Query 003165
Match_columns 843
No_of_seqs 320 out of 2697
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:38:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 6E-156 2E-160 1421.2 83.1 840 1-843 1-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 8E-123 3E-127 1115.0 52.6 671 17-809 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 3E-114 1E-118 1035.3 67.0 671 15-822 6-701 (704)
4 2xex_A Elongation factor G; GT 100.0 2E-112 8E-117 1018.6 60.1 663 16-823 7-690 (693)
5 1dar_A EF-G, elongation factor 100.0 2E-112 5E-117 1019.8 51.8 660 15-821 8-689 (691)
6 3j25_A Tetracycline resistance 100.0 5E-115 2E-119 1033.5 14.9 602 18-813 1-620 (638)
7 2dy1_A Elongation factor G; tr 100.0 8E-105 3E-109 950.4 53.6 634 16-824 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 1.2E-78 4.2E-83 707.2 31.3 449 14-572 26-501 (548)
9 2ywe_A GTP-binding protein LEP 100.0 3.4E-74 1.2E-78 670.8 46.5 488 16-825 3-522 (600)
10 3cb4_D GTP-binding protein LEP 100.0 2.5E-72 8.6E-77 656.7 45.2 486 17-825 2-517 (599)
11 2h5e_A Peptide chain release f 100.0 5.6E-63 1.9E-67 573.2 32.0 442 16-571 10-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 1.7E-61 5.8E-66 560.1 29.1 440 16-571 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1.9E-38 6.4E-43 338.0 20.2 195 453-810 2-208 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 8.7E-29 3E-33 281.7 29.2 286 16-471 14-327 (439)
15 1d2e_A Elongation factor TU (E 100.0 1.7E-29 5.9E-34 284.3 20.8 283 19-471 3-290 (397)
16 2c78_A Elongation factor TU-A; 100.0 6.6E-29 2.3E-33 280.5 23.9 295 15-471 7-308 (405)
17 1g7s_A Translation initiation 100.0 9.3E-30 3.2E-34 297.9 16.1 335 18-511 4-373 (594)
18 1jny_A EF-1-alpha, elongation 100.0 1.6E-28 5.5E-33 279.6 21.5 131 17-163 4-157 (435)
19 3mca_A HBS1, elongation factor 100.0 5.8E-29 2E-33 292.3 14.3 288 16-471 174-489 (592)
20 3p26_A Elongation factor 1 alp 99.9 7.8E-27 2.7E-31 269.2 25.8 301 11-471 25-362 (483)
21 1r5b_A Eukaryotic peptide chai 99.9 4.2E-27 1.4E-31 269.9 21.8 131 17-163 41-194 (467)
22 3avx_A Elongation factor TS, e 99.9 2.4E-27 8.4E-32 286.8 20.5 284 17-471 294-581 (1289)
23 1zun_B Sulfate adenylate trans 99.9 3.3E-26 1.1E-30 260.6 24.5 144 8-171 11-174 (434)
24 1f60_A Elongation factor EEF1A 99.9 7.8E-27 2.7E-31 267.0 19.4 299 14-471 2-328 (458)
25 2elf_A Protein translation elo 99.9 2.3E-26 7.9E-31 255.4 22.2 104 18-162 20-125 (370)
26 1kk1_A EIF2gamma; initiation o 99.9 5.6E-26 1.9E-30 256.9 24.9 134 16-163 7-150 (410)
27 3izq_1 HBS1P, elongation facto 99.9 2E-26 6.7E-31 271.5 19.7 294 16-471 164-496 (611)
28 1s0u_A EIF-2-gamma, translatio 99.9 1.1E-24 3.8E-29 246.0 23.7 133 17-163 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 8.1E-27 2.8E-31 266.5 3.5 114 18-163 3-116 (501)
30 1wb1_A Translation elongation 99.9 2.9E-25 1E-29 255.2 11.7 123 16-163 16-138 (482)
31 3sjy_A Translation initiation 99.9 1.5E-23 5.2E-28 236.4 22.2 133 17-163 6-142 (403)
32 3izy_P Translation initiation 99.9 2.2E-25 7.6E-30 256.7 3.8 115 18-163 3-117 (537)
33 1wf3_A GTP-binding protein; GT 99.6 3E-15 1E-19 161.6 13.6 116 17-163 5-130 (301)
34 2hjg_A GTP-binding protein ENG 99.6 8.1E-15 2.8E-19 166.7 12.1 115 18-163 174-299 (436)
35 2lkc_A Translation initiation 99.5 5.2E-15 1.8E-19 146.0 8.1 115 17-163 6-120 (178)
36 2xtp_A GTPase IMAP family memb 99.5 3.7E-14 1.3E-18 149.7 15.0 116 17-163 20-152 (260)
37 3iev_A GTP-binding protein ERA 99.5 3.6E-14 1.2E-18 153.8 14.8 118 16-163 7-135 (308)
38 1ega_A Protein (GTP-binding pr 99.5 9.3E-15 3.2E-19 157.9 8.6 114 18-163 7-129 (301)
39 3lxw_A GTPase IMAP family memb 99.5 1.1E-13 3.8E-18 145.1 13.8 123 18-175 20-160 (247)
40 2dyk_A GTP-binding protein; GT 99.5 1E-13 3.5E-18 134.1 12.4 114 19-163 1-121 (161)
41 4dcu_A GTP-binding protein ENG 99.5 8.7E-14 3E-18 159.2 12.1 115 18-163 194-319 (456)
42 3qq5_A Small GTP-binding prote 99.5 3E-14 1E-18 160.1 7.0 115 17-163 32-153 (423)
43 4dhe_A Probable GTP-binding pr 99.5 1.3E-13 4.4E-18 141.6 10.5 117 17-163 27-157 (223)
44 3iby_A Ferrous iron transport 99.4 2.6E-13 8.9E-18 143.0 10.6 111 19-163 1-123 (256)
45 2fh5_B SR-beta, signal recogni 99.4 1.1E-12 3.9E-17 133.7 14.8 133 15-184 3-146 (214)
46 1mky_A Probable GTP-binding pr 99.4 3.8E-13 1.3E-17 153.1 12.3 113 20-163 2-123 (439)
47 1wms_A RAB-9, RAB9, RAS-relate 99.4 9.4E-13 3.2E-17 129.5 13.5 119 15-163 3-129 (177)
48 3t1o_A Gliding protein MGLA; G 99.4 4.7E-13 1.6E-17 134.0 11.4 128 17-163 12-148 (198)
49 4bas_A ADP-ribosylation factor 99.4 4.3E-13 1.5E-17 134.8 11.0 115 16-163 14-140 (199)
50 3tw8_B RAS-related protein RAB 99.4 1.9E-13 6.6E-18 134.8 8.3 120 14-163 4-126 (181)
51 3k53_A Ferrous iron transport 99.4 3.6E-13 1.2E-17 143.2 10.8 112 18-163 2-122 (271)
52 2bme_A RAB4A, RAS-related prot 99.4 5.4E-13 1.9E-17 132.5 11.4 118 16-163 7-128 (186)
53 3def_A T7I23.11 protein; chlor 99.4 7.4E-13 2.5E-17 140.1 12.6 116 17-163 34-164 (262)
54 3tkl_A RAS-related protein RAB 99.4 4.9E-13 1.7E-17 134.0 10.3 122 12-163 9-134 (196)
55 1z0f_A RAB14, member RAS oncog 99.4 1.9E-12 6.6E-17 127.3 14.4 118 16-163 12-133 (179)
56 1ky3_A GTP-binding protein YPT 99.4 7.7E-13 2.6E-17 130.5 11.4 119 16-163 5-131 (182)
57 2fn4_A P23, RAS-related protei 99.4 6.8E-13 2.3E-17 130.8 10.4 118 15-163 5-127 (181)
58 1vg8_A RAS-related protein RAB 99.4 8E-13 2.7E-17 133.8 11.2 119 15-163 4-130 (207)
59 1fzq_A ADP-ribosylation factor 99.4 2.2E-12 7.6E-17 128.2 14.2 120 9-163 6-130 (181)
60 2il1_A RAB12; G-protein, GDP, 99.4 1E-12 3.5E-17 131.9 11.7 117 17-163 24-144 (192)
61 1r8s_A ADP-ribosylation factor 99.4 1.9E-12 6.4E-17 125.6 13.1 108 21-163 2-114 (164)
62 3kkq_A RAS-related protein M-R 99.4 1.6E-12 5.6E-17 128.8 12.8 115 17-163 16-136 (183)
63 1zd9_A ADP-ribosylation factor 99.4 1.2E-12 4E-17 130.9 11.8 112 18-163 21-137 (188)
64 1upt_A ARL1, ADP-ribosylation 99.4 7.7E-13 2.6E-17 129.3 10.2 111 18-163 6-121 (171)
65 1u8z_A RAS-related protein RAL 99.4 3.8E-12 1.3E-16 123.5 14.9 115 18-163 3-122 (168)
66 2hjg_A GTP-binding protein ENG 99.4 2.8E-13 9.4E-18 154.1 7.4 113 20-163 4-124 (436)
67 2a9k_A RAS-related protein RAL 99.4 3E-12 1E-16 126.9 13.8 118 15-163 14-136 (187)
68 2y8e_A RAB-protein 6, GH09086P 99.4 1.1E-12 3.7E-17 129.1 10.3 120 14-163 9-132 (179)
69 2p5s_A RAS and EF-hand domain 99.4 1E-12 3.4E-17 132.6 10.3 117 17-163 26-146 (199)
70 1ksh_A ARF-like protein 2; sma 99.4 9E-13 3.1E-17 131.1 9.8 112 17-163 16-132 (186)
71 3pqc_A Probable GTP-binding pr 99.4 2.2E-12 7.4E-17 128.9 12.4 113 17-163 21-146 (195)
72 1r2q_A RAS-related protein RAB 99.4 1.3E-12 4.3E-17 127.3 10.4 116 18-163 5-124 (170)
73 3bc1_A RAS-related protein RAB 99.4 2E-12 6.7E-17 129.0 12.0 127 17-163 9-140 (195)
74 2efe_B Small GTP-binding prote 99.4 1.1E-12 3.9E-17 129.4 10.1 117 17-163 10-130 (181)
75 3i8s_A Ferrous iron transport 99.4 1E-12 3.6E-17 139.8 10.5 110 20-163 4-125 (274)
76 2hxs_A RAB-26, RAS-related pro 99.4 1.9E-12 6.6E-17 127.4 11.7 118 17-163 4-128 (178)
77 2g6b_A RAS-related protein RAB 99.4 1.7E-12 5.9E-17 128.0 11.3 118 17-163 8-129 (180)
78 2hup_A RAS-related protein RAB 99.4 3.4E-12 1.1E-16 129.2 13.7 115 17-163 27-147 (201)
79 1ek0_A Protein (GTP-binding pr 99.4 1.9E-12 6.3E-17 126.1 11.4 115 19-163 3-121 (170)
