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 99 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDS 99 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTB
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcC
Confidence 357888889999999999887789999999999999999999999999999999999999999999999999996 344
Q ss_pred CCCchHHHHHHHHHHHHHhcC
Q 003165 702 GGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 702 ~~~~~~~a~~~a~~~al~~a~ 722 (843)
+..+|++|+++||++||++|+
T Consensus 100 ~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 100 SPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 466789999999999999985
No 79
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=2.8e-18 Score=199.88 Aligned_cols=129 Identities=28% Similarity=0.283 Sum_probs=90.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc--CcCCCC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK--GERNGN 96 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--~~~~~~ 96 (843)
...|+|+||+|||||||+++|.+..-.. ..+ .|+|.......+.+........... .....+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~--------------ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REA--------------GGITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc--ccC--------------CceecccCeeEeeeccccccccccccccccccc
Confidence 3469999999999999999996542211 112 2344443333332221000000000 000011
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
...++|||||||.+|...+..+++.+|++++|+|+++|+.+||..++..+...++|+++++||+|+.
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1248999999999999999999999999999999999999999999998888899999999999985
No 80
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=2.5e-20 Score=161.22 Aligned_cols=80 Identities=66% Similarity=1.192 Sum_probs=76.1
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+++|++|++++|+|+++|++|||.|++++..++++.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876655669999999999999999999999999999999999999986
No 81
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=3.2e-20 Score=159.55 Aligned_cols=78 Identities=26% Similarity=0.519 Sum_probs=74.6
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+++|+||++++|+|+++|++|||+|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999988654 478999999999999999999999999999999999999986
No 82
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=1.3e-19 Score=188.03 Aligned_cols=140 Identities=25% Similarity=0.276 Sum_probs=111.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc-eEeecCcccccccCeeEeeeeEEEEEeecccccccc--------cC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY--------KG 91 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~--------~~ 91 (843)
+|+++||.++|||||+++|.. +..... .|. ...+|.+++|.+||+|+..+...+.+...+..+... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~-~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNG-RGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCC-CCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 478999999999999999964 334332 232 457899999999999987776666665332211110 01
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.+++.++|+|||||.+|..++.+++. .+|++++|||+.+|+..+++.++..+...++|+++++||+|+.
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 12345789999999999999999999986 7999999999999999999999999999999999999999975
No 83
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.80 E-value=2.2e-19 Score=184.31 Aligned_cols=131 Identities=27% Similarity=0.273 Sum_probs=103.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccc----c-------c
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL----K-------S 88 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~----~-------~ 88 (843)
+||+++||+|||||||+++| .+ ..+|+.++|++||+|+..+...+.|....+.. . .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 58999999999999999999 33 34688899999999999988888764110000 0 0
Q ss_pred ccC------cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC-cccccHHHHHHHHHcCCC-ceEEEEECC
Q 003165 89 YKG------ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERI-RPVLTVNKM 160 (843)
Q Consensus 89 ~~~------~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-gv~~qt~~~l~~~~~~~~-p~ilviNKi 160 (843)
... ......+.++|||||||.+|..++..+++.+|++++|+|+.+ +...++..++..+...++ |+++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 000 011123789999999999999999999999999999999998 477899988887776676 467899999
Q ss_pred ccc
Q 003165 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 986
No 84
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=5.9e-20 Score=157.91 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=74.2
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+++|+||++++|+|+++|++|||+|.+++..+ +.+.|+|.+|++|++||+++||++|+|+|+|+++|+||++|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999887654 589999999999999999999999999999999999999984
No 85
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=8.9e-20 Score=154.82 Aligned_cols=73 Identities=41% Similarity=0.665 Sum_probs=68.3
Q ss_pred CCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEec
Q 003165 485 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 485 ~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
|+|+++++|+|.+++|.++|.+||++|++|||+|++.+| +|||++|+||||+||||+++||+++| |+++++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999998 89999999999999999999999999 99999874
No 86
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=1e-19 Score=156.65 Aligned_cols=78 Identities=32% Similarity=0.566 Sum_probs=74.5
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|+||++++|+|+++|++|||+|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988654 478999999999999999999999999999999999999986
No 87
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.78 E-value=3.9e-19 Score=153.10 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=73.7
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeec
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||+++|.||++++|+|+++|++|||+|.+.+..++ +.+.|+|.+|++|++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~-~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGN-GRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCC-CEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 8999999999999999999999999999999886542 57899999999999999999999999999999999999975
No 88
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=5.8e-19 Score=152.36 Aligned_cols=79 Identities=38% Similarity=0.590 Sum_probs=75.1
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeecC
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||.++|+||++++|+|+++|++|||+|.+++..+ ++.+.|+|.+|++|++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988655 3589999999999999999999999999999999999999985
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.76 E-value=8.1e-18 Score=171.23 Aligned_cols=132 Identities=28% Similarity=0.375 Sum_probs=106.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++||+|+|||||+++|+...+ ...+|..++|++||+|+.....++.+..... .......+++++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEeccccc--ccccccccccCceE
Confidence 799999999999999999976421 2457888899999999999888877752110 00001123447899
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||.+|..++..+++.+|++++|+|+.+|.+.++...+..+...+.|+++++||+|+.
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999999999999999999999999999999999999898877777666788999999999986
No 90
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.74 E-value=2.1e-18 Score=148.69 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=73.0
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecceeec
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
|||++++|.||++++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999886542 37889999999999 699999999999999999999999975
No 91
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.73 E-value=4.6e-17 Score=164.34 Aligned_cols=127 Identities=43% Similarity=0.625 Sum_probs=108.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+|+|.+|+|||||+++|+................++....|..+|+|+......+.+. ...+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------DRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------CEEE
Confidence 689999999999999999998876654432222346777888899999988776666664 6789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+||||||+.+|......+++.+|++++|+|+.++...+....+..+...+.|+++++||+|+.
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 999999999999999999999999999999999998888888888888889999999999987
No 92
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.72 E-value=2.6e-17 Score=146.83 Aligned_cols=94 Identities=37% Similarity=0.679 Sum_probs=81.1
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
++|+|||+.++++.|++++|+|||||+|++||.|++++++++.+.+++...++|++||.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987654433222344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003165 456 GLDQFITKNATLTN 469 (843)
Q Consensus 456 gl~~~~~~tgTl~~ 469 (843)
|+++.+++++|+++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999988888874
No 93
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.69 E-value=2.4e-16 Score=155.19 Aligned_cols=115 Identities=32% Similarity=0.365 Sum_probs=93.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|... ..+..+.|..+++|+......+.+. .+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec---------------CCcEE
Confidence 7999999999999999999321 1233455667788887766555553 15689
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC-ceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-p~ilviNKiD~~ 163 (843)
++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 999999999999999999999999999999999888888877766555566 888999999986
No 94
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.68 E-value=1.6e-16 Score=138.77 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=73.8
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeE
Q 003165 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (843)
Q Consensus 373 ~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv 452 (843)
++||+++|||+.++++.|+ ++|+|||||+|++|+.|++.+ +. .+++.+||.++|.+..++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEE
Confidence 3799999999999999887 999999999999999998532 22 279999999999999999999999999
Q ss_pred EEeccccccccce-eee
Q 003165 453 AMVGLDQFITKNA-TLT 468 (843)
Q Consensus 453 ~i~gl~~~~~~tg-Tl~ 468 (843)
++.|++++ .+| ||+
T Consensus 70 ai~gl~~~--~~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGL--RVGDVLG 84 (85)
T ss_pred EEECCCCC--cCccccC
Confidence 99999987 667 764
No 95
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.67 E-value=1.3e-16 Score=166.55 Aligned_cols=306 Identities=19% Similarity=0.275 Sum_probs=210.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCce-EeecCcccccccCeeEeeeeEEEEEeecccccccccC-------
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV-RMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG------- 91 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~-~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~------- 91 (843)
-.|+++|.+|+|||||+..| ..|.++.. .|.. ..+..+++|.+.|.|.+...-.+.|+..++.+.+..+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVL--THgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVL--THGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeee--eecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 46999999999999999988 44555442 2322 3567789999999999888888888776666655432
Q ss_pred --cCCCCceEEEEEeCCCCcccHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccc
Q 003165 92 --ERNGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 92 --~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~ 167 (843)
.++..-..|+|||..||+.|.+.+..++. .-|..+|+|.+..|+-..|++++..+....+|+.+|++|||.+
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC---- 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC---- 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC----
Confidence 13444668999999999999999998885 5799999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeec--ccCccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
.++ .+++....+..++.+ |....+|+ .|- +..
T Consensus 287 PAN------iLqEtmKll~rllkS------------~gcrK~PvlVrs~-DDV--------------------------- 320 (641)
T KOG0463|consen 287 PAN------ILQETMKLLTRLLKS------------PGCRKLPVLVRSM-DDV--------------------------- 320 (641)
T ss_pred cHH------HHHHHHHHHHHHhcC------------CCcccCcEEEecc-cce---------------------------
Confidence 554 344444444444432 22222222 110 000
Q ss_pred cCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhh
Q 003165 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW 325 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (843)
. ..+..|....+-||+++.... .+.
T Consensus 321 ------------v-------~~A~NF~Ser~CPIFQvSNVt--------------------G~N---------------- 345 (641)
T KOG0463|consen 321 ------------V-------HAAVNFPSERVCPIFQVSNVT--------------------GTN---------------- 345 (641)
T ss_pred ------------E-------EeeccCccccccceEEecccc--------------------CCC----------------
Confidence 0 112233333445555332211 111
Q ss_pred ccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEec
Q 003165 326 LPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVST 405 (843)
Q Consensus 326 ~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~ 405 (843)
-+||.++.+.+|.-. ..+.+.|.-..|-.+++.+..|. ++-+-.++|+++-
T Consensus 346 ----L~LLkmFLNlls~R~------------------------~~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtIrL 396 (641)
T KOG0463|consen 346 ----LPLLKMFLNLLSLRR------------------------QLNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTIRL 396 (641)
T ss_pred ----hHHHHHHHhhcCccc------------------------ccccCCCcceeecceEecCCcce-EeecceeeeeEEe
Confidence 246677777775531 11234566778888899999998 8889999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeE--EEeccccccccce-eeecCC
Q 003165 406 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 406 g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv--~i~gl~~~~~~tg-Tl~~~~ 471 (843)
+|.+.. ||.. ..++....|+.|. +++.+|..+.+|+-. |+.+++...++-| .+.+++
T Consensus 397 ND~LlL-GPd~----~G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 397 NDILLL-GPDS----NGDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ccEEEe-cCCC----CCCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 999974 4432 1234445666665 688899999999984 5556666555667 666654
No 96
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.65 E-value=7.2e-16 Score=142.68 Aligned_cols=75 Identities=8% Similarity=-0.066 Sum_probs=67.0
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHHHHhcC
Q 003165 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (843)
++.|.+.+.|+.+++++.++|++|+++|+++||| |+||.||+|+|.|+.+|. ||+..+ |..|+++|+++|+.+|+
T Consensus 40 g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~a---f~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 40 GLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAAD---FRELTPRVLRQALKKAG 115 (115)
T ss_pred CcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 4678888888889999999999999999999999 999999999999999997 666554 45899999999999874
No 97
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.65 E-value=1.4e-14 Score=176.51 Aligned_cols=116 Identities=23% Similarity=0.202 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc--CcCCCCceEEEEEeCCCCc
Q 003165 32 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK--GERNGNEYLINLIDSPGHV 109 (843)
Q Consensus 32 KTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~liDTPGh~ 109 (843)
||||+++|-..+ ..++...|||.+.+...+.++.....-.... ...+.+...++|||||||.
T Consensus 474 KTtLLD~iR~t~----------------v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTR----------------VAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCC----------------cccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 999999992221 1344567999999888777652110000000 0001112348999999999
Q ss_pred ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 110 DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 110 df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+|.....++++.+|++++|+|+++|+++||..++..+...++|+++++||+|+.
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999988889999999999999999999999999999988899999999999984
No 98
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.62 E-value=1.5e-15 Score=132.38 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=72.4
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|+|+|||++++++.|. ++|+|||||+|++||.|++.+. +. .+++.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999886 9999999999999999997532 22 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003165 456 GLDQFITKNA-TLTN 469 (843)
Q Consensus 456 gl~~~~~~tg-Tl~~ 469 (843)
|++++ ++| |||+
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99987 677 8763
No 99
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.60 E-value=5.3e-15 Score=131.72 Aligned_cols=91 Identities=51% Similarity=0.943 Sum_probs=74.4
Q ss_pred eEEEEEEeeecC-CCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE
Q 003165 376 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 376 lva~VfK~~~~~-~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
++++|||+.+++ ..| +++|+|||||+|++|+.+++.+++++....+...++++++||.++|.+..++++|+|||||+|
T Consensus 1 ~v~~v~Ki~~~~~~~g-~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGG-FIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCE-EEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999998 555 599999999999999999987654332112223357999999999999999999999999999
Q ss_pred eccccccccceeeec
Q 003165 455 VGLDQFITKNATLTN 469 (843)
Q Consensus 455 ~gl~~~~~~tgTl~~ 469 (843)
.|++++ ++|++++
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999886 6776553
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=9.9e-15 Score=144.50 Aligned_cols=114 Identities=30% Similarity=0.379 Sum_probs=88.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+|+|+.|+|||||+++|....-.. ...+++|.......+.+. .+.+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~-------------~~~~~~~ 52 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA----------------GEAGGITQHIGAFEVPAE-------------VLKIPGI 52 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc----------------ccCCCeEEeeccEEEecc-------------cCCcceE
Confidence 58999999999999999995422110 112344544333333321 0126789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++|||||+.+|......+++.+|++++|+|++++...++...+..+...++|+++++||+|+.
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 999999999998888889999999999999999988888888888888899999999999987
No 101
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.60 E-value=6.3e-15 Score=137.16 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=68.4
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcC
Q 003165 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (843)
+|.|.+.+.+..++++++++|++||++|+++|||||+||+|++|+|.++.+|.+ +....++++|+++||++||++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 40 GVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred CcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 577888888888999999999999999999999999999999999999999963 23456788999999999999874
No 102
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=7.1e-15 Score=160.89 Aligned_cols=115 Identities=25% Similarity=0.339 Sum_probs=100.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
....|||+|++|+|||||+|+|+.....|....+| +|+++-.+.+.|+ +
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~----------------~ 225 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD----------------G 225 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC----------------C
Confidence 35789999999999999999999988888776666 4777777777775 8
Q ss_pred eEEEEEeCCCCcc----------cH-HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD----------FS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d----------f~-~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+|||.|... |. ..+..++..||.+++|+||.+|++.|...+..++.+.+.++++++||||..
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 8999999999632 32 357789999999999999999999999999999999999999999999986
No 103
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.59 E-value=4.3e-15 Score=129.57 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=70.9
Q ss_pred EEEEEeee---cCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE
Q 003165 378 LYVSKMIP---ASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 378 a~VfK~~~---~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
|+|||+.+ +++.|+ ++|+|||||+|++||.|++.. .++ .+++++||.++|.+..++++|.|||||++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999887 999999999999999999642 222 27999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003165 455 VGLDQFITKNA-TLTN 469 (843)
Q Consensus 455 ~gl~~~~~~tg-Tl~~ 469 (843)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 677 8875
No 104
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=1.9e-14 Score=165.38 Aligned_cols=115 Identities=25% Similarity=0.300 Sum_probs=92.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+|+|++|+|||||+++|++....+... ..|.|.......+.+. +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD----------------G 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC----------------C
Confidence 45789999999999999999997765443332 2356766655555553 6
Q ss_pred eEEEEEeCCCCcccH-----------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+.. ..+..+++.+|++|+|+|+.+|.+.|+..++.++...++|+++++||+|+.
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 789999999975321 235568899999999999999999999999999999999999999999976
No 105
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.57 E-value=9.2e-15 Score=127.45 Aligned_cols=81 Identities=32% Similarity=0.434 Sum_probs=71.9
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
++|+|||+.++++.|+ ++|+|||||+|++||.|++++. +. .+++.+|+.++|.+..++++++|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK----GK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC----Cc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999998887 9999999999999999997642 22 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003165 456 GLDQFITKNA-TLT 468 (843)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (843)
|++++ ++| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99986 677 775
No 106
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.56 E-value=1.3e-14 Score=125.77 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=69.5
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|+|+|||+.+++. |+ ++|+|||||+|++||.|+++. .++ .+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999977 87 999999999999999999753 222 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003165 456 GLDQFITKNA-TLT 468 (843)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (843)
|++ + ++| ||+
T Consensus 70 g~~-~--~~Gdtl~ 80 (81)
T cd04091 70 GID-C--ASGDTFT 80 (81)
T ss_pred CCC-c--ccCCEec
Confidence 997 5 677 876
No 107
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.1e-14 Score=163.55 Aligned_cols=129 Identities=23% Similarity=0.327 Sum_probs=96.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccc--cCcCCCCc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY--KGERNGNE 97 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 97 (843)
.-+||+||+|+|||-|++.+-..+ + .+...-|||.......|...+....-+.+ +.....+-
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tN--V--------------qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv 539 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTN--V--------------QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKV 539 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccc--c--------------ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCC
Confidence 467999999999999999994321 1 11222367777666555433111000001 11111233
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCcccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~ 164 (843)
--+.+||||||..|.....++...||.||||||..+|+.+||.+-++.+...+.|+||++||+||++
T Consensus 540 Pg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 540 PGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred CeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 4688999999999999999999999999999999999999999999999999999999999999973
No 108
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=6.7e-14 Score=160.57 Aligned_cols=114 Identities=26% Similarity=0.288 Sum_probs=90.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|+.....+... ..|+|.......+.+. +.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~~ 220 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN----------------GK 220 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC----------------Cc
Confidence 4689999999999999999997655433322 2345665554555553 56
Q ss_pred EEEEEeCCCCcccH-----------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.+|||||+.++. ..+..+++.+|++|+|+|+.+|.+.++..+++++...++|+++++||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 89999999986542 234568899999999999999999999999999989999999999999976
No 109
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=5.4e-14 Score=154.06 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=95.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..|+|+|.+|+|||||.|+|+...-+|.....| .|.+..+....|. ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG---------------vTRDr~y~~~~~~----------------~~~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG---------------VTRDRIYGDAEWL----------------GRE 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC---------------CccCCccceeEEc----------------Cce
Confidence 579999999999999999997766666555444 5666666677776 778
Q ss_pred EEEEeCCCCcccH---------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~---------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.+|||+|..+.. .++..|+..||+++||||+.+|++++.+.+.+.+...++|+++|+||+|..
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 9999999987432 357889999999999999999999999999999988889999999999965
No 110
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.51 E-value=8.2e-14 Score=122.30 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=72.2
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|.++|||+..+++.|+ ++|+|||||+|++||.|++.+++ . +...+++.+|+.++|.+..++++++|||||++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999998887 99999999999999999976432 1 112368999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003165 456 GLDQFITKNA-TLT 468 (843)
Q Consensus 456 gl~~~~~~tg-Tl~ 468 (843)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99887 667 765
No 111
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.51 E-value=4.4e-14 Score=131.31 Aligned_cols=83 Identities=22% Similarity=0.143 Sum_probs=71.6
Q ss_pred eccCCC-CCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHH
Q 003165 637 FGPETT-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 637 ~~P~~~-g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (843)
++|... .+|.|.+++.|..++++++++|.+||++|+++||++|+||+|++|+|.++.+|. |+. ...|+.|+++|+
T Consensus 32 v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~ 108 (116)
T cd01434 32 IEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAF 108 (116)
T ss_pred EEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHH
Confidence 555332 357888888889999999999999999999999999999999999999999996 554 446779999999
Q ss_pred HHHHHhcC
Q 003165 715 YASQLTAK 722 (843)
Q Consensus 715 ~~al~~a~ 722 (843)
++|+.+|+
T Consensus 109 ~~al~~a~ 116 (116)
T cd01434 109 KEAFKKAK 116 (116)
T ss_pred HHHHHhcC
Confidence 99999874
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=3.4e-13 Score=133.61 Aligned_cols=114 Identities=26% Similarity=0.339 Sum_probs=84.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|+.....+... .++.|.......+.+. +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~ 50 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD---------------IAGTTRDSIDVPFEYD----------------GK 50 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC---------------CCCCccCceeeEEEEC----------------Ce
Confidence 4679999999999999999996543322111 1233443333333332 56
Q ss_pred EEEEEeCCCCcccH-----------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 78999999986541 234456789999999999999888888888888877889999999999987
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=1.1e-13 Score=134.95 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=82.8
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEE
Q 003165 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINL 102 (843)
Q Consensus 23 ~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (843)
+++|++|+|||||+++|+........ ...++|.........+. ++.+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i 49 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFIL 49 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEE
Confidence 58999999999999999643211111 11233443333333333 678999
Q ss_pred EeCCCCcccHH--------HHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 103 IDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 103 iDTPGh~df~~--------e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|||||+.++.. +....++.+|++++|+|+.++....+..+++.+...+.|+++++||+|+.
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 99999998644 55678899999999999999888888778788878889999999999987
No 114
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.49 E-value=1.5e-13 Score=136.02 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++|+.|+|||||+++|....... .+. ... +...|+......+.++ +..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~------~~~--~~~~t~~~~~~~~~~~----------------~~~~ 52 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL------PPS--KITPTVGLNIGTIEVG----------------NARL 52 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC------ccc--ccCCccccceEEEEEC----------------CEEE
Confidence 68999999999999999996643220 110 000 1122444333445554 6899
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHHH----cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|.......++.+|++++|+|+.+.-... ....+..+. ..++|+++++||+|+.
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 99999999999998999999999999999998642211 122222222 3478999999999986
No 115
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=3.5e-13 Score=130.05 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=101.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-+|+|+|..|+||||+++++..+...+...... .+.... +|..|+.....++.+. .++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~---------------~~~ 68 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD---------------EDT 68 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc---------------Ccc
Confidence 3589999999999999999998877654432111 011111 4567887777777665 258
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCC-CceEEEEECCccccccccCC-HHH
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRCFLELQVD-GEE 173 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~-~p~ilviNKiD~~~~~~~~~-~~~ 173 (843)
.++|.|||||.+|...+...++.++|+|++||++.+.....+.+++.....+ +|.+|++||.|+. ++. +++
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~----~a~ppe~ 141 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF----DALPPEK 141 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC----CCCCHHH
Confidence 9999999999999999999999999999999999987776677777776666 8999999999998 664 444
No 116
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=1.4e-12 Score=150.74 Aligned_cols=115 Identities=23% Similarity=0.336 Sum_probs=87.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|++|+|||||+++|+.....+..... |+|.+.....+.+. +
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~---------------gtT~d~~~~~~~~~----------------~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA---------------GTTVDPVDSLIELG----------------G 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CccCCcceEEEEEC----------------C
Confidence 4689999999999999999999765433222222 34544433444443 6
Q ss_pred eEEEEEeCCCCc---------ccHHH--HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~---------df~~e--~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.||||||.. +|... ...+++.+|++|+|+|++++.+.+...++..+...++|+|+|+||+|+.
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 678999999962 33332 2356789999999999999999999888888888899999999999986
No 117
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.4e-13 Score=140.86 Aligned_cols=134 Identities=27% Similarity=0.353 Sum_probs=104.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEE-Eeeccccc------ccc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLY-YEMTDDAL------KSY 89 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~-~~~~~~~~------~~~ 89 (843)
+...||+-+||+-|||||++.++ .|- .+-.++.|-||.|||+..+.... |.+.++.- +++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi-----------SGv--~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI-----------SGV--HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee-----------ccc--eEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 45679999999999999999988 552 23346678899999998877655 55554321 111
Q ss_pred --------cCc---CCCC---ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-ccccHHHHHHHHHcCCCceE
Q 003165 90 --------KGE---RNGN---EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIRPV 154 (843)
Q Consensus 90 --------~~~---~~~~---~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l~~~~~~~~p~i 154 (843)
.|. .+++ -.++.|+|||||.-+...|..+....|+|+|+|.+.+. .++||.+++....-++++.|
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 111 1111 35789999999999999999999999999999999984 68999999988888887655
Q ss_pred -EEEECCccc
Q 003165 155 -LTVNKMDRC 163 (843)
Q Consensus 155 -lviNKiD~~ 163 (843)
++-||+|+.
T Consensus 183 iilQNKiDli 192 (466)
T KOG0466|consen 183 IILQNKIDLI 192 (466)
T ss_pred EEEechhhhh
Confidence 688999987
No 118
>COG1159 Era GTPase [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=141.23 Aligned_cols=115 Identities=30% Similarity=0.347 Sum_probs=89.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+.--|||+|.+|+|||||+|+|+...-+|....+.++|. +-+|| +.. .+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~-------~I~GI--------~t~----------------~~ 53 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-------RIRGI--------VTT----------------DN 53 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh-------heeEE--------EEc----------------CC
Confidence 345799999999999999999988776666544443210 01122 111 37
Q ss_pred eEEEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.+.|+||||... ...++..++..+|.+++|||+.++.....+.++..+...+.|+++++||+|+.
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 8999999999532 34567788999999999999999999999999988877778999999999977
No 119
>PRK15494 era GTPase Era; Provisional
Probab=99.45 E-value=7.1e-13 Score=146.40 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=81.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|++|+|||||+++|+...-.+.....+ .|.......+.++ +
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~---------------tTr~~~~~~~~~~----------------~ 99 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ---------------TTRSIITGIITLK----------------D 99 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC---------------CccCcEEEEEEeC----------------C
Confidence 34589999999999999999996543222211122 2322222223333 6
Q ss_pred eEEEEEeCCCCccc--------HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||..+. ......+++.+|++++|+|+.++....+..++..+...+.|+++|+||+|+.
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 78999999998542 2223456789999999999998887777777777777788999999999986
No 120
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.44 E-value=3.2e-13 Score=118.36 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=67.3
Q ss_pred eEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 lva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|.|+|||+.++++.|+ ++|+|||||+|++||.|++.. .++ .+++++|+. ++.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~-----~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGK-----EYEVEEVGI-FRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCC-----eEEEEEEEE-ECCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999999653 222 279999995 58888999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003165 456 -G---LDQFITKNA-TLTN 469 (843)
Q Consensus 456 -g---l~~~~~~tg-Tl~~ 469 (843)
| ++++ .+| |||+
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5655 567 8763
No 121
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.43 E-value=3.1e-13 Score=126.49 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=57.1
Q ss_pred CccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcC
Q 003165 653 GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 653 g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~ 722 (843)
+..++++++++|++|++.|+++|||+|+||+|++|+|.++.+|...+. ..++.|++.|+++||.+|+
T Consensus 54 ~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~al~~a~ 120 (120)
T cd01693 54 IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKALKSAG 120 (120)
T ss_pred CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHHHHhcc
Confidence 556889999999999999999999999999999999999999963211 2234789999999999874
No 122
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=4.6e-13 Score=153.62 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=89.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+|+|++|+|||||+++|+.....+.... .|+|.+.....+.|. +..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~---------------~g~t~d~~~~~~~~~----------------~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT---------------PGVTRDRKYGDAEWG----------------GREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC---------------CCcccCceEEEEEEC----------------CeEE
Confidence 489999999999999999965443332211 245555555556664 6789
Q ss_pred EEEeCCCCc--------ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~--------df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++|||||+. .+...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|..
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 999999984 345667888999999999999999999999888888888899999999999976
No 123
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=8.2e-13 Score=130.67 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=79.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|+.|+|||||+++|+.. .... +....++.......+.+. +..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~ 51 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--TFSE--------------RQGNTIGVDFTMKTLEIE--------------GKR 51 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCcc--------------cCCCccceEEEEEEEEEC--------------CEE
Confidence 3589999999999999999999542 1111 000111112222223332 224
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++..+.+....|. .+. ..++|+++|+||+|+.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 68899999999999998999999999999999999865544433342 222 3467899999999986
No 124
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=8.9e-13 Score=152.40 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=90.0
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
..++.+|+|+|++|+|||||+++|+.....+... ..|+|.+.....+.|.
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~---------------~~gvT~d~~~~~~~~~--------------- 84 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVED---------------VPGVTRDRVSYDAEWN--------------- 84 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC---------------CCCCCEeeEEEEEEEC---------------
Confidence 3467899999999999999999996543222221 2245555444444453
Q ss_pred CceEEEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..++||||||+.. |...+..+++.||++|+|+|++++.+.....++..+...++|+++|+||+|+.
T Consensus 85 -~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 -GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred -CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 67899999999863 45556778999999999999999988777777777778889999999999986
No 125
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.42 E-value=2.9e-12 Score=128.88 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=80.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+|+|+.|+|||||+++|+..... .. +.+ ..|.|..... +.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~-------~~~------~~~~t~~~~~--~~~----------------- 62 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-AR-------TSK------TPGRTQLINF--FEV----------------- 62 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------ccC------CCCcceEEEE--EEe-----------------
Confidence 56779999999999999999999654211 00 000 1123332221 111
Q ss_pred ceEEEEEeCCCCc----------ccHHHHHHHhh---ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~----------df~~e~~~~l~---~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.+|||||+. +|...+...++ .+|++++|+|+..++..++..+++.+...++|+++++||+|+.
T Consensus 63 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 63 NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 1268999999963 24444444444 4689999999999999888888888888899999999999976
No 126
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.41 E-value=5.6e-13 Score=129.14 Aligned_cols=109 Identities=27% Similarity=0.330 Sum_probs=78.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||+|+|....-.+.+ . .|.|+......+.+. +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n-----------~-----pG~Tv~~~~g~~~~~----------------~~~~ 49 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGN-----------W-----PGTTVEKKEGIFKLG----------------DQQV 49 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEE-----------S-----TTSSSEEEEEEEEET----------------TEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecC-----------C-----CCCCeeeeeEEEEec----------------CceE
Confidence 6899999999999999999554422111 1 266887776677765 7899
Q ss_pred EEEeCCCCcccH----HH--HHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFS----SE--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~----~e--~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.|+|+||.-++. .| +..++ ...|++++|+||+. ..+...+..++.+.++|+++++||+|+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 999999964432 12 23333 57899999999986 3455567788889999999999999976
No 127
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.41 E-value=8.1e-12 Score=150.50 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++||+|+|||||+|+|...... .|. ..|.|+......+.+. ++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~-----vgn-----------~pGvTve~k~g~~~~~----------------~~~ 51 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQR-----VGN-----------WAGVTVERKEGQFSTT----------------DHQ 51 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc-----cCC-----------CCCceEeeEEEEEEcC----------------ceE
Confidence 57999999999999999999432211 121 1366776665556554 789
Q ss_pred EEEEeCCCCcccHH--------HHH--HHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSS--------EVT--AAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~--------e~~--~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++++||||+.+|.. |.. ..+ ..+|++++|+|++.... ...++.++.+.++|+++++||+|+.
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 99999999988753 211 222 37899999999988533 3346677788899999999999975
No 128
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.41 E-value=2.3e-12 Score=138.25 Aligned_cols=111 Identities=27% Similarity=0.203 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|++|+|||||+++|+...-.+.....++ |...... .... .+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~T---------------Tr~~i~~-i~~~---------------~~~qi 50 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQT---------------TRNRISG-IHTT---------------GASQI 50 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCc---------------ccCcEEE-EEEc---------------CCcEE
Confidence 589999999999999999976543332222221 2211111 1111 24679
Q ss_pred EEEeCCCCccc--------HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.|+||||+.+. ...+..+++.+|++++|+|++.+...+ ..++..+...+.|.++|+||+|+.
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 99999997642 234567789999999999999875554 556666667789999999999975
No 129
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.7e-13 Score=139.11 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=125.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceE-eecCcccccccCeeEeeeeEEEEEeecccccccccC-----cC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG-----ER 93 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~-----~~ 93 (843)
..++++|..|+|||||+..| ..|.+++. .|..+ -+..+++|.+.|.|...+.-.+.|+...+.+...++ -.
T Consensus 168 vRvAVlGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred EEEEEecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 46899999999999999988 55666553 34433 567889999999999888877888765544432222 24
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhc--cCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRI--TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~--~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (843)
+..++.++|||..||..|...++.+|.. -|.|+|||+|..|+...|++++..+...++|..++++|||+. ..
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~----~~-- 318 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV----DR-- 318 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc----cc--
Confidence 5568899999999999999999999864 599999999999999999999999999999999999999987 33
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 003165 172 EEAYQTFSRVVENANVIMA 190 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ 190 (843)
+-+++++.++..++.
T Consensus 319 ----~~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 319 ----QGLKKTVKDLSNLLA 333 (591)
T ss_pred ----hhHHHHHHHHHHHHh
Confidence 235555666555553
No 130
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=1.5e-12 Score=157.58 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=88.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|++|+|||||+++|+.....+..... |+|.+.....+.++ +
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~---------------gtT~d~~~~~~~~~----------------~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA---------------GTTRDPVDEIVEID----------------G 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC---------------CCCcCcceeEEEEC----------------C
Confidence 4589999999999999999999765433322222 34554444445554 5
Q ss_pred eEEEEEeCCCCc---------ccHHH--HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~---------df~~e--~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+. +|... ...+++.+|++++|+|++++.+.|+..++..+...++|+++|+||+|+.
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 678899999964 23322 3456789999999999999999999999988888899999999999986
No 131
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=1.5e-12 Score=149.54 Aligned_cols=113 Identities=23% Similarity=0.231 Sum_probs=87.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+... ..|+|.+.....+.|. +..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~----------------~~~ 50 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWL----------------GRE 50 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEEC----------------CcE
Confidence 479999999999999999996543322221 1244554444445554 678
Q ss_pred EEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+++|||||+.+ +...+..+++.+|++++|+|+.++.......+...+.+.+.|+++++||+|..
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 99999999988 33446678899999999999999988888878777778899999999999965
No 132
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=2.6e-12 Score=127.40 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=81.6
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEee--eeEEEEEeecccccccccC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKS--TGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~--~~~~~~~~~~~~~~~~~~~ 91 (843)
......++|+++|+.|+|||||+++|... .... ..+.|+.. ....+.+.
T Consensus 2 ~~~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~----------- 52 (169)
T cd04114 2 EDYDFLFKIVLIGNAGVGKTCLVRRFTQG--LFPP----------------GQGATIGVDFMIKTVEIK----------- 52 (169)
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHHhC--CCCC----------------CCCCceeeEEEEEEEEEC-----------
Confidence 33345789999999999999999999532 1111 01223222 22223332
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
+....+.++||||+.+|.......++.+|++++|+|+.++...+....| +.....++|.++++||+|+.
T Consensus 53 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 ---GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2345788999999999999999999999999999999876544333333 22233468889999999975
No 133
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.38 E-value=2.8e-12 Score=125.01 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+......... ..+.|.......+.+. +..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~ 51 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG----------------GIPV 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------CEEE
Confidence 68999999999999999996543221111 1234444333334343 5789
Q ss_pred EEEeCCCCcccHHH--------HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+++||||+.++... +...++.+|++++|+|+...........+.. ..+.|+++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 99999999877432 4457789999999999997555544444443 5678999999999987
No 134
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.37 E-value=6.1e-12 Score=129.11 Aligned_cols=130 Identities=17% Similarity=0.286 Sum_probs=82.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|+.|+|||||+.+|....- ..+ + .++......+... ...++..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~------~~t--~-----------~s~~~~~~~~~~~------------~~~~~~~ 49 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY------RST--V-----------TSIEPNVATFILN------------SEGKGKK 49 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------CCc--c-----------CcEeecceEEEee------------cCCCCce
Confidence 4799999999999999999954311 010 0 0111111111111 0123578
Q ss_pred EEEEeCCCCcccHHHHHHHhhcc-CcEEEEecCCCccc--ccHHHHHHHH------HcCCCceEEEEECCccccccccCC
Q 003165 100 INLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVLRQA------LGERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~-D~ailVvda~~gv~--~qt~~~l~~~------~~~~~p~ilviNKiD~~~~~~~~~ 170 (843)
+.|||||||.+|.......++.+ +++|+|+|+..... ..+...|..+ ...++|+++++||+|+. .+.