80 1zj6_A ADP-ribosylation factor 99.4 1.8E-12 6E-17 129.3 11.5 112 17-163 14-130 (187)
81 1zbd_A Rabphilin-3A; G protein 99.4 1.3E-12 4.5E-17 131.9 10.5 116 18-163 7-126 (203)
82 3clv_A RAB5 protein, putative; 99.4 3.1E-12 1.1E-16 128.5 13.2 66 97-162 92-159 (208)
83 1kao_A RAP2A; GTP-binding prot 99.4 3E-12 1E-16 124.1 12.6 114 19-163 3-121 (167)
84 2ew1_A RAS-related protein RAB 99.4 1.4E-12 4.9E-17 132.1 10.5 122 12-163 19-144 (201)
85 1m2o_B GTP-binding protein SAR 99.4 1.2E-12 4.1E-17 131.2 9.8 111 18-163 22-137 (190)
86 4dcu_A GTP-binding protein ENG 99.4 3.4E-13 1.1E-17 154.3 6.5 115 18-163 22-144 (456)
87 2gj8_A MNME, tRNA modification 99.4 2.3E-12 7.9E-17 127.0 11.7 113 20-163 5-128 (172)
88 2h57_A ADP-ribosylation factor 99.4 1.9E-12 6.5E-17 129.4 11.3 113 18-163 20-139 (190)
89 1jwy_B Dynamin A GTPase domain 99.4 2.3E-12 7.9E-17 139.8 12.6 67 97-163 130-211 (315)
90 1c1y_A RAS-related protein RAP 99.4 2.5E-12 8.6E-17 124.9 11.5 114 19-163 3-121 (167)
91 1svi_A GTP-binding protein YSX 99.4 2.7E-12 9.4E-17 128.5 12.0 114 17-163 21-147 (195)
92 3a1s_A Iron(II) transport prot 99.4 2E-12 6.9E-17 136.3 11.5 112 18-163 4-123 (258)
93 2fu5_C RAS-related protein RAB 99.4 1.1E-12 3.9E-17 129.9 9.0 117 17-163 6-126 (183)
94 2oil_A CATX-8, RAS-related pro 99.4 2E-12 6.9E-17 129.5 11.0 118 16-163 22-143 (193)
95 1g16_A RAS-related protein SEC 99.4 2E-12 6.8E-17 126.0 10.6 116 18-163 2-121 (170)
96 1z2a_A RAS-related protein RAB 99.4 9.2E-13 3.2E-17 128.2 8.1 117 17-163 3-122 (168)
97 2erx_A GTP-binding protein DI- 99.4 2.7E-12 9.4E-17 125.2 11.5 114 19-163 3-122 (172)
98 1x3s_A RAS-related protein RAB 99.4 3.3E-12 1.1E-16 127.7 12.3 117 17-163 13-134 (195)
99 2fg5_A RAB-22B, RAS-related pr 99.4 1.9E-12 6.6E-17 129.7 10.5 117 17-163 21-141 (192)
100 1z06_A RAS-related protein RAB 99.3 1.8E-12 6E-17 129.5 10.2 117 17-163 18-140 (189)
101 1f6b_A SAR1; gtpases, N-termin 99.3 2.8E-12 9.6E-17 129.4 11.7 112 17-163 23-139 (198)
102 2gf9_A RAS-related protein RAB 99.3 1.3E-12 4.6E-17 130.4 9.2 117 17-163 20-140 (189)
103 1z0j_A RAB-22, RAS-related pro 99.3 2.9E-12 9.9E-17 124.9 11.2 116 18-163 5-124 (170)
104 1mky_A Probable GTP-binding pr 99.3 3.6E-12 1.2E-16 145.0 13.6 115 18-163 179-305 (439)
105 2b6h_A ADP-ribosylation factor 99.3 3.2E-12 1.1E-16 128.3 11.6 112 17-163 27-143 (192)
106 1h65_A Chloroplast outer envel 99.3 7.7E-12 2.6E-16 132.8 14.9 130 17-178 37-181 (270)
107 1z08_A RAS-related protein RAB 99.3 3E-12 1E-16 124.9 10.8 117 17-163 4-124 (170)
108 2gf0_A GTP-binding protein DI- 99.3 2.7E-12 9.1E-17 128.9 10.6 117 16-163 5-127 (199)
109 3llu_A RAS-related GTP-binding 99.3 2.4E-12 8.3E-17 129.5 10.3 118 16-163 17-142 (196)
110 2bcg_Y Protein YP2, GTP-bindin 99.3 1.6E-12 5.6E-17 131.6 8.9 117 17-163 6-126 (206)
111 3cph_A RAS-related protein SEC 99.3 3E-12 1E-16 130.1 10.9 117 17-163 18-138 (213)
112 2bov_A RAla, RAS-related prote 99.3 1.3E-11 4.5E-16 124.5 15.6 116 17-163 12-132 (206)
113 1moz_A ARL1, ADP-ribosylation 99.3 1.3E-12 4.5E-17 129.3 7.9 112 17-163 16-132 (183)
114 2f7s_A C25KG, RAS-related prot 99.3 2.8E-12 9.6E-17 131.0 10.6 127 17-163 23-154 (217)
115 3t5g_A GTP-binding protein RHE 99.3 3.3E-12 1.1E-16 126.3 10.7 115 18-163 5-124 (181)
116 2wji_A Ferrous iron transport 99.3 5.4E-12 1.9E-16 123.2 11.6 111 19-163 3-121 (165)
117 2ce2_X GTPase HRAS; signaling 99.3 7.3E-12 2.5E-16 121.0 12.4 113 20-163 4-121 (166)
118 2wjg_A FEOB, ferrous iron tran 99.3 6.3E-12 2.1E-16 125.1 12.1 112 18-163 6-125 (188)
119 4dsu_A GTPase KRAS, isoform 2B 99.3 5.1E-12 1.7E-16 125.5 11.2 114 19-163 4-122 (189)
120 2a5j_A RAS-related protein RAB 99.3 2.6E-12 8.8E-17 128.6 9.0 117 17-163 19-139 (191)
121 3reg_A RHO-like small GTPase; 99.3 3.5E-12 1.2E-16 127.9 9.8 116 17-163 21-140 (194)
122 3dz8_A RAS-related protein RAB 99.3 2.9E-12 9.8E-17 128.3 9.0 117 17-163 21-141 (191)
123 2nzj_A GTP-binding protein REM 99.3 4.4E-12 1.5E-16 124.3 10.1 115 18-163 3-124 (175)
124 2h17_A ADP-ribosylation factor 99.3 2.4E-12 8.3E-17 127.6 8.2 111 18-163 20-135 (181)
125 4djt_A GTP-binding nuclear pro 99.3 2.1E-12 7.2E-17 132.0 7.8 121 14-163 6-130 (218)
126 2yc2_C IFT27, small RAB-relate 99.3 2.7E-12 9.4E-17 129.7 8.5 116 18-163 19-145 (208)
127 3r7w_A Gtpase1, GTP-binding pr 99.3 4.2E-12 1.4E-16 137.4 10.5 115 19-163 3-128 (307)
128 1nrj_B SR-beta, signal recogni 99.3 1.3E-11 4.5E-16 126.1 13.6 111 17-163 10-133 (218)
129 3gj0_A GTP-binding nuclear pro 99.3 3E-12 1E-16 131.4 8.6 117 16-163 12-132 (221)
130 3gee_A MNME, tRNA modification 99.3 3.4E-12 1.2E-16 145.8 9.7 111 20-163 234-356 (476)
131 2x77_A ADP-ribosylation factor 99.3 1.5E-12 5.1E-17 129.9 5.8 112 17-163 20-136 (189)
132 2o52_A RAS-related protein RAB 99.3 2.4E-12 8.1E-17 130.1 7.3 117 17-163 23-143 (200)
133 3lxx_A GTPase IMAP family memb 99.3 8.2E-12 2.8E-16 130.0 11.4 117 16-163 26-158 (239)
134 3q72_A GTP-binding protein RAD 99.3 2.4E-12 8.1E-17 125.2 6.9 113 19-163 2-119 (166)
135 3con_A GTPase NRAS; structural 99.3 1.7E-11 5.8E-16 122.3 13.3 114 19-163 21-139 (190)
136 3q85_A GTP-binding protein REM 99.3 6.9E-12 2.4E-16 122.3 9.9 115 19-163 2-122 (169)
137 1m7b_A RND3/RHOE small GTP-bin 99.3 8.2E-12 2.8E-16 124.1 10.5 115 17-163 5-124 (184)
138 3oes_A GTPase rhebl1; small GT 99.3 2.4E-12 8.3E-17 130.0 6.6 116 17-163 22-142 (201)
139 4gzl_A RAS-related C3 botulinu 99.3 5.6E-12 1.9E-16 127.8 9.3 116 17-163 28-147 (204)
140 1mh1_A RAC1; GTP-binding, GTPa 99.3 2.6E-12 9E-17 127.2 6.7 114 19-163 5-122 (186)
141 2p67_A LAO/AO transport system 99.3 1.4E-11 4.7E-16 135.4 12.7 61 96-163 147-207 (341)
142 3t5d_A Septin-7; GTP-binding p 99.3 3.1E-11 1.1E-15 128.4 15.0 122 19-163 8-157 (274)
143 3l0i_B RAS-related protein RAB 99.3 5.2E-13 1.8E-17 134.7 1.1 117 17-163 31-151 (199)
144 3geh_A MNME, tRNA modification 99.3 3.3E-12 1.1E-16 145.3 7.8 111 20-163 225-343 (462)
145 2atx_A Small GTP binding prote 99.3 8.8E-12 3E-16 124.9 10.0 115 18-163 17-135 (194)
146 3cpj_B GTP-binding protein YPT 99.3 3.1E-12 1.1E-16 131.5 6.7 117 17-163 11-131 (223)
147 2ged_A SR-beta, signal recogni 99.3 8.6E-12 2.9E-16 124.7 9.5 128 17-184 46-187 (193)
148 2qu8_A Putative nucleolar GTP- 99.3 2.9E-11 9.9E-16 124.8 13.7 115 17-163 27-155 (228)
149 2j0v_A RAC-like GTP-binding pr 99.3 9.6E-12 3.3E-16 126.5 9.6 114 18-163 8-126 (212)
150 1gwn_A RHO-related GTP-binding 99.3 1.5E-11 5E-16 125.0 10.5 117 16-163 25-145 (205)
151 2j1l_A RHO-related GTP-binding 99.2 1.1E-11 3.7E-16 126.7 9.5 114 18-163 33-151 (214)
152 2atv_A RERG, RAS-like estrogen 99.2 6.4E-11 2.2E-15 118.9 14.9 114 18-163 27-145 (196)
153 2fv8_A H6, RHO-related GTP-bin 99.2 7.6E-12 2.6E-16 127.0 8.1 115 18-163 24-142 (207)
154 3o47_A ADP-ribosylation factor 99.2 1.4E-11 4.8E-16 134.6 10.7 109 20-163 166-279 (329)
155 1xzp_A Probable tRNA modificat 99.2 7.9E-12 2.7E-16 142.8 9.1 111 20-163 244-363 (482)
156 2gco_A H9, RHO-related GTP-bin 99.2 7.1E-12 2.4E-16 126.6 7.5 115 18-163 24-142 (201)
157 2q3h_A RAS homolog gene family 99.2 8.6E-12 2.9E-16 125.7 8.0 115 17-163 18-137 (201)
158 3c5c_A RAS-like protein 12; GD 99.2 3.5E-11 1.2E-15 120.1 12.1 115 17-163 19-140 (187)
159 2qpt_A EH domain-containing pr 99.2 2.5E-11 8.5E-16 141.3 12.6 66 98-163 154-231 (550)
160 3bwd_D RAC-like GTP-binding pr 99.2 2.3E-12 7.9E-17 127.3 3.0 115 18-163 7-125 (182)
161 3q3j_B RHO-related GTP-binding 99.2 2E-11 7E-16 124.7 10.0 114 18-163 26-144 (214)
162 3b1v_A Ferrous iron uptake tra 99.2 1E-11 3.5E-16 131.8 8.0 110 19-163 3-120 (272)
163 2aka_B Dynamin-1; fusion prote 99.2 4.7E-11 1.6E-15 128.4 12.6 67 97-163 124-205 (299)
164 4dkx_A RAS-related protein RAB 99.2 7.4E-11 2.5E-15 120.9 13.3 119 15-163 9-131 (216)
165 3ihw_A Centg3; RAS, centaurin, 99.2 8.7E-11 3E-15 117.0 13.2 110 17-163 18-132 (184)
166 2iwr_A Centaurin gamma 1; ANK 99.2 1.8E-10 6.3E-15 113.3 13.9 109 18-163 6-121 (178)
167 3th5_A RAS-related C3 botulinu 98.8 3E-12 1E-16 129.5 0.0 116 17-163 28-147 (204)
168 3cbq_A GTP-binding protein REM 99.2 1.3E-10 4.4E-15 116.9 11.6 117 17-163 21-143 (195)
169 2cxx_A Probable GTP-binding pr 99.1 7.5E-11 2.6E-15 117.2 9.6 108 20-163 2-135 (190)
170 3lvq_E ARF-GAP with SH3 domain 99.1 9.4E-11 3.2E-15 135.6 10.5 111 18-163 321-436 (497)
171 2j69_A Bacterial dynamin-like 99.1 3.3E-10 1.1E-14 135.5 11.6 66 98-163 174-243 (695)
172 2qtf_A Protein HFLX, GTP-bindi 99.0 1.3E-09 4.3E-14 120.5 14.6 114 18-163 178-305 (364)
173 2wkq_A NPH1-1, RAS-related C3 99.0 2.7E-10 9.1E-15 124.1 9.0 116 17-163 153-272 (332)
174 3dpu_A RAB family protein; roc 99.0 6.2E-10 2.1E-14 129.8 11.5 124 16-163 38-163 (535)
175 3t34_A Dynamin-related protein 99.0 9.7E-10 3.3E-14 121.6 11.9 67 97-163 135-216 (360)
176 2zej_A Dardarin, leucine-rich 99.0 2.8E-10 9.4E-15 113.1 6.2 119 20-163 3-125 (184)
177 2f9l_A RAB11B, member RAS onco 99.0 8.6E-10 2.9E-14 111.0 9.8 116 18-163 4-123 (199)
178 2x2e_A Dynamin-1; nitration, h 99.0 9.9E-10 3.4E-14 121.2 10.9 67 97-163 129-210 (353)
179 1lnz_A SPO0B-associated GTP-bi 99.0 3.3E-10 1.1E-14 123.9 6.7 114 19-163 158-287 (342)
180 2e87_A Hypothetical protein PH 99.0 1.6E-09 5.4E-14 119.8 12.2 115 17-163 165-293 (357)
181 2g3y_A GTP-binding protein GEM 99.0 1.6E-09 5.4E-14 110.5 10.0 118 17-163 35-158 (211)
182 3r7w_B Gtpase2, GTP-binding pr 98.9 1.1E-09 3.7E-14 118.0 8.5 110 21-163 1-119 (331)
183 2qag_A Septin-2, protein NEDD5 98.9 3.6E-09 1.2E-13 116.9 11.7 124 18-163 36-187 (361)
184 1wxq_A GTP-binding protein; st 98.9 1.3E-09 4.6E-14 121.6 8.1 98 21-134 2-114 (397)
185 1pui_A ENGB, probable GTP-bind 98.9 6.6E-09 2.3E-13 105.1 12.3 113 18-163 25-150 (210)
186 2cjw_A GTP-binding protein GEM 98.9 3.1E-09 1E-13 106.5 9.3 117 18-163 5-127 (192)
187 1oix_A RAS-related protein RAB 98.9 3.2E-09 1.1E-13 106.2 8.8 117 17-163 27-147 (191)
188 4a9a_A Ribosome-interacting GT 98.9 4.4E-09 1.5E-13 115.8 9.6 112 19-163 72-195 (376)
189 3p32_A Probable GTPase RV1496/ 98.8 2.6E-09 8.9E-14 117.9 7.5 61 96-163 170-230 (355)
190 3zvr_A Dynamin-1; hydrolase, D 98.8 1.2E-08 4E-13 121.4 12.8 67 97-163 149-230 (772)
191 2wsm_A Hydrogenase expression/ 98.7 4.9E-09 1.7E-13 107.2 4.3 135 17-163 28-167 (221)
192 2j37_W Signal recognition part 98.7 1.2E-08 4E-13 116.8 7.4 133 18-163 100-253 (504)
193 3c5h_A Glucocorticoid receptor 98.6 2E-08 6.9E-13 105.4 5.5 43 121-163 162-211 (255)
194 1udx_A The GTP-binding protein 98.6 1.9E-07 6.6E-12 104.4 11.3 114 19-163 157-282 (416)
195 2www_A Methylmalonic aciduria 98.6 1.2E-07 4E-12 104.3 9.3 61 96-163 165-225 (349)
196 1jal_A YCHF protein; nucleotid 98.5 8.1E-08 2.8E-12 105.2 7.7 98 20-133 3-108 (363)
197 1yrb_A ATP(GTP)binding protein 98.5 1.6E-07 5.6E-12 98.5 7.7 66 97-163 108-184 (262)
198 2dby_A GTP-binding protein; GD 98.5 6.9E-07 2.4E-11 98.4 12.7 98 20-133 2-111 (368)
199 2qag_C Septin-7; cell cycle, c 98.5 1E-06 3.6E-11 98.5 13.9 121 20-163 32-180 (418)
200 3sop_A Neuronal-specific septi 98.5 1.5E-06 5.2E-11 91.7 14.3 120 20-163 3-153 (270)
201 2qag_B Septin-6, protein NEDD5 98.4 1.3E-06 4.3E-11 97.5 12.1 119 18-163 41-189 (427)
202 3ec1_A YQEH GTPase; atnos1, at 98.3 8.6E-08 2.9E-12 106.1 1.6 116 19-163 162-287 (369)
203 2ohf_A Protein OLA1, GTP-bindi 98.3 8.8E-07 3E-11 97.9 7.2 106 12-133 15-128 (396)
204 3h2y_A GTPase family protein; 98.2 2.6E-07 9E-12 102.1 2.6 115 20-163 161-286 (368)
205 2qnr_A Septin-2, protein NEDD5 98.2 5.9E-06 2E-10 88.7 12.4 122 20-163 19-168 (301)
206 2v3c_C SRP54, signal recogniti 98.1 3.1E-06 1.1E-10 95.2 7.5 65 96-163 179-251 (432)
207 2qm8_A GTPase/ATPase; G protei 98.1 1.2E-06 4.1E-11 95.6 3.4 61 96-163 146-206 (337)
208 2xxa_A Signal recognition part 98.1 6.8E-06 2.3E-10 92.5 9.2 136 18-163 99-253 (433)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 9.6E-06 3.3E-10 89.8 9.2 107 12-133 13-127 (392)
210 3kl4_A SRP54, signal recogniti 98.0 9.8E-06 3.4E-10 90.8 8.4 66 96-163 178-251 (433)
211 3dm5_A SRP54, signal recogniti 97.9 2.1E-05 7.1E-10 88.1 9.9 64 97-163 182-252 (443)
212 1j8m_F SRP54, signal recogniti 97.9 4.3E-05 1.5E-09 81.7 10.7 135 19-163 98-252 (297)
213 1f5n_A Interferon-induced guan 97.9 1.4E-05 4.7E-10 92.9 7.2 117 5-147 24-146 (592)
214 2hf9_A Probable hydrogenase ni 97.9 9.6E-06 3.3E-10 82.7 5.3 27 17-43 36-62 (226)
215 1cip_A Protein (guanine nucleo 97.7 4.2E-05 1.4E-09 83.7 6.7 67 97-163 192-273 (353)
216 1zcb_A G alpha I/13; GTP-bindi 97.5 8.6E-05 2.9E-09 81.5 6.2 67 97-163 200-281 (362)
217 4dzz_A Plasmid partitioning pr 97.5 0.00016 5.3E-09 72.4 7.2 64 97-163 75-143 (206)
218 1tq4_A IIGP1, interferon-induc 97.4 0.00037 1.3E-08 77.6 10.1 117 19-165 69-190 (413)
219 1zu4_A FTSY; GTPase, signal re 97.4 0.0003 1E-08 75.9 8.7 65 96-163 190-267 (320)
220 3szr_A Interferon-induced GTP- 97.4 0.00051 1.7E-08 80.8 11.4 66 98-163 147-227 (608)
221 4fid_A G protein alpha subunit 97.4 0.00013 4.3E-09 79.2 5.3 67 97-163 160-241 (340)
222 3ohm_A Guanine nucleotide-bind 97.3 0.00025 8.6E-09 76.5 6.8 67 97-163 166-247 (327)
223 1puj_A YLQF, conserved hypothe 97.3 0.00022 7.5E-09 75.6 5.7 26 18-43 119-144 (282)
224 1azs_C GS-alpha; complex (lyas 97.2 0.00022 7.6E-09 79.0 5.6 67 97-163 216-297 (402)
225 3e1y_E Eukaryotic peptide chai 97.2 0.00041 1.4E-08 69.8 7.1 83 373-471 4-89 (204)
226 3e70_C DPA, signal recognition 97.2 0.00037 1.3E-08 75.4 6.4 65 97-163 211-281 (328)
227 3cnl_A YLQF, putative uncharac 97.1 0.00021 7.2E-09 74.9 3.2 23 20-42 100-122 (262)
228 3cwq_A Para family chromosome 97.1 0.0019 6.6E-08 65.0 10.1 65 97-163 67-133 (209)
229 2yhs_A FTSY, cell division pro 97.0 0.00079 2.7E-08 76.1 7.3 24 19-42 293-316 (503)
230 1vma_A Cell division protein F 97.0 0.00069 2.4E-08 72.5 6.5 25 18-42 103-127 (306)
231 3q5d_A Atlastin-1; G protein, 97.0 0.003 1E-07 70.9 11.8 39 4-42 48-90 (447)
232 2ffh_A Protein (FFH); SRP54, s 97.0 0.00087 3E-08 74.9 7.2 65 96-163 179-250 (425)
233 2px0_A Flagellar biosynthesis 96.9 0.0017 5.9E-08 69.1 8.4 64 96-163 181-252 (296)
234 2xtz_A Guanine nucleotide-bind 96.8 0.00056 1.9E-08 74.8 3.7 68 96-163 181-263 (354)
235 1rj9_A FTSY, signal recognitio 96.8 0.0013 4.4E-08 70.4 6.3 24 19-42 102-125 (304)
236 1ls1_A Signal recognition part 96.6 0.0016 5.6E-08 69.3 5.2 64 97-163 180-250 (295)
237 3end_A Light-independent proto 96.5 0.004 1.4E-07 66.5 7.5 66 96-162 155-225 (307)
238 2cve_A Hypothetical protein TT 96.4 0.0079 2.7E-07 58.9 8.1 110 679-795 80-190 (191)
239 1vi7_A Hypothetical protein YI 96.3 0.008 2.7E-07 60.1 7.9 111 679-795 92-202 (217)