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~a~ 125 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----TAK 125 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----ccC
Confidence 99999999999999999999998 99999999988521 1122222211 12478999999999987 553
Q ss_pred -HHHHHHHHHHHHHH
Q 003165 171 -GEEAYQTFSRVVEN 184 (843)
Q Consensus 171 -~~~~~~~~~~~~~~ 184 (843)
.+.+.+.+.+-+..
T Consensus 126 ~~~~i~~~le~ei~~ 140 (203)
T cd04105 126 PAKKIKEQLEKELNT 140 (203)
T ss_pred CHHHHHHHHHHHHHH
Confidence 33444444444433
No 135
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.37 E-value=3.1e-12 Score=125.91 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++|. |... . + .....+.|. ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~-----------~~~~-~-----~--------~~~~~v~~~----------------~~- 39 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ-----------GNYT-L-----A--------RKTQAVEFN----------------DK- 39 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc-----------CCCc-c-----C--------ccceEEEEC----------------CC-
Confidence 579999999999999999983 2100 0 0 011223333 11
Q ss_pred EEEEeCCCC----cccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh----~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++|||||. .++..++..+++.+|++++|+|++++.+..+..++.. ..+.|+++++||+|+.
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 37999995 5677888888999999999999998866555444432 3467889999999987
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.36 E-value=5.8e-12 Score=124.94 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=71.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce-E
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY-L 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 99 (843)
||+++|++|+|||||+++|......+.. .. +.|.......+.+. ++ .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~----------------~~~~ 49 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD----------------DGRS 49 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC----------------CCCe
Confidence 7999999999999999999542221110 01 12333222233333 33 8
Q ss_pred EEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCc-ccccHHHHH-HHHHc-----CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l-~~~~~-----~~~p~ilviNKiD~~ 163 (843)
++|+||||+.+ +.....+.++.+|++++|+|++++ -..+....| ..+.. .++|+++|+||+|+.
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 99999999742 344555667789999999999986 233332222 22222 367899999999986
No 137
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.36 E-value=5.8e-12 Score=127.24 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred HHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccc
Q 003165 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.+..++....+-.+|+++|..|+|||||+++|.... ... ..+ |.......+.+.
T Consensus 6 ~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~--~~~----------~~~-------t~~~~~~~~~~~------- 59 (184)
T smart00178 6 DILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR--LAQ----------HQP-------TQHPTSEELAIG------- 59 (184)
T ss_pred HHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------cCC-------ccccceEEEEEC-------
Confidence 345566554556789999999999999999995321 100 000 111111223333
Q ss_pred cccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHH----cCCCceEEEEECCcc
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDR 162 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~----~~~~p~ilviNKiD~ 162 (843)
+..++++||||+..+......+++.+|++++|+|+++.-.. .....+..+. ..+.|+++++||+|+
T Consensus 60 ---------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 60 ---------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred ---------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 67899999999999988888999999999999999874222 1222232222 257899999999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
+
T Consensus 131 ~ 131 (184)
T smart00178 131 P 131 (184)
T ss_pred c
Confidence 6
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.36 E-value=2.6e-12 Score=124.48 Aligned_cols=113 Identities=26% Similarity=0.351 Sum_probs=72.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+... ... +..++++.......+.+. +..+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~---------------~~~~~~~~~~~~~~~~~~--------------~~~~~ 51 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT---------------EYKPGTTRNYVTTVIEED--------------GKTYK 51 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcC---------------cCCCCceeeeeEEEEEEC--------------CEEEE
Confidence 589999999999999999996543 211 112234444333333332 12378
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEec-------CCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVD-------CIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvd-------a~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.++||||+.+|........+.+++++.++| +.++...+...+++.+.. +.|+++++||+|+.
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCC
Confidence 9999999999996555554555555554444 444444444445555433 78999999999987
No 139
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.36 E-value=6.2e-12 Score=124.06 Aligned_cols=113 Identities=14% Similarity=0.252 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++++...- ... . ....+.++.... ... +++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~---------~---~~~~~~~~~~~~--~~~--------------~~~~~~~ 51 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--EPQ---------Q---LSTYALTLYKHN--AKF--------------EGKTILV 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC---------c---CCceeeEEEEEE--EEE--------------CCEEEEE
Confidence 689999999999999999964321 000 0 000011221111 111 2246789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc--CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++++|+|++++...+....| ..+.+ .++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999999999999999999999999999999887655544333 33322 368999999999975
No 140
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.35 E-value=4.4e-12 Score=153.49 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=90.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+|+|++|+|||||+++|+.....+... ..|+|.+.......|. +
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~---------------~pGvT~d~~~~~~~~~----------------~ 322 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED---------------TPGVTRDRVSYDAEWA----------------G 322 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCeeEEEEEEEEEEC----------------C
Confidence 46899999999999999999996543322221 1245655444444454 6
Q ss_pred eEEEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+++|||||... |...+..+++.+|++|+|+|+.+|+......+++.+...++|+++|+||+|+.
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 7899999999763 55667788999999999999999998888888888888899999999999976
No 141
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.35 E-value=4.6e-12 Score=124.24 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++++.... .. . -.|+......+.+. ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~----------~-------~~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT----------T-------IPTIGFNVETVEYK----------------NVSF 45 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC----------C-------CCCcCcceEEEEEC----------------CEEE
Confidence 589999999999999999965431 00 0 01222222233343 6789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-ccHHHHHHH----HHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~qt~~~l~~----~~~~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++++|+|++.+-. .+....+.. +...+.|+++++||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 999999999998888888999999999999997521 122223332 223578999999999987
No 142
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.35 E-value=7.7e-12 Score=122.93 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|......... +. + .-|.++ ..+.+ ++..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-------~~---~---t~g~~~----~~~~~----------------~~~~~ 47 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-------IV---P---TVGFNV----ESFEK----------------GNLSF 47 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-------ec---C---ccccce----EEEEE----------------CCEEE
Confidence 5899999999999999999542111000 00 0 011111 12222 26789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHH------cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~------~~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|......+++.+|++|+|+|+++...... ...+..+. ..++|+++++||+|+.
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999999999999999999999999999988643211 11122221 2468999999999986
No 143
>PRK00089 era GTPase Era; Reviewed
Probab=99.35 E-value=1.2e-11 Score=134.48 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=81.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+...|+++|++|+|||||+++|+...-.+.....++ |.... ..+ +. ..+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~t---------------t~~~i-~~i-~~--------------~~~ 52 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT---------------TRHRI-RGI-VT--------------EDD 52 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCc---------------ccccE-EEE-EE--------------cCC
Confidence 456799999999999999999975433222211111 11110 011 11 124
Q ss_pred eEEEEEeCCCCccc--------HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.++||||+.+. ...+..++..+|++++|+|+.++.......++..+...+.|+++++||+|+.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 68999999997653 3455667889999999999999777777777777766678999999999976
No 144
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.34 E-value=6.6e-12 Score=124.98 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=78.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++++... .. .+....+........+.+ ++..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~--------------~~~~~t~~~~~~~~~~~~--------------~~~~~ 51 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FP--------------ERTEATIGVDFRERTVEI--------------DGERI 51 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CC--------------CccccceeEEEEEEEEEE--------------CCeEE
Confidence 5789999999999999999995311 11 011111111111122222 23467
Q ss_pred EEEEEeCCCCcccHH-HHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~----~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.. .....++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 52 ~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 52 KVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred EEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 899999999999875 4566788999999999999876666655554 3322 357999999999976
No 145
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.34 E-value=6.4e-12 Score=127.40 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccc
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
..+.+.|+...+..+|+++|+.|+|||||+++|.... ... + ..|+......+.+.
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~~----------~-------~~T~~~~~~~i~~~------ 61 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR--LAQ----------H-------VPTLHPTSEELTIG------ 61 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------c-------CCccCcceEEEEEC------
Confidence 3445566666667889999999999999999994321 100 0 00222222334443
Q ss_pred ccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHHH----cCCCceEEEEECCc
Q 003165 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMD 161 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~~----~~~~p~ilviNKiD 161 (843)
+..++++||||+.+|......+++.+|++++|+|+.+.-..+ ....+.... ..+.|+++++||+|
T Consensus 62 ----------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 62 ----------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred ----------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCC
Confidence 578999999999999888888899999999999998642211 122222222 34689999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 132 l~ 133 (190)
T cd00879 132 LP 133 (190)
T ss_pred CC
Confidence 86
No 146
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.34 E-value=6.3e-12 Score=123.68 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=78.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+...-.... ...++.......+.+ ++....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~~~~~l 51 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS----------------QHTIGVEFGSKIIRV--------------GGKRVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeeEEEEEEEE--------------CCEEEEE
Confidence 7999999999999999999653211100 001111111111222 1235789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH----HHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~----~~~~~~p~ilviNKiD~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|++++.+.+....|.. ....+.|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999988999999999999999998765554433422 223578899999999986
No 147
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=9.2e-12 Score=124.33 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=76.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|.... .. .. +. |+......+.++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~--~~----------~~---~~----t~g~~~~~~~~~---------------- 56 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGED--ID----------TI---SP----TLGFQIKTLEYE---------------- 56 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCC--CC----------Cc---CC----ccccceEEEEEC----------------
Confidence 345689999999999999999995421 00 00 01 111111223332
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHH----HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~----~~~~~p~ilviNKiD~~ 163 (843)
+..++++||||+..|.......++.+|++++|+|+++.-..+. ...+... ...+.|+++++||+|+.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 5789999999999998888889999999999999988532211 1112221 23567999999999986
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.34 E-value=3.1e-12 Score=125.14 Aligned_cols=106 Identities=22% Similarity=0.233 Sum_probs=75.5
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEE
Q 003165 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||++++...... . ....|+|+......+.+. +..+++|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-----~-----------~~~~~~t~~~~~~~~~~~----------------~~~~~li 48 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-----V-----------GNWPGVTVEKKEGRFKLG----------------GKEIEIV 48 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-----c-----------cCCCCcccccceEEEeeC----------------CeEEEEE
Confidence 5899999999999999432110 0 112356776655566664 5689999
Q ss_pred eCCCCcccHHH------HHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 104 DSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~~e------~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
||||+.+|... ....+ ..+|++++|+|+... .+....+.++...++|+++++||+|+.
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 99999887642 23344 389999999999873 223344456667789999999999986
No 149
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.34 E-value=6.7e-12 Score=123.64 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|.+|+|||||+++++..... ..... |+... ...+.+ ++...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~----------------t~~~~~~~~~~~--------------~~~~~ 50 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDP----------------TIEDSYTKQCEI--------------DGQWA 50 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCC----------------CccceEEEEEEE--------------CCEEE
Confidence 48999999999999999999754321 10011 11000 011112 12356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-----HHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-----~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++..+.+... +++.....+.|+++++||+|+.
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 8999999999999999999999999999999998754322221 2222223467999999999986
No 150
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.34 E-value=1.5e-11 Score=123.02 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=81.3
Q ss_pred HHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccc
Q 003165 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.+.+++... ..++|+++|+.|+|||||+++|.... ... . .-|+......+.++
T Consensus 5 ~~~~~~~~~-~~~kv~~~G~~~~GKTsl~~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~------- 57 (174)
T cd04153 5 SLWSLFFPR-KEYKVIIVGLDNAGKTTILYQFLLGE--VVH----------T-------SPTIGSNVEEIVYK------- 57 (174)
T ss_pred HHHHHhcCC-CccEEEEECCCCCCHHHHHHHHccCC--CCC----------c-------CCccccceEEEEEC-------
Confidence 344555432 35789999999999999999994321 100 0 01222222333343
Q ss_pred cccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHH-c---CCCceEEEEECCcc
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL-G---ERIRPVLTVNKMDR 162 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~-~---~~~p~ilviNKiD~ 162 (843)
+..+.++||||+..|.......++.+|++++|+|+++...... ...+..+. . .+.|+++++||+|+
T Consensus 58 ---------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 ---------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred ---------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 6789999999999999888899999999999999987532211 12222222 2 35799999999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 129 ~ 129 (174)
T cd04153 129 K 129 (174)
T ss_pred C
Confidence 6
No 151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=8.7e-12 Score=122.46 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|.... .. ++.+ |+......+.+. +..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~----------~~~~-------t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV----------TTIP-------TIGFNVETVTYK----------------NLKF 45 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc----------CcCC-------ccCcCeEEEEEC----------------CEEE
Confidence 48999999999999999994311 10 1101 221111223332 6789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHH-H---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA-L---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~-~---~~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|......+++.+|++|+|+|+++....+ ....+... . ..+.|+++++||+|+.
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 99999999999988888999999999999998743222 12222221 1 2468999999999987
No 152
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.33 E-value=1e-11 Score=115.42 Aligned_cols=107 Identities=22% Similarity=0.294 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+|+|.+|+|||||+++|+.......... .+.|.......+.+. +..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~---------------~~~T~~~~~~~~~~~----------------~~~~ 49 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI---------------PGTTRDPVYGQFEYN----------------NKKF 49 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS---------------TTSSSSEEEEEEEET----------------TEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc---------------ccceeeeeeeeeeec----------------eeeE
Confidence 489999999999999999975321111111 123443322233333 6677
Q ss_pred EEEeCCCCcc---------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEEC
Q 003165 101 NLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 159 (843)
Q Consensus 101 ~liDTPGh~d---------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNK 159 (843)
.|+||||..+ ........++.+|++++|+|+.+....+...+++++. .+.|+++|+||
T Consensus 50 ~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 50 ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 8999999754 2334666678999999999988855555667777775 88899999998
No 153
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.33 E-value=1.1e-11 Score=123.11 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|... .... + .-|+......+.+. +..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~--~~~~----------~-------~~t~g~~~~~~~~~----------------~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE--IPKK----------V-------APTVGFTPTKLRLD----------------KYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC--CCcc----------c-------cCcccceEEEEEEC----------------CEEE
Confidence 5899999999999999999432 1100 0 01222222233333 6889
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHHHc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+++.-..+ ....+..+.. .+.|+++|+||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 99999999999988899999999999999998743222 2223333322 467999999999987
No 154
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.32 E-value=1e-11 Score=122.12 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|....- .. + ....+..+.....+.+. ..+....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--~~---------~-----~~~t~~~~~~~~~~~~~------------~~~~~~~~ 53 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--TK---------D-----YKKTIGVDFLEKQIFLR------------QSDEDVRL 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC---------C-----CCCcEEEEEEEEEEEEc------------CCCCEEEE
Confidence 699999999999999999954211 00 0 00111111111112221 11346789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~---~~~~p~ilviNKiD~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|+++.-..+...-|.... ..++|+++++||+|+.
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999999999998999999999999999998755444433343222 2478999999999986
No 155
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.32 E-value=1.8e-11 Score=120.51 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+...- .. ...+.++.......+.+. +....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~~~~ 51 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GKRVKL 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 699999999999999999954321 00 001111222112222222 224689
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHc---CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~---~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++++|+|+.+..+.+....|. .... .++|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 99999999999999999999999999999998865554443342 2222 468999999999976
No 156
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.32 E-value=1e-11 Score=141.27 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=83.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+|+++|++|+|||||+++|+.....+..... |.|.+.....+.++ ++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p---------------gtTrd~~~~~i~~~----------------g~ 251 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK---------------GTTRDVVEGDFELN----------------GI 251 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC---------------CcEEEEEEEEEEEC----------------CE
Confidence 458999999999999999999765443333223 34544444445554 67
Q ss_pred EEEEEeCCCCcccHHH--------HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++||||..++... ...+++.+|++++|+|++.+.+.+.. .+..+...++|+++|+||+|+.
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 8999999998765532 34577899999999999987665554 4555555688999999999986
No 157
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.31 E-value=3.5e-11 Score=117.97 Aligned_cols=114 Identities=24% Similarity=0.220 Sum_probs=78.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.++|+++|++|+|||||+++|+...-....... +.+.......+.. ...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~----------------~~~ 51 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIYTD----------------DDA 51 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC---------------CceeceEEEEEEc----------------CCe
Confidence 467999999999999999999653211111000 0111111111111 256
Q ss_pred EEEEEeCCCCcccH--------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~--------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.+|||||+.+.. ......++.+|++++|+|+.+........+++.+...+.|.++++||+|+.
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 89999999986543 344566889999999999998766666666677777789999999999976
No 158
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.31 E-value=1.2e-11 Score=122.89 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++++...-.... . ...|.+.... .+.+. +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~------------~t~~~~~~~~--~~~~~--------------~~~~ 53 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D------------LTIGVEFGAR--MITID--------------GKQI 53 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--C------------CccceeEEEE--EEEEC--------------CEEE
Confidence 468999999999999999999543211110 0 0012222221 12221 2256
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-HHc---CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~~~---~~~p~ilviNKiD~~ 163 (843)
.++|+||||+..|.......++.+|++++|+|+++..+.+....|.. +.. .+.|++++.||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 89999999999998888899999999999999997554444433332 222 367899999999986
No 159
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.31 E-value=1.3e-11 Score=121.17 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=79.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|+.++|||||+++|+...-... ...+++.+.....+.++ +....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~~ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ----------------YQATIGIDFLSKTMYLE--------------DKTVR 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc----------------CCCceeeeEEEEEEEEC--------------CEEEE
Confidence 3799999999999999999965322111 11122333222233332 23467
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH-cC--CCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~-~~--~~p~ilviNKiD~~ 163 (843)
+++|||||+..|.......++.+|++++|+|+++..+.+....| .... .. +.|+++++||+|+.
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 99999999999998889999999999999999876544443333 2222 23 37899999999985
No 160
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.30 E-value=1.3e-11 Score=122.20 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=75.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|..|+|||||+.+|....- . .++.+ |+......+.+ ++..+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~----------~~~~p-------t~g~~~~~i~~----------------~~~~l~ 47 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L----------ESVVP-------TTGFNSVAIPT----------------QDAIME 47 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c----------ccccc-------cCCcceEEEee----------------CCeEEE
Confidence 78999999999999999954211 0 00111 11111122223 367899
Q ss_pred EEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHH--cCCCceEEEEECCccc
Q 003165 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~--~~~~p~ilviNKiD~~ 163 (843)
++||||+.+|.......++.+|++|+|+|+++...... +..+..+. ..++|+++|+||+|+.
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 99999999999888999999999999999987543222 22223332 2578999999999986
No 161
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.29 E-value=1.5e-11 Score=121.33 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|++|+|||||+++|+...- ...... |+... ...+.+ ++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDDYDP----------------TIEDSYRKQIEI--------------DGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CcccCC----------------chhhhEEEEEEE--------------CCEEEE
Confidence 699999999999999999965321 110000 11000 011112 223578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-----HHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-----~~~~~~~~p~ilviNKiD~~ 163 (843)
++++||||+.+|.......++.+|++++|+|+++.-+.+...-| +.....+.|+++++||+|+.
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 89999999999999888999999999999999874332222222 22223467899999999986
No 162
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.29 E-value=1.8e-11 Score=119.14 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=74.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|+.|+|||||+++|....- ..++.+ |+......+.+. ...++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-----------~~~~~~-------t~~~~~~~~~~~----------------~~~~~ 47 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-----------SEDTIP-------TVGFNMRKVTKG----------------NVTLK 47 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-----------CcCccC-------CCCcceEEEEEC----------------CEEEE
Confidence 78999999999999999943211 111111 111111222232 47899
Q ss_pred EEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHHc----CCCceEEEEECCccc
Q 003165 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
++||||+..|.......++.+|++++|+|+.+.-.. +....+..... .++|+++++||+|+.
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 999999999999999999999999999999863222 22223333322 467999999999976
No 163
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.29 E-value=4.8e-11 Score=118.27 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=76.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|.... ....... .. ...++ ...+ ++....+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~~~~---~~--------~~~~~-----~~~~--------------~~~~~~~ 49 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPENVPR---VL--------PEITI-----PADV--------------TPERVPT 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccCCC---cc--------cceEe-----eeee--------------cCCeEEE
Confidence 68999999999999999996532 1110000 00 01111 1111 1246789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
++|||||+.++...+...++.+|++++|+|+++..+.+.. ..|. .+. ..+.|+++++||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 9999999999888888889999999999999886555542 2332 222 2468999999999986
No 164
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=2.9e-11 Score=126.06 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=82.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccC-eeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERG-ITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rg-iTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..+.|+++|++|+|||||+++|+........ . ...| +|+ +. .+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~--------~------~~~g~i~i--------~~--------------~~ 81 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI--------S------DIKGPITV--------VT--------------GK 81 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcc--------c------cccccEEE--------Ee--------------cC
Confidence 4577999999999999999999764221100 0 1122 121 11 13
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEE-EEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~il-viNKiD~~ 163 (843)
+..++++||||+. ..+..+++.+|++++|+|+.+|...++..++..+...++|.++ |+||+|+.
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 6789999999965 6778888999999999999999999999999988888899655 99999976
No 165
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.28 E-value=2.5e-11 Score=120.27 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|+|+++|++|+|||||+++|+....... ...+.|.......+.+ ++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~----------------~~~~ 48 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA----------------PYPFTTKSLFVGHFDY----------------KYLR 48 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC----------------CCCCcccceeEEEEcc----------------CceE
Confidence 5899999999999999999954321110 0112233222222222 2678
Q ss_pred EEEEeCCCCcccH--------HHHHHHh-hccCcEEEEecCCCcccc---cHHHHHHHHHcC--CCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVCV---QTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~--------~e~~~~l-~~~D~ailVvda~~gv~~---qt~~~l~~~~~~--~~p~ilviNKiD~~ 163 (843)
++||||||+.+.. .....++ ..+|++++|+|+.+.... .....+..+... +.|+++++||+|+.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 9999999985321 1222222 346999999999874321 112333444333 68999999999986
No 166
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.28 E-value=3.3e-11 Score=119.72 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+...-.... .. ..|.+.. ...+.+. +....+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~------------t~~~~~~--~~~~~~~--------------~~~~~~ 51 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--KA------------TIGADFL--TKEVTVD--------------DKLVTL 51 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--CC------------ccceEEE--EEEEEEC--------------CEEEEE
Confidence 6999999999999999999653210000 00 0011111 1112221 235678
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-----HH---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-----~~---~~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|.......++.+|++|+|+|+.+..+.+...-|.. +. ..++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 899999999999888899999999999999987644333222321 11 1268999999999986
No 167
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.28 E-value=1.5e-11 Score=140.88 Aligned_cols=111 Identities=22% Similarity=0.310 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+..... |.|.+.....+.+. +..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~----------------g~~ 264 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIA---------------GTTRDVIEEHINLD----------------GIP 264 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCC---------------CcccccEEEEEEEC----------------CeE
Confidence 58999999999999999999764432222222 33444333444443 678
Q ss_pred EEEEeCCCCcccHHH--------HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++++||||+.++... +...++.+|++++|+|++++...+....|.. ..+.|+++|+||+|+.
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 999999999876532 3346788999999999998876666666655 4578999999999986
No 168
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.27 E-value=5e-11 Score=118.04 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|... ........ .-|.+.... .+.. ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~~~~~------------t~~~~~~~~--~~~~--------------~~~~~~ 52 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMADCPH------------TIGVEFGTR--IIEV--------------NGQKIK 52 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCCCCc------------ccceeEEEE--EEEE--------------CCEEEE
Confidence 58999999999999999999532 11110000 001111111 1112 223578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~~~~p~ilviNKiD~~ 163 (843)
++++||||+..|.......++.+|++|+|+|.++..+.+....|. .+. ..+.|++++.||+|+.
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999998999999999999999998854444433332 221 2456888999999986
No 169
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.27 E-value=2.3e-11 Score=122.78 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-+|+++|+.|+|||||++++++.... .+.+ ..|.+... ..+.+. ++....
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~------------~~~~---t~~~~~~~--~~~~~~-------------~~~~~~ 53 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV------------NTVP---TKGFNTEK--IKVSLG-------------NSKGIT 53 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC------------CcCC---ccccceeE--EEeecc-------------CCCceE
Confidence 36999999999999999999653211 0000 01111111 111111 223678
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++++||||+..|.......++.+|++++|+|+++.-..+.. .++......++|+++++||+|+.
T Consensus 54 l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 54 FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 99999999999988888889999999999999875322221 22233334578999999999976
No 170
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.26 E-value=3e-11 Score=124.06 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=73.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+|+|++|+|||||+++|+...-.... .. +.|+......+.+. +
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-~~---------------~~t~~~~~~~~~~~---------------~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-QL---------------FATLDPTTRRLRLP---------------D 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-cc---------------ceeccceeEEEEec---------------C
Confidence 34679999999999999999999654311110 00 12333322333333 1
Q ss_pred ceEEEEEeCCCCccc-H-------HHHHHHhhccCcEEEEecCCCcccccHHH----HHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDF-S-------SEVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df-~-------~e~~~~l~~~D~ailVvda~~gv~~qt~~----~l~~~~~~~~p~ilviNKiD~~ 163 (843)
...+++|||||+.+. . ..+...+..+|++++|+|+.++....... .++.+...++|+++|+||+|+.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 348999999998532 1 11223467899999999999865444332 2222223467999999999987
No 171
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.26 E-value=7.1e-11 Score=121.07 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee--eEEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+++|+... ... .+. -|+... ...+.+. .++..
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~---------~~~-------~t~~~d~~~~~v~~~-------------~~~~~ 50 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQ---------HYK-------ATIGVDFALKVIEWD-------------PNTVV 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC---------CCC-------CceeEEEEEEEEEEC-------------CCCEE
Confidence 68999999999999999996421 111 000 122211 1112221 13467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-HH-------cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~~-------~~~~p~ilviNKiD~~ 163 (843)
.++||||||+..|.......++.+|++|+|+|.++..+.+....|.. +. ..++|+++|.||+|+.
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 89999999999999888899999999999999987544333333321 11 2467999999999985
No 172
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.25 E-value=2.8e-11 Score=118.98 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+...-... .+...|.+.... .+.+. +....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~~--------------~~~~~~ 51 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFKVK--TLTVD--------------GKKVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEEEE--EEEEC--------------CEEEEE
Confidence 689999999999999999964321110 011112222211 12221 235689
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-----HHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-----~~~~~~~p~ilviNKiD~~ 163 (843)
.++||||+..|.......++.+|++++|+|+++..+.+....|. .+...+.|+++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999999888888999999999999998755444333332 2223567889999999986
No 173
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.25 E-value=3.8e-11 Score=119.43 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|.... .. .+. .|+......+.+. +..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~----------~~~-------~T~~~~~~~~~~~----------------~~~i 45 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FM----------QPI-------PTIGFNVETVEYK----------------NLKF 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CC----------CcC-------CcCceeEEEEEEC----------------CEEE
Confidence 48899999999999999995421 10 111 1222222223333 6889
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHHc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|.......++.+|++++|+|+++.-.. .....+..+.. .+.|+++++||+|+.
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 9999999999988888899999999999999873211 11222233322 246889999999986
No 174
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.25 E-value=4.3e-11 Score=118.73 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=77.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|.+|+|||||++++.... ... .+.+ .-|++.. ...+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~---------~~~~---t~~~~~~--~~~~~~~--------------~~~~ 52 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNP---------SFIS---TIGIDFK--IRTIELD--------------GKKI 52 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCc---------cccc---CccceEE--EEEEEEC--------------CEEE
Confidence 4689999999999999999995421 111 0000 0011111 1122222 2356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++|+|+|++++.+.+...-|. .+. ..+.|++++.||+|+.
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8999999999999988888999999999999998764433322232 222 2457899999999986
No 175
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.25 E-value=3.1e-11 Score=132.94 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=90.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+++|+|.+|+|||||+|+|+....+|....+|+ |.+.-...+..+ ++
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i~----------------G~ 265 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINLN----------------GI 265 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEEC----------------CE
Confidence 35899999999999999999999999988877775 444444455554 89
Q ss_pred EEEEEeCCCCcccHHH--------HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.|+||.|..+-.+. ...++..||.+++|+|++.+...+...++. +...+.|+++++||.|+.
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 9999999997643332 445778999999999999987777766665 557778999999999998
No 176
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=2.4e-11 Score=124.24 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeE-eeeeEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI-KSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|+.|+|||||+++|+... .... . . -|+ ......+.+. +....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~-~--------~-------~t~~~~~~~~~~~~--------------~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPK-Y--------R-------RTVEEMHRKEYEVG--------------GVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcc-C--------C-------CchhhheeEEEEEC--------------CEEEE
Confidence 48999999999999999996532 1110 0 0 011 1111122222 22468
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-----HHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-----~~~~~~~~p~ilviNKiD~~ 163 (843)
++|+||||+.+|......+++.+|++|+|+|+++.-..+....| ......++|+++++||+|+.
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 99999999999988778889999999999999875433322222 22223578999999999986
No 177
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.25 E-value=1.1e-10 Score=116.07 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=77.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+++++... ... +....++.......+.+ ++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------------~~~~ 53 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDT--------------QLFHTIGVEFLNKDLEV--------------DGHF 53 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCc--------------CcCCceeeEEEEEEEEE--------------CCeE
Confidence 35689999999999999999995321 110 00001111111112222 2346
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-----HHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-----~~~---~~~~p~ilviNKiD~~ 163 (843)
..+.|+||||+..|.......++.+|++++|+|.++..+.+...-|. .+. ..++|++++.||+|+.
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 78899999999999988888999999999999988754433333232 111 2457899999999975
No 178
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.25 E-value=2.8e-11 Score=120.04 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... .... + ..|+........+. .+++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~---------~-------~~t~~~~~~~~~~~------------~~~~~~~l 51 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEKK---------Y-------VATLGVEVHPLDFH------------TNRGKIRF 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC---------C-------CCceeeEEEEEEEE------------ECCEEEEE
Confidence 79999999999999999996421 1100 0 01222222222222 12246789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||+.+|.......++.+|++|+|+|++++.+.+....| ..+. ..+.|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 9999999999887777788999999999999986555443333 2222 2268999999999986
No 179
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.25 E-value=5e-11 Score=117.95 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=76.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.+|+++|..|+|||||+++++...-... +. ..++.......+.+. +...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~-----------~~-----~t~~~~~~~~~~~~~--------------~~~~ 51 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES-----------YI-----STIGVDFKIRTIELD--------------GKTI 51 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC-----------CC-----CccceeEEEEEEEEC--------------CEEE
Confidence 46899999999999999999954211000 00 011111111122221 2356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++|+|+|+++.-+.....-|. ... ..+.|++++.||+|+.
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 8899999999999998889999999999999998743332222222 222 2457899999999975
No 180
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.24 E-value=4e-11 Score=117.56 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|.+|+|||||+++|+... ....... |+... ...+.++ +..+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~~--------------~~~~~ 50 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDP----------------TIEDSYRKQVVID--------------GETCL 50 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcCCcCC----------------cchheEEEEEEEC--------------CEEEE
Confidence 69999999999999999996432 1110000 11000 1111221 23567
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH----HcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~----~~~~~p~ilviNKiD~~ 163 (843)
++++||||+.+|.......++.+|++++|+|.++....+....| ... ...+.|+++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 89999999999999999999999999999999864332222211 222 23467999999999986
No 181
>PRK04213 GTP-binding protein; Provisional
Probab=99.24 E-value=5.8e-11 Score=121.58 Aligned_cols=111 Identities=23% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|....- ..+...|.|.... .+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~----------------- 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDW----------------- 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEee-----------------
Confidence 3456899999999999999999943210 1112235555432 2222
Q ss_pred ceEEEEEeCCCCcc-----------cHHHHHH----HhhccCcEEEEecCCCc-----------ccccHHHHHHHHHcCC
Q 003165 97 EYLINLIDSPGHVD-----------FSSEVTA----ALRITDGALVVVDCIEG-----------VCVQTETVLRQALGER 150 (843)
Q Consensus 97 ~~~i~liDTPGh~d-----------f~~e~~~----~l~~~D~ailVvda~~g-----------v~~qt~~~l~~~~~~~ 150 (843)
+ .+++|||||+.+ |...+.. ++..+|++++|+|+... ...++..++..+...+
T Consensus 52 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (201)
T PRK04213 52 G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG 130 (201)
T ss_pred c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC
Confidence 1 589999999532 2222222 34567899999998652 2234566677776778
Q ss_pred CceEEEEECCccc
Q 003165 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNKiD~~ 163 (843)
+|+++++||+|+.
T Consensus 131 ~p~iiv~NK~Dl~ 143 (201)
T PRK04213 131 IPPIVAVNKMDKI 143 (201)
T ss_pred CCeEEEEECcccc
Confidence 9999999999986
No 182
>PTZ00369 Ras-like protein; Provisional
Probab=99.24 E-value=6e-11 Score=120.35 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||+++++...- .. .+.+. -|.+.. ..+.+ ++..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~---------~~~~t---~~~~~~---~~~~~--------------~~~~~ 53 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--ID---------EYDPT---IEDSYR---KQCVI--------------DEETC 53 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--Cc---------CcCCc---hhhEEE---EEEEE--------------CCEEE
Confidence 35899999999999999999964321 10 00000 000110 11111 22367
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HH----HcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~----~~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|+++..+.+...-|. .. ...++|+++++||+|+.
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8999999999999999999999999999999998754322222222 22 23367899999999975
No 183
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.24 E-value=3.9e-11 Score=118.41 Aligned_cols=113 Identities=19% Similarity=0.184 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+...-.- . ....++.......+.+ ++....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~---------------~~~t~~~~~~~~~~~~--------------~~~~~~l 51 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-K---------------YLPTIGIDYGVKKVSV--------------RNKEVRV 51 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-C---------------CCCccceeEEEEEEEE--------------CCeEEEE
Confidence 69999999999999999996432100 0 0000111111111222 1236789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HH----Hc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~----~~----~~~p~ilviNKiD~~ 163 (843)
+|+||||+.+|.......++.+|++|+|+|+++..+.+...-|. .+ .. .+.|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99999999999988888899999999999998754333332232 11 11 357888999999975
No 184
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.24 E-value=5.2e-11 Score=118.43 Aligned_cols=110 Identities=17% Similarity=0.126 Sum_probs=74.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+.+|.... .. .+.+ |+......+.+. +.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~~----------~~~~-------t~g~~~~~~~~~----------------~~ 53 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--SV----------TTIP-------TVGFNVETVTYK----------------NV 53 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--Cc----------cccC-------CcccceEEEEEC----------------CE
Confidence 3589999999999999999994311 10 0111 111111122222 67
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHHH----cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
.++++||||+..|.......++.+|++|+|+|+++..... ....|.... ..+.|++++.||+|+.