240 1u0l_A Probable GTPase ENGC; p 96.3 0.0013 4.4E-08 70.3 2.4 63 99-163 64-128 (301)
241 1puj_A YLQF, conserved hypothe 96.3 0.0034 1.2E-07 66.4 5.5 60 102-163 3-63 (282)
242 3b9q_A Chloroplast SRP recepto 95.8 0.024 8.3E-07 60.4 9.2 24 19-42 100-123 (302)
243 3ea0_A ATPase, para family; al 95.8 0.018 6.2E-07 58.8 8.0 65 97-163 118-185 (245)
244 2og2_A Putative signal recogni 95.7 0.06 2E-06 58.7 11.9 24 19-42 157-180 (359)
245 3ec1_A YQEH GTPase; atnos1, at 95.6 0.013 4.5E-07 64.3 6.4 62 99-163 50-111 (369)
246 3cnl_A YLQF, putative uncharac 95.1 0.0052 1.8E-07 64.2 1.3 54 106-163 5-59 (262)
247 2yv5_A YJEQ protein; hydrolase 94.7 0.013 4.3E-07 62.6 2.9 56 108-163 66-123 (302)
248 2ph1_A Nucleotide-binding prot 94.7 0.058 2E-06 56.0 7.8 67 96-162 127-194 (262)
249 1t9h_A YLOQ, probable GTPase E 94.6 0.014 4.7E-07 62.3 2.7 22 20-41 174-195 (307)
250 4ido_A Atlastin-1; GTPase, GTP 94.5 0.19 6.4E-06 56.1 11.7 39 4-42 48-90 (457)
251 3h2y_A GTPase family protein; 94.3 0.036 1.2E-06 60.8 5.5 54 108-163 56-109 (368)
252 2yv5_A YJEQ protein; hydrolase 93.9 0.068 2.3E-06 56.9 6.5 21 20-40 166-186 (302)
253 2afh_E Nitrogenase iron protei 93.7 0.17 6E-06 53.0 9.2 66 96-161 117-188 (289)
254 1cp2_A CP2, nitrogenase iron p 93.6 0.2 6.7E-06 51.9 9.3 67 96-162 114-186 (269)
255 1t9h_A YLOQ, probable GTPase E 93.4 0.095 3.3E-06 55.8 6.4 46 118-163 83-130 (307)
256 3l82_B F-box only protein 4; T 93.0 0.1 3.5E-06 52.1 5.5 65 99-163 97-176 (227)
257 1ye8_A Protein THEP1, hypothet 93.0 0.053 1.8E-06 52.9 3.4 24 21-44 2-25 (178)
258 1lvg_A Guanylate kinase, GMP k 92.9 0.049 1.7E-06 54.0 3.1 23 20-42 5-27 (198)
259 1g3q_A MIND ATPase, cell divis 92.8 0.12 4.1E-06 52.3 5.9 66 96-163 110-176 (237)
260 1kgd_A CASK, peripheral plasma 92.7 0.061 2.1E-06 52.4 3.4 24 20-43 6-29 (180)
261 1zp6_A Hypothetical protein AT 92.6 0.068 2.3E-06 52.1 3.6 25 17-41 7-31 (191)
262 1wcv_1 SOJ, segregation protei 92.3 0.27 9.2E-06 50.6 7.9 66 96-163 110-182 (257)
263 1hyq_A MIND, cell division inh 92.3 0.13 4.3E-06 53.2 5.4 65 97-163 110-175 (263)
264 3a00_A Guanylate kinase, GMP k 92.2 0.065 2.2E-06 52.4 2.9 24 20-43 2-25 (186)
265 1knq_A Gluconate kinase; ALFA/ 92.2 0.1 3.4E-06 50.2 4.1 27 18-44 7-33 (175)
266 1u0l_A Probable GTPase ENGC; p 92.0 0.089 3.1E-06 55.9 4.0 21 21-41 171-191 (301)
267 3c8u_A Fructokinase; YP_612366 92.0 0.12 4E-06 51.6 4.6 25 17-41 20-44 (208)
268 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.0 0.099 3.4E-06 43.2 3.4 62 731-795 9-70 (76)
269 3kb2_A SPBC2 prophage-derived 91.9 0.09 3.1E-06 50.1 3.4 25 20-44 2-26 (173)
270 1znw_A Guanylate kinase, GMP k 91.6 0.088 3E-06 52.4 3.2 24 20-43 21-44 (207)
271 3tr0_A Guanylate kinase, GMP k 91.6 0.092 3.1E-06 51.8 3.3 24 20-43 8-31 (205)
272 4eun_A Thermoresistant glucoki 91.6 0.11 3.7E-06 51.4 3.8 36 9-45 20-55 (200)
273 3zq6_A Putative arsenical pump 91.6 0.51 1.8E-05 50.5 9.4 41 123-163 223-264 (324)
274 1xe1_A Hypothetical protein PF 91.6 0.57 1.9E-05 41.7 7.9 50 390-455 48-97 (116)
275 3la6_A Tyrosine-protein kinase 91.5 0.2 7E-06 52.7 6.0 66 97-163 201-267 (286)
276 3bfv_A CAPA1, CAPB2, membrane 91.5 0.22 7.4E-06 52.0 6.1 66 97-163 191-257 (271)
277 1kag_A SKI, shikimate kinase I 91.4 0.11 3.8E-06 49.7 3.5 25 20-44 5-29 (173)
278 3ney_A 55 kDa erythrocyte memb 91.2 0.12 4E-06 51.3 3.6 27 18-44 18-44 (197)
279 1xjc_A MOBB protein homolog; s 91.2 0.12 4.3E-06 49.8 3.5 25 18-42 3-27 (169)
280 1z6g_A Guanylate kinase; struc 91.0 0.11 3.7E-06 52.3 3.2 25 19-43 23-47 (218)
281 1ex7_A Guanylate kinase; subst 90.9 0.12 4.1E-06 50.8 3.2 24 20-43 2-25 (186)
282 1s96_A Guanylate kinase, GMP k 90.9 0.13 4.3E-06 52.0 3.5 24 20-43 17-40 (219)
283 1htw_A HI0065; nucleotide-bind 90.9 0.12 4.2E-06 49.3 3.2 25 19-43 33-57 (158)
284 3lw7_A Adenylate kinase relate 90.8 0.14 4.9E-06 48.6 3.7 24 20-44 2-25 (179)
285 3kjh_A CO dehydrogenase/acetyl 90.7 0.13 4.4E-06 52.4 3.4 65 96-162 130-195 (254)
286 1np6_A Molybdopterin-guanine d 90.7 0.15 5.2E-06 49.4 3.7 24 19-42 6-29 (174)
287 3asz_A Uridine kinase; cytidin 90.7 0.15 5.2E-06 50.6 3.9 24 19-42 6-29 (211)
288 3cio_A ETK, tyrosine-protein k 90.6 0.38 1.3E-05 50.9 7.1 66 97-163 213-279 (299)
289 3q9l_A Septum site-determining 90.6 0.23 8E-06 50.8 5.3 65 97-163 113-186 (260)
290 4gp7_A Metallophosphoesterase; 90.6 0.12 4.2E-06 49.7 3.0 20 20-39 10-29 (171)
291 3tau_A Guanylate kinase, GMP k 90.5 0.14 4.9E-06 51.0 3.5 25 19-43 8-32 (208)
292 3vaa_A Shikimate kinase, SK; s 90.4 0.17 5.7E-06 50.0 3.8 27 18-44 24-50 (199)
293 2f1r_A Molybdopterin-guanine d 90.4 0.082 2.8E-06 51.2 1.5 23 20-42 3-25 (171)
294 2xj4_A MIPZ; replication, cell 90.3 0.15 5.3E-06 53.5 3.7 35 97-133 103-137 (286)
295 2c95_A Adenylate kinase 1; tra 90.3 0.19 6.5E-06 49.0 4.1 26 19-44 9-34 (196)
296 1zd8_A GTP:AMP phosphotransfer 90.2 0.18 6.3E-06 50.8 4.0 27 18-44 6-32 (227)
297 4g1u_C Hemin import ATP-bindin 90.2 0.19 6.6E-06 52.3 4.2 20 20-39 38-57 (266)
298 2if2_A Dephospho-COA kinase; a 90.1 0.15 5.2E-06 50.3 3.3 22 20-41 2-23 (204)
299 1bif_A 6-phosphofructo-2-kinas 90.1 0.13 4.3E-06 58.4 2.9 25 19-43 39-63 (469)
300 2j41_A Guanylate kinase; GMP, 90.0 0.17 5.6E-06 49.9 3.4 23 20-42 7-29 (207)
301 3t61_A Gluconokinase; PSI-biol 89.9 0.18 6E-06 49.8 3.5 26 19-44 18-43 (202)
302 1mv5_A LMRA, multidrug resista 89.9 0.23 7.8E-06 50.9 4.5 21 20-40 29-49 (243)
303 1nks_A Adenylate kinase; therm 89.9 0.18 6.1E-06 48.9 3.5 24 20-43 2-25 (194)
304 2bdt_A BH3686; alpha-beta prot 89.8 0.17 5.8E-06 49.3 3.3 22 20-41 3-24 (189)
305 2pcj_A ABC transporter, lipopr 89.8 0.16 5.5E-06 51.4 3.1 19 21-39 32-50 (224)
306 2bbw_A Adenylate kinase 4, AK4 89.8 0.19 6.5E-06 51.4 3.8 28 19-46 27-54 (246)
307 3tif_A Uncharacterized ABC tra 89.7 0.15 5.1E-06 52.1 2.9 20 20-39 32-51 (235)
308 2oze_A ORF delta'; para, walke 89.7 0.47 1.6E-05 49.8 6.9 66 96-163 153-225 (298)
309 3k9g_A PF-32 protein; ssgcid, 89.7 0.4 1.4E-05 49.5 6.2 66 96-163 143-210 (267)
310 3lnc_A Guanylate kinase, GMP k 89.7 0.11 3.8E-06 52.6 1.8 23 20-42 28-51 (231)
311 2qor_A Guanylate kinase; phosp 89.6 0.18 6.1E-06 50.0 3.3 25 19-43 12-36 (204)
312 1uf9_A TT1252 protein; P-loop, 89.5 0.26 8.8E-06 48.3 4.3 25 18-42 7-31 (203)
313 3trf_A Shikimate kinase, SK; a 89.4 0.21 7.2E-06 48.3 3.6 26 19-44 5-30 (185)
314 1ukz_A Uridylate kinase; trans 89.3 0.26 9E-06 48.5 4.3 28 17-44 13-40 (203)
315 2onk_A Molybdate/tungstate ABC 89.3 0.17 5.8E-06 51.8 2.9 22 20-41 25-46 (240)
316 1jjv_A Dephospho-COA kinase; P 89.2 0.2 6.8E-06 49.5 3.3 22 20-41 3-24 (206)
317 3l2o_B F-box only protein 4; s 89.2 0.55 1.9E-05 49.1 6.6 57 107-163 196-261 (312)
318 1ly1_A Polynucleotide kinase; 89.1 0.21 7.2E-06 47.9 3.3 22 20-41 3-24 (181)
319 1via_A Shikimate kinase; struc 89.0 0.22 7.5E-06 47.9 3.3 25 20-44 5-29 (175)
320 2qt1_A Nicotinamide riboside k 89.0 0.23 7.9E-06 49.1 3.6 28 15-42 17-44 (207)
321 3b85_A Phosphate starvation-in 89.0 0.18 6.2E-06 50.4 2.8 22 21-42 24-45 (208)
322 1cke_A CK, MSSA, protein (cyti 89.0 0.23 7.9E-06 49.8 3.6 25 20-44 6-30 (227)
323 2jeo_A Uridine-cytidine kinase 88.9 0.21 7.3E-06 51.0 3.4 27 19-45 25-51 (245)
324 2bwj_A Adenylate kinase 5; pho 88.9 0.15 5.1E-06 49.9 2.1 25 20-44 13-37 (199)
325 2i3b_A HCR-ntpase, human cance 88.9 0.21 7.1E-06 49.2 3.1 23 21-43 3-25 (189)
326 3ec2_A DNA replication protein 88.9 0.19 6.6E-06 48.5 2.9 24 19-42 38-61 (180)
327 2eyu_A Twitching motility prot 88.9 0.22 7.6E-06 51.7 3.5 25 18-42 24-48 (261)
328 3pfi_A Holliday junction ATP-d 88.8 3.5 0.00012 43.8 13.1 26 17-42 53-78 (338)
329 1b0u_A Histidine permease; ABC 88.6 0.2 7E-06 52.0 2.9 20 20-39 33-52 (262)
330 3tlx_A Adenylate kinase 2; str 88.5 0.39 1.3E-05 49.1 5.0 29 17-45 27-55 (243)
331 2jaq_A Deoxyguanosine kinase; 88.5 0.27 9.1E-06 48.2 3.6 24 21-44 2-25 (205)
332 1g6h_A High-affinity branched- 88.5 0.2 7E-06 51.8 2.9 20 20-39 34-53 (257)
333 2v9p_A Replication protein E1; 88.5 0.3 1E-05 51.8 4.2 26 17-42 124-149 (305)
334 2pze_A Cystic fibrosis transme 88.4 0.23 7.8E-06 50.5 3.1 20 20-39 35-54 (229)
335 1qhx_A CPT, protein (chloramph 88.4 0.28 9.7E-06 47.0 3.7 25 20-44 4-28 (178)
336 2rcn_A Probable GTPase ENGC; Y 88.4 0.23 7.9E-06 53.9 3.3 23 20-42 216-238 (358)
337 2cbz_A Multidrug resistance-as 88.4 0.23 7.7E-06 50.8 3.1 20 20-39 32-51 (237)
338 3gfo_A Cobalt import ATP-bindi 88.4 0.21 7.2E-06 52.2 2.9 19 21-39 36-54 (275)
339 1sgw_A Putative ABC transporte 88.4 0.22 7.5E-06 50.0 2.9 19 21-39 37-55 (214)
340 2d2e_A SUFC protein; ABC-ATPas 88.3 0.23 7.8E-06 51.2 3.1 21 21-41 31-51 (250)
341 3cm0_A Adenylate kinase; ATP-b 88.2 0.31 1.1E-05 47.1 3.9 25 20-44 5-29 (186)
342 3aez_A Pantothenate kinase; tr 88.2 0.31 1E-05 52.0 4.1 25 17-41 88-112 (312)
343 3dl0_A Adenylate kinase; phosp 88.2 0.3 1E-05 48.6 3.9 25 21-45 2-26 (216)
344 1ji0_A ABC transporter; ATP bi 88.1 0.22 7.7E-06 50.9 2.9 20 20-39 33-52 (240)
345 3fb4_A Adenylate kinase; psych 88.1 0.3 1E-05 48.6 3.7 25 21-45 2-26 (216)
346 2ff7_A Alpha-hemolysin translo 88.0 0.24 8.3E-06 50.9 3.1 20 20-39 36-55 (247)
347 2rhm_A Putative kinase; P-loop 88.0 0.36 1.2E-05 46.8 4.2 26 19-44 5-30 (193)
348 1y63_A LMAJ004144AAA protein; 88.0 0.34 1.2E-05 47.0 4.0 25 18-42 9-33 (184)
349 2ghi_A Transport protein; mult 87.8 0.25 8.7E-06 51.2 3.1 21 20-40 47-67 (260)
350 3jvv_A Twitching mobility prot 87.8 0.37 1.3E-05 52.4 4.5 23 20-42 124-146 (356)
351 2olj_A Amino acid ABC transpor 87.8 0.26 8.9E-06 51.2 3.1 20 20-39 51-70 (263)
352 3iij_A Coilin-interacting nucl 87.8 0.31 1.1E-05 47.0 3.5 27 18-44 10-36 (180)
353 2zu0_C Probable ATP-dependent 87.7 0.25 8.5E-06 51.4 2.9 20 21-40 48-67 (267)
354 1kht_A Adenylate kinase; phosp 87.6 0.28 9.7E-06 47.4 3.2 24 20-43 4-27 (192)
355 4a74_A DNA repair and recombin 87.6 0.29 1E-05 48.9 3.3 37 6-42 11-48 (231)
356 2wwf_A Thymidilate kinase, put 87.6 0.3 1E-05 48.3 3.3 24 19-42 10-33 (212)
357 2ehv_A Hypothetical protein PH 87.6 0.27 9.2E-06 49.9 3.1 21 20-40 31-51 (251)
358 3uie_A Adenylyl-sulfate kinase 87.5 0.32 1.1E-05 47.9 3.5 26 18-43 24-49 (200)
359 1vpl_A ABC transporter, ATP-bi 87.5 0.28 9.5E-06 50.7 3.1 20 20-39 42-61 (256)
360 1tev_A UMP-CMP kinase; ploop, 87.5 0.36 1.2E-05 46.8 3.9 25 20-44 4-28 (196)
361 2qi9_C Vitamin B12 import ATP- 87.5 0.28 9.6E-06 50.5 3.1 19 21-39 28-46 (249)
362 3zvl_A Bifunctional polynucleo 87.4 1.1 3.8E-05 49.7 8.2 25 18-42 257-281 (416)
363 1zuh_A Shikimate kinase; alpha 87.1 0.37 1.3E-05 45.8 3.6 27 18-44 6-32 (168)
364 2yz2_A Putative ABC transporte 87.1 0.29 1E-05 50.8 3.1 20 20-39 34-53 (266)
365 3kta_A Chromosome segregation 87.1 0.38 1.3E-05 46.4 3.7 24 21-44 28-51 (182)
366 1byi_A Dethiobiotin synthase; 87.1 1.6 5.5E-05 43.4 8.5 67 97-163 108-180 (224)
367 2ihy_A ABC transporter, ATP-bi 87.1 0.3 1E-05 51.2 3.1 19 21-39 49-67 (279)
368 2ixe_A Antigen peptide transpo 87.0 0.3 1E-05 50.9 3.1 20 20-39 46-65 (271)
369 2kjq_A DNAA-related protein; s 87.0 0.28 9.5E-06 46.2 2.5 25 18-42 35-59 (149)
370 2nq2_C Hypothetical ABC transp 87.0 0.29 9.8E-06 50.5 2.9 19 21-39 33-51 (253)
371 1nij_A Hypothetical protein YJ 86.9 0.34 1.2E-05 51.7 3.6 25 18-42 3-27 (318)
372 2ze6_A Isopentenyl transferase 86.9 0.39 1.3E-05 49.4 3.9 25 20-44 2-26 (253)
373 1rz3_A Hypothetical protein rb 86.9 0.44 1.5E-05 47.0 4.1 25 17-41 20-44 (201)
374 1uj2_A Uridine-cytidine kinase 86.8 0.41 1.4E-05 49.1 4.0 27 18-44 21-47 (252)
375 4e22_A Cytidylate kinase; P-lo 86.8 0.39 1.3E-05 49.3 3.8 27 19-45 27-53 (252)
376 1qf9_A UMP/CMP kinase, protein 86.8 0.48 1.6E-05 45.8 4.3 26 19-44 6-31 (194)
377 3tqc_A Pantothenate kinase; bi 86.7 0.37 1.3E-05 51.5 3.7 26 18-43 91-116 (321)
378 2gza_A Type IV secretion syste 86.5 0.3 1E-05 53.2 2.9 23 20-42 176-198 (361)
379 2oap_1 GSPE-2, type II secreti 86.5 0.3 1E-05 55.8 2.9 24 19-42 260-283 (511)
380 1jbk_A CLPB protein; beta barr 86.5 0.64 2.2E-05 44.4 5.0 25 18-42 42-66 (195)
381 2plr_A DTMP kinase, probable t 86.5 0.44 1.5E-05 46.9 3.8 25 20-44 5-29 (213)
382 4fcw_A Chaperone protein CLPB; 86.4 1.2 3.9E-05 46.9 7.4 23 20-42 48-70 (311)
383 1aky_A Adenylate kinase; ATP:A 86.4 0.43 1.5E-05 47.7 3.8 26 19-44 4-29 (220)
384 2vli_A Antibiotic resistance p 86.4 0.33 1.1E-05 46.7 2.8 26 19-44 5-30 (183)
385 1odf_A YGR205W, hypothetical 3 86.3 0.46 1.6E-05 50.1 4.0 26 17-42 29-54 (290)
386 3umf_A Adenylate kinase; rossm 86.3 0.54 1.8E-05 47.2 4.4 30 17-46 27-56 (217)
387 1e6c_A Shikimate kinase; phosp 86.2 0.39 1.3E-05 45.7 3.2 25 20-44 3-27 (173)
388 1zak_A Adenylate kinase; ATP:A 86.1 0.42 1.4E-05 47.8 3.6 26 19-44 5-30 (222)
389 1sq5_A Pantothenate kinase; P- 86.0 0.48 1.6E-05 50.3 4.1 26 17-42 78-103 (308)
390 2yvu_A Probable adenylyl-sulfa 86.0 0.47 1.6E-05 46.0 3.7 25 18-42 12-36 (186)
391 2pt7_A CAG-ALFA; ATPase, prote 86.0 0.29 9.8E-06 52.7 2.3 23 20-42 172-194 (330)
392 2v54_A DTMP kinase, thymidylat 85.9 0.39 1.3E-05 47.1 3.1 23 20-42 5-27 (204)
393 2pjz_A Hypothetical protein ST 85.8 0.38 1.3E-05 49.9 3.1 19 21-39 32-50 (263)
394 2cdn_A Adenylate kinase; phosp 85.7 0.54 1.8E-05 46.2 4.1 27 18-44 19-45 (201)
395 3tui_C Methionine import ATP-b 85.7 0.36 1.2E-05 52.5 2.9 21 20-40 55-75 (366)
396 2v1u_A Cell division control p 85.6 2.4 8.1E-05 45.7 9.6 26 17-42 42-67 (387)
397 2iyv_A Shikimate kinase, SK; t 85.6 0.42 1.4E-05 46.2 3.1 25 20-44 3-27 (184)
398 2bbs_A Cystic fibrosis transme 85.6 0.41 1.4E-05 50.4 3.2 20 20-39 65-84 (290)
399 2pt5_A Shikimate kinase, SK; a 85.6 0.51 1.8E-05 44.7 3.7 24 21-44 2-25 (168)
400 1e4v_A Adenylate kinase; trans 85.5 0.51 1.7E-05 46.9 3.8 24 21-44 2-25 (214)
401 1ihu_A Arsenical pump-driving 85.5 0.94 3.2E-05 52.7 6.6 43 121-163 489-532 (589)
402 1f2t_A RAD50 ABC-ATPase; DNA d 85.5 0.46 1.6E-05 44.6 3.2 23 21-43 25-47 (149)
403 3fvq_A Fe(3+) IONS import ATP- 85.4 0.39 1.3E-05 52.1 3.0 22 20-41 31-52 (359)
404 2pbr_A DTMP kinase, thymidylat 85.4 0.43 1.5E-05 46.2 3.1 21 21-41 2-22 (195)
405 2wbm_A MTHSBDS, ribosome matur 85.4 1.3 4.4E-05 45.1 6.5 69 726-796 181-249 (252)
406 2ewv_A Twitching motility prot 85.3 0.43 1.5E-05 52.2 3.3 24 19-42 136-159 (372)
407 3sr0_A Adenylate kinase; phosp 85.1 0.52 1.8E-05 46.9 3.6 26 21-46 2-27 (206)
408 1gtv_A TMK, thymidylate kinase 85.1 0.26 8.8E-06 48.9 1.3 23 21-43 2-24 (214)
409 2chg_A Replication factor C sm 85.0 4.2 0.00014 39.5 10.4 25 18-42 37-61 (226)
410 1nn5_A Similar to deoxythymidy 85.0 0.5 1.7E-05 46.7 3.4 24 19-42 9-32 (215)
411 1lw7_A Transcriptional regulat 85.0 0.41 1.4E-05 52.2 3.0 25 19-43 170-194 (365)