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 8999999999999888888899999999999998743221 122232222 2357899999999986
No 185
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.24 E-value=9.5e-11 Score=114.88 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...-.... .. .++.......+.+. +....+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~--------------~~~~~~~~~~~~~~--------------~~~~~~ 51 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ES--------------TTQASFFQKTVNIG--------------GKRIDL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--CC--------------ccceeEEEEEEEEC--------------CEEEEE
Confidence 7999999999999999999653221100 00 01111111111111 125679
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH----HHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~----~~~~~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++++|+|+.++-..+...-|. .....++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999998888888889999999999998865544333332 2223367899999999986
No 186
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.23 E-value=4.7e-11 Score=116.05 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++++|||||+++|+...-.... .+..+.......+... .....+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------------KSTIGVDFKSKTIEID--------------GKTVKL 51 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------------CCceeeeeEEEEEEEC--------------CEEEEE
Confidence 6999999999999999999543221110 0001111111122221 235789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++++|+|+.+.-..+....| ..... .+.|.++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 9999999999999999999999999999999874333332223 23333 347899999999985
No 187
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.23 E-value=4.3e-11 Score=117.80 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+...-... .....|.+.....+ .+ ++....+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~v--~~--------------~~~~~~~ 52 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQTV--NL--------------DDTTVKF 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEE--EE--------------CCEEEEE
Confidence 799999999999999999965321110 01111212211111 22 1236789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc---CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
++|||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+.. .+.|+++++||+|+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999988888889999999999999865332222 22232222 346889999999976
No 188
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.23 E-value=7.6e-11 Score=115.91 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||+++|+... ......+. ..+. . .....+ ++....+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~--~~~~----------~---~~~~~~--------------~~~~~~~ 50 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPT--KADS----------Y---RKKVVL--------------DGEDVQL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCc--chhh----------E---EEEEEE--------------CCEEEEE
Confidence 79999999999999999997432 11100110 0000 0 001111 2235789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-----ccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-----VQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-----~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++||||+.+|......+++.+|++++|+|..+.-+ .....+++.....++|+++++||+|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 999999999999999999999999999999876422 111222222223578999999999986
No 189
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=7.9e-11 Score=123.71 Aligned_cols=125 Identities=23% Similarity=0.274 Sum_probs=81.3
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccc
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
++|+++..-.-+.++|.|.|++|+|||||+.++....-.+.. .-++ |-.....++.+.
T Consensus 156 ~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-----YPFT-----------TK~i~vGhfe~~------ 213 (346)
T COG1084 156 DHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-----YPFT-----------TKGIHVGHFERG------ 213 (346)
T ss_pred HHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCC-----CCcc-----------ccceeEeeeecC------
Confidence 344444444447899999999999999999999443322211 1111 222223445443
Q ss_pred ccccCcCCCCceEEEEEeCCCCcc--------cHHHHHHHhhcc-CcEEEEecCCC--cccccHH-HHHHHHH-cCCCce
Q 003165 87 KSYKGERNGNEYLINLIDSPGHVD--------FSSEVTAALRIT-DGALVVVDCIE--GVCVQTE-TVLRQAL-GERIRP 153 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~d--------f~~e~~~~l~~~-D~ailVvda~~--gv~~qt~-~~l~~~~-~~~~p~ 153 (843)
...|++|||||.-| ...+.+.||+.. +++++++|.++ |...... .+|+.+. ....|+
T Consensus 214 ----------~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~ 283 (346)
T COG1084 214 ----------YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPI 283 (346)
T ss_pred ----------CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCe
Confidence 66999999999765 456677888754 66779999997 4433322 3444443 345678
Q ss_pred EEEEECCccc
Q 003165 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNKiD~~ 163 (843)
++|+||+|..
T Consensus 284 v~V~nK~D~~ 293 (346)
T COG1084 284 VVVINKIDIA 293 (346)
T ss_pred EEEEeccccc
Confidence 8999999966
No 190
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.22 E-value=8.3e-11 Score=115.84 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=72.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+.+|.. +.. ..+.+ |+......+.+. ...+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~----------~~~~p-------t~g~~~~~~~~~----------------~~~~ 46 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEI----------VTTIP-------TIGFNVETVEYK----------------NISF 46 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCC----------cccCC-------CCCcceEEEEEC----------------CEEE
Confidence 589999999999999999942 111 11111 111111112222 6789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHHc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+++--.. +....|..... .+.|+++++||+|+.
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 9999999999988888889999999999999863211 11222332222 347889999999986
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.22 E-value=6.3e-11 Score=114.82 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=79.4
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEE
Q 003165 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||+++|......... ...+.|.........+. ....++++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEE
Confidence 5899999999999999654322111 11223433333333332 25689999
Q ss_pred eCCCCcccH-------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 104 DSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~-------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
||||+.++. ......++.+|++++|+|+..+.......+.......+.|.++++||+|+.
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 999988765 345568899999999999999877777665666677889999999999976
No 192
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=5.2e-11 Score=119.55 Aligned_cols=113 Identities=22% Similarity=0.267 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++++...-. ... .. . +.......+.+. +.++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~-~~------t---------~~~~~~~~~~~~--------------~~~~~ 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESY-YP------T---------IENTFSKIIRYK--------------GQDYH 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-ccc-Cc------c---------hhhhEEEEEEEC--------------CEEEE
Confidence 68999999999999999999743211 000 00 0 000000111121 22567
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHH-HHHHH----cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~-l~~~~----~~~~p~ilviNKiD~~ 163 (843)
++++||||+.+|......++..+|++++|+|++++...+.... +.... ..+.|+++++||+|+.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 8999999999999888889999999999999998655444322 23222 3467999999999976
No 193
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.22 E-value=2.9e-11 Score=116.39 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++|.... . .+ .-|+ ...|. .
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~-----------~--~~-------~~t~-----~~~~~----------------~-- 37 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEE-----------I--LY-------KKTQ-----AVEYN----------------D-- 37 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCc-----------c--cc-------ccce-----eEEEc----------------C--
Confidence 379999999999999999994221 0 00 0122 22332 2
Q ss_pred EEEEeCCCCc----ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~----df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+|||||.. .+...+..+++.+|++++|+|++++.+.+....+.. .+.|.++++||+|+.
T Consensus 38 -~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 -GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred -eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999973 344445556899999999999999887766543332 235899999999986
No 194
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.22 E-value=5.3e-11 Score=117.69 Aligned_cols=112 Identities=18% Similarity=0.295 Sum_probs=72.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... .. + ++.+.- + +... ..+.+ +++...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~----~-----~~~~t~---~-~~~~--~~~~~--------------~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI----G-----EYDPNL---E-SLYS--RQVTI--------------DGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc----c-----ccCCCh---H-Hhce--EEEEE--------------CCEEEEE
Confidence 58999999999999999996421 11 1 000000 0 1111 11111 2235678
Q ss_pred EEEeCCCCcc-cHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH-----cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~d-f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~-----~~~~p~ilviNKiD~~ 163 (843)
+||||||+.. +.......++.+|++|+|+|+++..+.+....|. .+. ..+.|+++|+||+|+.
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999985 4566788899999999999999865444332222 121 2368999999999975
No 195
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.22 E-value=9.3e-11 Score=115.77 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++++. +........ |+... ...+.+ ++..+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 50 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYDP----------------TIEDSYRKQVEV--------------DGQQCM 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcccCC----------------cchheEEEEEEE--------------CCEEEE
Confidence 699999999999999999963 222111011 11111 111222 123577
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHH----HcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~----~~~~~p~ilviNKiD~~ 163 (843)
++|+||||+..|.......++.+|++++|+|.++..+.+.. ..+... ...+.|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 89999999999999999999999999999998765433322 222222 23568999999999986
No 196
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.22 E-value=7.8e-11 Score=120.61 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-|+++|..|+|||||+.++.... ... +. ..|+.... ..+.+ +++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~--------------~~--~~Ti~~~~~~~~i~~--------------~~~~v 49 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE--------------AC--KSGVGVDFKIKTVEL--------------RGKKI 49 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC--------------cC--CCcceeEEEEEEEEE--------------CCEEE
Confidence 48899999999999999995421 111 00 01222111 12222 22368
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH----cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
.++||||+|+..|.......++.+|++|+|+|+++.-+.+...-|.... ..+.|+++|.||+|+.
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 8999999999999998999999999999999999865555544443222 2457899999999975
No 197
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.22 E-value=8.9e-11 Score=116.94 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=76.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|....- . .. ....|+++ ..+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~--~----------~~---~~t~g~~~----~~i~~~---------------- 56 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI--S----------HI---TPTQGFNI----KTVQSD---------------- 56 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC--c----------cc---CCCCCcce----EEEEEC----------------
Confidence 3456799999999999999999943210 0 00 01112222 122332
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHH----HHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~----~~~~~~p~ilviNKiD~~ 163 (843)
+..++++||||+..|...+...++.+|++++|+|+.+.... .....+.. ....++|+++++||+|+.
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 67899999999999988888899999999999999863211 11222222 233568999999999986
No 198
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.21 E-value=6.2e-11 Score=117.67 Aligned_cols=111 Identities=22% Similarity=0.281 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|.+|+|||||++++.... ... .+.+ |+... ...+.+. +....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~~--------------~~~~~ 50 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIE---------SYDP-------TIEDSYRKQVEID--------------GRQCD 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc---------ccCC-------cchheEEEEEEEC--------------CEEEE
Confidence 69999999999999999995322 111 0000 11111 1112221 23578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-----HHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-----~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+++|||||+.+|.......++.+|++++|+|.++.-..+... +++.....+.|+++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 899999999999999999999999999999998754333322 2222224578999999999986
No 199
>PLN03118 Rab family protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=120.61 Aligned_cols=114 Identities=19% Similarity=0.254 Sum_probs=77.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+|+|+.|+|||||+++|+... ... .. ...+.......+.++ +..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--~~-------------~t~~~~~~~~~~~~~--------------~~~~ 62 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--LA-------------PTIGVDFKIKQLTVG--------------GKRL 62 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--cC-------------CCceeEEEEEEEEEC--------------CEEE
Confidence 4689999999999999999996532 111 00 001111111122222 2357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH-----cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~-----~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|.......++.+|++|+|+|+++..+.+.. ..|.... ..+.|.++|+||+|+.
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 899999999999999889999999999999999875444433 2343222 2356889999999986
No 200
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=6.7e-11 Score=117.21 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=75.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-+.|.++|+.|+|||+|..+|.+... ..+ ++ ++.. .+.+.+ .+.+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~------~~T--~t-----------S~e~-n~~~~~-------------~~~~~~ 49 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT------VPT--VT-----------SMEN-NIAYNV-------------NNSKGK 49 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B----------------SSE-EEECCG-------------SSTCGT
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc------CCe--ec-----------cccC-CceEEe-------------ecCCCC
Confidence 35799999999999999999966411 110 00 1111 111111 122356
Q ss_pred EEEEEeCCCCcccHHHHHHH---hhccCcEEEEecCCCcccccHHHH-------HHHHH--cCCCceEEEEECCcccccc
Q 003165 99 LINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCVQTETV-------LRQAL--GERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~---l~~~D~ailVvda~~gv~~qt~~~-------l~~~~--~~~~p~ilviNKiD~~~~~ 166 (843)
.+.+||+|||..+....... +..+-++|+|||++. ...+-+.+ +.... ..++|++|++||.|+.
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~--- 125 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF--- 125 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST---
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc---
Confidence 78999999999998887776 889999999999974 22222222 22222 3456788899999998
Q ss_pred ccCC-HHHHHHHHHHHHHHh
Q 003165 167 LQVD-GEEAYQTFSRVVENA 185 (843)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~ 185 (843)
.+- +..+...+++-++.+
T Consensus 126 -~A~~~~~Ik~~LE~Ei~~l 144 (181)
T PF09439_consen 126 -TAKPPKKIKKLLEKEIDKL 144 (181)
T ss_dssp -T---HHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHHHH
Confidence 553 445555555555544
No 201
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.20 E-value=6.8e-11 Score=116.09 Aligned_cols=109 Identities=25% Similarity=0.244 Sum_probs=73.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|..|+|||||+++|....- .. ..+ ..|.++ ..+.+. ..+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~--~~----------~~~---t~~~~~----~~~~~~---------------~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL--VT----------TIP---TVGFNV----EMLQLE---------------KHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc--cc----------ccC---ccCcce----EEEEeC---------------CceEE
Confidence 378999999999999999954321 00 000 011111 112221 25789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHH----cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+.+...... ...+.... ..+.|+++++||+|+.
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 999999999998888888999999999999987542111 12222222 2578999999999986
No 202
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.20 E-value=7.3e-11 Score=130.68 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=75.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+... .+.....+ .|.+.....+.+. .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~---------------tT~d~~~~~i~~~---------------~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF---------------ATLDPTTRRLDLP---------------DG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc---------------cccCCEEEEEEeC---------------CC
Confidence 45689999999999999999996533 22111122 2433333334442 24
Q ss_pred eEEEEEeCCCCc-ccH-------HHHHHHhhccCcEEEEecCCCcccccHH----HHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHV-DFS-------SEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~-df~-------~e~~~~l~~~D~ailVvda~~gv~~qt~----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.|+||||.. +.. ..+...++.||++++|+|+++....... .++..+...+.|+++|+||+|+.
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 689999999972 211 1234457889999999999886543322 23333333468999999999986
No 203
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.20 E-value=8.6e-11 Score=116.32 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|.... ... .+.+ .-|++... ..+.. ++....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~---------~~~~---t~~~~~~~--~~~~~--------------~~~~~~ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTS---------AFVS---TVGIDFKV--KTVFR--------------NDKRVK 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---------CCCC---ceeeEEEE--EEEEE--------------CCEEEE
Confidence 479999999999999999995421 100 0000 00111111 11111 123578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---~~~p~ilviNKiD~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|+++.-..+...-| ..+.. ...|+++++||+|+.
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 99999999999998888999999999999999864333222222 22222 356889999999986
No 204
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.20 E-value=9.2e-11 Score=120.05 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=76.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+++|+... ... .+.+ ..|+.. ....+.+. +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~---------~~~~---t~~~~~--~~~~~~~~--------------~~~ 54 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG---------SYIT---TIGVDF--KIRTVEIN--------------GER 54 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC---------CcCc---ccccee--EEEEEEEC--------------CEE
Confidence 45789999999999999999995421 100 0000 001111 11122221 235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
..++|+||||+..|.......++.+|++++|+|+++.-+.+...-| .... ....|+++|+||+|+.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 6789999999999998889999999999999999875443332223 2222 2346889999999986
No 205
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.20 E-value=8.8e-11 Score=115.99 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|.+++|||||+++|+...-... + ...++.......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------~-----~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD-----------S-----KSTIGVEFATRSIQID--------------GKTI 52 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------C-----CCccceEEEEEEEEEC--------------CEEE
Confidence 35899999999999999999954221100 0 0111111112222222 2346
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.++++||||+..|.......++.+|++|+|+|+++.-..+...-| ..+. ..+.|+++++||.|+.
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 789999999999988888899999999999999874433332222 2222 2357888999999976
No 206
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.19 E-value=8.7e-11 Score=115.56 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|.+|+|||||+++++... .... +.+ |+... ...+.. ++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEK---------YDP-------TIEDSYRKQIEV--------------DGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc---------cCC-------chhhhEEEEEEE--------------CCEEE
Confidence 479999999999999999996432 1110 000 11000 011112 12356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHH-HHHHH----cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~-l~~~~----~~~~p~ilviNKiD~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|.++.-+...... +..+. ..++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 78899999999998888888999999999999987433222222 22222 2367899999999975
No 207
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=2e-10 Score=113.75 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=84.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcc-cccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...-||++|++|+|||||+|+|+...+... ...+ |.|..... +.+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktP---------------GrTq~iNf--f~~~---------------- 69 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTP---------------GRTQLINF--FEVD---------------- 69 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCC---------------CccceeEE--EEec----------------
Confidence 456899999999999999999966443221 1113 45654432 3332
Q ss_pred ceEEEEEeCCCCc----------ccHHHHHHHhh---ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~----------df~~e~~~~l~---~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.|||.||+. .+...+..++. ...+++++||+.+++....++++..+...++|+++++||+|+.
T Consensus 70 -~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi 148 (200)
T COG0218 70 -DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKL 148 (200)
T ss_pred -CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 237899999973 23444555553 3678999999999999999999999999999999999999977
No 208
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.19 E-value=2e-10 Score=115.67 Aligned_cols=111 Identities=21% Similarity=0.166 Sum_probs=75.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|..++|||||+.+|.. +.... +.+ |+......+.+. +
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~----------~~p-------t~g~~~~~~~~~----------------~ 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKL--GEIVT----------TIP-------TIGFNVETVEYK----------------N 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCcc----------ccC-------CcceeEEEEEEC----------------C
Confidence 346899999999999999999942 11111 111 111111223332 6
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
..++++||||+..|.......++.+|++|+|+|+++.-..+. ...+..... .+.|++|++||+|+.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 789999999999998888888999999999999987432211 112222221 367899999999987
No 209
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.19 E-value=1.4e-10 Score=114.89 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+++++... .... +.+ |+.... ..+.+ +.+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~ 49 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRES---------YIP-------TIEDTYRQVISC--------------SKNIC 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCC---------cCC-------cchheEEEEEEE--------------CCEEE
Confidence 369999999999999999996422 1110 000 110000 01111 12357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc------CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~------~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|......+++.+|++|+|+|.++..+.... ..+..+.. .++|++++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 50 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 899999999999998888889999999999999876544332 22222222 467999999999986
No 210
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.19 E-value=1.7e-10 Score=115.58 Aligned_cols=110 Identities=19% Similarity=0.130 Sum_probs=75.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||+.+|.. +.. .++.+ |+......+.+. ..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~~----------~~~~~-------t~~~~~~~~~~~----------------~~ 57 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GES----------VTTIP-------TIGFNVETVTYK----------------NI 57 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCC----------CCcCC-------ccccceEEEEEC----------------CE
Confidence 35799999999999999999942 111 11111 222111222232 67
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-ccHHHHHHHHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~qt~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
.+.++||||+..|.......++.+|++|+|+|+++.-. ......|..... .+.|++|+.||+|+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 89999999999999888888999999999999986321 122333333322 357899999999986
No 211
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.18 E-value=2.7e-10 Score=115.91 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...++|+++|++|+|||||+++|+.... +.. + ....|.|...... .+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~-------~------~~~~~~t~~~~~~--~~----------------- 68 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-LAR-------T------SKTPGRTQLINFF--EV----------------- 68 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc-------c------cCCCCceeEEEEE--ec-----------------
Confidence 4678999999999999999999965321 000 0 0011233332211 11
Q ss_pred ceEEEEEeCCCCc----------ccHHHHHHHhhc---cCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHV----------DFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~----------df~~e~~~~l~~---~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.||||||+. .|...+...++. ++++++|+|+..+.......+++.+...++|+++++||+|+.
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 3578999999963 233334444444 467889999988777666666677777789999999999975
No 212
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.18 E-value=1e-10 Score=116.65 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... ... .+. -|+........+. .++....+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~---------~~~-------~t~~~~~~~~~~~------------~~~~~~~l 51 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDK---------NYK-------ATIGVDFEMERFE------------ILGVPFSL 51 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------CCC-------CceeeEEEEEEEE------------ECCEEEEE
Confidence 58999999999999999996421 111 000 1222222111111 12235789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHcC----CCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~~----~~p~ilviNKiD~~ 163 (843)
+|+||||..+|.......++.+|++++|+|+.+.-......-|. ...+. ..|+++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 99999999999988889999999999999997743333322232 22222 23577899999975
No 213
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.18 E-value=9.3e-11 Score=119.86 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=71.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+|+|..|+|||||+++++... ... .+.+ .++.......+.++ ++.+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~---------~~~p-----t~~~~~~~~~i~~~--------------~~~~~l 51 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE---------EYIP-----TEHRRLYRPAVVLS--------------GRVYDL 51 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc---------ccCC-----ccccccceeEEEEC--------------CEEEEE
Confidence 69999999999999999995421 110 0000 00111101112222 235788
Q ss_pred EEEeCCCCcccHH----H----HHHHhhccCcEEEEecCCCcccccHHHHH-HHHH------cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSS----E----VTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~----e----~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~------~~~~p~ilviNKiD~~ 163 (843)
+||||||+.+|.. + ...+++.+|++|+|+|+++.-+.+....| ..+. ..++|++++.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 9999999876521 1 34568899999999999876444333322 2222 2467999999999986
No 214
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.18 E-value=2.5e-10 Score=116.61 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=79.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+||+++|++|+|||||+|+|+......... ...|.|.........+. +..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~--------------~~~~~T~~~~~~~~~~~----------------~~~ 50 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL--------------SASSVTKTCQKESAVWD----------------GRR 50 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc--------------CCCCcccccceeeEEEC----------------CeE
Confidence 589999999999999999997654432221 12244555444444454 789
Q ss_pred EEEEeCCCCcccH-------HHHHHHh----hccCcEEEEecCCCcccccHHHHHHHHHcC-C----CceEEEEECCccc
Q 003165 100 INLIDSPGHVDFS-------SEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~-------~e~~~~l----~~~D~ailVvda~~gv~~qt~~~l~~~~~~-~----~p~ilviNKiD~~ 163 (843)
+++|||||..++. .++...+ ...|++++|+|+.. .......+++.+.+. + .+.++++|+.|..
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 9999999987752 2333333 45799999999987 777777777665432 2 4678899999976
No 215
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.18 E-value=1.8e-10 Score=113.59 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+.+|......... +.. .|+.... ..+.+. ++...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~--------------~~~--~t~~~~~~~~~~~~~-------------~~~~~ 52 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK--------------NYL--MTTGCDFVVKEVPVD-------------TDNTV 52 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--------------cCC--CceEEEEEEEEEEeC-------------CCCEE
Confidence 6899999999999999999653211111 000 0221111 111111 23467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc--CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
.+.++||||+..|.......++.+|++++|+|.++........-| ..... .+.|+++++||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 53 ELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 899999999999988888999999999999999875333222223 22222 358999999999985
No 216
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.17 E-value=1.1e-10 Score=118.45 Aligned_cols=111 Identities=16% Similarity=0.271 Sum_probs=74.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++|.... ....... |+... ...+.+ ++....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDP----------------TIEDSYRKQVVV--------------DGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCC----------------chHhhEEEEEEE--------------CCEEEE
Confidence 48999999999999999996421 1110011 11000 011112 123567
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH------cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~------~~~~p~ilviNKiD~~ 163 (843)
++||||||+.+|.......++.+|++|+|+|.++..+.....-| ..+. ..+.|++++.||+|+.
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 89999999999999888999999999999999875443332222 2221 1457889999999985
No 217
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.17 E-value=1.4e-10 Score=117.91 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeE--EEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI--SLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||++++....-.... +. .|+..... .+.+ ++...
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~----------~~-------~t~~~~~~~~~~~~--------------~~~~~ 50 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN----------FI-------ATVGIDFRNKVVTV--------------DGVKV 50 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC----------cC-------CcccceeEEEEEEE--------------CCEEE
Confidence 6899999999999999999543211110 00 01111111 1122 12357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.++||||||+..|.......++.+|++|+|+|++..-+.+....| ..+. ..++|+++++||+|+.
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 899999999999988888889999999999999874332222222 2222 3467899999999975
No 218
>PLN03110 Rab GTPase; Provisional
Probab=99.16 E-value=1.8e-10 Score=119.51 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.. ++. ..+.+......+.+ ++.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-----------~~~-----~t~g~~~~~~~v~~--------------~~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL-----------ESK-----STIGVEFATRTLQV--------------EGK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC-----------CCC-----CceeEEEEEEEEEE--------------CCE
Confidence 356799999999999999999995422110 000 11111111112222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++||||||+..|.......++.+|++|+|+|..+....+...-| ..+. ..++|++++.||+|+.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 57899999999999999888999999999999999875443333333 2222 2468899999999975
No 219
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.16 E-value=1.4e-10 Score=115.78 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+.+++.. ..... +. -|+.... ..+.+ ++...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~--~f~~~---------~~-------~t~~~~~~~~~~~--------------~~~~~ 50 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISH--SFPDY---------HD-------PTIEDAYKQQARI--------------DNEPA 50 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhC--CCCCC---------cC-------CcccceEEEEEEE--------------CCEEE
Confidence 47999999999999999999642 11110 00 0111100 01112 22356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-----HHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-----~~~~~~~~p~ilviNKiD~~ 163 (843)
.++|+||||..+|..-...+++.+|++|+|+|.++..+.+...-| +.....++|+++|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 899999999999998888999999999999999987665554322 11123468999999999975
No 220
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.16 E-value=2.3e-10 Score=115.66 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=75.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeE-EEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++|+... ... ++. -|+..... .+... +++...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~--~~~---------~~~-------~t~~~~~~~~i~~~-------------~~~~~~ 50 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPE---------EYV-------PTVFENYVTNIQGP-------------NGKIIE 50 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc--CCC---------CCC-------CeeeeeeEEEEEec-------------CCcEEE
Confidence 79999999999999999996422 111 000 02111111 11111 124568
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH---cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~---~~~~p~ilviNKiD~~ 163 (843)
+.|+||||+.+|.......++.+|++|+|+|+++..+.+.. ..|.... ..++|++++.||.|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 99999999999988777888999999999999875444333 2232221 2468999999999986
No 221
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.15 E-value=1.6e-10 Score=113.10 Aligned_cols=112 Identities=24% Similarity=0.315 Sum_probs=74.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+|+|+.|+|||||+++|+... .... +.+. +-......+.+ ++..+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~---------~~~~------~~~~~~~~~~~--------------~~~~~~~ 49 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEE---------YDPT------IEDSYRKTIVV--------------DGETYTL 49 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcC---------cCCC------hhHeEEEEEEE--------------CCEEEEE
Confidence 58999999999999999996533 1110 0000 00011111112 1235789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHH----cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+++||||+.++.......++.+|++++|+|.++.-.. +....+.... ..+.|+++++||+|+.
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 9999999999999999999999999999998764321 1222333322 2468899999999987
No 222
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.15 E-value=2e-10 Score=119.40 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=78.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+.+++... ... +. .-|+........+. .+++.
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~--------------~~--~~tig~~~~~~~~~------------~~~~~ 61 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK--------------KY--EPTIGVEVHPLDFF------------TNCGK 61 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--CCC--------------cc--CCccceeEEEEEEE------------ECCeE
Confidence 45689999999999999999985421 111 00 01221111122221 01235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-H--HcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A--LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~--~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+|..-....++.+|++|+|+|.++..+.+...-|.. + ...+.|+++|.||+|+.
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 789999999999998777788899999999999998655554433422 1 13568999999999975
No 223
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.15 E-value=2.8e-10 Score=114.16 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=77.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||++++.... .... +. ..+........+.+....+ ......+...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~--~~~~---------~~-----~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 63 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK--FNPK---------FI-----TTVGIDFREKRVVYNSSGP----GGTLGRGQRI 63 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCcc---------CC-----CccceEEEEEEEEEcCccc----cccccCCCEE
Confidence 4689999999999999999995421 1100 00 0011111111122210000 0001123467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~----~~~p~ilviNKiD~~ 163 (843)
.+.||||||+..|.......++.+|++++|+|+++.-+.+...-|. .... .+.|+++|.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 8999999999999988899999999999999998744333332232 2222 356888999999986
No 224
>PRK11058 GTPase HflX; Provisional
Probab=99.14 E-value=2.3e-10 Score=129.67 Aligned_cols=114 Identities=23% Similarity=0.196 Sum_probs=75.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+..|+++|.+|+|||||+++|....-.. . | ..+.|++.....+.+. ...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v-~---------~------~~~tTld~~~~~i~l~---------------~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA-A---------D------QLFATLDPTLRRIDVA---------------DVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee-c---------c------CCCCCcCCceEEEEeC---------------CCC
Confidence 4579999999999999999995422111 1 1 1123444433344443 133
Q ss_pred EEEEEeCCCCccc--------HHHHHHHhhccCcEEEEecCCCcccccHH----HHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~qt~----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.|+||||.... ...+...++.+|++++|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 7889999998442 12244567889999999999986433322 33444444578999999999986
No 225
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.14 E-value=1.9e-10 Score=117.57 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=77.1
Q ss_pred EeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEEe
Q 003165 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLID 104 (843)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 104 (843)
+|..++|||||+.+++. +.... +...|+........+. .+++...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~~----------------~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFEK----------------KYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCCC----------------CCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 58999999999999953 11111 0112333222222222 123467899999
Q ss_pred CCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-HHc--CCCceEEEEECCccc
Q 003165 105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 105 TPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~~~--~~~p~ilviNKiD~~ 163 (843)
|||+.+|......+++.+|++|+|+|+++..+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999989999999999999999998766655555543 322 468999999999975
No 226
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=4.7e-10 Score=113.14 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=73.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+.++.. +... ++.+ |+......+.+. +..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~--~~~~----------~~~~-------T~~~~~~~~~~~----------------~~~ 62 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL--GEVV----------TTIP-------TIGFNVETVEYK----------------NLK 62 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcc----------ccCC-------ccccceEEEEEC----------------CEE
Confidence 5799999999999999999942 1111 1101 111111122332 688
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHHc----CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
++++||||+..|.......++.+|++|+|+|+++--.. .....+..... .+.|++|++||.|+.
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 99999999999998888899999999999999762111 11222332222 357889999999986
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.13 E-value=5.6e-10 Score=115.70 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++++... .. ++. -|+........+. .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~--f~----------~~~-------~Tig~~~~~~~~~----------------~~~l 46 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR--FK----------DTV-------STVGGAFYLKQWG----------------PYNI 46 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CC----------CCC-------CccceEEEEEEee----------------EEEE
Confidence 68999999999999999995421 10 000 1232222222232 5789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHH-HHHHH---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~-l~~~~---~~~~p~ilviNKiD~~ 163 (843)
+||||||+..|.......++.+|++|+|+|+++.-+.+.... |..+. ..+.|+|+|.||+|+.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999888889999999999999987533333322 22222 2457889999999986
No 228
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.13 E-value=3.5e-10 Score=111.45 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEe-eeeEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|.+|+|||||+.+++. +........ |+. .....+.. ++....
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 50 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIEKYDP----------------TIEDFYRKEIEV--------------DSSPSV 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCCCCCC----------------chhheEEEEEEE--------------CCEEEE
Confidence 799999999999999999854 222111000 110 00011111 123567
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH----cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~----~~~~p~ilviNKiD~~ 163 (843)
++|+||||+..|.......++.+|++++|+|.++..+.+...-| ..+. ..++|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88999999999998888889999999999999875432222222 2222 2468999999999975
No 229
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.9e-11 Score=131.47 Aligned_cols=131 Identities=32% Similarity=0.386 Sum_probs=104.3
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccC------------C---ceEeecCcccccccCeeEeeeeEEEE
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA------------G---DVRMTDTRADEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~------------g---~~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (843)
......+||+++||.++||||++. +.+|.++.+.. | ..+.+|....|++||+||..+...+.
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 334456799999999999999997 66676655321 1 14789999999999998765443332
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHcCCC
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 151 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~~~~ 151 (843)
...+.+++||.|||.||...+..+.+++|+|++.|.+.-| ...||+++...+...++
T Consensus 79 ----------------t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 ----------------TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred ----------------ceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 2478999999999999999999999999999999998332 36899999888888876
Q ss_pred -ceEEEEECCccc
Q 003165 152 -RPVLTVNKMDRC 163 (843)
Q Consensus 152 -p~ilviNKiD~~ 163 (843)
++++-+||||..
T Consensus 143 ~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 143 KQLIVGVNKMDST 155 (391)
T ss_pred eeeeEEeeccccc
Confidence 577899999965
No 230
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.13 E-value=3.6e-10 Score=114.88 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...-.... +. -|+........+. .++....+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~----------~~-------~t~~~~~~~~~~~------------~~~~~~~l 52 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP----------YQ-------NTIGAAFVAKRMV------------VGERVVTL 52 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC----------cc-------cceeeEEEEEEEE------------ECCEEEEE
Confidence 6999999999999999999653211000 00 0222111111111 12235678
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
++|||||..+|.......++.+|++++|+|+++..+.+....| ..+. ..+.|+++|+||+|+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 8999999998887777788899999999999875333322222 2222 2367899999999975
No 231
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.13 E-value=3.5e-10 Score=117.28 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=73.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee--eEEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+++|+... ... .+. -|+... ...+.+. +....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~~---------~~~-------~T~~~d~~~~~i~~~-------------~~~~~ 50 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FGK---------SYK-------QTIGLDFFSKRVTLP-------------GNLNV 50 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC---------CCC-------CceeEEEEEEEEEeC-------------CCCEE
Confidence 68999999999999999995421 100 010 122211 1122221 11357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc------CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~------~~~p~ilviNKiD~~ 163 (843)
.++|+||||+..|.......++.+|++|+|+|+++.-+.+...-| ..+.+ .+.|+++|.||+|+.
T Consensus 51 ~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 51 TLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 899999999999988888899999999999999875333322223 22221 234677899999985
No 232
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.12 E-value=1.7e-10 Score=115.01 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|+.|+|||||+.++.... ....... |+... ...+.+ ++..+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 49 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDA--FPEEYVP----------------TVFDHYAVSVTV--------------GGKQYL 49 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------ceeeeeEEEEEE--------------CCEEEE
Confidence 69999999999999999996532 1110000 11100 011112 223577
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHH-HH--HcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QA--LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~-~~--~~~~~p~ilviNKiD~~ 163 (843)
+++|||||+.+|.......++.+|++++|+|..+.-..+... .|. .+ ...+.|+++++||+|+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 899999999999887777889999999999998754433321 221 11 14578999999999976
No 233
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=2.5e-10 Score=109.26 Aligned_cols=110 Identities=24% Similarity=0.257 Sum_probs=77.2
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEE
Q 003165 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
|+|+.|+|||||+++|......... +..|. .......+. .......++++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~-~~~~~~~~~------------~~~~~~~~~l~ 50 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTI-IDFYSKTIE------------VDGKKVKLQIW 50 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----------------cccch-hheeeEEEE------------ECCEEEEEEEE
Confidence 5899999999999999654431000 00111 111122221 01236789999
Q ss_pred eCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-----HHHHcCCCceEEEEECCccc
Q 003165 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-----~~~~~~~~p~ilviNKiD~~ 163 (843)
||||+.++.......++.+|++++|+|+..+........| ......+.|.++++||+|+.
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 9999999998888899999999999999987665555433 33345678999999999987
No 234
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=7.1e-10 Score=124.26 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=76.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-.|+|+|.+|+|||||+++|....-.++. .. +.|.......+.+. ...
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~-~p---------------~TT~~p~~Giv~~~---------------~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVAD-YP---------------FTTLVPNLGVVRVD---------------DER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccC-CC---------------CCccCcEEEEEEeC---------------CCc
Confidence 457999999999999999999653321111 11 23444444444443 134
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC----cccccHHHHHHHHHc-----CCCceEEEEECCcc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GVCVQTETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~----gv~~qt~~~l~~~~~-----~~~p~ilviNKiD~ 162 (843)
.+.|+||||..+ +...+.+.+..+|++++|||+.. ....+...+++.+.. .+.|.++++||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 699999999754 44566778899999999999872 122222334344433 35799999999997
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 288 ~ 288 (390)
T PRK12298 288 L 288 (390)
T ss_pred C
Confidence 6
No 235
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.11 E-value=2.5e-10 Score=113.72 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=68.7
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEE
Q 003165 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||+++|....-.+.. ..+.|+......+.+. .+..++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~---------------~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVP---------------DGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcC---------------CCCeEEEE
Confidence 5899999999999999553211110 1123443333333332 15689999
Q ss_pred eCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcc------cccHHH-HHHHHH----------cCCCceEEEEEC
Q 003165 104 DSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQTET-VLRQAL----------GERIRPVLTVNK 159 (843)
Q Consensus 104 DTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv------~~qt~~-~l~~~~----------~~~~p~ilviNK 159 (843)
||||+.+ +.......++.+|++++|+|+.+.. ...... ++..+. ..+.|+++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 9999843 2334566788899999999998762 111111 222221 136899999999
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
+|+.