412 2vhj_A Ntpase P4, P4; non- hyd 84.9 0.81 2.8E-05 48.7 5.1 23 20-42 124-146 (331)
413 2pez_A Bifunctional 3'-phospho 84.8 0.52 1.8E-05 45.3 3.3 24 19-42 5-28 (179)
414 1z47_A CYSA, putative ABC-tran 84.6 0.43 1.5E-05 51.8 2.9 21 20-40 42-62 (355)
415 1hqc_A RUVB; extended AAA-ATPa 84.5 3.8 0.00013 43.1 10.4 25 18-42 37-61 (324)
416 1ak2_A Adenylate kinase isoenz 84.5 0.61 2.1E-05 47.1 3.9 27 18-44 15-41 (233)
417 2f6r_A COA synthase, bifunctio 84.5 0.6 2E-05 48.9 3.8 23 18-40 74-96 (281)
418 2yyz_A Sugar ABC transporter, 84.4 0.44 1.5E-05 51.8 2.9 21 20-40 30-50 (359)
419 2p5t_B PEZT; postsegregational 84.4 0.61 2.1E-05 47.9 3.9 28 17-44 30-57 (253)
420 3nwj_A ATSK2; P loop, shikimat 84.4 0.52 1.8E-05 48.5 3.3 26 19-44 48-73 (250)
421 3nh6_A ATP-binding cassette SU 84.4 0.32 1.1E-05 51.7 1.7 22 20-41 81-102 (306)
422 2x8a_A Nuclear valosin-contain 84.3 0.59 2E-05 48.7 3.7 24 20-43 45-68 (274)
423 3a4m_A L-seryl-tRNA(SEC) kinas 84.3 0.55 1.9E-05 48.5 3.4 24 19-42 4-27 (260)
424 2w58_A DNAI, primosome compone 84.2 0.82 2.8E-05 44.8 4.6 23 20-42 55-77 (202)
425 1vht_A Dephospho-COA kinase; s 84.2 0.59 2E-05 46.5 3.6 22 20-41 5-26 (218)
426 2it1_A 362AA long hypothetical 84.2 0.46 1.6E-05 51.7 2.9 22 20-41 30-51 (362)
427 1sxj_A Activator 1 95 kDa subu 84.1 3 0.0001 47.5 10.0 26 19-44 77-102 (516)
428 3bos_A Putative DNA replicatio 84.0 0.85 2.9E-05 45.6 4.7 25 18-42 51-75 (242)
429 1gvn_B Zeta; postsegregational 83.9 0.66 2.3E-05 48.7 3.9 26 18-43 32-57 (287)
430 1ixz_A ATP-dependent metallopr 83.8 0.63 2.1E-05 47.6 3.6 24 20-43 50-73 (254)
431 1g29_1 MALK, maltose transport 83.8 0.48 1.6E-05 51.8 2.9 21 20-40 30-50 (372)
432 3rlf_A Maltose/maltodextrin im 83.8 0.49 1.7E-05 51.8 2.9 20 21-40 31-50 (381)
433 1v43_A Sugar-binding transport 83.8 0.49 1.7E-05 51.7 2.9 22 20-41 38-59 (372)
434 2w0m_A SSO2452; RECA, SSPF, un 83.8 0.76 2.6E-05 45.8 4.2 36 6-41 9-45 (235)
435 2z0h_A DTMP kinase, thymidylat 83.8 0.52 1.8E-05 45.9 2.9 21 21-41 2-22 (197)
436 1p9r_A General secretion pathw 83.7 0.59 2E-05 51.9 3.6 34 8-43 158-191 (418)
437 2p65_A Hypothetical protein PF 83.7 0.77 2.6E-05 43.7 4.0 26 17-42 41-66 (187)
438 1tue_A Replication protein E1; 83.7 0.73 2.5E-05 45.8 3.8 34 9-42 48-81 (212)
439 2grj_A Dephospho-COA kinase; T 83.5 0.81 2.8E-05 45.0 4.1 28 17-44 10-37 (192)
440 3be4_A Adenylate kinase; malar 83.4 0.72 2.4E-05 46.0 3.8 25 20-44 6-30 (217)
441 3n70_A Transport activator; si 83.2 2 6.7E-05 39.8 6.5 24 18-41 23-46 (145)
442 3syl_A Protein CBBX; photosynt 82.9 2 6.8E-05 45.0 7.3 26 17-42 65-90 (309)
443 2xb4_A Adenylate kinase; ATP-b 82.8 0.76 2.6E-05 46.1 3.7 24 21-44 2-25 (223)
444 3hr8_A Protein RECA; alpha and 82.8 1.2 4.3E-05 48.1 5.6 35 8-42 48-84 (356)
445 1njg_A DNA polymerase III subu 82.7 1 3.5E-05 44.7 4.6 25 19-43 45-69 (250)
446 2vp4_A Deoxynucleoside kinase; 82.6 0.57 1.9E-05 47.3 2.6 24 18-41 19-42 (230)
447 1t95_A Hypothetical protein AF 82.3 1.6 5.5E-05 44.1 5.7 68 728-797 168-235 (240)
448 3gd7_A Fusion complex of cysti 82.2 0.63 2.2E-05 51.1 3.0 21 20-40 48-68 (390)
449 3d31_A Sulfate/molybdate ABC t 82.2 0.42 1.5E-05 51.7 1.6 21 20-40 27-47 (348)
450 1iy2_A ATP-dependent metallopr 82.0 0.82 2.8E-05 47.5 3.7 24 20-43 74-97 (278)
451 1m7g_A Adenylylsulfate kinase; 82.0 0.93 3.2E-05 44.9 4.0 25 17-41 23-47 (211)
452 3qf7_A RAD50; ABC-ATPase, ATPa 81.9 0.7 2.4E-05 50.4 3.2 22 21-42 25-46 (365)
453 1svm_A Large T antigen; AAA+ f 81.8 1.1 3.9E-05 48.8 4.9 26 17-42 167-192 (377)
454 1d1n_A Initiation factor 2; be 81.7 2.5 8.5E-05 36.5 5.9 60 385-455 16-75 (99)
455 1q3t_A Cytidylate kinase; nucl 81.6 0.92 3.1E-05 45.9 3.8 28 17-44 14-41 (236)
456 2npi_A Protein CLP1; CLP1-PCF1 81.5 0.74 2.5E-05 51.8 3.3 23 20-42 139-161 (460)
457 3cmu_A Protein RECA, recombina 81.5 3.2 0.00011 54.5 9.5 35 9-43 1415-1451(2050)
458 2cvh_A DNA repair and recombin 81.4 1.2 3.9E-05 44.1 4.4 36 6-41 6-42 (220)
459 3r20_A Cytidylate kinase; stru 81.1 0.94 3.2E-05 46.0 3.6 25 20-44 10-34 (233)
460 2ga8_A Hypothetical 39.9 kDa p 81.0 1 3.5E-05 48.6 4.0 27 17-43 22-48 (359)
461 1in4_A RUVB, holliday junction 80.7 0.87 3E-05 48.9 3.4 26 19-44 51-76 (334)
462 3h4m_A Proteasome-activating n 80.7 1.2 4.1E-05 46.2 4.4 27 17-43 49-75 (285)
463 1lv7_A FTSH; alpha/beta domain 80.6 0.95 3.3E-05 46.3 3.6 25 19-43 45-69 (257)
464 3ake_A Cytidylate kinase; CMP 80.6 0.97 3.3E-05 44.3 3.5 24 21-44 4-27 (208)
465 1oxx_K GLCV, glucose, ABC tran 80.5 0.42 1.4E-05 51.8 0.8 21 20-40 32-52 (353)
466 3fkq_A NTRC-like two-domain pr 80.3 2.4 8E-05 46.2 6.8 36 96-133 258-293 (373)
467 2obl_A ESCN; ATPase, hydrolase 80.2 0.99 3.4E-05 48.8 3.6 24 20-43 72-95 (347)
468 3euj_A Chromosome partition pr 80.0 0.87 3E-05 51.4 3.2 23 20-42 30-52 (483)
469 1cr0_A DNA primase/helicase; R 79.8 1.3 4.6E-05 46.3 4.5 34 9-42 25-58 (296)
470 1n0w_A DNA repair protein RAD5 79.8 1.2 4.1E-05 44.8 3.9 37 6-42 10-47 (243)
471 4eaq_A DTMP kinase, thymidylat 79.7 1.2 3.9E-05 45.1 3.7 26 18-43 25-50 (229)
472 3foz_A TRNA delta(2)-isopenten 79.6 1.4 4.7E-05 46.7 4.3 27 18-44 9-35 (316)
473 3d3q_A TRNA delta(2)-isopenten 79.2 1.3 4.3E-05 47.7 4.0 25 20-44 8-32 (340)
474 3u61_B DNA polymerase accessor 78.9 7.6 0.00026 40.9 10.2 25 19-43 47-72 (324)
475 3cf0_A Transitional endoplasmi 78.9 1.4 4.9E-05 46.3 4.4 26 18-43 48-73 (301)
476 2rcn_A Probable GTPase ENGC; Y 78.8 1.9 6.4E-05 46.7 5.3 44 118-163 127-173 (358)
477 3qks_A DNA double-strand break 78.6 1.1 3.9E-05 44.2 3.2 25 20-44 24-48 (203)
478 2qby_A CDC6 homolog 1, cell di 78.5 1.6 5.4E-05 47.1 4.7 26 17-42 43-68 (386)
479 2b8t_A Thymidine kinase; deoxy 78.3 1.7 5.8E-05 43.8 4.4 41 123-163 89-129 (223)
480 1ltq_A Polynucleotide kinase; 78.2 1.1 3.9E-05 46.8 3.3 23 20-42 3-25 (301)
481 3crm_A TRNA delta(2)-isopenten 77.8 1.5 5.1E-05 46.8 4.0 25 20-44 6-30 (323)
482 2dpy_A FLII, flagellum-specifi 77.4 1.3 4.5E-05 49.5 3.6 24 20-43 158-181 (438)
483 1l8q_A Chromosomal replication 77.3 1.7 5.6E-05 46.2 4.3 34 9-42 26-60 (324)
484 3b5x_A Lipid A export ATP-bind 77.0 1.1 3.8E-05 52.1 3.0 22 20-41 370-391 (582)
485 3pvs_A Replication-associated 77.0 8.8 0.0003 42.8 10.3 26 18-43 49-74 (447)
486 1yqt_A RNAse L inhibitor; ATP- 76.9 1.2 4E-05 51.3 3.1 22 20-41 48-69 (538)
487 3b60_A Lipid A export ATP-bind 76.7 1.2 4.2E-05 51.6 3.3 21 20-40 370-390 (582)
488 1nlf_A Regulatory protein REPA 76.6 1.4 4.9E-05 45.7 3.5 22 20-41 31-52 (279)
489 3qkt_A DNA double-strand break 76.4 1.3 4.5E-05 47.5 3.2 22 21-42 25-46 (339)
490 1sxj_E Activator 1 40 kDa subu 76.2 1.6 5.3E-05 46.9 3.8 24 18-41 35-58 (354)
491 3cr8_A Sulfate adenylyltranfer 76.2 1.7 5.8E-05 50.0 4.2 26 18-43 368-393 (552)
492 2kdo_A Ribosome maturation pro 76.0 0.75 2.6E-05 46.9 1.0 67 728-797 172-238 (252)
493 1p5z_B DCK, deoxycytidine kina 75.8 0.95 3.3E-05 46.6 1.8 24 18-41 23-46 (263)
494 3tqf_A HPR(Ser) kinase; transf 75.7 2.5 8.5E-05 40.7 4.5 22 20-41 17-38 (181)
495 2ocp_A DGK, deoxyguanosine kin 75.6 1.7 5.7E-05 44.0 3.6 24 20-43 3-26 (241)
496 3ozx_A RNAse L inhibitor; ATP 75.6 1.3 4.3E-05 51.0 2.9 23 19-41 25-47 (538)
497 3j16_B RLI1P; ribosome recycli 75.3 1.3 4.4E-05 51.7 2.9 22 20-41 104-125 (608)
498 1a7j_A Phosphoribulokinase; tr 75.3 0.89 3E-05 47.8 1.4 24 19-42 5-28 (290)