T Consensus 130 ~Dl~ 133 (176)
T cd01881 130 IDLD 133 (176)
T ss_pred hhcC
Confidence 9986
No 236
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.11 E-value=3.3e-10 Score=113.50 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+.++++.. ... .+.+ |+.... ..+.+ +++.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~---------~~~p-------t~~~~~~~~~~~--------------~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS---------EYVP-------TVFDNYAVTVMI--------------GGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------CCCC-------ceeeeeEEEEEE--------------CCEEE
Confidence 479999999999999999996421 111 0111 221111 11122 22357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||||+.+|.......++.+|++|+|+|.++.-+.+.. ..|. .+. ..+.|++++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 899999999999987777789999999999999875444333 2342 222 2367999999999976
No 237
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.11 E-value=6.5e-10 Score=112.68 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=79.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|..++|||||+.++... .... +....++.......+.+ ++.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~--~~~~--------------~~~~t~~~~~~~~~i~~--------------~~~ 53 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDG--STES--------------PYGYNMGIDYKTTTILL--------------DGR 53 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CCCC--------------CCCCcceeEEEEEEEEE--------------CCE
Confidence 34578999999999999999999542 1111 00001111111112222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|||+|.++.-+.+...-| ..+. ..+.|++|+.||+|+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 67899999999999998888889999999999999875444443333 2222 2467899999999985
No 238
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=5e-10 Score=109.28 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|.++|..|+|||.|+-++ .+ |..+++... ||......-.+. .+++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf-----------~~-----~~f~e~~~s--TIGVDf~~rt~e------------~~gk 56 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF-----------KD-----DTFTESYIS--TIGVDFKIRTVE------------LDGK 56 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh-----------cc-----CCcchhhcc--eeeeEEEEEEee------------ecce
Confidence 34678999999999999999988 22 222333322 444333333333 2456
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-H---HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~---~~~~~p~ilviNKiD~~ 163 (843)
..+++||||.|.++|...+....|.|+|+|+|.|.++--+......|-+ + ...++|.++|.||.|+.
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 7899999999999999999999999999999999998544444444422 1 13467999999999986
No 239
>PLN03108 Rab family protein; Provisional
Probab=99.10 E-value=8.9e-10 Score=113.79 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=76.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+|+|+.|+|||||+++|+...-... +.+ .-|.+.... .+.+. +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-----------~~~---ti~~~~~~~--~i~~~--------------~~~ 54 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------HDL---TIGVEFGAR--MITID--------------NKP 54 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCC---CccceEEEE--EEEEC--------------CEE
Confidence 457899999999999999999954321100 000 001111111 12221 235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|.......++.+|++|+|+|++..-..+...-|. .+. ..+.|++++.||+|+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 67899999999999988888999999999999998754333322222 121 2467899999999986
No 240
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.09 E-value=1e-09 Score=110.59 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=77.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...+|+++|..++|||||+.+++... ... ++.+ |+.... ..+.. +++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~--f~~---------~~~p-------T~~~~~~~~~~~--------------~~~ 51 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC--FPE---------NYVP-------TVFENYTASFEI--------------DTQ 51 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCC---------ccCC-------ceeeeeEEEEEE--------------CCE
Confidence 34579999999999999999996421 111 0111 221111 11111 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
...+.||||+|...|.......++.+|++|+|+|.++.-+.+.. ..|. .+. ..+.|++||.||+|+.
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 67899999999999988888889999999999999876444442 3342 222 2357899999999975
No 241
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.09 E-value=5.5e-10 Score=115.41 Aligned_cols=115 Identities=23% Similarity=0.208 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|+... ... .. . -|+........+.. .++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~--~~-------~-------~ti~~d~~~~~i~~-----------~~~~~~~ 53 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE--VS-------D-------PTVGVDFFSRLIEI-----------EPGVRIK 53 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--CC-------C-------ceeceEEEEEEEEE-----------CCCCEEE
Confidence 589999999999999999996422 111 00 0 12211111111110 0223578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH----cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~----~~~~p~ilviNKiD~~ 163 (843)
++++||||+..|.......++.+|++++|+|.++.-+.....-| ..+. ....|++++.||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99999999999988888899999999999999874322222222 2222 1234667899999986
No 242
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.09 E-value=7e-10 Score=111.42 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..++|||||+.++.... ... ++.+ |+.... ..+.. +++...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f~~---------~~~~-------t~~~~~~~~~~~--------------~~~~~~ 50 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--YPE---------TYVP-------TVFENYTASFEI--------------DEQRIE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCC---------CcCC-------ceEEEEEEEEEE--------------CCEEEE
Confidence 69999999999999999995421 110 1111 221111 01111 234678
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHH-HH--cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~-~~--~~~~p~ilviNKiD~~ 163 (843)
++||||||+..|.......++.+|++|+|+|.++.-+.+. ..-|.. +. ..+.|+++|.||+|+.
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9999999999998877888999999999999987544443 233422 22 2467889999999975
No 243
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.09 E-value=3.2e-10 Score=112.46 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=72.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...-. .. ... .........+.+ .+....+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~-~~~---------------~~~~~~~~~~~~--------------~~~~~~l 50 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TE-YVP---------------TVFDNYSATVTV--------------DGKQVNL 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CC-CCC---------------ceeeeeEEEEEE--------------CCEEEEE
Confidence 6899999999999999999653210 00 000 000000111111 1236789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||+.+|.......++.+|++++|+|+++..+.+.. ..| .... ..+.|+++++||+|+.
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 9999999999877666777899999999999874333222 222 2222 2358999999999987
No 244
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.09 E-value=5.9e-10 Score=112.88 Aligned_cols=113 Identities=20% Similarity=0.299 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+... ... .+.+ .-|.+... ..+.+ ++....+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~---------~~~~---t~~~~~~~--~~~~~--------------~~~~~~~ 51 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE---------STKS---TIGVDFKI--KTVYI--------------ENKIIKL 51 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------CCCC---ceeeEEEE--EEEEE--------------CCEEEEE
Confidence 69999999999999999995321 110 0000 00111111 11222 1235788
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.++||||+.+|.......++.+|++++|+|+++.-+......| .... ....|++++.||+|+.
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 9999999999999999999999999999999875433322223 2222 2346888999999976
No 245
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.09 E-value=5.3e-10 Score=111.30 Aligned_cols=115 Identities=19% Similarity=0.101 Sum_probs=75.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcc-cccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~ 93 (843)
.+..+|+++|..|+|||||+.+++... .. . .+.+ |+.... ..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~---------~~~~-------T~~~~~~~~~~~~~------------- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLN---------AYSP-------TIKPRYAVNTVEVY------------- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCcc---------cCCC-------ccCcceEEEEEEEC-------------
Confidence 357899999999999999999995421 11 1 0111 221111 112221
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH-cCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~-~~~~p~ilviNKiD~~ 163 (843)
+....++++||+|...|.......++.+|++++|+|+++.-+.+.. ..++... ..++|+++|+||+|+.
T Consensus 51 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 51 -GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred -CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 2346788999999999887777788999999999999875322221 2222221 2368999999999975
No 246
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.09 E-value=3.3e-10 Score=114.94 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeE-EEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
|+|+++|..|+|||||+.+++... ... .+.+ |+..... .+.. +++..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~i~~--------------~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQ---------VYEP-------TVFENYVHDIFV--------------DGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCC---------ccCC-------cceeeeEEEEEE--------------CCEEE
Confidence 579999999999999999995421 111 0000 1111111 0111 22357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|..-....++.+|++|+|+|.++--+.+... .| ..+. ..+.|+++|.||+|+.
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 8999999999998776667788999999999988754444332 23 2222 2367899999999986
No 247
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=7e-10 Score=121.89 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-+..|+++|.+|||||||+++|......+. ++ .+.|+......+.+. ..
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va----------~y------pfTT~~p~~G~v~~~---------------~~ 205 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIA----------DY------PFTTLHPNLGVVRVD---------------DY 205 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccC----------CC------CCceeCceEEEEEeC---------------CC
Confidence 356899999999999999999954321111 11 123555555555553 25
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc-----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~-----~~~p~ilviNKiD~~ 163 (843)
..+.++||||..+ +.....+.+..+|++++|+|+++.-..+....| ..+.. .++|.++|+||+|+.
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6799999999753 445666777889999999999863322232333 22222 367999999999986
No 248
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.08 E-value=9.7e-10 Score=110.84 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=72.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..++|||||+.+++... ... ++.+ |+.... ..+.. ++...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~---------~~~~-------T~g~~~~~~~i~~--------------~~~~~ 49 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDE---------DYIQ-------TLGVNFMEKTISI--------------RGTEI 49 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC---------CCCC-------ccceEEEEEEEEE--------------CCEEE
Confidence 68999999999999999995421 110 0111 221111 11222 22357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc--CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
.++||||+|+..|......+++.+|++++|+|+++--+.+...-| ..+.. ...+++++.||+|+.
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 899999999999998888899999999999999875433332222 22222 222347899999985
No 249
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.08 E-value=1.9e-10 Score=107.08 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=71.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|.|+|..|+|||||+++|+...... ....+...+.++......... ....+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 52 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPD------------NSVPEETSEITIGVDVIVVDG----------------DRQSL 52 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETT----------------EEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcc------------cccccccCCCcEEEEEEEecC----------------CceEE
Confidence 58999999999999999997654320 000011112233222222211 24468
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHH---HHHHH--cCCCceEEEEECCc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETV---LRQAL--GERIRPVLTVNKMD 161 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~---l~~~~--~~~~p~ilviNKiD 161 (843)
.++|++|...+.......+..+|++++|+|+++.-+.+- ..+ +.... ..++|++++.||.|
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999998888766666999999999999998543222 222 12222 24589999999998
No 250
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.08 E-value=7e-10 Score=110.53 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=72.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCceEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
|+|+|..|+|||||+++++... .... +.+ |+.... ..+.+ +++...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~---------~~~-------~~~~~~~~~~~~--------------~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPED---------YVP-------TVFENYSADVEV--------------DGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCC---------CCC-------cEEeeeeEEEEE--------------CCEEEEE
Confidence 5899999999999999996522 1110 000 111110 11111 2235679
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||+.+|.......++.+|++|+|+|.++.-+.+.. ..| .... ..+.|+++++||+|+.
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 9999999999988777788999999999999874333222 122 2222 2368999999999986
No 251
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.07 E-value=6.4e-10 Score=111.39 Aligned_cols=112 Identities=23% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
++..+|.++|..|||||||+++|.. +.... ..| |+......+.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------~~p-------T~g~~~~~i~~~---------------- 56 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------TIP-------TIGFNIEEIKYK---------------- 56 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------EEE-------ESSEEEEEEEET----------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------cCc-------ccccccceeeeC----------------
Confidence 5667899999999999999999932 21111 111 322233344453
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHH----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
++.++++|.+|+..|.......+..+|++|+|||+++.- ..+....+..+. ..++|+++++||.|++
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 789999999999988888888899999999999999742 223333444332 2467899999999987
No 252
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.07 E-value=9.6e-10 Score=110.13 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..++|||||+.+++.. .... ++. .|+.... ...+. .+++..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~f~~---------~~~-------~Ti~~~~-~~~~~------------~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--KFPT---------DYI-------PTVFDNF-SANVS------------VDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCC---------CCC-------Ccceeee-EEEEE------------ECCEEEE
Confidence 47999999999999999999542 1111 011 1222111 11111 1234688
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHH--cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
++|+||+|+.+|.......++.+|++|||+|.++--+.+.. ..| ..+. ..+.|++||.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 99999999999998888899999999999999875444432 223 2222 2467899999999985
No 253
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.07 E-value=6.3e-10 Score=115.43 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+.++.... ... ++.| |+.... ..+.. +++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~---------~y~p-------Ti~~~~~~~~~~--------------~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPG---------SYVP-------TVFENYTASFEI--------------DKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------ccCC-------ccccceEEEEEE--------------CCEEE
Confidence 479999999999999999995421 110 1111 221111 11112 23467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHH---HcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~---~~~~~p~ilviNKiD~~ 163 (843)
.++||||+|...|......+++.+|++|+|+|.++.-+.+.. ..|... ...+.|++||.||+|+.
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 899999999999998888899999999999999885433332 234321 12467999999999975
No 254
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.07 E-value=8.2e-10 Score=116.66 Aligned_cols=111 Identities=19% Similarity=0.255 Sum_probs=73.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEe-eeeEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK-STGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++++... .... +.+ |+. .....+.+ ++..+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~~---------y~p-------Ti~d~~~k~~~i--------------~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEEQ---------YTP-------TIEDFHRKLYSI--------------RGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCCC---------CCC-------ChhHhEEEEEEE--------------CCEEEE
Confidence 69999999999999999996421 1110 000 111 00111112 223578
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHHHHc------------CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~~~~------------~~~p~ilviNKiD~~ 163 (843)
++||||||+.+|......+++.+|++|+|+|.++.-+.+... .+..+.. .++|+++++||+|+.
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 999999999999877777789999999999998754333222 2222221 357899999999986
No 255
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.07 E-value=1.4e-09 Score=119.42 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=74.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-+-.|+++|.+|+|||||+++|......+.. + ...|.......+.+. ..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------y------~fTT~~p~ig~v~~~---------------~~ 204 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIAD----------Y------PFTTLVPNLGVVRVD---------------DG 204 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccC----------C------CCCccCCEEEEEEeC---------------Cc
Confidence 3678999999999999999999543221111 0 012333333334443 13
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCc---ccccHHHHH-HHHHc-----CCCceEEEEECCc
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~~qt~~~l-~~~~~-----~~~p~ilviNKiD 161 (843)
..+.|+||||..+ +.....+.+..+|++++|+|++.. -..+....| +.+.. .+.|.++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 7899999999853 334556667789999999999863 111222222 22221 3679999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 285 L~ 286 (329)
T TIGR02729 285 LL 286 (329)
T ss_pred CC
Confidence 86
No 256
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.06 E-value=2.6e-09 Score=114.61 Aligned_cols=123 Identities=21% Similarity=0.281 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||+++|+.|+|||||+++|+...-.... +. .+...++..+.+++......+.. ++....
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~---~~---~~~~~~~~~~T~~i~~~~~~i~~--------------~g~~~~ 64 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD---YP---PDPAEEHIDKTVEIKSSKAEIEE--------------NGVKLK 64 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc---CC---CCccccccCCceEEEEEEEEEEE--------------CCEEEE
Confidence 58999999999999999999654322111 00 00011112222233332222222 123468
Q ss_pred EEEEeCCCCcccHH---------------------HHHHHhh-------ccCcEEEEecCCC-cccccHHHHHHHHHcCC
Q 003165 100 INLIDSPGHVDFSS---------------------EVTAALR-------ITDGALVVVDCIE-GVCVQTETVLRQALGER 150 (843)
Q Consensus 100 i~liDTPGh~df~~---------------------e~~~~l~-------~~D~ailVvda~~-gv~~qt~~~l~~~~~~~ 150 (843)
+++|||||..|+.. +.....+ .+|++++++++.. ++......+++.+.. +
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~ 143 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-R 143 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-c
Confidence 99999999876543 1111112 3688999998874 777777777777754 7
Q ss_pred CceEEEEECCccc
Q 003165 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNKiD~~ 163 (843)
+|+++|+||+|+.
T Consensus 144 v~vi~VinK~D~l 156 (276)
T cd01850 144 VNIIPVIAKADTL 156 (276)
T ss_pred CCEEEEEECCCcC
Confidence 8999999999975
No 257
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.06 E-value=2.6e-09 Score=109.23 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..++|||||+.+++... ... + ..-|+.... ..+.+.. ...+++.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f~~--------------~--~~~Tig~~~~~k~~~~~~---------~~~~~~~~ 54 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--VLG--------------R--PSWTVGCSVDVKHHTYKE---------GTPEEKTF 54 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCC--------------C--CCcceeeeEEEEEEEEcC---------CCCCCcEE
Confidence 68999999999999999995421 110 0 011222111 1122210 01123467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHc----------------------CCCceEE
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----------------------ERIRPVL 155 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~----------------------~~~p~il 155 (843)
.++|+||+|+.+|.......++.+|++|+|+|.++.-+.+...-|. .+.. .++|++|
T Consensus 55 ~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~Piil 134 (202)
T cd04102 55 FVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLV 134 (202)
T ss_pred EEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEE
Confidence 8999999999999888888999999999999999865444444442 2211 3578999
Q ss_pred EEECCccc
Q 003165 156 TVNKMDRC 163 (843)
Q Consensus 156 viNKiD~~ 163 (843)
|.||+|+.
T Consensus 135 VGnK~Dl~ 142 (202)
T cd04102 135 IGTKLDQI 142 (202)
T ss_pred EEECccch
Confidence 99999975
No 258
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.06 E-value=7.6e-10 Score=110.74 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+.+++.. .... .+. .|+... ...+.+ +++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~--~f~~---------~~~-------~t~~~~~~~~~~~--------------~~~~~ 49 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTN--AFPG---------EYI-------PTVFDNYSANVMV--------------DGKPV 49 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC---------cCC-------CcceeeeEEEEEE--------------CCEEE
Confidence 37999999999999999999542 1111 000 011110 011111 23467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHH-HH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~-~~--~~~~p~ilviNKiD~~ 163 (843)
.++|+||||..+|.......++.+|++|+|+|.++.-+.+.. ..|.. +. ..+.|++++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 899999999999988888889999999999999875443333 22322 21 2357999999999986
No 259
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=1.1e-09 Score=111.40 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..++|||||+.++++. .... .+. -|+.... ...+. .+++...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~--~f~~---------~~~-------~t~~~~~-~~~~~------------~~~~~~~ 52 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTN--AFPK---------EYI-------PTVFDNY-SAQTA------------VDGRTVS 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhC--CCCc---------CCC-------CceEeee-EEEEE------------ECCEEEE
Confidence 47999999999999999999542 1111 000 1222111 11111 1234678
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHH-HH--cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~-~~--~~~~p~ilviNKiD~~ 163 (843)
++|+||||+..|.......++.+|++|+|+|.++--+.+... .|.. +. ..++|++|+.||.|+.
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 999999999999988888899999999999998754443332 3432 21 2468999999999986
No 260
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.05 E-value=2.1e-09 Score=112.17 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=76.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..++|||||+.+++... ... .+.+ |+.... ..... .+++..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~--F~~---------~y~p-------Ti~~~~-~~~i~------------~~~~~v 61 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC--YPE---------TYVP-------TVFENY-TAGLE------------TEEQRV 61 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC--CCC---------CcCC-------ceeeee-EEEEE------------ECCEEE
Confidence 3479999999999999999995421 111 0111 221111 01111 123467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHH-HHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||+|..+|.......++.+|++|+|+|.++.-+.+. ...|. .+. ..+.|+++|.||+|+.
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 89999999999998888889999999999999987554443 23342 222 2357889999999975
No 261
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.04 E-value=6.4e-10 Score=105.48 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=70.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|.++|++|+|||||+++|........ -|. .+.|.
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~~~--------------------KTq-----~i~~~------------------ 37 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIRYK--------------------KTQ-----AIEYY------------------ 37 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCCcC--------------------ccc-----eeEec------------------
Confidence 36899999999999999999933221111 122 12221
Q ss_pred EEEEEeCCC----CcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPG----h~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
=++||||| +..|....+.....||.+++|.||++..+.-.-. .+...+.|+|-||||+|+.
T Consensus 38 -~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 38 -DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLP 102 (143)
T ss_pred -ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCc
Confidence 25699999 5678888888889999999999999864433322 3344568888899999987
No 262
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.03 E-value=7.4e-10 Score=110.48 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
++|+|+|+.|+|||||+.+++...- ... +.+ |+... ...+.+ +++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEV---------YVP-------TVFENYVADIEV--------------DGKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCC---------CCC-------ccccceEEEEEE--------------CCEEE
Confidence 5899999999999999999965221 100 000 11110 011222 12356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
.+.|+||||+.+|......+++.+|++++|+|..+--..... ..|. .+. ..++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 789999999999887666788999999999998753221111 1222 122 2478999999999976
No 263
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.01 E-value=2.8e-09 Score=121.50 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=74.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-+..|+++|.+|+|||||+++|....-.+. ++ .+.|+......+.+. +
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIa----------dy------pfTTl~P~lGvv~~~----------------~ 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIA----------DY------PFTTLVPNLGVVQAG----------------D 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcccc----------cc------CcccccceEEEEEEC----------------C
Confidence 367899999999999999999954322111 11 134555544455554 6
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC---cccc--cHH----HHHHHH----------HcCCC
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCV--QTE----TVLRQA----------LGERI 151 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~---gv~~--qt~----~~l~~~----------~~~~~ 151 (843)
..+.|+||||..+ ...+..+.+..||++|+|||++. +-.+ +.. ++..+. ...+.
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 7899999999653 22345666788999999999974 1111 111 121221 12367
Q ss_pred ceEEEEECCccc
Q 003165 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNKiD~~ 163 (843)
|.++|+||+|++
T Consensus 286 P~IVVlNKiDL~ 297 (500)
T PRK12296 286 PRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECccch
Confidence 999999999986
No 264
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.01 E-value=2.4e-09 Score=105.60 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=73.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee--EEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG--ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+.+++. +..... .. -|+.... ..+.. ++...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~~-~~---------------~t~~~~~~~~~~~~--------------~~~~~ 49 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHSS-HI---------------STIGVDFKMKTIEV--------------DGIKV 49 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCCC-CC---------------CceeeEEEEEEEEE--------------CCEEE
Confidence 689999999999999999953 211110 00 1222111 12222 12356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.++++||||..+|........+.+|++++|+|..+.-+.+...-| ..+. ..+.|++++.||+|+.
T Consensus 50 ~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 50 RIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 889999999999998888899999999999998874332222222 1111 2357889999999975
No 265
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.01 E-value=2.1e-09 Score=111.33 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=78.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++++.. ..... + ..|+........+. .+++.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~--~~~~~------~----------~~t~~~~~~~~~~~------------~~~~~ 57 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTG--EFEKK------Y----------IPTLGVEVHPLKFY------------TNCGP 57 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhC--CCCCC------C----------CCccceEEEEEEEE------------ECCeE
Confidence 3458999999999999999877532 11110 0 01222222222222 12346
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHH---HcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~---~~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|.......++.+|++++|+|.++..+.++...|..- ...++|++++.||+|+.
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 8999999999999987777788899999999999987665554444211 13467888899999975
No 266
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.99 E-value=1.3e-09 Score=108.82 Aligned_cols=111 Identities=14% Similarity=0.159 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeE-eeeeEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI-KSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+++++|..|+|||||+.+++... ... .+.+ |+ ..-...+.. ++....
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~~~~~ 49 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPT---------EYVP-------TAFDNFSVVVLV--------------DGKPVR 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC---------CCCC-------ceeeeeeEEEEE--------------CCEEEE
Confidence 68999999999999999985421 111 0000 11 000111112 123568
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH--HHHHHHHc--CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~--~~l~~~~~--~~~p~ilviNKiD~~ 163 (843)
+++|||||+.+|......+++.+|++|+|+|+++.-+.+.. ..+..... .+.|++++.||+|+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 50 LQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 89999999999887777788999999999999875433322 22233332 467899999999976
No 267
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.98 E-value=7.2e-09 Score=101.83 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=72.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|+.|+|||||+++|......... .+ ..+.|.... .+.+ ...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~--~~------------~~~~t~~~~--~~~~-----------------~~~~~ 48 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART--SK------------TPGKTQLIN--FFNV-----------------NDKFR 48 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee--cC------------CCCcceeEE--EEEc-----------------cCeEE
Confidence 799999999999999999532111100 11 112232211 1222 23789
Q ss_pred EEeCCCCccc----------HHHHHHHhh---ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 102 LIDSPGHVDF----------SSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df----------~~e~~~~l~---~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||+.+. ...+...+. .++++++|+|...........+++.+...+.|+++++||+|+.
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 9999998653 222333333 4578999999988776776777777777888999999999975
No 268
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.98 E-value=5.7e-09 Score=117.63 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=73.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.-|+++|.+|+|||||+++|......+.. .. +.|.......+.+. .+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-yp---------------fTTl~PnlG~v~~~---------------~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-YH---------------FTTLVPNLGVVETD---------------DGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-CC---------------cceeceEEEEEEEe---------------CCc
Confidence 458999999999999999999643322211 01 23444443334443 146
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCc--ccc-cH-HHHHHHHHc-----CCCceEEEEECCcc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VCV-QT-ETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g--v~~-qt-~~~l~~~~~-----~~~p~ilviNKiD~ 162 (843)
.++|+||||... +.....+.+..+|++++|||++.. ..+ +. ..+...+.. .++|.+||+||+|+
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 799999999753 334455666779999999999752 122 12 222222222 36799999999997
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 287 ~ 287 (424)
T PRK12297 287 P 287 (424)
T ss_pred c
Confidence 5
No 269
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.97 E-value=1.7e-09 Score=127.60 Aligned_cols=104 Identities=25% Similarity=0.257 Sum_probs=73.8
Q ss_pred eCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEEeC
Q 003165 26 AHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDS 105 (843)
Q Consensus 26 G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDT 105 (843)
|.+|+|||||+++|....-. .+ ...|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-----v~-----------n~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-----VG-----------NWPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-----ec-----------CCCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 78999999999999432110 11 13477887766666664 678999999
Q ss_pred CCCcccHHH-----HHH-H--hhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 106 PGHVDFSSE-----VTA-A--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df~~e-----~~~-~--l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
||+.+|... +.+ . ...+|++++|+|++.. ........++.+.++|+++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887542 222 2 2468999999999873 223344456667889999999999975
No 270
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.97 E-value=2.2e-09 Score=111.10 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+||++|.+|+|||||+|.|+...-........ .|.......+.- +
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~---------------TTr~~ilgi~ts----------------~ 118 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH---------------TTRHRILGIITS----------------G 118 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc---------------ceeeeeeEEEec----------------C
Confidence 457899999999999999999996643332221111 122211111211 3
Q ss_pred ceEEEEEeCCCCc------------ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH-cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~------------df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~-~~~~p~ilviNKiD~~ 163 (843)
...+.|.||||.+ .|......|+..||++++|+|+.+--..-.-.+++... ..++|-++|.||+|.+
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 7889999999953 25556778999999999999999622222234555443 4568999999999976
No 271
>PLN00023 GTP-binding protein; Provisional
Probab=98.96 E-value=3.7e-09 Score=113.57 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=77.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+.+++... ... .+ ...-|.+.... .+.+.........+ ...+++.
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~--F~~---------~~---~pTIG~d~~ik--~I~~~~~~~~~~~i-k~d~~k~ 82 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS--SIA---------RP---PQTIGCTVGVK--HITYGSPGSSSNSI-KGDSERD 82 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--ccc---------cc---CCceeeeEEEE--EEEECCcccccccc-cccCCce
Confidence 45689999999999999999995321 100 00 00011122111 12222000000000 0011246
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---------------CCCceEEEEECCc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---------------ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---------------~~~p~ilviNKiD 161 (843)
+.++||||+|+..|.......++.+|++|+|+|.++--......-| ..+.. .++|++||.||+|
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 7899999999999999888899999999999999874333222223 22222 1378899999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 163 L~ 164 (334)
T PLN00023 163 IA 164 (334)
T ss_pred cc
Confidence 86
No 272
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=7.2e-09 Score=100.82 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=86.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+.+..+|+++|..++|||||+.+++|..-- ..+ +-||.....+..+. .++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd-----------~~Y-------qATIGiDFlskt~~------------l~d 68 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD-----------NTY-------QATIGIDFLSKTMY------------LED 68 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc-----------ccc-------cceeeeEEEEEEEE------------EcC
Confidence 345579999999999999999999885421 111 23666665555544 244
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-cHHHHHHHHHcCC----CceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALGER----IRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-qt~~~l~~~~~~~----~p~ilviNKiD~~ 163 (843)
..+.+.||||.|++.|..-+..++|.+.+||+|.|.++--+. +|..-+.-+..++ +-+++|.||.|+.
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 578999999999999999999999999999999999874443 3333334444333 3345699999987
No 273
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.93 E-value=4.9e-09 Score=109.15 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=68.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeE--eeeeEEEEEeecccccccccCcCCCCce
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI--KSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+++++. +.... ..+. .|+ .....++.+ ++...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~--------~~~~-------~t~~~~~~~~~i~~--------------~~~~~ 50 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD--------HAYD-------ASGDDDTYERTVSV--------------DGEES 50 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc--------cCcC-------CCccccceEEEEEE--------------CCEEE
Confidence 699999999999999999953 21110 0000 011 000111222 12367
Q ss_pred EEEEEeCCCCcccHHHHHHHhh-ccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~-~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
.++||||||+.++.. ...++ .+|++++|+|+++.-..+.. ..+..+.. .++|+++|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 51 TLVVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 899999999984433 24556 89999999999985433322 22222322 467999999999975
No 274
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.93 E-value=4.5e-09 Score=107.42 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=69.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|.+|+|||||+++|+...... .|.. ..+. ...|.... .+. ......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~-~~~~------~~~t~~~~----~~~-------------~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEE----EGAA-PTGV------VETTMKRT----PYP-------------HPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCC----CCcc-ccCc------cccccCce----eee-------------cCCCCC
Confidence 369999999999999999996532110 1110 0000 00111110 111 011346
Q ss_pred EEEEeCCCCcccHHHHH-----HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVT-----AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~-----~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.++||||..+...... ..+..+|.+++|.| +.+......+++.+...+.|+++|+||+|+.
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 89999999865322211 22456788887754 3455555666777777788999999999985
No 275
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.4e-09 Score=100.82 Aligned_cols=115 Identities=23% Similarity=0.178 Sum_probs=78.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..++.++|..|+|||.|+-++..+ ....++. .|+......-.+. .+++..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~k-----------rF~~~hd-------~TiGvefg~r~~~------------id~k~I 55 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDK-----------RFQPVHD-------LTIGVEFGARMVT------------IDGKQI 55 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhcc-----------Ccccccc-------ceeeeeeceeEEE------------EcCceE
Confidence 457899999999999999888321 1111111 1332222111111 245678
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
+++||||.||+.|..-+.++.+.+-||+||.|.+.--+......| ++....+..++++.||+|+.
T Consensus 56 KlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 56 KLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred EEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 999999999999999999999999999999998753333333333 22224566777899999986
No 276
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=6.5e-09 Score=114.30 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=88.8
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..+.-.+|+|+|++|+|||||+|+|......|....+|+ |.++-.+.+..+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GT---------------TRDaiea~v~~~-------------- 314 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGT---------------TRDAIEAQVTVN-------------- 314 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCc---------------chhhheeEeecC--------------
Confidence 334457899999999999999999999888888777774 555545555554
Q ss_pred CCceEEEEEeCCCCcc---------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC------------ce
Q 003165 95 GNEYLINLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI------------RP 153 (843)
Q Consensus 95 ~~~~~i~liDTPGh~d---------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~------------p~ 153 (843)
++++.|+||.|... =......++..+|.+++|+|+.++...+...+.+.+...+. |.
T Consensus 315 --G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~ 392 (531)
T KOG1191|consen 315 --GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRI 392 (531)
T ss_pred --CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccce
Confidence 89999999999765 12235567889999999999999877777776666654443 45
Q ss_pred EEEEECCccc
Q 003165 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNKiD~~ 163 (843)
+++.||.|..
T Consensus 393 i~~~nk~D~~ 402 (531)
T KOG1191|consen 393 ILVANKSDLV 402 (531)
T ss_pred EEEechhhcc
Confidence 5566666654
No 277
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.88 E-value=1.4e-08 Score=99.80 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=75.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+|.... .... +.+ .-|... ....+.. ++....+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~~---------~~~---t~~~~~--~~~~~~~--------------~~~~~~l 50 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPEN---------YIP---TIGIDS--YSKEVSI--------------DGKPVNL 50 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTSS---------SET---TSSEEE--EEEEEEE--------------TTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cccc---------ccc---cccccc--ccccccc--------------ccccccc
Confidence 58999999999999999996432 1110 000 001111 1122222 2347789
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-HH---cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~~---~~~~p~ilviNKiD~~ 163 (843)
.|+||+|+.+|.......++.+|++|+|+|.++.-+-+...-|.. +. ....|++++.||.|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 999999999998888888999999999999987544444333322 11 2246888899999987
No 278
>PRK09866 hypothetical protein; Provisional
Probab=98.87 E-value=2.2e-08 Score=114.63 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=56.4
Q ss_pred ceEEEEEeCCCCcc-----cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC--ceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI--RPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d-----f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~--p~ilviNKiD~~ 163 (843)
...+.|+||||... +...+..++..+|.+++|+|+..+.....+.+++.+.+.+. |+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 46789999999643 45567789999999999999999888888888888777774 999999999975
No 279
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.3e-08 Score=91.38 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=82.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+-..+|+++|..|+|||.|+.++ ..|.... | .|-||......-..+ .++.
T Consensus 5 kflfkivlvgnagvgktclvrrf--tqglfpp---g-------------qgatigvdfmiktve------------v~ge 54 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRF--TQGLFPP---G-------------QGATIGVDFMIKTVE------------VNGE 54 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhh--hccCCCC---C-------------CCceeeeeEEEEEEE------------ECCe
Confidence 44678999999999999999998 5565543 2 133554433222222 2345
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++.||||.|.+.|.+-+.++.|.+.+.|||.|.+.-.+..-. ++-.++ ..++--|+|.||+|+.
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLA 125 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchh
Confidence 77899999999999999999999999999999998764433222 222222 3445567899999975
No 280
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.84 E-value=9.7e-08 Score=100.70 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=71.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
......||+++|++|+|||||+|+|+......... +. +.|.........+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~---------~~------~~T~~~~~~~~~~~-------------- 77 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA---------FQ------SETLRVREVSGTVD-------------- 77 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC---------CC------CceEEEEEEEEEEC--------------
Confidence 34456799999999999999999997654322211 10 11333222233333
Q ss_pred CCceEEEEEeCCCCcccHH------H----HHHHhh--ccCcEEEEecCCC-cccccHHHHHHHHHc-CC----CceEEE
Q 003165 95 GNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVLT 156 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~------e----~~~~l~--~~D~ailVvda~~-gv~~qt~~~l~~~~~-~~----~p~ilv 156 (843)
+..+++|||||..+... + +...+. ..|++++|..... ........+++.+.. .+ .+.+++
T Consensus 78 --g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 78 --GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred --CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 67899999999887731 1 222232 4577777754432 233343445544432 22 368899
Q ss_pred EECCccc
Q 003165 157 VNKMDRC 163 (843)
Q Consensus 157 iNKiD~~ 163 (843)
+||+|..
T Consensus 156 ~T~~d~~ 162 (249)
T cd01853 156 LTHAASS 162 (249)
T ss_pred EeCCccC
Confidence 9999985
No 281
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.83 E-value=7.2e-09 Score=99.81 Aligned_cols=117 Identities=20% Similarity=0.196 Sum_probs=85.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|.|+|.+|+|||+|.+++.+.. . .++...||.....+-.+. .+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~k--F----------------~~qykaTIgadFltKev~------------Vd~~ 56 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKK--F----------------SQQYKATIGADFLTKEVQ------------VDDR 56 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHH--H----------------HHHhccccchhheeeEEE------------EcCe
Confidence 346799999999999999999996531 0 111223554444333333 2345
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-----HHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-----~~~~---~~~p~ilviNKiD~~ 163 (843)
...+.||||.|.+.|-+--....|.+|+++||.|....-+..+..-|+ ++.. +.-|.||+.||+|..
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 778999999999999988888899999999999998765556655554 3321 345899999999986
No 282
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=8.1e-09 Score=100.55 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=82.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-+|+++|..++|||||+-++.. +...+ + .| -||..+..+..+.. +....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk--~~F~e----------~--~e----~TIGaaF~tktv~~------------~~~~i 54 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVK--DQFHE----------N--IE----PTIGAAFLTKTVTV------------DDNTI 54 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhh--Ccccc----------c--cc----cccccEEEEEEEEe------------CCcEE
Confidence 35799999999999999988833 11111 0 01 26666655555542 22367
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC-c-e--EEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-R-P--VLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-p-~--ilviNKiD~~ 163 (843)
++-||||.|.+.|.+-..-+.|.|++||+|.|.++--+.+...-|-.=...+. | + .|+.||+|+.
T Consensus 55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 89999999999999999999999999999999998656666555543333333 3 3 3589999987
No 283
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.82 E-value=1e-08 Score=96.12 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=79.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-..+|-++|..|+|||+|+-++.... .+ .+. ..||....-.-... .+++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~--fd--------------~~~--~~tIGvDFkvk~m~------------vdg~~ 59 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT--FD--------------DLH--PTTIGVDFKVKVMQ------------VDGKR 59 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc--cC--------------ccC--CceeeeeEEEEEEE------------EcCce
Confidence 34689999999999999998883321 11 111 12333322211122 35678
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH-----cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~-----~~~~p~ilviNKiD~~ 163 (843)
.++.||||+|.+.|...+.++.|.|-|+|+|.|.+.--+..-..+|..-. ..++-.++|.||+|+.
T Consensus 60 ~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 60 LKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 99999999999999999999999999999999987643333335554322 2334456799999976
No 284
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.5e-08 Score=98.01 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=82.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|.++|.+++|||+++.++...+-.. .+.. --||-.....+. .++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-----------~~~s---TiGIDFk~kti~----------------l~g 58 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-----------SFIS---TIGIDFKIKTIE----------------LDG 58 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcC-----------Cccc---eEEEEEEEEEEE----------------eCC
Confidence 3567789999999999999999984332111 0000 001222221111 134
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH----cCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+..++.+|||.|...|..-+..++|.|+|++||+|.+...+.....-|.... ..++|.+||.||+|+.
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 5788999999999999999999999999999999998765555444453322 3477899999999987
No 285
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.80 E-value=3.1e-08 Score=114.04 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..||++|++|+|||||.|+|.. .....-+.| |.|+......+.+. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG-----------~~q~VgNwp-----GvTVEkkeg~~~~~----------------~~~ 51 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTG-----------ANQKVGNWP-----GVTVEKKEGKLKYK----------------GHE 51 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhc-----------cCceecCCC-----CeeEEEEEEEEEec----------------Cce
Confidence 4599999999999999999933 222222333 78999888888886 788
Q ss_pred EEEEeCCCCcccHH----H--HHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSS----E--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~----e--~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++++|.||.-++.. | +...+ ...|++|-|+||+. . .....+.-|+.+.++|+++++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-L-eRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-L-ERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-H-HHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 99999999765432 2 23333 35699999999975 1 122233346779999999999999975
No 286
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.78 E-value=8.1e-08 Score=100.25 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=53.4
Q ss_pred ceEEEEEeCCCCccc-------------HHHHHHHhh-ccCcEEEEecCCCcccccH-HHHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~e~~~~l~-~~D~ailVvda~~gv~~qt-~~~l~~~~~~~~p~ilviNKiD 161 (843)
-..++||||||..+. ...+..+++ ..+.+++|+||..++..+. ..+.+.+...+.+.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 357999999998632 123566777 4468999999999988877 5777888888899999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 204 ~~ 205 (240)
T smart00053 204 LM 205 (240)
T ss_pred CC
Confidence 87
No 287
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.77 E-value=4e-08 Score=101.90 Aligned_cols=114 Identities=20% Similarity=0.165 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|....-. + +. ..|+.......... ...+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~--~--------------~~--~~t~~~~~~~~~~~------------~~~~~~~ 55 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP--E--------------GY--PPTIGNLDPAKTIE------------PYRRNIK 55 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc--c--------------cC--CCceeeeeEEEEEE------------eCCCEEE
Confidence 78999999999999999999442211 0 00 11222222222211 0112567
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-ccccHHHHHH-HHHc---CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l~-~~~~---~~~p~ilviNKiD~~ 163 (843)
+.+|||+|+.+|..-+....+.++++++|+|.... ...+....|. .+.. .+.|++++.||+|+.
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 89999999999999999999999999999999862 2223333333 3333 257899999999987
No 288
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.76 E-value=8.3e-08 Score=99.03 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=104.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...-||-++|..|+|||||+|+|+......... .|.. +|-. |. .-..+ .
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg~~--t~~~--------~~----~~~~~----------------~ 85 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VGVG--TDIT--------TR----LRLSY----------------D 85 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeee-cccC--CCch--------hh----HHhhc----------------c
Confidence 356788899999999999999997533322111 1210 0000 00 00111 2
Q ss_pred ceEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCceEEEEECCccccccc
Q 003165 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~ilviNKiD~~~~~~ 167 (843)
.+.++|+||||..| +.......+...|.+++++|+.+---.-.+..|+.+... +.+.+++||..|+..--.
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 57899999999987 666688888999999999999986656666777766544 357889999999863211
Q ss_pred ------cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHh
Q 003165 168 ------QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 168 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
+.......+.+++..+.+..++. |. -+|.++++..+|++ +.++..+
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q-------------~V-~pV~~~~~r~~wgl--~~l~~al 217 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQ-------------EV-KPVVAVSGRLPWGL--KELVRAL 217 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHh-------------hc-CCeEEeccccCccH--HHHHHHH
Confidence 12222333444555555544443 21 15777888889975 4444444
No 289
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=2.7e-08 Score=98.37 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=79.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+.|-++|..|+|||+|.-+|++... .++ + .+|......+.+. +
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~------~~T--v-----------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH------RGT--V-----------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc------cCe--e-----------eeeccceeeEeec----------------C
Confidence 346799999999999999999955421 221 1 2455555555553 4
Q ss_pred eEEEEEeCCCCcccHHHHHHHhh---ccCcEEEEecCCCcccccHHHH-------HHHH--HcCCCceEEEEECCccccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETV-------LRQA--LGERIRPVLTVNKMDRCFL 165 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~---~~D~ailVvda~~gv~~qt~~~-------l~~~--~~~~~p~ilviNKiD~~~~ 165 (843)
...+|||-|||..........+. .+-++|+|||+.. ....-+.+ +-.+ ...+.|++++.||-|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~-f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~-- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSAT-FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF-- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccc-cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh--
Confidence 55899999999999888888777 7899999999976 22222222 2222 13345677899999998
Q ss_pred cccCCHHHH
Q 003165 166 ELQVDGEEA 174 (843)
Q Consensus 166 ~~~~~~~~~ 174 (843)
-+.+.+.
T Consensus 159 --tAkt~~~ 165 (238)
T KOG0090|consen 159 --TAKTAEK 165 (238)
T ss_pred --hcCcHHH
Confidence 6654443
No 290
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.74 E-value=4.8e-08 Score=98.87 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+|+|..|+|||||+++|... ..... .. .|+.... ..+.+ ++...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~~~~-~~---------------~t~~~~~~~~~~~--------------~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EFPEE-YH---------------PTVFENYVTDCRV--------------DGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCcc-cC---------------CcccceEEEEEEE--------------CCEEE
Confidence 47999999999999999999531 11110 00 0111110 01111 12245
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|.+..-..+.. ..|. .+. ....|++++.||+|+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 789999999988765544567899999999998764332222 1232 221 2357999999999975
No 291
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.73 E-value=1.3e-07 Score=99.25 Aligned_cols=98 Identities=26% Similarity=0.281 Sum_probs=64.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||+++|...... .+. ..+.|.......+.+. +..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-----v~~-----------~~~tT~~~~~g~~~~~----------------~~~i 49 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-----VAA-----------YEFTTLTCVPGVLEYK----------------GAKI 49 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-----ccC-----------CCCccccceEEEEEEC----------------CeEE
Confidence 5899999999999999999543211 110 0112333333344454 6789
Q ss_pred EEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC
Q 003165 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI 151 (843)
Q Consensus 101 ~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~ 151 (843)
+++||||+.+ +..++...++.+|++++|+|+++.. .+-..+.+.+...++
T Consensus 50 ~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~-~~~~~~~~~l~~~gi 106 (233)
T cd01896 50 QLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE-GHREILERELEGVGI 106 (233)
T ss_pred EEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch-hHHHHHHHHHHHcCc
Confidence 9999999854 3346778899999999999998632 244445555544433
No 292
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.72 E-value=2.3e-07 Score=87.96 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=81.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
++-..|-|+|.-||||||+..+|+....... .. |......++.++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i---------------~p----t~gf~Iktl~~~---------------- 58 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTI---------------SP----TLGFQIKTLEYK---------------- 58 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcccc---------------CC----ccceeeEEEEec----------------
Confidence 3345689999999999999999954331110 11 222222344554
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-ccHHHHHHHHH----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~qt~~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
++.++++|.-|...+..-...+...+|+.|.|||..+-.. .++...+..+. -.+.|++++.||.|.+
T Consensus 59 ~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 8999999999999999999999999999999999987543 33344444332 3456999999999987
No 293
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.71 E-value=6e-08 Score=95.40 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=68.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+.+++.. .... .+.+.. + .. ...+.+ +++...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~---------~~~~~~---~-~~---~~~i~~--------------~~~~~~l 49 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQ---------LESPEG---G-RF---KKEVLV--------------DGQSHLL 49 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC---------CCCCCc---c-ce---EEEEEE--------------CCEEEEE
Confidence 6999999999999999998542 1111 000100 0 00 011222 2235679
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
.++||+|..+. ...+.+|++++|+|.++--+.+.. ..+..+.. .+.|++++.||+|+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 99999999753 356789999999999986555553 32333322 356889999999974
No 294
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.70 E-value=2.7e-07 Score=98.79 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=73.6
Q ss_pred HHHHHhhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEee
Q 003165 6 AEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 6 ~~~~~~~~~~----~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
.+.|.+++.+ ..+..+|+++|..|+||||++|+|+...........+ .|.........+
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~-- 83 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTR-- 83 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEE--
Confidence 3455566542 2356799999999999999999997654322211000 011111122222
Q ss_pred cccccccccCcCCCCceEEEEEeCCCCcccHH---HHHHHhh------ccCcEEEEecCCC-cccccHHHHHHHHHc---
Q 003165 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALG--- 148 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~---e~~~~l~------~~D~ailVvda~~-gv~~qt~~~l~~~~~--- 148 (843)
.+..+++|||||..+... +....++ ..|++++|..... ......+.+++.+..
T Consensus 84 --------------~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 84 --------------AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG 149 (313)
T ss_pred --------------CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh
Confidence 278999999999886521 2222232 4788999954332 233333444443321
Q ss_pred --CCCceEEEEECCccc
Q 003165 149 --ERIRPVLTVNKMDRC 163 (843)
Q Consensus 149 --~~~p~ilviNKiD~~ 163 (843)
.-.+.|+++++.|..
T Consensus 150 ~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 150 KDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhhccEEEEEECCccC
Confidence 124688999999965
No 295
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.69 E-value=7.4e-08 Score=98.18 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
+++...++||||+|..+.. ....++.+|++|+|+|.++.-+.+.. ..|. .+. ..+.|++++.||+|+.
T Consensus 62 ~~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 62 DGVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 3457899999999987632 33467899999999999875444333 2342 222 2467899999999976
No 296
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=99.06 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=74.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.+-+|+++|-+|+|||||+++|...... .+...+| |+......+.|+ ..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpk-----Va~YaFT-----------TL~P~iG~v~yd---------------df 243 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPK-----VAHYAFT-----------TLRPHIGTVNYD---------------DF 243 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCc-----cccccee-----------eeccccceeecc---------------cc
Confidence 4678999999999999999999543322 3333333 555555555565 12
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCc---ccccH-HHHHHHHHc-----CCCceEEEEECCc
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQT-ETVLRQALG-----ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~~qt-~~~l~~~~~-----~~~p~ilviNKiD 161 (843)
..+++-|.||.+. .-....+-+..|+..++|||.+.+ ..-|. ..++..+.. ...|.++|+||||
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 3499999999652 222333444557999999999876 22222 233333321 2347889999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
.+
T Consensus 324 ~~ 325 (366)
T KOG1489|consen 324 LP 325 (366)
T ss_pred ch
Confidence 86
No 297
>COG2262 HflX GTPases [General function prediction only]
Probab=98.66 E-value=1e-07 Score=103.64 Aligned_cols=116 Identities=23% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..+..|+++|-.|+|||||+|+|....-.... .. =-|.+...-.+.+. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d----------~L------FATLdpttR~~~l~---------------~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD----------QL------FATLDPTTRRIELG---------------D 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc----------cc------cccccCceeEEEeC---------------C
Confidence 46889999999999999999999522111111 00 01444444444443 2
Q ss_pred ceEEEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCc-ccccHH---HHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEG-VCVQTE---TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~g-v~~qt~---~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.+.||-|+++ -...+......+|..+.|||+++. ...|-. .++..+....+|.|+|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 67899999999864 123455566789999999999985 223333 33444434567999999999976
No 298
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.65 E-value=3e-07 Score=95.43 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|.++|+.++||||....+..+...-.. . .-|-|++.....+.+. ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-----------~----~L~~T~~ve~~~v~~~---------------~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-----------L----RLEPTIDVEKSHVRFL---------------SFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-----------G----G-----SEEEEEEECT---------------TSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-----------c----ccCCcCCceEEEEecC---------------CCcEE
Confidence 5889999999999999988544322111 1 1133555544444433 35689
Q ss_pred EEEeCCCCcccHHH-----HHHHhhccCcEEEEecCC-CcccccH---HHHHHHHH--cCCCceEEEEECCccccccccC
Q 003165 101 NLIDSPGHVDFSSE-----VTAALRITDGALVVVDCI-EGVCVQT---ETVLRQAL--GERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 101 ~liDTPGh~df~~e-----~~~~l~~~D~ailVvda~-~gv~~qt---~~~l~~~~--~~~~p~ilviNKiD~~~~~~~~ 169 (843)
++||+||+.+|... ...-++.+++.|+|+|+. +.....- ...+..+. ..+.++-+++.|||.. .
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l----~- 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL----S- 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS------
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC----C-
Confidence 99999999988765 466679999999999998 3222211 22333333 3456777899999975 3
Q ss_pred CHHHHHHHHHHHHHHhhhhh
Q 003165 170 DGEEAYQTFSRVVENANVIM 189 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ 189 (843)
.+.-...++.+.+.+...+
T Consensus 126 -~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 126 -EDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444
No 299
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=8.8e-08 Score=94.70 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=82.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-..+|+++|.+++|||-|+.++....=.+ +.. -||.....+.... .+++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~-----------~Sk-------sTIGvef~t~t~~------------vd~k~ 62 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----------ESK-------STIGVEFATRTVN------------VDGKT 62 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCc-----------ccc-------cceeEEEEeecee------------ecCcE
Confidence 45689999999999999999994332111 111 1343322222222 35668
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.+.+||||.|.+.|..-+..+.|.+-||+||.|.+...+.+...-| +.+. ..+++++++.||+|+.
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 8999999999999998899999999999999999876555543333 2332 3467788999999986
No 300
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.63 E-value=2.5e-08 Score=84.75 Aligned_cols=71 Identities=35% Similarity=0.533 Sum_probs=58.7
Q ss_pred eeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eee
Q 003165 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLT 468 (843)
Q Consensus 393 l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~ 468 (843)
++++||+||+|++||+|++++ +.+.. +....+|.+|+.+++...++++.+.||+++++.++++++ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999876 43211 123479999999999999999999999999999999832 445 775
No 301
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1e-07 Score=92.80 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..-.+|.++|--+|||||++..| +.+.+.. ..| |+....-.+.|.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykL--k~~E~vt----------tvP-------TiGfnVE~v~yk---------------- 59 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKL--KLGEIVT----------TVP-------TIGFNVETVEYK---------------- 59 (181)
T ss_pred cceEEEEEEeccCCCceeeeEee--ccCCccc----------CCC-------ccccceeEEEEc----------------
Confidence 34467999999999999999888 3332222 122 666666666665
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-ccHH-HHHHHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~qt~-~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
+..+++||.-|+..+..-...+.+..+++|+|||+++-.. ...+ ++.+.... .+.|++++.||.|.+
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 8899999999999999999999999999999999997321 1122 22333322 356888999999998
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.61 E-value=5.3e-07 Score=98.50 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=86.2
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCC--cccccCCceEeecCcccccccC---eeEeeee---EEEEEe
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI--IAQEVAGDVRMTDTRADEAERG---ITIKSTG---ISLYYE 80 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~--i~~~~~g~~~~~d~~~~E~~rg---iTi~~~~---~~~~~~ 80 (843)
.+++......-..|+++|++++|||||++++....-. +... ....|..|..+... .| +|..... -.+...
T Consensus 7 ykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~-~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~ 84 (492)
T TIGR02836 7 YKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNE-YDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEIN 84 (492)
T ss_pred HHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccch-hHHhHHHhccCcCC-CCCCcccCCCccccCcceEEe
Confidence 3445444444558999999999999999999776211 1100 00012222222221 13 2222211 011111
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcc-------------------------cHHH----HHHHhh-ccCcEEEEe-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV- 129 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------------------f~~e----~~~~l~-~~D~ailVv- 129 (843)
-.++-..++.||||+|+.+ |... +...+. .+|.+|+|.
T Consensus 85 -----------~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtT 153 (492)
T TIGR02836 85 -----------INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTT 153 (492)
T ss_pred -----------ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEc
Confidence 0123357899999999754 2222 555666 899999999
Q ss_pred cCC------CcccccHHHHHHHHHcCCCceEEEEECCcc
Q 003165 130 DCI------EGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 130 da~------~gv~~qt~~~l~~~~~~~~p~ilviNKiD~ 162 (843)
|++ ++.....+.+...+.+.++|.++++||.|-
T Consensus 154 Dgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 154 DGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred CCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 886 456666677888889999999999999993
No 303
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.8e-07 Score=87.09 Aligned_cols=115 Identities=24% Similarity=0.202 Sum_probs=77.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..++.++|+.|+|||.|+.+++...= .|.. .+||.....+-... ..++..
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf------------kDds------sHTiGveFgSrIin------------VGgK~v 58 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF------------KDDS------SHTIGVEFGSRIVN------------VGGKTV 58 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh------------cccc------cceeeeeecceeee------------ecCcEE
Confidence 45789999999999999999965321 0100 12332222111111 234578
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
++.||||.|.+.|..-+..+.|.+-||+||.|++.--+.....-| +.....++-++++.||-|+.
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 999999999999999999999999999999999864333333333 22223445566789999986
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.60 E-value=9.2e-08 Score=94.81 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCcccH----HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC-ceEEEEECC
Q 003165 97 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKM 160 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-p~ilviNKi 160 (843)
...+.||||||..+.. ..+...+..+|++|+|+++......+....+.+...... ..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4568999999975422 447778899999999999999777665555555554444 466788885
No 305
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=85.53 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
..+|+|.+|+|||+|+-++-.. .. .|+. + .||......-..+ .++...++
T Consensus 10 kllIigDsgVGKssLl~rF~dd--tF----s~sY--i----------tTiGvDfkirTv~------------i~G~~VkL 59 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD--TF----SGSY--I----------TTIGVDFKIRTVD------------INGDRVKL 59 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc--cc----ccce--E----------EEeeeeEEEEEee------------cCCcEEEE
Confidence 4579999999999999877322 11 1211 1 1222211111111 23557899
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC---CCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~---~~p~ilviNKiD~~ 163 (843)
.|+||.|.+.|..-+....+...++++|.|.+.|-+...-.-|-+-.+. .+|.++|.||.|.+
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 9999999999999999999999999999999998766655555433333 35788999999977
No 306
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.57 E-value=1.7e-07 Score=95.21 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=79.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||+|+-++++.. ..-++.+ |+..++.. ... .++..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~-----------f~~~y~p-------tied~y~k-~~~------------v~~~~~ 51 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR-----------FVEDYDP-------TIEDSYRK-ELT------------VDGEVC 51 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc-----------cccccCC-------CccccceE-EEE------------ECCEEE
Confidence 4689999999999999999884422 1222222 22211100 000 123467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHH----HcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~----~~~~~p~ilviNKiD~~ 163 (843)
.+.|+||+|..+|...-...++.+||.++|.+.++--+.+.. .++.++ ....+|+++|.||+|+.
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 888999999999999999999999999999999885444333 222333 23457999999999987
No 307
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.5e-07 Score=102.13 Aligned_cols=107 Identities=27% Similarity=0.325 Sum_probs=86.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..-|||+|++|+|||||+.+|... ++.+.-.+..-.||+.+ ++..
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr-------------~tk~ti~~i~GPiTvvs----------------------gK~R 113 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRR-------------FTKQTIDEIRGPITVVS----------------------GKTR 113 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHH-------------HHHhhhhccCCceEEee----------------------ccee
Confidence 456789999999999999999653 22222233333466643 2577
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEE-EEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~il-viNKiD~~ 163 (843)
+|+|+.|| +=...++.-...||.++|+||+.-|..-.|.+.+..+...|.|.|+ |++.+|+.
T Consensus 114 RiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 114 RITFLECP---SDLHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEEEeCh---HHHHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 99999999 3356788888999999999999999999999999999999999887 99999986
No 308
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.49 E-value=2.4e-07 Score=85.86 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.+.++|-.++||||+++... .|-..+. .+ +.+|.-+. .+ ......+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia--~g~~~ed-mi-----------ptvGfnmr------k~--------------tkgnvti 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIA--RGQYLED-MI-----------PTVGFNMR------KV--------------TKGNVTI 67 (186)
T ss_pred eEEEEeeccCCcceEEEEEe--eccchhh-hc-----------ccccceeE------Ee--------------ccCceEE
Confidence 47899999999999998772 1111110 00 11222111 11 1135678
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-ccccHHHHHH----HHHcCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~qt~~~l~----~~~~~~~p~ilviNKiD~~ 163 (843)
-++|.||...|.....+.-|.+|+++++|||.+. --...+.-+. ...-.++|+++..||.|++
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 8999999999999999999999999999999972 1122222222 2223578999999999998
No 309
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.41 E-value=4.1e-06 Score=86.63 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=66.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|.++|..|+||||+.|.|+.....-... + ....|.........+. +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~--~------------~~~~t~~~~~~~~~~~----------------g~~ 50 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS--S------------AKSVTQECQKYSGEVD----------------GRQ 50 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T--T------------TSS--SS-EEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc--c------------cCCcccccceeeeeec----------------ceE
Confidence 479999999999999999997654322210 0 0112222222233343 789
Q ss_pred EEEEeCCCCcc-------cHHHHHHHhh----ccCcEEEEecCCCcccccHHHHHHHHHc-CC----CceEEEEECCccc
Q 003165 100 INLIDSPGHVD-------FSSEVTAALR----ITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~----~~D~ailVvda~~gv~~qt~~~l~~~~~-~~----~p~ilviNKiD~~ 163 (843)
+++|||||.-| ...++..++. ..++++||+... -++...+..++.... .+ ...+|+++..|..
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 99999999754 2334444443 468899999987 566666666554432 12 2467788888876
No 310
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2.2e-06 Score=79.60 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=76.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-++-|+|...+|||+++-+.+..+ ....+. ..-||..+...+ |. ..+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-----------Ft~afv---sTvGidFKvKTv---yr-------------~~kRi 70 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-----------FTSAFV---STVGIDFKVKTV---YR-------------SDKRI 70 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-----------ccccee---eeeeeeEEEeEe---ee-------------cccEE
Confidence 4578999999999999998873221 100000 001333332211 22 12457
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HH---HcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~---~~~~~p~ilviNKiD~~ 163 (843)
++.++||.|.+.+..-+-..+|.++|.||+.|.+..-+.....-|- ++ ...+.|+|++.||+|+.
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 8999999999999888889999999999999988643333322232 11 13467999999999986
No 311
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.36 E-value=2.2e-07 Score=86.97 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=79.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+|+++|..=+|||||+-+..... ... .+ =.|++++..+-... .++...
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk--Fn~----------kH------lsTlQASF~~kk~n------------~ed~ra 62 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK--FNC----------KH------LSTLQASFQNKKVN------------VEDCRA 62 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh--cch----------hh------HHHHHHHHhhcccc------------ccccee
Confidence 4678999999999999997764321 000 00 01333322221111 233456
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
.++||||.|.+.|...-.-+.|.+|||+||.|.++--+.|-..-| +.+....+-++||.||+|+.
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 799999999999988777888999999999999987666665555 33444445678899999986
No 312
>PRK13768 GTPase; Provisional
Probab=98.34 E-value=1.1e-06 Score=93.16 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCcccHH---H---HHHHhhc--cCcEEEEecCCCcccccHHHHHHHH-----HcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~---e---~~~~l~~--~D~ailVvda~~gv~~qt~~~l~~~-----~~~~~p~ilviNKiD~~ 163 (843)
..+.+|||||+.++.. . ..+.+.. +|++++|+|+..+..+.+....... ...++|+++++||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 4689999999876432 2 2223333 8999999999887766664333222 15688999999999987
No 313
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=3.5e-06 Score=77.74 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=75.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..|..+|-.++||||++-.|.......+-. |+.-+.-++.|. +.+
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip-------------------TvGFnvetVtyk----------------N~k 62 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTTIP-------------------TVGFNVETVTYK----------------NVK 62 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCccccc-------------------ccceeEEEEEee----------------eeE
Confidence 457889999999999999984322211111 222222344554 789
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc--ccccHHHHHHHH---HcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--VCVQTETVLRQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g--v~~qt~~~l~~~---~~~~~p~ilviNKiD~~ 163 (843)
+|++|.-|......-..++....-+.|+|+|+.+. +...-.++-+.+ .....+++++.||-|++
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 99999999999999999999999999999999864 111111222222 23345788899999998
No 314
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=91.93 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-.|+++|.+++|||||+++|.... ++ .+...++ |...-...+.|+ +.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~---se--va~y~FT-----------Tl~~VPG~l~Y~----------------ga 110 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK---SE--VADYPFT-----------TLEPVPGMLEYK----------------GA 110 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC---cc--ccccCce-----------ecccccceEeec----------------Cc
Confidence 4579999999999999999994322 22 2321111 444555566675 89
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC-----ceEEEEECCcc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-----RPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-----p~ilviNKiD~ 162 (843)
.|+|+|+||... --.++.+.+|.||.+++|+|+.+.... -..+.+.+...++ |+-+.|.|-++
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~ 185 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKES 185 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEecc
Confidence 999999999753 235688999999999999999875432 3345555555544 56666666544
No 315
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=9.9e-07 Score=84.49 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=88.8
Q ss_pred HHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh-cCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccc
Q 003165 6 AEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA-AGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (843)
Q Consensus 6 ~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~-~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
+..+.++|.+.+ -.+|.|+|.-++||||+++++=.. ++.. |. ++ +.+. --|+.....+....
T Consensus 5 ~~gl~~~~~~Ke-~y~vlIlgldnAGKttfLe~~Kt~~~~~~-----~~---l~--~~ki--~~tvgLnig~i~v~---- 67 (197)
T KOG0076|consen 5 MSGLYKYMFKKE-DYSVLILGLDNAGKTTFLEALKTDFSKAY-----GG---LN--PSKI--TPTVGLNIGTIEVC---- 67 (197)
T ss_pred HHHHHHHHhhhh-hhhheeeccccCCchhHHHHHHHHHHhhh-----cC---CC--HHHe--ecccceeecceeec----
Confidence 345677777554 358999999999999999998321 1111 10 00 0000 01333333333332
Q ss_pred ccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-----ccccHHHHHHHHHcCCCceEEEEEC
Q 003165 85 ALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----VCVQTETVLRQALGERIRPVLTVNK 159 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-----v~~qt~~~l~~~~~~~~p~ilviNK 159 (843)
...+++||--|.....+-.......|.++|+||||.+. ...+-+.+..+-...+.|+++.+||
T Consensus 68 ------------~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lank 135 (197)
T KOG0076|consen 68 ------------NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANK 135 (197)
T ss_pred ------------cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcch
Confidence 56899999999999998899999999999999999973 2233345556666789999999999
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
-|+.
T Consensus 136 qd~q 139 (197)
T KOG0076|consen 136 QDLQ 139 (197)
T ss_pred hhhh
Confidence 9987
No 316
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.30 E-value=3.6e-06 Score=92.04 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=40.9
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH--HHHHHHHcCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~--~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++.+.||||+|...-... ....+|.+++|++...|-..|.. .++..+ -++|+||+|+.
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 34789999999998732222 46789999999875444433332 233333 38999999987
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.29 E-value=1.1e-05 Score=86.70 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=76.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||-|+|..|+|||||++.|+......... ..+.......+..++......+.- ++-...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~~l~ 64 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEE--------------NGVKLN 64 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEE--------------TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEecc--------------CCcceE
Confidence 589999999999999999997643222210 001111122223344433222221 223668
Q ss_pred EEEEeCCCCcccHH-------------H-HHHHh-------------hccCcEEEEecCC-CcccccHHHHHHHHHcCCC
Q 003165 100 INLIDSPGHVDFSS-------------E-VTAAL-------------RITDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh~df~~-------------e-~~~~l-------------~~~D~ailVvda~-~gv~~qt~~~l~~~~~~~~ 151 (843)
+++|||||+.|... + ....+ ...|+|++.|+++ .|+.+.....++.+ ...+
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s~~v 143 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-SKRV 143 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-TTTS
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-cccc
Confidence 99999999765221 1 11111 1257899999986 57887777777665 5558
Q ss_pred ceEEEEECCccccccccCCHHHHHHHHHHHHHH
Q 003165 152 RPVLTVNKMDRCFLELQVDGEEAYQTFSRVVEN 184 (843)
Q Consensus 152 p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~ 184 (843)
++|-||.|.|.. ++++....-+.+.++
T Consensus 144 NvIPvIaKaD~l------t~~el~~~k~~i~~~ 170 (281)
T PF00735_consen 144 NVIPVIAKADTL------TPEELQAFKQRIRED 170 (281)
T ss_dssp EEEEEESTGGGS-------HHHHHHHHHHHHHH
T ss_pred cEEeEEeccccc------CHHHHHHHHHHHHHH
Confidence 888899999965 455554433333333
No 318
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.29 E-value=3.8e-06 Score=77.56 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=77.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+-.+|..+|--++||||++..| .++ |-...-+..|..+ ..+.+. .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL-----------~sE----D~~hltpT~GFn~----k~v~~~---------------g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQL-----------KSE----DPRHLTPTNGFNT----KKVEYD---------------G 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHH-----------ccC----ChhhccccCCcce----EEEeec---------------C
Confidence 34456899999999999999999 221 1011111123333 344444 3
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-c-HH---HHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-Q-TE---TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-q-t~---~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++|++|.-|......-...+....|+.|+|||+.+---. . .+ +++....-..+|+.++.||-|++
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 68999999999999999999999999999999998763211 1 11 22222233456899999999987
No 319
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.27 E-value=1.4e-06 Score=89.16 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=53.2
Q ss_pred ceEEEEEeCCCCcccHHH-----H-HHHhh--ccCcEEEEecCCCcccccHH--HHH---HHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSE-----V-TAALR--ITDGALVVVDCIEGVCVQTE--TVL---RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e-----~-~~~l~--~~D~ailVvda~~gv~~qt~--~~l---~~~~~~~~p~ilviNKiD~~ 163 (843)
...+.||||||+.+-... + ..++. .--+++.|||....-++.|. .++ ..+.+.++|.|++.||.|..
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS 194 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence 367899999998763221 1 11222 22356799998876666664 233 34468899999999999987
Q ss_pred cccccCCHHHHHHHHHHHHH
Q 003165 164 FLELQVDGEEAYQTFSRVVE 183 (843)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~ 183 (843)
-.++-..+..-++.+++.++
T Consensus 195 d~~fa~eWm~DfE~FqeAl~ 214 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALN 214 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555444
No 320
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.26 E-value=2.7e-06 Score=93.63 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred HHHhhhccc-CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCe---eEeeeeEEEEEeecc
Q 003165 8 GLRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGI---TIKSTGISLYYEMTD 83 (843)
Q Consensus 8 ~~~~~~~~~-~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgi---Ti~~~~~~~~~~~~~ 83 (843)
.+++.+... ....||||+|.+|+|||||+|+|..-.+ .+.| .-..|. |+.. ..+.+.
T Consensus 23 ~i~~~l~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~----~d~~----------aA~tGv~etT~~~--~~Y~~p--- 83 (376)
T PF05049_consen 23 KIREALKDIDNAPLNIAVTGESGSGKSSFINALRGLGH----EDEG----------AAPTGVVETTMEP--TPYPHP--- 83 (376)
T ss_dssp HHHHHHHHHHH--EEEEEEESTTSSHHHHHHHHTT--T----TSTT----------S--SSSHSCCTS---EEEE-S---
T ss_pred HHHHHHHHhhcCceEEEEECCCCCCHHHHHHHHhCCCC----CCcC----------cCCCCCCcCCCCC--eeCCCC---
Confidence 344444332 2345999999999999999999943211 0011 111121 2221 112221
Q ss_pred cccccccCcCCCCceEEEEEeCCCCc--ccHHHHH---HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEE
Q 003165 84 DALKSYKGERNGNEYLINLIDSPGHV--DFSSEVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVN 158 (843)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~--df~~e~~---~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviN 158 (843)
+--.+.+||.||.. +|..+.. -.+...|..|+|.+.. .......+++.+.+.++|..+|-+
T Consensus 84 ------------~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~La~~i~~~gK~fyfVRT 149 (376)
T PF05049_consen 84 ------------KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDVQLAKEIQRMGKKFYFVRT 149 (376)
T ss_dssp ------------S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHHHHHHHHHHTT-EEEEEE-
T ss_pred ------------CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhHHHHHHHHHcCCcEEEEEe
Confidence 23368999999963 4433321 1356789877766533 444555677888899999999999
Q ss_pred CCccc
Q 003165 159 KMDRC 163 (843)
Q Consensus 159 KiD~~ 163 (843)
|+|..
T Consensus 150 KvD~D 154 (376)
T PF05049_consen 150 KVDSD 154 (376)
T ss_dssp -HHHH
T ss_pred ccccc
Confidence 99984
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.24 E-value=1.7e-06 Score=78.50 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+++++|.+|+|||||+++|-.+.-...+ |. .+.|. +.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK--------------------TQ-----Ave~~----------------d~- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK--------------------TQ-----AVEFN----------------DK- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc--------------------cc-----eeecc----------------Cc-
Confidence 57899999999999999999322111100 11 12332 11
Q ss_pred EEEEeCCC----CcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPG----h~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
-.||||| |..+.......+..+|..++|-.+.++-+.-.-.. +.-...|.|-+++|.|+.
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLA 103 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEeccccc
Confidence 2589999 56666777788889999999999998644333222 223345667799999987
No 322
>PTZ00258 GTP-binding protein; Provisional
Probab=98.23 E-value=3.9e-06 Score=93.48 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=62.4
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccC
Q 003165 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKG 91 (843)
Q Consensus 13 ~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~ 91 (843)
++...+-..|+|+|.+|+|||||+++|.... ......+ +.|+......+.+.... ..+.....
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~ 78 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFP---------------FCTIDPNTARVNVPDERFDWLCKHFK 78 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCC---------------CCcccceEEEEecccchhhHHHHHcC
Confidence 3444555689999999999999999994432 2211112 23555444444443100 00000001
Q ss_pred cCCCCceEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCC
Q 003165 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~ 132 (843)
....-...+.++||||... ........++.+|++++|||+.
T Consensus 79 ~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 79 PKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1111244689999999652 4446777889999999999995
No 323
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=7.7e-06 Score=77.85 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=79.7
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccccc
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYK 90 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
+++.--++.-++.++|--|+|||||+..| +.-. .| ...| |...+.-.+..