499 2qz4_A Paraplegin; AAA+, SPG7, 75.1 1.8 6.1E-05 44.0 3.7 25 18-42 38-62 (262)
500 3ez9_A Para; DNA binding, wing 75.0 3.4 0.00012 45.4 6.1 65 96-162 246-322 (403)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=5.9e-156 Score=1421.21 Aligned_cols=840 Identities=63% Similarity=1.040 Sum_probs=753.2
Q ss_pred CcccCHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe
Q 003165 1 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|++++.+++.++|..++++|||+|+||+|||||||+++|++.+|.+.+...|.++++|+.++|++||+|+.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp --CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEE
T ss_pred CcccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEec
Confidence 78899999999999889999999999999999999999999999887765666789999999999999999999988886
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECC
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKi 160 (843)
........+....+++++.+||||||||.||..++.++++.+|+||+|+|+++|++.||..+|+++...++|+++|+||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 21110001111224457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHH
Q 003165 161 DRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|+...+++.++++++..+++++++++..+..+.+...+.+.++|..++|+|+|+.+||+|++.+|+..|+++|+++...+
T Consensus 161 D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l 240 (842)
T 1n0u_A 161 DRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240 (842)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHH
T ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHH
Confidence 99988888999999999999999999998766544444556789999999999999999999999999999999999999
Q ss_pred HHHhhcCcccCcCCCceeecC-C-CcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHH
Q 003165 241 MERLWGENFFDPATKKWTTKN-T-GSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALM 318 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
.+++||+.||++++++|...+ + .....++.|++++++|+|+|++++++.|+++|++||+++|++++.+|++...+.|+
T Consensus 241 ~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~ 320 (842)
T 1n0u_A 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALL 320 (842)
T ss_dssp HHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHH
T ss_pred HHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHH
Confidence 999999999988777777643 2 11245789999999999999999999999999999999999999999887889999
Q ss_pred HHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 319 KRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
++++++|+|++++|||+|++|+|||.+++.++...+|.|+.+++....++.|++++|++|+|||+..+++.|++++|+||
T Consensus 321 ~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 321 KVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred HHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 99999999999999999999999999998888887777654433334567899999999999999999999978999999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccceeeecCCCCCcccc
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPI 478 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTl~~~~~~~~~~~ 478 (843)
|||+|++|+.|+++++++++++.+++..+||++||+++|+++++|++|+|||||+|.||+++.++|||||+.. .+.++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~--~~~~l 478 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSE--TAHNM 478 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCT--TCCCB
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCC--Ccccc
Confidence 9999999999999988877665443445899999999999999999999999999999999988889999876 67788
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCCCcEEEEe
Q 003165 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
+++.++.+|+++++|+|++++|++||.+||++|.+|||+|+++++||||++|+||||||||||++||+++|+ |+++.++
T Consensus 479 ~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~-~vev~~~ 557 (842)
T 1n0u_A 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHA-GVPLKIS 557 (842)
T ss_dssp CCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTS-CSCEEEE
T ss_pred ccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhc-CCceEec
Confidence 899887579999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred ccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEec
Q 003165 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 638 (843)
+|+|+|||||+++++..++.+++++|+++++++|||++++...++.|.+...++.+.+.+.|..+|+||..+++++|+||
T Consensus 558 ~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~ 637 (842)
T 1n0u_A 558 PPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFG 637 (842)
T ss_dssp CCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEES
T ss_pred CcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeec
Confidence 99999999999999888888999999999999999999999999999888778888899999999999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHH
Q 003165 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al 718 (843)
|+..|+|+|+|.++|++++++++++|++||+||+++|||||+||+||+|+|+|+++|.|+++++++||++|+++||++|+
T Consensus 638 p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~ 717 (842)
T 1n0u_A 638 PDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717 (842)
T ss_dssp STTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHH
Confidence 98788999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeE
Q 003165 719 LTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|+|+||++++|+||+||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 718 ~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~ 797 (842)
T 1n0u_A 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 797 (842)
T ss_dssp HHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred HhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEE
Confidence 99999999999999999999999999999999999999999877767899999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchHHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003165 799 FDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 843 (843)
Q Consensus 799 f~~y~~v~~~~~~~~~~a~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
|+||++||+||++++|+|++|++++||||||++++|.+.+|+|+|
T Consensus 798 F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 798 FDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp EEEEEECCSCTTCTTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred eccceeCCCCccchhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 999999999999999999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.9e-123 Score=1115.03 Aligned_cols=671 Identities=28% Similarity=0.389 Sum_probs=527.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc--cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
++||||||+||+|||||||+++||+.+|.+.+. ..+..+++|++++|++|||||+++.+++.|.. ...+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~~~~ 81 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------SRGQ 81 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC---------TTSC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------CcCC
Confidence 689999999999999999999999999988762 11225799999999999999999999999962 1223
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHH
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~ 174 (843)
.++++|||||||||+||..|+.++|+++||||+||||++|+++||+.+|++|.++++|+++|||||||. ++++..