T Consensus 12 q~LgL~kK~gKllFlGLDNAGKTTLLHML--KdDr-----l~-----qhvP-------TlHPTSE~l~I----------- 61 (193)
T KOG0077|consen 12 QFLGLYKKFGKLLFLGLDNAGKTTLLHML--KDDR-----LG-----QHVP-------TLHPTSEELSI----------- 61 (193)
T ss_pred HHHHHhccCceEEEEeecCCchhhHHHHH--cccc-----cc-----ccCC-------CcCCChHHhee-----------
Confidence 33333345668899999999999999888 1111 11 0001 22222112222
Q ss_pred CcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHH----HHHcCCCceEEEEECCccccc
Q 003165 91 GERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLR----QALGERIRPVLTVNKMDRCFL 165 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~----~~~~~~~p~ilviNKiD~~~~ 165 (843)
.+-+++-+|.-||..-..-...+...+|+++++|||-+--..+ .+..+. ...-.++|+++..||+|++
T Consensus 62 -----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p-- 134 (193)
T KOG0077|consen 62 -----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP-- 134 (193)
T ss_pred -----cCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC--
Confidence 2668889999999888878888899999999999998732222 222222 2223678999999999999
Q ss_pred cccCC
Q 003165 166 ELQVD 170 (843)
Q Consensus 166 ~~~~~ 170 (843)
++.
T Consensus 135 --~a~ 137 (193)
T KOG0077|consen 135 --YAA 137 (193)
T ss_pred --Ccc
Confidence 775
No 324
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.19 E-value=3.3e-06 Score=89.97 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=56.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccCcCCCCceEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEYLI 100 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i 100 (843)
|+|+|.+|+|||||+++|......+.. . .+.|+......+.+.... ..+.........-...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n-~---------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAAN-Y---------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcccc-c---------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 589999999999999999553321111 0 123444444444443100 00000000001113469
Q ss_pred EEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 101 ~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.++||||..+ +.......++.+|+++.|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999653 34466777899999999999863
No 325
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.19 E-value=7.4e-06 Score=69.98 Aligned_cols=71 Identities=28% Similarity=0.325 Sum_probs=55.7
Q ss_pred EEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEec
Q 003165 377 MLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 456 (843)
Q Consensus 377 va~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~g 456 (843)
.++|++++.++..|. ++++||++|+|++|+.+++.+.. . ....+|.+|+... .+++++.|||+|++.+
T Consensus 2 ~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~---~----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG---G----GVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC---c----eeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 567888887776665 99999999999999999986420 1 1236888888665 6789999999999987
Q ss_pred ccc
Q 003165 457 LDQ 459 (843)
Q Consensus 457 l~~ 459 (843)
.+.
T Consensus 70 ~~~ 72 (83)
T cd01342 70 KDK 72 (83)
T ss_pred ccc
Confidence 654
No 326
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.17 E-value=1.4e-05 Score=74.85 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=81.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeE-EEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI-SLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+.-+|.++|.-++|||+++++|+|-+..+.....- ||.-.+. ++.-+ .+-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~-------------rga 58 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD-------------RGA 58 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------CCh
Confidence 34579999999999999999999977665432111 2222111 12111 122
Q ss_pred ceEEEEEeCCCCcccHHHHH-HHhhccCcEEEEecCCCcccccHHHHHHHHH-----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVT-AALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~-~~l~~~D~ailVvda~~gv~~qt~~~l~~~~-----~~~~p~ilviNKiD~~ 163 (843)
...+.|-||.|..+.-.+.- .++..+|+.+||.|..+--+.|-.++++.-. +..+|+++..||.|+.
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 45788999999998855554 5668899999999998866666666654332 3346888999999985
No 327
>PTZ00099 rab6; Provisional
Probab=98.15 E-value=8.8e-06 Score=81.52 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=52.4
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
+...++||||||+..|.......++.+|++|+|+|+++.-+.+....| ..+. ....|+++|.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 467899999999999999899999999999999999885433333223 2222 1356778999999985
No 328
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.15 E-value=1.6e-05 Score=84.58 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=69.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-.|+++|-+++|||||+.++......| +.+.++ |+......+... ...
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKI-----adYpFT-----------TL~PnLGvV~~~---------------~~~ 207 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKI-----ADYPFT-----------TLVPNLGVVRVD---------------GGE 207 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcc-----cCCccc-----------cccCcccEEEec---------------CCC
Confidence 5578999999999999999995433322 212222 333332222222 256
Q ss_pred EEEEEeCCCCc-----------ccHHHHHHHhhccCcEEEEecCCCcc----cccHHHHHHHHHc-----CCCceEEEEE
Q 003165 99 LINLIDSPGHV-----------DFSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALG-----ERIRPVLTVN 158 (843)
Q Consensus 99 ~i~liDTPGh~-----------df~~e~~~~l~~~D~ailVvda~~gv----~~qt~~~l~~~~~-----~~~p~ilviN 158 (843)
.+.+-|.||.. +|...+++ |-..+.|||.+.-- ...-..+...+.+ ..+|.+|++|
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~N 283 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLN 283 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEe
Confidence 78999999965 46555554 67789999988521 2222333333332 3568999999
Q ss_pred CCccc
Q 003165 159 KMDRC 163 (843)
Q Consensus 159 KiD~~ 163 (843)
|||.+
T Consensus 284 KiD~~ 288 (369)
T COG0536 284 KIDLP 288 (369)
T ss_pred ccCCC
Confidence 99976
No 329
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.14 E-value=7.3e-06 Score=84.61 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=81.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...+++.|..|+|||+|++.++........ ++. +.|-|..... |. -+.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~in~----f~---------------v~~ 183 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQAINH----FH---------------VGK 183 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCccceeeee----ee---------------ccc
Confidence 356899999999999999999764322111 100 2233332221 11 266
Q ss_pred EEEEEeCCCC----------cccHHHHHHHhh---ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGH----------VDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh----------~df~~e~~~~l~---~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.++|.||+ .|+..-+..++- ..=.+.+++|++.++++-....+.++.+.++|..+|+||||+.
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 8899999993 355555555553 3445789999999999999999999999999999999999986
No 330
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.14 E-value=3.3e-07 Score=96.05 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=36.4
Q ss_pred EEEEEeCCCCcccHHH------HHHHhh--ccCcEEEEecCCCcccccHH-HH----HHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSE------VTAALR--ITDGALVVVDCIEGVCVQTE-TV----LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e------~~~~l~--~~D~ailVvda~~gv~~qt~-~~----l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.|+||||+.+|... ....+. ..=++++++|+..-..+... .. +....+.++|.|.++||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 7899999999876543 333333 23468899998753333222 11 112235789999999999987
No 331
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.13 E-value=1.7e-06 Score=82.75 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=79.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+++|+|..++||||++.+.+ .|+..+.. .++.-.|+. | |.|-+ ...
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkdy-kktIgvdfl--e--rqi~v-----------------------~~E 67 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDY-KKTIGVDFL--E--RQIKV-----------------------LIE 67 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--cccccccc-ccccchhhh--h--HHHHh-----------------------hHH
Confidence 355689999999999999999983 23333311 110111211 1 11111 112
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH---HHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~---~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.+|||.|..+|..-+-.+.|.|.+.+||++.++-.+.....-|+ +.....+|.+++-||||+.
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 567789999999999999999999999999999988754443333343 2335678999999999986
No 332
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.11 E-value=8.6e-06 Score=89.68 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=58.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (843)
.+|+|+|.+|+|||||+++|......+.+ . .+.|+......+.+.... ..+...+.....-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n-y---------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN-Y---------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc-c---------------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 36999999999999999999553311111 0 123544444344433100 001111111111234
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.+.|+||||..+ ........++.||++++|||+.+
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 699999999653 33456778899999999999963
No 333
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.11 E-value=4.2e-05 Score=88.58 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=65.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|.+|+||||++|+|+......... . ..+ |.........+. +.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss-~-------------~~~-TTr~~ei~~~id----------------G~ 166 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA-F-------------GMG-TTSVQEIEGLVQ----------------GV 166 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC-C-------------CCC-ceEEEEEEEEEC----------------Cc
Confidence 4689999999999999999997654332221 0 011 221111222222 67
Q ss_pred EEEEEeCCCCcccH------HH----HHHHhh--ccCcEEEEecCCCccc-ccHHHHHHHHH---cCC--CceEEEEECC
Q 003165 99 LINLIDSPGHVDFS------SE----VTAALR--ITDGALVVVDCIEGVC-VQTETVLRQAL---GER--IRPVLTVNKM 160 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e----~~~~l~--~~D~ailVvda~~gv~-~qt~~~l~~~~---~~~--~p~ilviNKi 160 (843)
.+++|||||..+.. .+ +...+. ..|++|+|+....--. .+....++.+. -.. ...||+++..
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThg 246 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHA 246 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCC
Confidence 89999999987642 22 222333 3688777775432111 12223333331 111 2578899999
Q ss_pred ccc
Q 003165 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|..
T Consensus 247 D~l 249 (763)
T TIGR00993 247 ASA 249 (763)
T ss_pred ccC
Confidence 986
No 334
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=2.5e-05 Score=83.13 Aligned_cols=153 Identities=14% Similarity=0.199 Sum_probs=92.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc-------eEeecCcccccccCeeEeeeeEEEEEee----cccccc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-------VRMTDTRADEAERGITIKSTGISLYYEM----TDDALK 87 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-------~~~~d~~~~E~~rgiTi~~~~~~~~~~~----~~~~~~ 87 (843)
-.-|-++|+-..||||+++.|+...=. ....|. ..+|--..++.-.|-+.....- ..|.. .+.-+.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp--g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~-~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP--GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAK-KPFRGLNKFGNAFLN 134 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC--ccccCCCCCcceeEEEEecCcccccCCceeeecCC-CchhhhhhhHHHHHH
Confidence 345889999999999999999864211 111221 1122222222222322211100 00100 000001
Q ss_pred cccCcC--CCCceEEEEEeCCCC-----------cccHHHHHHHhhccCcEEEEecCCC-cccccHHHHHHHHHcCCCce
Q 003165 88 SYKGER--NGNEYLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRP 153 (843)
Q Consensus 88 ~~~~~~--~~~~~~i~liDTPGh-----------~df~~e~~~~l~~~D~ailVvda~~-gv~~qt~~~l~~~~~~~~p~ 153 (843)
.+.|.. +.--..|+||||||. -||.+-...-+..||.++|+.|+.. .++..+++++.++....-++
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 111211 112347999999995 3788888889999999999999975 68889999999887777788
Q ss_pred EEEEECCccccccccCCHHHHHHHHHH
Q 003165 154 VLTVNKMDRCFLELQVDGEEAYQTFSR 180 (843)
Q Consensus 154 ilviNKiD~~~~~~~~~~~~~~~~~~~ 180 (843)
-||+||.|.+ ++++..+..-.
T Consensus 215 RVVLNKADqV------dtqqLmRVyGA 235 (532)
T KOG1954|consen 215 RVVLNKADQV------DTQQLMRVYGA 235 (532)
T ss_pred EEEecccccc------CHHHHHHHHHH
Confidence 8999999955 55554443333
No 335
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=3.1e-05 Score=71.25 Aligned_cols=116 Identities=21% Similarity=0.136 Sum_probs=73.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-|.+..|+|..|+|||.|+-++..+.=..+ - .+||.....+-..+ ..+..
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmad------------c------phtigvefgtriie------------vsgqk 59 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMAD------------C------PHTIGVEFGTRIIE------------VSGQK 59 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhc------------C------CcccceecceeEEE------------ecCcE
Confidence 366788999999999999988844321100 0 11222211111111 12346
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHcCCCc---eEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERIR---PVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~~~~p---~ilviNKiD~~ 163 (843)
.++.||||.|.+.|..-+.+..|.+-||+.|.|.+.-.+.....-| ..+...-.| ++++.||.|+.
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 7899999999999999999999999999999998763322222222 122222223 45688999986
No 336
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.05 E-value=1.1e-05 Score=82.99 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=68.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCce-EeecCcccccccCeeE---eeeeEEEEEeecccccccc
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRADEAERGITI---KSTGISLYYEMTDDALKSY 89 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~-~~~d~~~~E~~rgiTi---~~~~~~~~~~~~~~~~~~~ 89 (843)
...+++|+++|+.|+|||||+++|+...+...+. ..+.. .-.|....+ +.|..+ ...... ... .......
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic-~~~--~~~~~~~ 94 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKEC-HLD--AHMVAHA 94 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcc-cCC--hHHHHHH
Confidence 3469999999999999999999999874321110 00110 011221111 222211 111100 000 0000000
Q ss_pred cCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
-......+..+.||+|.|...... ......+..+.|+|+..+...+. +.....+.+.++++||+|+.
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLA 161 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcc
Confidence 000111245788999999321111 11123455678999887543222 22233456789999999987
No 337
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=9.7e-06 Score=89.84 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=75.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCc-ccccCCceEeecCc---cccccc------CeeEeeeeEEEEEeeccccccc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTR---ADEAER------GITIKSTGISLYYEMTDDALKS 88 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~d~~---~~E~~r------giTi~~~~~~~~~~~~~~~~~~ 88 (843)
-.+++++|+.|+||||++.+|....-.. .....+ ....|.. ..|+-+ |+.+......-. +..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~-------l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-------LQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCccc-------HHH
Confidence 4689999999999999999997642110 000011 1112221 112211 332211100000 000
Q ss_pred ccCcCCCCceEEEEEeCCCCc---ccHHHHHHHhhccCc---EEEEecCCCcccccHHHHHHHHHcCCCce-------EE
Q 003165 89 YKGERNGNEYLINLIDSPGHV---DFSSEVTAALRITDG---ALVVVDCIEGVCVQTETVLRQALGERIRP-------VL 155 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~---df~~e~~~~l~~~D~---ailVvda~~gv~~qt~~~l~~~~~~~~p~-------il 155 (843)
.-....++.+.||||||.. ++..+....+..++. .+||++|+.+...-+..++.+....++|. =+
T Consensus 209 --~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 209 --ALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred --HHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEE
Confidence 0011235688999999976 455556666655544 49999999987776666666654443332 36
Q ss_pred EEECCccc
Q 003165 156 TVNKMDRC 163 (843)
Q Consensus 156 viNKiD~~ 163 (843)
+++|+|-.
T Consensus 287 I~TKlDEt 294 (374)
T PRK14722 287 ILTKLDEA 294 (374)
T ss_pred EEeccccC
Confidence 78999965
No 338
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.98 E-value=2e-05 Score=85.88 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=39.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||... .....+..+|.++++.+...|-.- ..+ ... -..+|.++++||+|+.
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el--~~~-~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDL--QGI-KAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHH--HHH-HHH-HhhhccEEEEEccccc
Confidence 478999999999652 223457788998888654433211 111 111 2357889999999987
No 339
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.97 E-value=1.9e-05 Score=86.35 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=29.8
Q ss_pred CceEEEEEeCCCCc----ccH---HHHHHHhhccCcEEEEecCCC
Q 003165 96 NEYLINLIDSPGHV----DFS---SEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 96 ~~~~i~liDTPGh~----df~---~e~~~~l~~~D~ailVvda~~ 133 (843)
+...++++||||.. .+. ......++.||++++|+|+..
T Consensus 67 ~~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 67 RYVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CcceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 34679999999973 333 356667999999999999975
No 340
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.96 E-value=4.8e-06 Score=81.14 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=26.7
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.++....++ +.++++|++|+|||||+|+|+..
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 344444444344 78999999999999999999775
No 341
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.94 E-value=2.7e-05 Score=87.65 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=56.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe--eccccccccc------C
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE--MTDDALKSYK------G 91 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~--~~~~~~~~~~------~ 91 (843)
.+|+|+|.+|+|||||+++|....-.+.. .. +.|+.......... +.+..+...+ +
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~-y~---------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIAN-YP---------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccC-CC---------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 37999999999999999999543221111 01 12333222221110 0000000000 0
Q ss_pred cCCCCceEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 92 ERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.....++++||||..+ ........++.||++++|||+..
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 0112246789999999642 34467778999999999999974
No 342
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.94 E-value=0.00015 Score=78.37 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=86.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.-..||-++|..|.||||+++.|+... +... .+ +-+..+.-...++.|......+.- ++-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~--l~~~-~~---~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~ 80 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTS--LVDE-TE---IDDIRAEGTSPTLEIKITKAELEE--------------DGF 80 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhh--ccCC-CC---ccCcccccCCcceEEEeeeeeeec--------------CCe
Confidence 345699999999999999999998872 1110 00 111111113334444443333321 223
Q ss_pred ceEEEEEeCCCCcccHHH--------------HHHHh-------hc-------cCcEEEEecCC-CcccccHHHHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSE--------------VTAAL-------RI-------TDGALVVVDCI-EGVCVQTETVLRQAL 147 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e--------------~~~~l-------~~-------~D~ailVvda~-~gv~~qt~~~l~~~~ 147 (843)
...+|+|||||..||... -..++ |. .++|++-+-.+ +|+.+...+.++.+
T Consensus 81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l- 159 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL- 159 (373)
T ss_pred EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH-
Confidence 567999999999876431 11111 11 46788877765 68888888877665
Q ss_pred cCCCceEEEEECCccccccccCC-HHHHHHHHHHHHHHhh
Q 003165 148 GERIRPVLTVNKMDRCFLELQVD-GEEAYQTFSRVVENAN 186 (843)
Q Consensus 148 ~~~~p~ilviNKiD~~~~~~~~~-~~~~~~~~~~~~~~~~ 186 (843)
...+.+|=||-|.|.. -.+ ..++.+++++.++.-|
T Consensus 160 s~~vNlIPVI~KaD~l----T~~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 160 SKRVNLIPVIAKADTL----TDDELAEFKERIREDLEQYN 195 (373)
T ss_pred hcccCeeeeeeccccC----CHHHHHHHHHHHHHHHHHhC
Confidence 4457778899999965 221 2344444555555433
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.87 E-value=3.8e-05 Score=85.02 Aligned_cols=114 Identities=24% Similarity=0.273 Sum_probs=67.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+.|++.++|-+|+||||+.+.+....-.+. .| -.|..+- ..++.|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq----------pY-------aFTTksL~vGH~dy---------------- 212 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ----------PY-------AFTTKLLLVGHLDY---------------- 212 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC----------Cc-------ccccchhhhhhhhh----------------
Confidence 4689999999999999998877722111111 11 1122211 123333
Q ss_pred CceEEEEEeCCCCccc--------HHHHHHHhhcc-CcEEEEecCCC--cccccHH-HHHHHHH--cCCCceEEEEECCc
Q 003165 96 NEYLINLIDSPGHVDF--------SSEVTAALRIT-DGALVVVDCIE--GVCVQTE-TVLRQAL--GERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df--------~~e~~~~l~~~-D~ailVvda~~--gv~~qt~-~~l~~~~--~~~~p~ilviNKiD 161 (843)
+-..|.+|||||.-|- ....++||... -+++++.|.++ |.+.... .++..+. =.+.|.|+|+||+|
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccc
Confidence 3568999999997652 22344555443 45678899876 3322222 1222221 24678999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 293 ~m 294 (620)
T KOG1490|consen 293 AM 294 (620)
T ss_pred cc
Confidence 76
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.80 E-value=3.4e-05 Score=75.70 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
..+|+++|.+|+|||||+|+|+......
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~ 129 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK 129 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee
Confidence 4579999999999999999997654433
No 345
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=3.7e-05 Score=72.43 Aligned_cols=67 Identities=28% Similarity=0.218 Sum_probs=49.6
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HH----HHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~----~~~~~~p~ilviNKiD~~ 163 (843)
..++.||||.|.+.|.+.+..-.|.|-|.+|++|.+..-+.-...-| .+ |.-++--+|++.||.|++
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 45788999999999999999999999999999998763222222223 22 223333477899999987
No 346
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.79 E-value=7.6e-05 Score=72.49 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=39.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD 161 (843)
.++.+.||||||.. ......++.||-+++|+....+ ....+. .......--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~---D~y~~~-k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG---DDIQAI-KAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch---hHHHHh-hhhHhhhcCEEEEeCCC
Confidence 37889999999954 4445699999999999876632 122221 11233344588999998
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.79 E-value=0.00011 Score=73.18 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=40.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHH----h--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAA----L--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~----l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||...+..+.... . ...|++++|+|+..+-... ..++++....+ ..-+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 35678899999986443333322 2 2389999999996543222 23333333344 345788999976
No 348
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.76 E-value=0.0004 Score=69.60 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=53.3
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.+.+|||||... ..+..++..+|.+++|+.....-.......++.+.+.+.|..+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478899999997643 466778899999999999886545566777777777888888999999964
No 349
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00034 Score=76.24 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=75.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.|+-++|..|.|||||+|.|+...-. +... .+..+.+..+..++......+.- ++-..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~------~~~~-~~~~~~~~~~t~~i~~~~~~iee--------------~g~~l 79 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLS------GNRE-VPGASERIKETVEIESTKVEIEE--------------NGVKL 79 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhcc------CCcc-cCCcccCccccceeeeeeeeecC--------------CCeEE
Confidence 368999999999999999999776211 1100 11122222223333333222211 22356
Q ss_pred EEEEEeCCCCcccHHH--------------HHHHh-----------h--ccCcEEEEecCC-CcccccHHHHHHHHHcCC
Q 003165 99 LINLIDSPGHVDFSSE--------------VTAAL-----------R--ITDGALVVVDCI-EGVCVQTETVLRQALGER 150 (843)
Q Consensus 99 ~i~liDTPGh~df~~e--------------~~~~l-----------~--~~D~ailVvda~-~gv~~qt~~~l~~~~~~~ 150 (843)
.+|+|||||..|+... -..++ . -.++|++-|..+ +|+.+......+.+ ..+
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l-~~~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL-SKK 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-hcc
Confidence 7899999998775421 11111 1 356888888865 57888887776654 455
Q ss_pred CceEEEEECCccc
Q 003165 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNKiD~~ 163 (843)
+.+|-||-|.|..
T Consensus 159 vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 159 VNLIPVIAKADTL 171 (366)
T ss_pred ccccceeeccccC
Confidence 7788899999954
No 350
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=5.7e-05 Score=70.20 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=78.1
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccc
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDAL 86 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
..++.+.... +--+|-++|-.|+||||+.-+| ..|..... .| |+.-....+.|
T Consensus 7 s~f~~L~g~e-~e~rililgldGaGkttIlyrl--qvgevvtt----------kP-------tigfnve~v~y------- 59 (182)
T KOG0072|consen 7 SLFKALQGPE-REMRILILGLDGAGKTTILYRL--QVGEVVTT----------KP-------TIGFNVETVPY------- 59 (182)
T ss_pred HHHHHhcCCc-cceEEEEeeccCCCeeEEEEEc--ccCccccc----------CC-------CCCcCcccccc-------
Confidence 3455555543 3345789999999999988777 22221110 00 23222233333
Q ss_pred ccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccccc--HHHHHHHHHc---CCCceEEEEECCc
Q 003165 87 KSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ--TETVLRQALG---ERIRPVLTVNKMD 161 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~q--t~~~l~~~~~---~~~p~ilviNKiD 161 (843)
++.+++++|.-|.-....-...+....|.+|+|||..+--... -.++...+.+ .+..+++|.||+|
T Consensus 60 ---------KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD 130 (182)
T KOG0072|consen 60 ---------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQD 130 (182)
T ss_pred ---------ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEecccc
Confidence 4788999999999998888999999999999999998732221 1222222222 2345778999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 131 ~~ 132 (182)
T KOG0072|consen 131 YS 132 (182)
T ss_pred ch
Confidence 87
No 351
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.69 E-value=3e-05 Score=80.42 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhc---CC------ccc--ccCCceEeecCc---ccccccCeeEeee
Q 003165 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GI------IAQ--EVAGDVRMTDTR---ADEAERGITIKST 73 (843)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~---g~------i~~--~~~g~~~~~d~~---~~E~~rgiTi~~~ 73 (843)
.++.+.....+...|+|-|++|+|||||+++|.... |. ++. ...|....-|.. ......|+-|.+.
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSM 97 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeec
Confidence 445555555567789999999999999999997642 11 111 011111111111 1112223333322
Q ss_pred eEEEEEeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH--HHHHHHHcCCC
Q 003165 74 GISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERI 151 (843)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~--~~l~~~~~~~~ 151 (843)
...=....-.........-.+.-++.+.||.|-|--.-.-+ -...+|..++|+-...|-..|.. -+++.+
T Consensus 98 atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia----- 169 (266)
T PF03308_consen 98 ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIA----- 169 (266)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH------
T ss_pred CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhc-----
Confidence 11000000000000000011223788999999995533222 25789999999988877666664 344443
Q ss_pred ceEEEEECCccccccccCCHHHHHHHHHHHHH
Q 003165 152 RPVLTVNKMDRCFLELQVDGEEAYQTFSRVVE 183 (843)
Q Consensus 152 p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 183 (843)
=++||||.|+. +++ .....++..+.
T Consensus 170 -Di~vVNKaD~~----gA~--~~~~~l~~~l~ 194 (266)
T PF03308_consen 170 -DIFVVNKADRP----GAD--RTVRDLRSMLH 194 (266)
T ss_dssp -SEEEEE--SHH----HHH--HHHHHHHHHHH
T ss_pred -cEEEEeCCChH----HHH--HHHHHHHHHHh
Confidence 38999999987 553 34444444443
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.69 E-value=0.0002 Score=80.77 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=40.4
Q ss_pred CceEEEEEeCCCCcccH----HHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~----~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||..... .++....+ ..|-++||+||.-|-.. ....+...+.--+--+++||+|..
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 36789999999976443 34333332 35788999999876333 122222222212455899999964
No 353
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.67 E-value=3.7e-05 Score=70.18 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=54.4
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
+++..++.+|||.|++.|.+-+..+.|.+|+.+++.|...--+...-..| .++. ++.+.+.++.||+|+.
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 45678999999999999999999999999999999998865444443333 2222 3446677899999974
No 354
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.67 E-value=0.00034 Score=60.75 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=51.9
Q ss_pred CeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE
Q 003165 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 375 plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
||.+.|..++..+ .|. +..+||.+|++++||.|+++..+ . ..+|..|.. ...++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEE----CCeECCEECCCCEEEE
Confidence 5666777776655 565 88999999999999999986422 1 268888864 3478999999999985
Q ss_pred --eccc
Q 003165 455 --VGLD 458 (843)
Q Consensus 455 --~gl~ 458 (843)
.+++
T Consensus 66 ~l~~~~ 71 (83)
T cd03698 66 KLKGID 71 (83)
T ss_pred EECCCC
Confidence 3544
No 355
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.67 E-value=0.00016 Score=81.94 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+=+|+...=.-.- .++++ -|||-... .......
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~~V-----P~rl~--------~i~IPadv-------------------tPe~vpt 58 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVDAV-----PRRLP--------RILIPADV-------------------TPENVPT 58 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccccc-----cccCC--------ccccCCcc-------------------CcCcCce
Confidence 5899999999999999999664321100 01111 13332111 1123458
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCC-----cccccHHHHHHHHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-----gv~~qt~~~l~~~~--~~~~p~ilviNKiD~~ 163 (843)
.|+||+...+-...+..-++.||.+++|.++++ +++..-..++++.. ..++|+|+|.||.|..
T Consensus 59 ~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 59 SIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred EEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 999999888777788899999999999997765 44444444455543 2567999999999986
No 356
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.67 E-value=0.00015 Score=68.88 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCccc---ccCCceEeecCc--ccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTR--ADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~d~~--~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
....++|..-+|||+|+..+ ..|.... ...| .|+. -.|.+ .
T Consensus 9 frlivigdstvgkssll~~f--t~gkfaelsdptvg----vdffarlie~~----------------------------p 54 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFFARLIELR----------------------------P 54 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccccCCCccc----hHHHHHHHhcC----------------------------C
Confidence 45789999999999999887 3333222 1122 1111 11111 2
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc--CC---Cc-eEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ER---IR-PVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~--~~---~p-~ilviNKiD~~ 163 (843)
+...++.||||.|.+.|.+-+.++.|.+-|+++|.|.+.--+..-.+.|-.-.+ .+ .+ ..+|..|.|+.
T Consensus 55 g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 235688999999999999999999999999999999987544444444522111 11 22 33588999986
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.66 E-value=0.0015 Score=66.17 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=69.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
--.||-++|.+|.|||||++.|... +...+ .+ .|+. .|.-+. |+....++-... .++-.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s-~v~~~--s~----~~~~-~~p~pk-T~eik~~thvie------------E~gVk 103 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKS-HVSDS--SS----SDNS-AEPIPK-TTEIKSITHVIE------------EKGVK 103 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHH-HHhhc--cC----CCcc-cCcccc-eEEEEeeeeeee------------ecceE
Confidence 3579999999999999999999543 22221 11 1111 122222 222222222222 12235
Q ss_pred eEEEEEeCCCCcccHH-------------H-HHHHh-------h---c----cCcEEEEecCCC-cccccHHHHHHHHHc
Q 003165 98 YLINLIDSPGHVDFSS-------------E-VTAAL-------R---I----TDGALVVVDCIE-GVCVQTETVLRQALG 148 (843)
Q Consensus 98 ~~i~liDTPGh~df~~-------------e-~~~~l-------~---~----~D~ailVvda~~-gv~~qt~~~l~~~~~ 148 (843)
.++|+|||||+.|++. + -..+| | . ..++++-|..+. ...+-..+.++.+-
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt- 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT- 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh-
Confidence 6899999999877432 1 11122 1 1 457888787663 45566666665432
Q ss_pred CCCceEEEEECCccc
Q 003165 149 ERIRPVLTVNKMDRC 163 (843)
Q Consensus 149 ~~~p~ilviNKiD~~ 163 (843)
+-+.+|-||-|.|-.
T Consensus 183 ~vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 183 EVVNVVPVIAKADTL 197 (336)
T ss_pred hhheeeeeEeecccc
Confidence 224556689999976
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.64 E-value=0.00033 Score=76.66 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEe--ecCcc---------cccccCeeEeeeeEEEEEeecccc--
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRA---------DEAERGITIKSTGISLYYEMTDDA-- 85 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~d~~~---------~E~~rgiTi~~~~~~~~~~~~~~~-- 85 (843)
...|+++|+.|+||||++..|....... .+++.. .|... ....+|+.+... ... .++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~----g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~----~~~-~dpa~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ----GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ----KEG-ADPASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc----CCeEEEEecCccchhhHHHHHHHHHHcCceEEEe----CCC-CCHHHH
Confidence 4688999999999999999996643211 122222 22211 122334332111 000 0000
Q ss_pred -cccccCcCCCCceEEEEEeCCCCcccH----HHHHHHhh--------ccCcEEEEecCCCcccccHHHHHHHHHcC--C
Q 003165 86 -LKSYKGERNGNEYLINLIDSPGHVDFS----SEVTAALR--------ITDGALVVVDCIEGVCVQTETVLRQALGE--R 150 (843)
Q Consensus 86 -~~~~~~~~~~~~~~i~liDTPGh~df~----~e~~~~l~--------~~D~ailVvda~~gv~~qt~~~l~~~~~~--~ 150 (843)
...+. .....++.+.||||||..... .++....+ ..+..++|+||+.|-.... ++... .
T Consensus 185 v~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~~~ 258 (318)
T PRK10416 185 AFDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFHEA 258 (318)
T ss_pred HHHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHHhh
Confidence 00000 112246789999999976432 34443333 3567899999997532222 22221 1
Q ss_pred C-ceEEEEECCccc
Q 003165 151 I-RPVLTVNKMDRC 163 (843)
Q Consensus 151 ~-p~ilviNKiD~~ 163 (843)
. +.-+++||+|..
T Consensus 259 ~~~~giIlTKlD~t 272 (318)
T PRK10416 259 VGLTGIILTKLDGT 272 (318)
T ss_pred CCCCEEEEECCCCC
Confidence 2 345899999954
No 359
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.64 E-value=9.9e-05 Score=73.54 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+++++|.+|+|||||+++|+...
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcc
Confidence 579999999999999999996544
No 360
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.61 E-value=0.00026 Score=69.57 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCcccHHH--------HHHHhhccCcEEEEecCCCcccc--cHHHHHHHHHcCCCceEEEEECCcc
Q 003165 97 EYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCV--QTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~--qt~~~l~~~~~~~~p~ilviNKiD~ 162 (843)
...+.+|||||..+-..- ...+.-..|+++.|||+...... .......|+... =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 456788999998642221 22344568999999998753321 112233444433 3789999995
No 361
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.59 E-value=0.00046 Score=61.11 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeE
Q 003165 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (843)
Q Consensus 373 ~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv 452 (843)
+.||.+.|..++..+..|. +..+||.+|+++.||+++++..+ . ..+|.+|... ..++++|.|||.|
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~----~-----~~~V~sI~~~----~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG----V-----TGEVKSVEMH----HEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC----c-----EEEEEEEEEC----CcCcCEECCCCEE
Confidence 4588888888887666665 88999999999999999987422 1 2688888743 4678999999999
Q ss_pred EEe--ccccccccce-eeecC
Q 003165 453 AMV--GLDQFITKNA-TLTNE 470 (843)
Q Consensus 453 ~i~--gl~~~~~~tg-Tl~~~ 470 (843)
++. +++....+.| .||+.
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~ 88 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDS 88 (91)
T ss_pred EEEECCCCHHHcCCcCEEccC
Confidence 874 4433323455 55554
No 362
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00018 Score=70.25 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=79.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++.++++|..|.||||..++.+. |.... ...-|+....-.+.+. .+.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt--geFe~----------------~y~at~Gv~~~pl~f~------------tn~g~ 58 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT--GEFEK----------------TYPATLGVEVHPLLFD------------TNRGQ 58 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc--cccee----------------cccCcceeEEeeeeee------------cccCc
Confidence 489999999999999999999843 22111 1112444443334333 11224
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH--HH-HcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR--QA-LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~--~~-~~~~~p~ilviNKiD~~ 163 (843)
.+++.+||.|.+.|.+.-..+.-.+-||++.+|...-++-+...-|. .+ ...++|++++.||.|-.
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 78999999999999877777777788999999988655444433332 11 24568999999999954
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.57 E-value=0.00039 Score=74.53 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCC-ceEe--ecCc-c--cc------cccCeeEeeeeEEEEEeeccc-
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRM--TDTR-A--DE------AERGITIKSTGISLYYEMTDD- 84 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~--~d~~-~--~E------~~rgiTi~~~~~~~~~~~~~~- 84 (843)
..+.|+++|+.|+||||++..|..... + .| ++.. .|.. . .| ..+|+.+... ... .++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~----~~~-~dp~ 140 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---K--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ----KEG-ADPA 140 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC----CCC-CCHH
Confidence 457899999999999999999965431 1 12 1222 2321 0 11 2233322100 000 000
Q ss_pred c--cccccCcCCCCceEEEEEeCCCCcccHHHHH----H---Hhh-----ccCcEEEEecCCCcccccHHHHHHHHHcCC
Q 003165 85 A--LKSYKGERNGNEYLINLIDSPGHVDFSSEVT----A---ALR-----ITDGALVVVDCIEGVCVQTETVLRQALGER 150 (843)
Q Consensus 85 ~--~~~~~~~~~~~~~~i~liDTPGh~df~~e~~----~---~l~-----~~D~ailVvda~~gv~~qt~~~l~~~~~~~ 150 (843)
. ...+. ....+++.+.||||||......... . ... .+|..+||+|+..|-. +........+ .
T Consensus 141 ~~~~~~l~-~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~-~ 216 (272)
T TIGR00064 141 AVAFDAIQ-KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNE-A 216 (272)
T ss_pred HHHHHHHH-HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHh-h
Confidence 0 00000 0112467899999999875433322 1 222 3899999999975422 2111111111 1
Q ss_pred C-ceEEEEECCccc
Q 003165 151 I-RPVLTVNKMDRC 163 (843)
Q Consensus 151 ~-p~ilviNKiD~~ 163 (843)
. ..-+++||+|-.
T Consensus 217 ~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 217 VGLTGIILTKLDGT 230 (272)
T ss_pred CCCCEEEEEccCCC
Confidence 2 345799999964
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.52 E-value=0.00015 Score=71.04 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...+++++|++|+|||||+++|+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc
Confidence 457899999999999999999976543
No 365
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.51 E-value=0.00028 Score=71.05 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=75.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-|+|.++|..|+|||++-..+......-+. +..|-||+....++.|- ++-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~---------------~rlg~tidveHsh~Rfl---------------Gnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDT---------------RRLGATIDVEHSHVRFL---------------GNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhh---------------hccCCcceeeehhhhhh---------------hhh
Confidence 478999999999999988766532221111 11244776666666554 356
Q ss_pred EEEEEeCCCCcccHHHHHH-----HhhccCcEEEEecCCCcccccH----HHHHHHHHcC--CCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQT----ETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~-----~l~~~D~ailVvda~~gv~~qt----~~~l~~~~~~--~~p~ilviNKiD~~ 163 (843)
.+|++||-|...|...-.+ ..+..+..+.|.|+..--.... ...++...+. ..++.+++.|||+.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 8999999999887765443 5678899999999875322222 2223322222 23466799999998
No 366
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.50 E-value=0.00021 Score=81.17 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCcccHHHH------HHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCce-EEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRP-VLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~------~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~-ilviNKiD~~ 163 (843)
+.+.||||||........ ..++..+|.+++|+|+..|- ..+.++... .+++ -+++||+|..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999977654432 23455689999999998862 222333332 2443 3789999953
No 367
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00021 Score=78.81 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=66.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCc---ccccccCe--eEeeeeEEEEEeecccccc-cccC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR---ADEAERGI--TIKSTGISLYYEMTDDALK-SYKG 91 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~---~~E~~rgi--Ti~~~~~~~~~~~~~~~~~-~~~~ 91 (843)
..+.|+++|+.|+||||++..|......-.. ..+ ....|.. ..|+-+.. ... +.+....+...+. .+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVg-lI~aDt~RiaAvEQLk~yae~lg---ipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVG-FITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEE-EEecCCcchHHHHHHHHHhhhcC---CcEEecCCHHHHHHHHHH
Confidence 3478999999999999999999653210000 011 1112221 11111110 010 1111000011111 0111
Q ss_pred cCCCCceEEEEEeCCCCccc----HHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCC-Cc-eEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df----~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~-~p-~ilviNKiD~~ 163 (843)
..+..++.+.||||||.... ..++...+. ..|..+||+||+-+ ...+..++...+ .+ --++++|+|-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk----~~d~~~i~~~F~~~~idglI~TKLDET 390 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK----SKDMIEIITNFKDIHIDGIVFTKFDET 390 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC----hHHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 11112468899999997543 344444443 24678999998643 222223333222 33 33789999965
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.47 E-value=0.00018 Score=69.32 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++++|.+|+|||||+++|+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999654
No 369
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.45 E-value=0.00026 Score=72.07 Aligned_cols=66 Identities=23% Similarity=0.207 Sum_probs=40.0
Q ss_pred CceEEEEEeCCCCcccHH----HHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSS----EVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~----e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+++.+.||||||+..... ++..-+. ..+-++||+|++.+-.... .+.......+.. -++++|+|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 356789999999765543 3332222 3577899999988643222 333333333443 4569999965
No 370
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.41 E-value=0.00038 Score=72.52 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.++.-|+|+|..++|||||+|+|+....... +.+.. ...-+||-+.... + ..+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~--------~~~~~-~~~T~gi~~~~~~----~-------------~~~~ 58 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFD--------VMDTS-QQTTKGIWMWSVP----F-------------KLGK 58 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeE--------ecCCC-CCCccceEEEecc----c-------------cCCC
Confidence 4677899999999999999999966521110 11110 1112233322111 0 0123
Q ss_pred ceEEEEEeCCCCccc------HHHHHHHhhc--cCcEEEEecCCC
Q 003165 97 EYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df------~~e~~~~l~~--~D~ailVvda~~ 133 (843)
+..+.++||||..+- ......++.. +|..|+.++...
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999997653 2234455555 899998888754
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.40 E-value=0.00028 Score=71.60 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.+++++|.+|+|||||+|+|+...
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998754
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=97.39 E-value=0.00019 Score=79.43 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++++|.+|+|||||+|+|+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 479999999999999999976543
No 373
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.38 E-value=0.00044 Score=72.84 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=81.7
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhc---CC------cccc--cCCceEeecCcccc---cccCeeEee
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GI------IAQE--VAGDVRMTDTRADE---AERGITIKS 72 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~---g~------i~~~--~~g~~~~~d~~~~E---~~rgiTi~~ 72 (843)
+-+..++...-+...|+|-|.+|+|||||+++|.... |. ++.. ..|.+-.-|..... ...|+-|.+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 3345555555556679999999999999999996542 21 1110 11111111111000 001111111
Q ss_pred eeEEEEEeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH--HHHHHHcCC
Q 003165 73 TGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGER 150 (843)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~--~l~~~~~~~ 150 (843)
....=....-.......-.-++.-++.+.||.|-|--.-.-+ -...+|..++|.=..-|-..|..+ +++.+
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---- 191 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---- 191 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh----
Confidence 100000000000000000112334788999999995433322 235789999888777776666653 33333
Q ss_pred CceEEEEECCccccccccCCHHHHHHHHHHHHH
Q 003165 151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVE 183 (843)
Q Consensus 151 ~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 183 (843)
=|+||||.|+. ++. .....++..+.
T Consensus 192 --Di~vINKaD~~----~A~--~a~r~l~~al~ 216 (323)
T COG1703 192 --DIIVINKADRK----GAE--KAARELRSALD 216 (323)
T ss_pred --heeeEeccChh----hHH--HHHHHHHHHHH
Confidence 38999999987 553 34444444443
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.38 E-value=0.00028 Score=74.52 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+|+|+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 468999999999999999998653
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00021 Score=79.17 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++|+|++|+|||||+|+|+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999976543
No 376
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0019 Score=74.66 Aligned_cols=63 Identities=25% Similarity=0.264 Sum_probs=45.1
Q ss_pred EEEEEeCCCCc---ccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHcCCCceE-EEEECCccc
Q 003165 99 LINLIDSPGHV---DFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~---df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+||.||.. .+...+..-.-.+|..|+|+.|-.-. .+++ ..+..+.+. +|.| |+.||+|..
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl-t~sek~Ff~~vs~~-KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL-TLSEKQFFHKVSEE-KPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh-HHHHHHHHHHhhcc-CCcEEEEechhhhh
Confidence 68899999953 56677777778899999999876533 3444 344444444 7755 577899976
No 377
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.00086 Score=76.93 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCCcccHHHHH------HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~------~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++.+.||||||......... .+.. ....+||+++..+..... .+++.... ..+.-+++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~-eii~~f~~-~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLD-EVVRRFAH-AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHH-HHHHHHHh-hCCeEEEEecCcCc
Confidence 57899999999754332211 1222 245688899876533332 23333222 23556899999964
No 378
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.31 E-value=0.00056 Score=66.92 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
....+++++|.+++|||||+++|..
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999999964
No 379
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.31 E-value=0.00045 Score=77.28 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+++.++|.+|+|||||+|+|+....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999987543
No 380
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.28 E-value=0.00059 Score=69.75 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=36.1
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCce--EEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~--ilviNKiD~~ 163 (843)
.....+|+|-|.. ...... -..+|++|+|+|+.+|...+.. ...++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcc
Confidence 3466789999931 111111 1236899999999987653221 1123344 8899999987
No 381
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.28 E-value=0.0025 Score=63.53 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=48.3
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
.+.+|||||..+. .+..++..+|.+|+|+++...-...+...++.+...+.+ ..+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6899999986544 567788999999999998876555666666666665555 45799999865
No 382
>PRK14974 cell division protein FtsY; Provisional
Probab=97.27 E-value=0.0007 Score=74.47 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCcc----cHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcC--CC-ceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGE--RI-RPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d----f~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~-p~ilviNKiD~~ 163 (843)
++.+.||||||... +..++..-.+ ..|..+||+|+..|- ..++++... .+ .--+++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 56799999999764 3444433322 468899999997652 222333222 12 345789999964
No 383
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.25 E-value=0.00066 Score=73.14 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++++|.+|+|||||+|+|...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999654
No 384
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0005 Score=75.73 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.|+++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 385
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.23 E-value=0.0003 Score=74.84 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+..+++|++|+|||||+|+|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3679999999999999999965
No 386
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.23 E-value=0.00027 Score=70.88 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=70.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+++|+|...+|||.|+-.. .++....... .++.|+.. +.+... +++..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~--t~~~fp~~yv--PTVFdnys-------------~~v~V~-------------dg~~v 53 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISY--TTNAFPEEYV--PTVFDNYS-------------ANVTVD-------------DGKPV 53 (198)
T ss_pred eeEEEEECCCCcCceEEEEEe--ccCcCccccc--CeEEccce-------------EEEEec-------------CCCEE
Confidence 357899999999999998555 2222211100 01112111 111110 25677
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHH-HHHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
.+.||||.|.+||..-..-+.+.+|.+++.++.+..-+... ..-| ..+. ..++|+|+|.+|.|+.
T Consensus 54 ~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 54 ELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 89999999999998744457789999988888665322221 1111 1111 2568999999999975
No 387
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.21 E-value=0.00056 Score=74.17 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+++++|.+|+|||||+|+|....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997543
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.20 E-value=0.00045 Score=74.82 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+++|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 679999999999999999997643
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=97.19 E-value=0.0013 Score=74.79 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=37.5
Q ss_pred CceEEEEEeCCCCccc----HHHHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHc--CCCce-EEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df----~~e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~--~~~p~-ilviNKiD~~ 163 (843)
.++.+.||||||.... ..++.... ...|.+++|+|+..| | ...+++.. ..+++ -+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 4678999999996533 33322222 245788999998654 2 22223322 23443 3788999943
No 390
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.18 E-value=0.0028 Score=60.84 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCceEEEEECCccccccccCCHHHHH
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~ilviNKiD~~~~~~~~~~~~~~ 175 (843)
+.+.++|||+.. ......++..+|.+++|++....-...+...++.+... ..+..+++|+++.. .+.++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-----~~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP-----KEGKKVF 117 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-----HHHHHHH
Confidence 678999999865 34456889999999999998754444445555554332 34566899999843 2234444
Q ss_pred HHHHHHHH
Q 003165 176 QTFSRVVE 183 (843)
Q Consensus 176 ~~~~~~~~ 183 (843)
+++.+..+
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 44554443
No 391
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.16 E-value=0.00097 Score=70.53 Aligned_cols=115 Identities=23% Similarity=0.193 Sum_probs=72.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
....|+++|-.|+|||||+++|. .+....+... .. |.+...-.... +.+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT-~Aal~p~drL--FA-------------TLDpT~h~a~L---------------psg 225 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRL--FA-------------TLDPTLHSAHL---------------PSG 225 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHH-hhhcCccchh--he-------------eccchhhhccC---------------CCC
Confidence 35679999999999999999996 3333322100 01 22211111111 236
Q ss_pred eEEEEEeCCCCcc-c-------HHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCCce-------EEEEECCc
Q 003165 98 YLINLIDSPGHVD-F-------SSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRP-------VLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~d-f-------~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~p~-------ilviNKiD 161 (843)
..+.+.||-|+.. . ...+..-+..+|..+-|+|.++.. ..|-..++.-+...++|. +=|=||+|
T Consensus 226 ~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 226 NFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred cEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 6788999999642 1 123344456789999999999864 456667877777777751 22567777
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 306 ~e 307 (410)
T KOG0410|consen 306 YE 307 (410)
T ss_pred cc
Confidence 54
No 392
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00091 Score=72.90 Aligned_cols=98 Identities=23% Similarity=0.292 Sum_probs=60.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEee-ccccccc-ccCcCCCCc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEM-TDDALKS-YKGERNGNE 97 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 97 (843)
.+++|+|-+|+|||||.++|......+.+ ..+ .||+.......... .-..+.. ..|...-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aN-----YPF-----------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~ 66 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIAN-----YPF-----------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRP 66 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccC-----CCc-----------ccccCCeeEEecCchHHHHHHHhcCCCCcEEe
Confidence 46899999999999999999655422211 111 14443333322221 0000111 122233345
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.|+|.+|.+. .-.....-+|.+|+++.||||.+
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 6789999999753 56667788999999999999984
No 393
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.13 E-value=0.00084 Score=66.85 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++++|.+|+|||||+++|+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 394
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.12 E-value=0.00081 Score=73.95 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=40.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..++.|+|-+|+|||||+|+|+....+.+...+ |+|-....+.+ +.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P---------------G~Tk~~q~i~~-------------------~~ 177 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP---------------GTTKGIQWIKL-------------------DD 177 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC---------------ceecceEEEEc-------------------CC
Confidence 356999999999999999999777665444333 44554333322 34
Q ss_pred EEEEEeCCCCc
Q 003165 99 LINLIDSPGHV 109 (843)
Q Consensus 99 ~i~liDTPGh~ 109 (843)
.+.|+||||..
T Consensus 178 ~i~LlDtPGii 188 (322)
T COG1161 178 GIYLLDTPGII 188 (322)
T ss_pred CeEEecCCCcC
Confidence 58999999954
No 395
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.12 E-value=0.00068 Score=76.96 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=37.7
Q ss_pred CceEEEEEeCCCCcccHHHHHHH------hhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~------l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviNKiD~~ 163 (843)
.++.+.||||||........... ....|.++||+|+..|- ......+.. ...+++ =+++||+|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f-~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTF-NERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHH-HhhCCCCEEEEeCccCc
Confidence 45778999999965433222221 22468899999997541 222222221 223443 3689999943
No 396
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.10 E-value=0.0046 Score=53.51 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=47.4
Q ss_pred CeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEE
Q 003165 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 375 plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
||.+.|..++.. .|. +..+||.+|++++||.+++...+ . ..+|.+|.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~--~g~-vv~G~v~~G~i~~G~~v~i~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKD--MGT-VVLGKVESGTIKKGDKLLVMPNK-----T----QVEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEc--CCE-EEEEEEeeeEEecCCEEEEeCCC-----c----EEEEEEEEE----CCEECCEECCCCEEEE
Confidence 445555555543 254 88999999999999999986422 1 267888764 2478999999999988
Q ss_pred e
Q 003165 455 V 455 (843)
Q Consensus 455 ~ 455 (843)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 4
No 397
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.06 E-value=0.003 Score=69.03 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=83.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC-----CcccccCCceEee--cCcccccccCeeEeeeeEEEEEeecc-cccccccC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG-----IIAQEVAGDVRMT--DTRADEAERGITIKSTGISLYYEMTD-DALKSYKG 91 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g-----~i~~~~~g~~~~~--d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~ 91 (843)
+...|-|--|||||||++.|+.+.. .|.+ ..|+..+- +.....-+.=..+...++.+...... ..+..+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVN-EfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVN-EFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEe-cCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 4567889999999999999998754 1111 13332111 11111111122333333333322100 11111222
Q ss_pred cCCCCceEEEEEeCCCCccc-------HH-HHHHHhhccCcEEEEecCCCcccccH---HHHHHHHHcCCCceEEEEECC
Q 003165 92 ERNGNEYLINLIDSPGHVDF-------SS-EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df-------~~-e~~~~l~~~D~ailVvda~~gv~~qt---~~~l~~~~~~~~p~ilviNKi 160 (843)
..+ .....+|-|-|..+= .. ......-..|++|-||||........ .....|+... =+|++||.
T Consensus 81 -~~~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~ 155 (323)
T COG0523 81 -RRD-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKT 155 (323)
T ss_pred -ccC-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecc
Confidence 122 256778999997652 22 22223345689999999987554332 2333444332 37899999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhhhh
Q 003165 161 DRCFLELQVDGEEAYQTFSRVVENANVI 188 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (843)
|+. .. ++ .+.++..+.++|..
T Consensus 156 Dlv----~~--~~-l~~l~~~l~~lnp~ 176 (323)
T COG0523 156 DLV----DA--EE-LEALEARLRKLNPR 176 (323)
T ss_pred cCC----CH--HH-HHHHHHHHHHhCCC
Confidence 987 43 33 55666666666644
No 398
>PRK13796 GTPase YqeH; Provisional
Probab=97.05 E-value=0.00099 Score=74.63 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+++.++|.+|+|||||+|+|+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 4689999999999999999998653
No 399
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.00 E-value=0.0011 Score=63.74 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCceEEEEECCccc
Q 003165 112 SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 112 ~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~ilviNKiD~~ 163 (843)
.+++..++..+|++++|+|+.++...+...+.+.+... ++|+++++||+|+.
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 35788999999999999999998888877777766655 78999999999975
No 400
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.99 E-value=0.0021 Score=71.12 Aligned_cols=98 Identities=22% Similarity=0.202 Sum_probs=59.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC-CcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccCcCCCCc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNE 97 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (843)
.+++|+|.+++|||||.++|..... .+.. + -+ .|+......+.+.... ..+..+....+.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~-------y-pf--------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN-------P-PF--------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC-------C-CC--------CCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 5789999999999999999954432 2111 0 00 1233332223332110 00111111222234
Q ss_pred eEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.++|.||... +......-+|.+|+.+.|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 5789999999754 55678889999999999999964
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=96.87 E-value=0.0014 Score=71.53 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++++|++|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 402
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.85 E-value=0.0022 Score=68.64 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+..|.|+|.+|+|||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999875
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.85 E-value=0.0015 Score=73.69 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+++|+.|+||||++..|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999988654
No 404
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=96.74 E-value=0.012 Score=51.51 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=43.6
Q ss_pred CCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 387 SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 387 ~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
+..|. +..+||.+|++++||.++++..+. + +....+|..|.. ...++++|.|||.+++.
T Consensus 12 ~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~ 70 (87)
T cd03694 12 PGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--G---SFRPVTVKSIHR----NRSPVRVVRAGQSASLA 70 (87)
T ss_pred CCcce-EEEEEEecCEEeCCCEEEECCCCC--C---CEeEEEEEEEEE----CCeECCEECCCCEEEEE
Confidence 45565 889999999999999999864210 1 112368888764 46778999999999874
No 405
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.72 E-value=0.012 Score=53.71 Aligned_cols=59 Identities=17% Similarity=0.045 Sum_probs=42.7
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC----ceEEEEEC
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI----RPVLTVNK 159 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~----p~ilviNK 159 (843)
.+.++|||+..+. ....++..+|.+++|++....-...+...++.+.+.+. +..+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6789999997654 45678899999999999887555555566655554443 45578885
No 406
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.72 E-value=0.0033 Score=64.17 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=58.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-.|+++|-+.+|||||+..+........ + ..++ |...-..-+.|+ +..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA----~-yeFT-----------TLtcIpGvi~y~----------------ga~ 110 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAA----S-YEFT-----------TLTCIPGVIHYN----------------GAN 110 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhh----c-eeee-----------EEEeecceEEec----------------Cce
Confidence 4699999999999999998844332211 1 1111 333333344554 789
Q ss_pred EEEEeCCCCccc-------HHHHHHHhhccCcEEEEecCCCc
Q 003165 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 134 (843)
Q Consensus 100 i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~g 134 (843)
|.++|.||...= -.++++..|-||.++.|+||+.+
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 999999997642 33577788999999999999874
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.71 E-value=0.0035 Score=71.46 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCCcccH----HHHHHHhh---ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~~~l~---~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++.+.||||||+..+. .++...+. .-+-+.+|++++.+.. ....+++.....+ +--++++|+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~-~l~~~~~~f~~~~-~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE-DLKDIYKHFSRLP-LDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH-HHHHHHHHhCCCC-CCEEEEeccccc
Confidence 5788999999986543 23333333 2235689999875421 2223333322222 224789999964
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.69 E-value=0.0013 Score=66.06 Aligned_cols=82 Identities=17% Similarity=0.121 Sum_probs=44.2
Q ss_pred ceEEEEEeCCCCcccHHH-----HHHHhhccCcEEEEecCCCcc-cccHH-HHHHHHHcCCCceEEEEECCccccccccC
Q 003165 97 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGV-CVQTE-TVLRQALGERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e-----~~~~l~~~D~ailVvda~~gv-~~qt~-~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (843)
.....||-|.|..+-..- .....-..+.+|.|||+..-. ..... .+..|+. .-=++++||+|+. .
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~---~ADvIvlnK~D~~----~- 155 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA---FADVIVLNKIDLV----S- 155 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC---T-SEEEEE-GGGH----H-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch---hcCEEEEeccccC----C-
Confidence 346678999997654333 222233468899999995521 11111 2223332 3348999999977 2
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 003165 170 DGEEAYQTFSRVVENANV 187 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (843)
.++..+++++.+.++|.
T Consensus 156 -~~~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 156 -DEQKIERVREMIRELNP 172 (178)
T ss_dssp -HH--HHHHHHHHHHH-T
T ss_pred -hhhHHHHHHHHHHHHCC
Confidence 22233566666666654
No 409
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.68 E-value=0.004 Score=66.45 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=37.5
Q ss_pred ceEEEEEeCCCCcccH----HHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCC-Cc-eEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~-~p-~ilviNKiD~~ 163 (843)
++.+.||||||..... .++...++ ..|-.+||+||+-+- ..+..++..++ ++ --++++|+|-.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~----~d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH----HHHHHHHHHhCCCCCCEEEEEeecCC
Confidence 5788999999987443 33333333 246689999987431 22222333322 22 34789999965
No 410
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0017 Score=72.71 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=37.3
Q ss_pred CceEEEEEeCCCCcccHH----HHHHHhhc-----cCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSS----EVTAALRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~----e~~~~l~~-----~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
.++.+.||||||+..... ++..-++. ..-.+||+||+.|.... ..+.+.- ..++ -=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 467889999999764322 33333332 22578999998763222 2222221 2233 34789999964
No 411
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0036 Score=69.43 Aligned_cols=151 Identities=18% Similarity=0.192 Sum_probs=76.3
Q ss_pred HHHHhhhcc-c-------CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeec-Ccc--cccccCeeEeeeeE
Q 003165 7 EGLRRIMDF-K-------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD-TRA--DEAERGITIKSTGI 75 (843)
Q Consensus 7 ~~~~~~~~~-~-------~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d-~~~--~E~~rgiTi~~~~~ 75 (843)
+.|.+++.. . ...-.|-++|--|+||||.+..|-.+... .....+-+ ..| ++| -||-+...-....-
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllV-aaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLV-AADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEE-ecccCChHHHHHHHHHHHHcCCc
Confidence 455666662 1 22456788999999999999999654322 11001100 111 111 11111111111111
Q ss_pred EEEEeeccccc---ccccCcCCCCceEEEEEeCCCCccc----HHHHH--HHhhccCcEEEEecCCCcccccHHHHHHHH
Q 003165 76 SLYYEMTDDAL---KSYKGERNGNEYLINLIDSPGHVDF----SSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQA 146 (843)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~~~~~~~~i~liDTPGh~df----~~e~~--~~l~~~D~ailVvda~~gv~~qt~~~l~~~ 146 (843)
.|.......++ +..-.......+.+.||||.|.... ..|+. ...-.-|=+++|+||.-| |...-...+
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~a 234 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKA 234 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHH
Confidence 11111000000 1111112234578999999996543 33332 233345889999999876 544333444
Q ss_pred HcCCCceE-EEEECCcc
Q 003165 147 LGERIRPV-LTVNKMDR 162 (843)
Q Consensus 147 ~~~~~p~i-lviNKiD~ 162 (843)
..+.+++- ++++|+|-
T Consensus 235 F~e~l~itGvIlTKlDG 251 (451)
T COG0541 235 FNEALGITGVILTKLDG 251 (451)
T ss_pred HhhhcCCceEEEEcccC
Confidence 45567765 78999994
No 412
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.64 E-value=0.0021 Score=62.93 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHhhccCcEEEEecCCCcccccHHHHHHHHHc--CCCceEEEEECCccc
Q 003165 115 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 115 ~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~--~~~p~ilviNKiD~~ 163 (843)
+..++..+|.+++|+|+.++...+...+.+.+.. .++|+++++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 4678999999999999998776667666666544 348999999999985
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.57 E-value=0.0058 Score=70.21 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.++++|+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 357899999999999999999753
No 414
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.56 E-value=0.014 Score=52.64 Aligned_cols=80 Identities=26% Similarity=0.243 Sum_probs=51.5
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCCcccccCC-ceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 22 MSVIA-HVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 22 i~iiG-~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|++.| ..|+||||++-.|...... .| ++...|..+ .+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~-----------------------------------~~d 41 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDP-----------------------------------QYD 41 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCC-----------------------------------CCC
Confidence 56666 5799999999988654321 12 122222222 146
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL 143 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l 143 (843)
+.++|||+..+- ....++..+|.+++++++...-.......+
T Consensus 42 ~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~s~~~~~~~~ 83 (104)
T cd02042 42 YIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPLDLDGLEKLL 83 (104)
T ss_pred EEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHHHHHHHHHHH
Confidence 789999997643 445888999999999998754333333443
No 415
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.55 E-value=0.0036 Score=61.15 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 114 EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 114 e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.....++.+|++++|+|+.++...+...+.+.+...+.|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 34556677999999999998877777767666666788999999999975
No 416
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.54 E-value=0.0064 Score=65.04 Aligned_cols=107 Identities=19% Similarity=0.247 Sum_probs=65.0
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccc
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSY 89 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~ 89 (843)
-+|....+-..++|+|.+++||||+.++|....-. ++...+ .||+.....+...+.. ..++.+
T Consensus 12 ~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~-----~~NfPF-----------~TIdPn~a~V~v~d~Rfd~l~~~ 75 (391)
T KOG1491|consen 12 VLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-----AANFPF-----------CTIDPNEARVEVPDSRFDLLCPI 75 (391)
T ss_pred ccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCC-----ccCCCc-----------ceeccccceeecCchHHHHHHHh
Confidence 35565556678999999999999999999443211 111111 1444443333222110 011112
Q ss_pred cCcCCCCceEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 90 KGERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
+.......-.+++.|..|.+. .-....+-+|.+|+.+-||+|.+
T Consensus 76 Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 76 YGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 222223355799999999653 45556778899999999999875
No 417
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.54 E-value=0.0055 Score=60.83 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=50.0
Q ss_pred CceEEEEEeCCCCcccHHHHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
..+.+.|+|||+..+ ......+ ..+|.+++|+....--...+...++.+.+.+.+.+ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 468899999999753 3344343 68999999998876555666777788888888866 689999854
No 418
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.51 E-value=0.014 Score=63.94 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCC----cccccCCceEeecCcccccc--cCeeEeeeeEEEEEeecccc---ccc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGI----IAQEVAGDVRMTDTRADEAE--RGITIKSTGISLYYEMTDDA---LKS 88 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~----i~~~~~g~~~~~d~~~~E~~--rgiTi~~~~~~~~~~~~~~~---~~~ 88 (843)
++.-..|.|-.|||||||+++|+....- +-..+.|... .|..-.+.. .-+++..+++.+... +.. +..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~-iD~~ll~~~~~~v~eL~~GCiCCs~~--~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS-VDDQLIGDRATQIKTLTNGCICCSRS--NELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCcc-ccHHHHhCcCceEEEECCCEEEEccC--chHHHHHHH
Confidence 4566789999999999999999975321 1111244321 121111110 012232233222211 111 111
Q ss_pred ccCcCC--CCceEEEEEeCCCCcccHHHHHHHh---------hccCcEEEEecCCCccccc--HHHHHHHHHcCCCceEE
Q 003165 89 YKGERN--GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVL 155 (843)
Q Consensus 89 ~~~~~~--~~~~~i~liDTPGh~df~~e~~~~l---------~~~D~ailVvda~~gv~~q--t~~~l~~~~~~~~p~il 155 (843)
+..... .......+|.|-|..+-..- ...+ -..|++|.|||+..+.... ......|+.. -=+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~~i-~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~I 155 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPGPI-IQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRI 155 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHHHH-HHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEE
Confidence 111101 11345678999998874322 2222 1358999999998643211 1122233332 2388
Q ss_pred EEECCccc
Q 003165 156 TVNKMDRC 163 (843)
Q Consensus 156 viNKiD~~ 163 (843)
++||+|+.
T Consensus 156 vlnK~Dl~ 163 (318)
T PRK11537 156 LLTKTDVA 163 (318)
T ss_pred EEeccccC
Confidence 99999977
No 419
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.48 E-value=0.0084 Score=56.76 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|....|||||.-....... ++ .-++..|+-.--..+++. +-..
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~--de------------~~~q~~GvN~mdkt~~i~----------------~t~I 69 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEY--DE------------EYTQTLGVNFMDKTVSIR----------------GTDI 69 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchh--HH------------HHHHHhCccceeeEEEec----------------ceEE
Confidence 35799999999999999876632211 00 111222322211111111 1145
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHcCCC--ceEEEEECCcccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERI--RPVLTVNKMDRCF 164 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~~~~--p~ilviNKiD~~~ 164 (843)
.+.|+|.-|..+|.....-|-..+-++++++|-+..-+-....-| +||...+. -+|++.+|-|..+
T Consensus 70 sfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 70 SFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred EEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 678999999999998888777788888999998875544444444 67777766 3678999999863
No 420
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0057 Score=68.64 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred CceEEEEEeCCCCccc----HHHHHHHhhcc--C-cEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df----~~e~~~~l~~~--D-~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||.... ..++...+..+ + -.+||+||+.|..... .++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 4678999999996532 23444444433 3 4789999988733222 3333322111 234789999964
No 421
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.44 E-value=0.014 Score=51.11 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=42.7
Q ss_pred CCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 387 SDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 387 ~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
+..|. +..+||.+|+++.||.+.+++.+. +. ..+|.+|.. ...++++|.|||-+++.
T Consensus 12 ~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 12 PGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVL 68 (87)
T ss_pred CCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEE
Confidence 44554 789999999999999999865311 11 257888763 35678999999999885
No 422
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.0024 Score=76.70 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 357899999999999999999753
No 423
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.41 E-value=0.0036 Score=62.48 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=43.4
Q ss_pred ceEEEEEeCCCC------cccHHHHHHHhhccC---cEEEEecCCCcccccHH------HHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGH------VDFSSEVTAALRITD---GALVVVDCIEGVCVQTE------TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh------~df~~e~~~~l~~~D---~ailVvda~~gv~~qt~------~~l~~~~~~~~p~ilviNKiD 161 (843)
.-.+.+.||||+ ..........+..-+ ++++++|+.--+ .-|+ ..+.......+|.|=++.|||
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHINVLSKMD 175 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchhhhhHHH
Confidence 345678999995 455667777776643 678888875421 1222 122333456789999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 176 Ll 177 (273)
T KOG1534|consen 176 LL 177 (273)
T ss_pred Hh
Confidence 87
No 424
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.39 E-value=0.018 Score=63.85 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.-..|.|-.|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3455788999999999999999975
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.37 E-value=0.0059 Score=62.36 Aligned_cols=65 Identities=26% Similarity=0.285 Sum_probs=45.8
Q ss_pred CceEEEEEeC-CCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC-ceEEEEECCccc
Q 003165 96 NEYLINLIDS-PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDT-PGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-p~ilviNKiD~~ 163 (843)
+.+.+.++|| .|.+-|..- ..+.+|.+|+|+|.+.---...+++-+.+.+.++ ++.+++||+|..
T Consensus 132 ~~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 4567888888 455556533 3457899999999876434445566677778884 556799999943
No 426
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.33 E-value=0.01 Score=62.17 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=44.3
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHH------HcCCCceEEEEECCc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA------LGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~------~~~~~p~ilviNKiD 161 (843)
+.+.+.||||||+.+ ..+..++..||.+|+.+..+.--...+...+... ...++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999875 5577889999999988877642222222332221 234667779999987
No 427
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.33 E-value=0.0082 Score=66.04 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=52.7
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-----------ccccHHHHHHHHHc----CCCceEEEEECC
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKM 160 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-----------v~~qt~~~l~~~~~----~~~p~ilviNKi 160 (843)
++..+.++|+.|..............++++++|||.++- -...+...++.+.. .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 378899999999999988899999999999999999862 12223334443332 467999999999
Q ss_pred ccc
Q 003165 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 976
No 428
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.32 E-value=0.029 Score=57.10 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003165 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (843)
+..+.||.+.|+-.- .-...+.|=++.|=..|.++|+..|..+-..|+..+.|.++-+.+|++...|.+..++|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 667888887776431 23345555577888999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEee
Q 003165 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
+..+ ...++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7654 5889999999999999999999999987653
No 429
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.26 E-value=0.012 Score=62.34 Aligned_cols=64 Identities=27% Similarity=0.280 Sum_probs=43.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc-cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...+|-|+|-+|+|||||+|++........+. ..| .+-|+|+..+.......
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~~---------------- 194 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRISH---------------- 194 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEecc----------------
Confidence 45699999999999999999996543322211 122 24578887775333222
Q ss_pred ceEEEEEeCCCC
Q 003165 97 EYLINLIDSPGH 108 (843)
Q Consensus 97 ~~~i~liDTPGh 108 (843)
.-.+.++||||.
T Consensus 195 rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 RPPVYLIDTPGI 206 (335)
T ss_pred CCceEEecCCCc
Confidence 456899999994
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.26 E-value=0.0084 Score=66.41 Aligned_cols=132 Identities=15% Similarity=0.182 Sum_probs=68.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcc-cccCCceEeecCcc---ccccc------CeeEeeeeEEEEEeecccccc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRA---DEAER------GITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~d~~~---~E~~r------giTi~~~~~~~~~~~~~~~~~ 87 (843)
+.|.|+++|+.|+||||.+..|-....... +...| .-.+|++. .||-+ |+++......-.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~------- 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELA------- 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHH-------
Confidence 378999999999999999999965443111 11122 11233221 12211 22222111000000
Q ss_pred cccCcCCCCceEEEEEeCCCCccc----HHHHHHHhhcc--CcEEEEecCCCcccccHHHHHHHHHcCCC-ce-EEEEEC
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDF----SSEVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGERI-RP-VLTVNK 159 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df----~~e~~~~l~~~--D~ailVvda~~gv~~qt~~~l~~~~~~~~-p~-ilviNK 159 (843)
..-..-.++.+.||||.|+.-. ..++...+..+ .-.-||++++. +.+.+-.....++. |+ =++++|
T Consensus 274 --~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~I~TK 347 (407)
T COG1419 274 --EAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGLIFTK 347 (407)
T ss_pred --HHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCcceeEEEc
Confidence 0001123668999999997643 34444444444 34568888764 33333333333333 32 267899
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
+|-.
T Consensus 348 lDET 351 (407)
T COG1419 348 LDET 351 (407)
T ss_pred cccc
Confidence 9965
No 431
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.22 E-value=0.025 Score=48.96 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=44.8
Q ss_pred EEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 380 VSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 380 VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|..++..+..|. +..+||.+|++++|+++.++..+ . ..+|.+|.. ...++++|.|||-+++.
T Consensus 5 i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~-----~----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 5 IDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG-----E----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC-----c----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 333333344554 88999999999999999976422 1 257888864 35678999999999884
No 432
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.21 E-value=0.024 Score=51.22 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=57.7
Q ss_pred CCCeEEEEEEeeecC--------CCCcceeeeeeEeeEEecCCEEEEcCCCCC--CCCcc-ccceeeeceEEEEecCcee
Q 003165 373 NGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVSTGLKVRIMGPNYV--PGEKK-DLYVKSVQRTVIWMGKKQE 441 (843)
Q Consensus 373 ~~plva~VfK~~~~~--------~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~--~~~~~-~~~~~kv~~l~~~~g~~~~ 441 (843)
+.|+.++|...+.-. -+|. ++=++|.+|.|+.||++-+...-.. .++.. .....+|..|+. ...
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~~ 77 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----ENN 77 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cCc
Confidence 456777777776533 3455 8999999999999999976411000 00000 112346666653 556
Q ss_pred eeCcccCCCeEEE-eccccccccceee
Q 003165 442 TVEDVPCGNTVAM-VGLDQFITKNATL 467 (843)
Q Consensus 442 ~v~~a~AGdIv~i-~gl~~~~~~tgTl 467 (843)
.+++|.||+.++| ++|+..+++...|
T Consensus 78 ~l~~a~pGgliGvgT~Ldpsltk~D~l 104 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLDPTLTKADRL 104 (113)
T ss_pred cccEEeCCCeEEEccccCcccccccee
Confidence 7999999999988 5677766665433
No 433
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.20 E-value=0.0053 Score=66.18 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCCc-ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~-df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|||. ....++...+..+|.+++|+||.++.......+.+.+ .+.|+++|+||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 8886 4677899999999999999999987766665555544 367999999999975
No 434
>PRK11568 hypothetical protein; Provisional
Probab=96.19 E-value=0.039 Score=56.20 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003165 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (843)
+..+.||.+.++-.- .-...+.|=++.|=..|.++|+.+|..+-..|...+.|+++-+.+|.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 677888888776431 23345555577889999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEee
Q 003165 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
+..+ ...++..+|..+.-.|...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7654 5788999999999999999999999987654
No 435
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.15 E-value=0.014 Score=64.76 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=53.0
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-----------ccccHHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-----------v~~qt~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.++|..|...+..-.......++++|+|||.++= -...+...++.+.. .+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 67899999999999998999999999999999999861 12233444554443 4579999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 76
No 436
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.14 E-value=0.0055 Score=61.00 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCCc-ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~-df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|||. ....++..++..+|.+++|+|+.++.......++... .+.|+++++||+|+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 7774 4677888999999999999999987766555554443 357899999999975
No 437
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.06 E-value=0.036 Score=47.82 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.8
Q ss_pred eeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 393 l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
...+||.+|+++.||+|+++..+ . ..+|..|.. +..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG-----K----TSRVKSIET----FDGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC-----C----eEEEEEEEE----CCcEeCEEcCCCEEEEE
Confidence 68999999999999999986422 1 257888864 35678999999999884
No 438
>PRK13695 putative NTPase; Provisional
Probab=95.90 E-value=0.016 Score=57.78 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=30.5
Q ss_pred hccCcEEEEec---CCCcccccHHHHHHHHHcCCCceEEEEECC
Q 003165 120 RITDGALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 120 ~~~D~ailVvd---a~~gv~~qt~~~l~~~~~~~~p~ilviNKi 160 (843)
..+| ++++| ..+....+....+..+.+.+.|+++++||-
T Consensus 95 ~~~~--~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEAD--VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCC--EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 3445 47899 667777777888888888899999999984
No 439
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.89 E-value=0.02 Score=73.78 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=28.6
Q ss_pred hccCcEEEEecCCCcccccHH---H---H-------HHHHHcCCCceEEEEECCccc
Q 003165 120 RITDGALVVVDCIEGVCVQTE---T---V-------LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 120 ~~~D~ailVvda~~gv~~qt~---~---~-------l~~~~~~~~p~ilviNKiD~~ 163 (843)
+-.||+|++||+.+=...... . . +......++|+-|+++|||+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 347999999999863321111 1 1 112234567999999999976
No 440
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.70 E-value=0.065 Score=46.57 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=43.7
Q ss_pred CCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 388 DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 388 ~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
..|. ++.+||-+|+|++|+.+.+++.+ +..++-+|..|.. ...++++|.+|+-|.+.
T Consensus 13 ~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 13 KVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKR----FKDDVKEVKKGYECGIT 69 (84)
T ss_pred CCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEE----cCcccCEECCCCEEEEE
Confidence 3455 89999999999999999998532 1123357777774 36779999999999885
No 441
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.56 E-value=0.0099 Score=64.46 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~ 53 (843)
.....|+++|-+|+||||++|.|-.+.-.-....+|+
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE 341 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE 341 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc
Confidence 3456899999999999999999965443333333554
No 442
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.52 E-value=0.095 Score=55.18 Aligned_cols=64 Identities=30% Similarity=0.282 Sum_probs=40.7
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH--cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~--~~~~p~ilviNKiD~~ 163 (843)
+.+.+||||+. +...+..++..||.+++++....--..... .+.+... ....+.-+++|+.|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 37899999995 445677899999999999987531111122 1212222 1233456899999854
No 443
>PRK01889 GTPase RsgA; Reviewed
Probab=95.49 E-value=0.015 Score=64.88 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..++++|.+|+|||||++.|+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 5799999999999999999986544
No 444
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.44 E-value=0.013 Score=63.54 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=45.1
Q ss_pred CCCCc-ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 105 SPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 105 TPGh~-df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
=|||. .-..++...+..+|.+++|+|+.++.......+.... . +.|+++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-G-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-C-CCCEEEEEEchhcC
Confidence 37875 3566788899999999999999988776666554443 2 78999999999975
No 445
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.38 E-value=0.012 Score=66.16 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+|+++|-+|+||||++|+|....
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K 338 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK 338 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc
Confidence 6799999999999999999995543
No 446
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.37 E-value=0.1 Score=45.64 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=50.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEE
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLIN 101 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
+++.|..|+||||++..|...... .|. .+ +.. + .+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~---------------~v------~~~-----------------~-d~i 37 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK---------------RV------LLI-----------------D-DYV 37 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC---------------eE------EEE-----------------C-CEE
Confidence 678899999999999999654321 121 11 001 1 467
Q ss_pred EEeCCCCcccHHH-HHHHhhccCcEEEEecCCCcccccHHH
Q 003165 102 LIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTET 141 (843)
Q Consensus 102 liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~qt~~ 141 (843)
++|+||..+.... ....+..+|.++++++....-......
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~ 78 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARR 78 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHH
Confidence 8999997654432 256778899999999987654443333
No 447
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.33 E-value=0.036 Score=55.27 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=33.9
Q ss_pred CcEEEEecCCCcccccHHHHHHH--HHcCCCceEEEEECCccc
Q 003165 123 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~qt~~~l~~--~~~~~~p~ilviNKiD~~ 163 (843)
|.+++|+||.+........+.+. ....+.|.++++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999887777777766 334578999999999986
No 448
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.30 E-value=0.018 Score=58.23 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++++||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 444457888888999999999999998754443344422 24568999999999986
No 449
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.11 E-value=0.24 Score=56.06 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=84.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc---------------e---------EeecCcc-----------
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD---------------V---------RMTDTRA----------- 61 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~---------------~---------~~~d~~~----------- 61 (843)
.+...|+++|...+||||.++.+.. +.+..+. .|+ . +-.|-.+
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAq-ARIFPRG-SGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQ-ARIFPRG-SGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHH-hccCcCC-CcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 4678899999999999999998743 3322221 121 0 1111111
Q ss_pred -----cccccCeeEeeeeEEEEEeecccccccccCcCCCCceEEEEEeCCCCcc-------------cHHHHHHHhhccC
Q 003165 62 -----DEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVD-------------FSSEVTAALRITD 123 (843)
Q Consensus 62 -----~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------f~~e~~~~l~~~D 123 (843)
.....|.|++.-.+++.... .+-.+..++|.||... ...-.-..+..-+
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKG-------------PgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPN 450 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKG-------------PGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPN 450 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecC-------------CCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCC
Confidence 12234777777777776652 2235789999999642 2222334455667
Q ss_pred cEEEEecCCCcccccH----HHHHHHHHcCCCceEEEEECCccccccccCCHHHHHHHHHHHHH
Q 003165 124 GALVVVDCIEGVCVQT----ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVE 183 (843)
Q Consensus 124 ~ailVvda~~gv~~qt----~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~ 183 (843)
++||.| .+|-.... -.+..++.-.|...|+|++|+|+..-+ -++|+. +++|++
T Consensus 451 AIILCI--QDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn-lA~PdR----I~kIle 507 (980)
T KOG0447|consen 451 AIILCI--QDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN-VASPSR----IQQIIE 507 (980)
T ss_pred eEEEEe--ccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc-cCCHHH----HHHHHh
Confidence 777665 23322111 134456677888899999999986211 135544 555555
No 450
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.05 E-value=0.078 Score=56.76 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=40.6
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHH---HHHH-HcCCCceE-EEEECCcc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV---LRQA-LGERIRPV-LTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~---l~~~-~~~~~p~i-lviNKiD~ 162 (843)
.|.+.||||||..... .+..++..||.+|+++.+..---..+..+ ++.. ...+++.. +++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999865322 34456899999999998764211222222 2222 23345544 68999984
No 451
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=0.036 Score=60.32 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=68.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc---CCcccccCCceE---eecCccc-ccccCeeEeeeeEEEEEeecccc--cccc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDVR---MTDTRAD-EAERGITIKSTGISLYYEMTDDA--LKSY 89 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~g~~~---~~d~~~~-E~~rgiTi~~~~~~~~~~~~~~~--~~~~ 89 (843)
.--|-++|-.|+||||.+..|.++. |.-.-...+.+. ..|.... -.+-++.+..+ |...++. ...-
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs-----yte~dpv~ia~eg 175 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS-----YTEADPVKIASEG 175 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec-----ccccchHHHHHHH
Confidence 3356789999999999999997653 211111111111 1122211 11112322221 1110100 0011
Q ss_pred cCcCCCCceEEEEEeCCCCcc----cHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCcc
Q 003165 90 KGERNGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~ 162 (843)
....+..++.+.|+||.|... ...|+..... .-|-+|+|+||+-|- .-+-...+.+.-+- --++++|+|-
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEeccc
Confidence 112334578899999999543 3334433332 258999999998873 32222222222232 2368999995
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 253 h 253 (483)
T KOG0780|consen 253 H 253 (483)
T ss_pred C
Confidence 3
No 452
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.93 E-value=0.056 Score=58.00 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999764
No 453
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.90 E-value=0.021 Score=62.44 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=39.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|+|+|-+|+||||++++|......-....+ |+|.....+.+ +.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~p---------------GvT~smqeV~L-------------------dk 297 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVGNVP---------------GVTRSMQEVKL-------------------DK 297 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCCCCc---------------cchhhhhheec-------------------cC
Confidence 446999999999999999999775543222112 44554433332 56
Q ss_pred EEEEEeCCCC
Q 003165 99 LINLIDSPGH 108 (843)
Q Consensus 99 ~i~liDTPGh 108 (843)
.|-|+|+||.
T Consensus 298 ~i~llDsPgi 307 (435)
T KOG2484|consen 298 KIRLLDSPGI 307 (435)
T ss_pred CceeccCCce
Confidence 7899999994
No 454
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.89 E-value=0.032 Score=54.52 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred CcEEEEecCCCcccccHHHHH-HHHHcCCCceEEEEECCccc
Q 003165 123 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~qt~~~l-~~~~~~~~p~ilviNKiD~~ 163 (843)
|.+++|+|+.++.......+. ..+...++|+++++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999987766666555 45566789999999999975
No 455
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.89 E-value=0.12 Score=54.61 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=78.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCc----ccccCCceEeecCcccccccCeeEee------------eeEEEEEe
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII----AQEVAGDVRMTDTRADEAERGITIKS------------TGISLYYE 80 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i----~~~~~g~~~~~d~~~~E~~rgiTi~~------------~~~~~~~~ 80 (843)
.++.--.|-|--|+|||||++.++...+-- --...|. .. +.++-.+.+. +..-++-.
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGe-----s~--die~sl~~~~~gg~lyEewv~L~NGClCCt 127 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGE-----SS--DIEKSLAVSQEGGELYEEWVELRNGCLCCT 127 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhccc-----ch--hhhHHHHhccccchHHHHHHHhcCCeEEEE
Confidence 456667889999999999999997643210 0001221 11 1111111111 11111111
Q ss_pred ecccccccccCc--CCCCceEEEEEeCCCCcc-------cHH-HHHHHhhccCcEEEEecCCCccc--------ccHHHH
Q 003165 81 MTDDALKSYKGE--RNGNEYLINLIDSPGHVD-------FSS-EVTAALRITDGALVVVDCIEGVC--------VQTETV 142 (843)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~i~liDTPGh~d-------f~~-e~~~~l~~~D~ailVvda~~gv~--------~qt~~~ 142 (843)
..++.++.+..- .++ .....++.|-|..+ |.. +-...--..||+|-||||....- ..-.+.
T Consensus 128 Vk~~gvraie~lvqkkG-kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA 206 (391)
T KOG2743|consen 128 VKDNGVRAIENLVQKKG-KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEA 206 (391)
T ss_pred ecchHHHHHHHHHhcCC-CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHH
Confidence 122222222111 222 34556889999876 221 12222234699999999976311 111111
Q ss_pred HHHHHcCCCceEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003165 143 LRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMA 190 (843)
Q Consensus 143 l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (843)
.+|+. ..=.+++||.|+. . ++....+++.+..+|.+..
T Consensus 207 ~~QiA---~AD~II~NKtDli----~---~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 207 TRQIA---LADRIIMNKTDLV----S---EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred HHHHh---hhheeeecccccc----C---HHHHHHHHHHHHHhhhHHH
Confidence 12211 1124679999987 3 3455667777777776653
No 456
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.89 E-value=0.11 Score=53.67 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=37.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHH--hhccCcEEEEecCCCcccccHHHHHHHHHcC----CCceE-EEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGE----RIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~--l~~~D~ailVvda~~gv~~qt~~~l~~~~~~----~~p~i-lviNKiD~ 162 (843)
..|.+.||||||......- ... ++.||.+++|++...--......+++.+... +.+.. +++||+|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 4689999999986532111 112 3489999999987531111122333333322 33433 79999984
No 457
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.76 E-value=0.038 Score=59.62 Aligned_cols=135 Identities=21% Similarity=0.191 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc---CCcccccCCceEe---ecCcc-cccccCeeEeeeeEEEEEeecccccccc-
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDVRM---TDTRA-DEAERGITIKSTGISLYYEMTDDALKSY- 89 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~g~~~~---~d~~~-~E~~rgiTi~~~~~~~~~~~~~~~~~~~- 89 (843)
+...|.++|-.|+||||.+..|.+.. |.-.--.+|.+++ .+... .-.+-|+.+-. -.+. .++...-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~----~~~G-~DpAaVafD 212 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS----GKEG-ADPAAVAFD 212 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc----cCCC-CCcHHHHHH
Confidence 35667899999999999999996542 2111101221110 00000 01112333321 1111 11111100
Q ss_pred -cCcCCCCceEEEEEeCCCC----cccHHHHHHHhhcc---Cc-----EEEEecCCCcccccHHHHHHHHHcCC--CceE
Q 003165 90 -KGERNGNEYLINLIDSPGH----VDFSSEVTAALRIT---DG-----ALVVVDCIEGVCVQTETVLRQALGER--IRPV 154 (843)
Q Consensus 90 -~~~~~~~~~~i~liDTPGh----~df~~e~~~~l~~~---D~-----ailVvda~~gv~~qt~~~l~~~~~~~--~p~i 154 (843)
-.....+++.+.||||.|. .+...|...-.|++ +. .++|+||+-|-.. +.|+...+ +++-
T Consensus 213 Ai~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~ 287 (340)
T COG0552 213 AIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLD 287 (340)
T ss_pred HHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCc
Confidence 1112335788999999994 35777766665554 33 7788899887332 23333222 3433
Q ss_pred -EEEECCcc
Q 003165 155 -LTVNKMDR 162 (843)
Q Consensus 155 -lviNKiD~ 162 (843)
++++|+|-
T Consensus 288 GiIlTKlDg 296 (340)
T COG0552 288 GIILTKLDG 296 (340)
T ss_pred eEEEEeccc
Confidence 68999993
No 458
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=94.69 E-value=0.17 Score=45.00 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=49.9
Q ss_pred EEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEecc
Q 003165 378 LYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 457 (843)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl 457 (843)
++|.-...++..|. ++-+=|.+|+|+.||.+.. |..+ -||..|+-..| .++++|.||+.+-|.|+
T Consensus 3 g~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 3 GVVIESKLDKGRGP-VATVLVQNGTLKVGDVLVA-GTTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEE-cccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCC
Confidence 34444444566676 8899999999999999974 2121 36666665544 67999999999999998
Q ss_pred ccc
Q 003165 458 DQF 460 (843)
Q Consensus 458 ~~~ 460 (843)
++.
T Consensus 68 ~~~ 70 (95)
T cd03702 68 KGV 70 (95)
T ss_pred CCC
Confidence 864
No 459
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.66 E-value=0.072 Score=42.26 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=27.0
Q ss_pred HHHHHHhh-ccCcEEEEecCCC--cccccHH-HHHHHHH-cC-CCceEEEEECCc
Q 003165 113 SEVTAALR-ITDGALVVVDCIE--GVCVQTE-TVLRQAL-GE-RIRPVLTVNKMD 161 (843)
Q Consensus 113 ~e~~~~l~-~~D~ailVvda~~--gv~~qt~-~~l~~~~-~~-~~p~ilviNKiD 161 (843)
.+.+.|++ ..+++++++|.++ |.+.... .+++.+. .. +.|.++|+||+|
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 45667776 4577889999997 4433333 2333333 23 789999999998
No 460
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=0.08 Score=54.07 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=67.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|.++|+--+||||+.....++-. +.++-++.+ ...+|...- .+.-..+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMs------PneTlflES-----Tski~~d~i--------------------s~sfinf 77 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMS------PNETLFLES-----TSKITRDHI--------------------SNSFINF 77 (347)
T ss_pred eEEEEeecccCcchhhheeeeccC------CCceeEeec-----cCcccHhhh--------------------hhhhcce
Confidence 399999999999999876644321 222222211 111221110 0012356
Q ss_pred EEEeCCCCcccHHH---HHHHhhccCcEEEEecCCCccc-ccHHHHHHHHHcCCC----ceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSE---VTAALRITDGALVVVDCIEGVC-VQTETVLRQALGERI----RPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e---~~~~l~~~D~ailVvda~~gv~-~qt~~~l~~~~~~~~----p~ilviNKiD~~ 163 (843)
.+||-||..+|..- -+.-.+.+.+.|+||||.+... +-++.+.-.+...++ ..=++|-|.|-+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 78999999987643 3455678888999999987543 344444434443333 445799999954
No 461
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.24 E-value=0.7 Score=51.62 Aligned_cols=138 Identities=22% Similarity=0.247 Sum_probs=80.8
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCC--cccccCCceEeecCcccccccCeeEeee--------eEEEE
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI--IAQEVAGDVRMTDTRADEAERGITIKST--------GISLY 78 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~--i~~~~~g~~~~~d~~~~E~~rgiTi~~~--------~~~~~ 78 (843)
.+++......=-.|+|+|++-+||||++.++....-. |... ..+.|..|.+|+.- .|-||-+. .+.+.
T Consensus 7 ykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~-~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~ 84 (492)
T PF09547_consen 7 YKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDE-YERERARDELPQSG-AGKTIMTTEPKFIPNEAVEIT 84 (492)
T ss_pred HHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCH-HHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEE
Confidence 4455554444457999999999999999999765322 1110 00112334444322 13333221 11111
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCc-------------------------ccHHHHHHHhhcc--C----cEEE
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHV-------------------------DFSSEVTAALRIT--D----GALV 127 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~-------------------------df~~e~~~~l~~~--D----~ail 127 (843)
. .++-..++-+|||-|+. -|.....-+.+.. | |+|+
T Consensus 85 l-------------~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVV 151 (492)
T PF09547_consen 85 L-------------DDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVV 151 (492)
T ss_pred e-------------cCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEE
Confidence 1 13346789999999852 2665555555431 2 5666
Q ss_pred EecCCCcc------cccHHHHHHHHHcCCCceEEEEECCc
Q 003165 128 VVDCIEGV------CVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 128 Vvda~~gv------~~qt~~~l~~~~~~~~p~ilviNKiD 161 (843)
.-|++-+- ..-.+++...+...++|.++++|-.+
T Consensus 152 TTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~ 191 (492)
T PF09547_consen 152 TTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTK 191 (492)
T ss_pred ecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 66766432 23345666788889999999999887
No 462
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.23 E-value=0.16 Score=54.33 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.4
Q ss_pred CceEEEEEeCCCCcccHHH-HHHHhhccCcEEEEecCCC
Q 003165 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 133 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~ 133 (843)
..+.+.||||||+.....- ...++..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3688999999996522111 1123447999999998764
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.23 E-value=0.049 Score=44.24 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (843)
...|.|+.|+|||||++++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 464
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=94.18 E-value=0.11 Score=58.22 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=38.9
Q ss_pred cccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 109 ~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+|...+....+.+|++++|+|+.+-.......+.+.+ .+.|+++|+||+|+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 46777666666889999999999875544444444433 267899999999986
No 465
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.15 E-value=0.26 Score=53.46 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=39.0
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH---HHHHc-CCCceE-EEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---RQALG-ERIRPV-LTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l---~~~~~-~~~p~i-lviNKiD 161 (843)
+|.+.||||||.... ..+..++..||.+++++++..--......++ +.+.. .+++.. +++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 588999999996322 2344567889999999987542112222333 32221 233443 7889987
No 466
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.08 E-value=0.41 Score=51.49 Aligned_cols=37 Identities=14% Similarity=0.487 Sum_probs=29.3
Q ss_pred HHHHhhhccc--CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 7 EGLRRIMDFK--HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 7 ~~~~~~~~~~--~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|.+++..| .+++|+.|+|.+|.|||++++++....
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 3456666655 467899999999999999999996644
No 467
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.95 E-value=0.41 Score=46.41 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHhhccCcEEEEecCCCcccccH---HHHHHHHHcCCCceEEEEECCccc
Q 003165 113 SEVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 113 ~e~~~~l~~~D~ailVvda~~gv~~qt---~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
....+|+..|| +++||=.-.++-.+ ...++.+...+.|+|..+-+-++.
T Consensus 92 ~al~rA~~~aD--vIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 92 PALRRALEEAD--VIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred HHHHHHhhcCC--EEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 34556666677 45578554443333 355677778889988888776653
No 468
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=93.93 E-value=0.13 Score=52.52 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=49.5
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
+.+.+.|||||.... ..+....++.+|++|+|+++...-........+++...+.+++ +|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~-~~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGT-VTDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCccc-cchHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 357899999997322 2233345567999999999977656666777777777788866 699999965
No 469
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=93.81 E-value=0.0035 Score=61.20 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=78.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee--eEEEEEeecccccccccCcC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST--GISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~--~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+....+-|+|.-++|||+++.+.+..+-...-+ -||... .--+.|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yR------------------AtIgvdfalkVl~wd------------- 70 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYR------------------ATIGVDFALKVLQWD------------- 70 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHH------------------HHHhHHHHHHHhccC-------------
Confidence 3456678899999999999999887654221110 011110 1112343
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--------CCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--------RIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--------~~p~ilviNKiD~~ 163 (843)
+..-.+..|+|..|...|...+.-..+.+.++.+|+|.+......-..-|.+-... -+|+++..||+|..
T Consensus 71 d~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 71 DKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred hHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 11134678999999999998888889999999999999876555544455443322 23577899999986
No 470
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=93.67 E-value=0.29 Score=52.39 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=39.0
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH----cCCCceE-EEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~----~~~~p~i-lviNKiD~ 162 (843)
+.|.+.||||||...-. .+..++..||.+++++...---...+..+++.+. ..+++.. +++|+.|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 36899999999854211 1224688999999988654321122223332222 2345543 68899874
No 471
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=93.64 E-value=0.068 Score=55.16 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-+++++|-+.+|||||+..|......+. ++. +.|...-.....|+ +-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~va---sye-------------fttl~~vpG~~~y~----------------gaK 107 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVA---AYE-------------FTTLTTVPGVIRYK----------------GAK 107 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccc---ccc-------------ceeEEEecceEecc----------------ccc
Confidence 3789999999999999999933221111 111 11222222223343 778
Q ss_pred EEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHcC-----CCceEEEEECCccc
Q 003165 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE-----RIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~~-----~~p~ilviNKiD~~ 163 (843)
+.+.|.||..+ --.+++...|-|.++++|+|+...+. -+.+++ .+... +.|+=+..-|-|+-
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdkg 182 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDKG 182 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccccC
Confidence 99999999764 23467788899999999999987542 223332 22222 23666666677775
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.60 E-value=0.31 Score=48.44 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC-cccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.|.|+|.++|||||+.+.|....+. +.- ..+ ..-..+|-+..+.. ....++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~--iat---~~~~~~e~~~ri~~---------------------h~~~R~~~ 56 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLY--IAT---AQPFDDEMAARIAH---------------------HRQRRPAH 56 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEe--CcC---CCCChHHHHHHHHH---------------------HHhcCCCC
Confidence 5899999999999999999776431 100 010 00111121111110 01112445
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-----c---H-H----HHHHHHHcCCCceEEEEECCcccccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q---T-E----TVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-----q---t-~----~~l~~~~~~~~p~ilviNKiD~~~~~ 166 (843)
+..+.+|.+ ..+..... ...+-+++||+..+... + . + .+.+.+...+.+.|++-|=...-
T Consensus 57 w~t~E~~~~---l~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g--- 129 (170)
T PRK05800 57 WQTVEEPLD---LAELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG--- 129 (170)
T ss_pred CeEeccccc---HHHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc---
Confidence 667788764 22222221 12244788898765421 1 1 1 12233345566777887766654
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccC
Q 003165 167 LQVDGEEAYQTFSRVVENANVIMATYED 194 (843)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (843)
....+..-+.+++.+..+|+.+....+
T Consensus 130 -~vp~~~~~r~~~d~lG~lnq~la~~ad 156 (170)
T PRK05800 130 -IVPEYRLGRHFRDIAGRLNQQLAAAAD 156 (170)
T ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 333446677899999999988875433
No 473
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.41 E-value=0.15 Score=55.08 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCCcccHH-HHHHHhhccCcEEEEecCCC
Q 003165 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~ 133 (843)
+|.+.||||||..-... .+..++..||.+|+++.+..
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 68999999998532111 12235567999999998864
No 474
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=93.35 E-value=0.43 Score=49.40 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=40.8
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc---ccccHHHHHHHH---HcCCCceEEEEECCc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQA---LGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g---v~~qt~~~l~~~---~~~~~p~ilviNKiD 161 (843)
..+.+.||||+|-..-. +..++..+|.+|+=+-.+.- -..+|..+++.. ....+|.-++.|++.
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 35788999999965433 55677789987765443321 123344333332 345679999999997
No 475
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=93.30 E-value=0.57 Score=49.29 Aligned_cols=73 Identities=23% Similarity=0.229 Sum_probs=46.5
Q ss_pred ccCcCCCCceEEEEEeCCC-CcccHHHHHHHhhccCcEEEEecCCCccccc-HHHHHHHHHcCCCceEEEEECCcc
Q 003165 89 YKGERNGNEYLINLIDSPG-HVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPG-h~df~~e~~~~l~~~D~ailVvda~~gv~~q-t~~~l~~~~~~~~p~ilviNKiD~ 162 (843)
+-...+.....+.+||||- ..|-.-.+...++.+||||+|--..+ +.-+ .++-..++.+.++|++=+|-.|-.
T Consensus 148 flk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~-vAl~Dv~K~i~fc~K~~I~ilGvVENMs~ 222 (300)
T KOG3022|consen 148 FLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE-VALQDVRKEIDFCRKAGIPILGVVENMSG 222 (300)
T ss_pred HHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh-hhhHHHHhhhhhhhhcCCceEEEEecccc
Confidence 3445667777889999974 44444456667777799998864332 2221 234456778889998855544544
No 476
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.30 E-value=0.064 Score=54.74 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCccc------HHHHHHHhhccCcEE---EEecCCCcccccH-HHH----HHHHHcCCCceEEEEECCc
Q 003165 96 NEYLINLIDSPGHVDF------SSEVTAALRITDGAL---VVVDCIEGVCVQT-ETV----LRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df------~~e~~~~l~~~D~ai---lVvda~~gv~~qt-~~~----l~~~~~~~~p~ilviNKiD 161 (843)
...++.++||||++++ ...+.+.++..|.=+ =++|+.---.+.. ... +.-......|.|=++.|+|
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 3456789999997764 345666676666544 4445432111111 111 1222355678888999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 75
No 477
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.28 E-value=0.069 Score=60.49 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
+..+++|+|+|+.++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999998876554
No 478
>PRK08118 topology modulation protein; Reviewed
Probab=93.12 E-value=0.084 Score=52.34 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
++|.|+|++|+|||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965544
No 479
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.09 E-value=0.31 Score=52.36 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=36.5
Q ss_pred CceEEEEEeCCCCcccH-HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH---cCCCceE-EEEECCc
Q 003165 96 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~-~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~---~~~~p~i-lviNKiD 161 (843)
.++.+.||||||..-.. -....++..||.+++|+....--......+++.+. ..+.++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 35889999999864211 11122345889999999864311111122333332 3345554 7888764
No 480
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.05 E-value=0.098 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.|+|.|.+||||||++..|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 389999999999999999966544
No 481
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.87 Score=49.15 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 7 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 7 ~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.+.+++.+..+.-.|+++|..|+|||||+.-|-.
T Consensus 176 d~a~~ll~~~tdf~VIgvlG~QgsGKStllslLaa 210 (491)
T KOG4181|consen 176 DNARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLAA 210 (491)
T ss_pred hHHHHHhhcCCCeeEEEeecCCCccHHHHHHHHhc
Confidence 44667777777888899999999999999988843
No 482
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.01 E-value=0.27 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 483
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=93.00 E-value=0.49 Score=42.14 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=48.2
Q ss_pred EEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccc
Q 003165 379 YVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLD 458 (843)
Q Consensus 379 ~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~ 458 (843)
+|.-...+...|. ++-+=|++|+|+.||.+... ..+ -||..++ -..-..+.+|.+|+.+-+.|++
T Consensus 4 ~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~G-~~~----------GkVr~~~---d~~g~~v~~a~Ps~~v~i~g~~ 68 (95)
T cd03701 4 TVIESKLDKGRGP-VATVIVQNGTLKKGDVIVAG-GTY----------GKIRTMV---DENGKALLEAGPSTPVEILGLK 68 (95)
T ss_pred EEEEEEecCCCCe-eEEEEEEcCeEecCCEEEEC-Ccc----------ceEEEEE---CCCCCCccccCCCCCEEEeeec
Confidence 4444444666676 88899999999999999752 111 2555554 4445568999999999999988
Q ss_pred cc
Q 003165 459 QF 460 (843)
Q Consensus 459 ~~ 460 (843)
+.
T Consensus 69 ~~ 70 (95)
T cd03701 69 DV 70 (95)
T ss_pred CC
Confidence 75
No 484
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.13 Score=53.49 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
-|+|+||+|+|||||++.+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 485
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.92 E-value=0.096 Score=54.14 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
-|+|+|++|||||||++.+
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 486
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=0.23 Score=62.60 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=40.6
Q ss_pred eEEEEEeCCCC------cccHHH-----------HHHHhhccCcEEEEecCCCccc--ccHH-HHH----------HHHH
Q 003165 98 YLINLIDSPGH------VDFSSE-----------VTAALRITDGALVVVDCIEGVC--VQTE-TVL----------RQAL 147 (843)
Q Consensus 98 ~~i~liDTPGh------~df~~e-----------~~~~l~~~D~ailVvda~~gv~--~qt~-~~l----------~~~~ 147 (843)
..-.+|||.|- .++... -.+..+-.||+|+-+|+.+=.+ ++.+ .+. +...
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568999993 222222 1233456799999999987322 2222 111 2223
Q ss_pred cCCCceEEEEECCccc
Q 003165 148 GERIRPVLTVNKMDRC 163 (843)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (843)
....|+.+++||+|+.
T Consensus 254 ~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 254 HARLPVYLVLTKADLL 269 (1188)
T ss_pred ccCCceEEEEeccccc
Confidence 5567999999999986
No 487
>PRK12289 GTPase RsgA; Reviewed
Probab=92.65 E-value=0.16 Score=56.54 Aligned_cols=47 Identities=26% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHhhccCcEEEEecCCCcc-cc-cHHHHHHHHHcCCCceEEEEECCccc
Q 003165 117 AALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 117 ~~l~~~D~ailVvda~~gv-~~-qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+++.+|.+++|+|+.+.. .. +....+..+...++|+++|+||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3578999999999998642 33 22445556667899999999999986
No 488
>KOG2484 consensus GTPase [General function prediction only]
Probab=92.60 E-value=0.33 Score=53.45 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=47.5
Q ss_pred EEEEeCCCCc-ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH-cCC-CceEEEEECCccc
Q 003165 100 INLIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-GER-IRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~-df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~-~~~-~p~ilviNKiD~~ 163 (843)
.+-.|-+++. -|..+...-+..+|.+|-|+||.+........+-++.. ..+ .++|+|+||+|+.
T Consensus 124 ~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLV 190 (435)
T KOG2484|consen 124 ENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLV 190 (435)
T ss_pred hhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccC
Confidence 3445666654 47888899999999999999999976555544444443 334 7889999999987
No 489
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.55 E-value=0.11 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
+|.|+|++||||||++..|....+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 78999999999999999997775543
No 490
>PHA00729 NTP-binding motif containing protein
Probab=92.55 E-value=0.14 Score=52.88 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=30.4
Q ss_pred CcccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
|.|+....+.++.. ....||+|.|.+|+|||||+.+|....+
T Consensus 1 ~~~~~k~~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 1 MLWLAKKIVSAYNN--NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CchHHHHHHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45554545555533 2446999999999999999999977543
No 491
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.55 E-value=1.1 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+..|++++|++|+|||||++.|..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhC
Confidence 3468999999999999999999954
No 492
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.51 E-value=0.69 Score=49.35 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=35.5
Q ss_pred ceEEEEEeCCCCcccHHHH-HHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~-~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD 161 (843)
.|.+.||||||+....... ..++..+|.+|+++.+..--......+++.+...+.+.. ++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 5789999999865321110 111268999999987754211222333344444444433 4555544
No 493
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.42 E-value=0.093 Score=53.28 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
-.|+|+|++|||||||+.+|
T Consensus 29 evv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 494
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.32 E-value=0.13 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.|+|+|+.|+|||||++.|+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997653
No 495
>PRK01889 GTPase RsgA; Reviewed
Probab=92.29 E-value=0.27 Score=54.97 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=38.0
Q ss_pred hhccCcEEEEecCCCcccc-cHHHHHHHHHcCCCceEEEEECCccc
Q 003165 119 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 119 l~~~D~ailVvda~~gv~~-qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+|.+++|+++..++.. .....+..+...+++++|++||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4678999999999877766 44577778889999999999999986
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.15 E-value=0.13 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
-..++|+|+.|+|||||++.++.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35689999999999999998864
No 497
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.14 E-value=0.13 Score=42.89 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 003165 22 MSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~ 42 (843)
|++.|.+|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999543
No 498
>PRK07261 topology modulation protein; Provisional
Probab=92.10 E-value=0.14 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+|+|+|.+|+|||||...|....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999995443
No 499
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.01 E-value=0.16 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-.+++|+|+.|+|||||+++|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999653
No 500
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.97 E-value=0.15 Score=48.60 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Q 003165 22 MSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 22 i~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
|.++|++|+||||++..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999976554
Done!