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~~~~- 156 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GANFLR- 156 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCCHHH-
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----CccHHH-
Confidence 458999999999999999999999999999999999999999999999999999999999999999999 887444
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCc
Q 003165 175 YQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
.+++++..+.. .|...++|++++ +.|+ +|...+..++|++...
T Consensus 157 ------~~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~----------------vd~~~~~~~~~~~~~~-- 201 (709)
T 4fn5_A 157 ------VVEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ----------------VDLIKMKAIYWNDDDK-- 201 (709)
T ss_dssp ------HHHHHHHHHCS-----------CEEESEEEESSSTTCCEE----------------EETTTTEEEEEEC--C--
T ss_pred ------HHHHhhhhccc-----------ceeeeecccCchhccceE----------------EEEeeeeEEEeecccC--
Confidence 44444444431 234446666654 4444 3334444566654321
Q ss_pred CCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc---
Q 003165 253 ATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA--- 328 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (843)
...+... .....+.+.....+..+++.+++.|++++++|+++ .+++.+++. ..+.+++. .+++|+
T Consensus 202 -g~~~~~~-----~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 202 -GMTYREE-----EIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp -CCEEEEC-----CCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEEC
T ss_pred -Cceeccc-----cccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeeee
Confidence 1122221 12233333344445688999999999999999998 577777775 45555554 578885
Q ss_pred -------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEee
Q 003165 329 -------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
Q Consensus 329 -------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SG 401 (843)
++.|||+|++++|+|.+++..+.... +++.....+.||+++|++++|||+.++++.|. ++|+|||||
T Consensus 271 sa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~-----~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sG 344 (709)
T 4fn5_A 271 SSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSP-----DDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSG 344 (709)
T ss_dssp BTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCC-----C-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEES
T ss_pred ecccCCchHHHHHHHHhhCCCCcccccccccCC-----ccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccCC
Confidence 78899999999999998776544321 23334567789999999999999999999887 999999999
Q ss_pred EEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccccc
Q 003165 402 KVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRA 480 (843)
Q Consensus 402 tL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~ 480 (843)
+|++||.|++ .+++++ +++++++.++|++++++++|+|||||+|.|++++ .+| |||+.. .+..+++
T Consensus 345 tl~~G~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~--~~~~~~~ 411 (709)
T 4fn5_A 345 VLSSGDSVLN----SVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIE--KPIILER 411 (709)
T ss_dssp CEETTCBCBC----TTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSS--SCCBCC-
T ss_pred CCCCCCEEEE----ecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCC--ccccCCC
Confidence 9999999994 444444 7999999999999999999999999999999987 566 999887 6777888
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEec
Q 003165 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 481 ~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
+.++ +|+++++|+|.+++|++||.+||++|.+|||+++++.+ +|||++|+||||||||||++||+++| |+++.+++
T Consensus 412 ~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs~ 488 (709)
T 4fn5_A 412 MDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGK 488 (709)
T ss_dssp ---C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCBC
T ss_pred CCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEee
Confidence 8886 99999999999999999999999999999999999986 99999999999999999999999999 99999999
Q ss_pred cEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcC--CchhccceEEEe
Q 003165 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFG--WDKDLAKKIWCF 637 (843)
Q Consensus 560 p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~--~~~~~~~~v~~~ 637 (843)
|+|+|||||++.+. +..++|++ ++|+. +||+ |.......+|.+
T Consensus 489 P~V~yrETi~~~~~-----~~~~~~~k----------------~~~~~--------------~~~~~~~~~~~~~~~~e~ 533 (709)
T 4fn5_A 489 PQVAYRETITKDNV-----EIEGKFVR----------------QSGGR--------------GQFGHCWIRFSAADVDEK 533 (709)
T ss_dssp CCCCCEEECCCCSE-----EEEEEEEE----------------EETTE--------------EEEEEEEEEEECCCBC-C
T ss_pred ceEEEEEEEecCCc-----eecceeee----------------ccCCc--------------CcceeEEEEEeecccccc
Confidence 99999999987542 22334433 33331 3333 211122223333
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHH
Q 003165 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 638 ~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~a 717 (843)
||. ..++.|.|++.|+.++++++++|++||+||+++|||||+||+||+|+|.|+++|.+.++. +.+..|+++||++|
T Consensus 534 g~~-~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~--~~f~~a~~~a~~~a 610 (709)
T 4fn5_A 534 GNI-TEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNE--MAFKIAASMATKQL 610 (709)
T ss_dssp CCB-CCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCH--HHHHHHHHHHHHTH
T ss_pred CCC-cCceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCCh--HHHHHHHHHHHHHH
Confidence 433 235899999999999999999999999999999999999999999999999999733332 23446999999999
Q ss_pred HHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 718 QLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 718 l~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||.|+|+||++++|+||++|++|||+|++++..++ ..+|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 611 ~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 611 AQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp HHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred HHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 9999999999999999999999999999999999999999987764 67899999999999999999999999999999
Q ss_pred EecceeecCCCC
Q 003165 798 VFDHWDMMSSDP 809 (843)
Q Consensus 798 ~f~~y~~v~~~~ 809 (843)
+|+||++||+|+
T Consensus 689 ~F~~y~~vp~~~ 700 (709)
T 4fn5_A 689 EFSKYAEAPSNI 700 (709)
T ss_dssp CEEEEEECCHHH
T ss_pred EECCcccCCcCH
Confidence 999999999985
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.2e-114 Score=1035.27 Aligned_cols=671 Identities=28% Similarity=0.372 Sum_probs=562.8
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc---cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.++++|||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|+.++..++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45689999999999999999999999998877652 122 47899999999999999999988888610
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCH
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (843)
..+++.+.+||||||||.||..++.++++.+|+||+|+|+++|++.||+.+|+++...++|+++|+||+|+. .+++
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~~ 151 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GANF 151 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----cccH
Confidence 012345899999999999999999999999999999999999999999999999999999999999999998 7764
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeeccc--CccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
+++. ++++..+.. .+...++|++. .+.|+ +|+..+.+++|.+.
T Consensus 152 ~~~~-------~~l~~~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~- 196 (704)
T 2rdo_7 152 LKVV-------NQIKTRLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA- 196 (704)
T ss_pred HHHH-------HHHHHHhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc-
Confidence 4443 344433321 11122445443 23343 66777777888421
Q ss_pred cCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc
Q 003165 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
..+.++... .....+.+++.+++++|+|++++.|++++++||++ ++++.+++. +.++++++ ++|+|+
T Consensus 197 --~~g~~~~~~-----~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv 264 (704)
T 2rdo_7 197 --DQGVTFEYE-----DIPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIILV 264 (704)
T ss_pred --cCCcceEEe-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 012223321 23445778889999999999999999999999996 789998886 56777766 689997
Q ss_pred ----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|+|.+++.++. +. +.++. ....+.|++++|++|+|||++.+++.|+ ++|+||
T Consensus 265 ~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV 338 (704)
T 2rdo_7 265 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRV 338 (704)
T ss_pred EEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEE
Confidence 68999999999999998765543 11 11111 1245678899999999999999999888 999999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccc
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHP 477 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~ 477 (843)
|||+|++||.|++. +.+++ ++|++|+.++|++++++++|.|||||+|.|++++ ++| |||+.. .+.+
T Consensus 339 ~sG~l~~g~~v~~~----~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~--~~~~ 405 (704)
T 2rdo_7 339 YSGVVNSGDTVLNS----VKAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPD--APII 405 (704)
T ss_pred EeeeecCCCEEEeC----CCCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCC--cccc
Confidence 99999999999953 23333 7999999999999999999999999999999987 677 999876 6678
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEE
Q 003165 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEII 556 (843)
Q Consensus 478 ~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~ 556 (843)
++++.++ .|+++++|+|+++.|++||.+||++|.+|||+++++++ +|||++|+||||||||||++||+++| |+++.
T Consensus 406 l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v~ 482 (704)
T 2rdo_7 406 LERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEAN 482 (704)
T ss_pred cCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8899986 89999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EeccEEeEeecccccc-cceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEE
Q 003165 557 KSDPVVSFRETVLEKS-CRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 635 (843)
Q Consensus 557 ~~~p~V~yrETi~~~~-~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 635 (843)
+++|+|+|||||.+++ +.. ++|++ |+|+. +||+. +|
T Consensus 483 ~~~p~V~yrEti~~~~~~~~------~~~~k----------------q~gg~--------------~q~~~-------v~ 519 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVE------GKHAK----------------QSGGR--------------GQYGH-------VV 519 (704)
T ss_pred EeCCEEEEEEeeccccccce------eeecc----------------ccCCC--------------CeeEE-------EE
Confidence 9999999999998776 432 33333 34332 34442 44
Q ss_pred E-eccC---C-CCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHH
Q 003165 636 C-FGPE---T-TGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPT 709 (843)
Q Consensus 636 ~-~~P~---~-~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a 709 (843)
. ++|. + +.+|.|.|.+.|+.++++|+++|++||+||+++|||||+||+||+|+|+|+++|. ||++ .+|+.|
T Consensus 520 ~~~ePl~~~~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~---~~f~~a 596 (704)
T 2rdo_7 520 IDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSE---LAFKLA 596 (704)
T ss_pred EEEEECCCCCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcH---HHHHHH
Confidence 2 4543 2 2368999999999999999999999999999999999999999999999999997 5554 457899
Q ss_pred HHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhC
Q 003165 710 ARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAAT 789 (843)
Q Consensus 710 ~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T 789 (843)
+++||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+| ++.|+|++|++|||||+++|||+|
T Consensus 597 ~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T 674 (704)
T 2rdo_7 597 ASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLT 674 (704)
T ss_pred HHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhc
Confidence 999999999999999999999999999999999999999999999999998764 799999999999999999999999
Q ss_pred CCceEeeeEecceeecCCCCCCCchHHHHHHHH
Q 003165 790 SGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVAD 822 (843)
Q Consensus 790 ~G~~~~~~~f~~y~~v~~~~~~~~~~a~~~~~~ 822 (843)
+|+|+|+|+|+||+++|+++ +++++++
T Consensus 675 ~G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 675 KGRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred CCceEEEEEeCcceECCccH------HHHHHHH
Confidence 99999999999999999997 8899876
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-112 Score=1018.64 Aligned_cols=663 Identities=26% Similarity=0.372 Sum_probs=538.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc--CCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+++|||+|+||+|+|||||+++|++.++.+.+.. ....+++|+.+.|+++|+|+.+....+.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~------------- 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE------------- 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET-------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC-------------
Confidence 46799999999999999999999999888765410 011468999999999999999998888885
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHH
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~ 173 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. +.+..+
T Consensus 74 ---~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~~~~ 146 (693)
T 2xex_A 74 ---GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GANFEY 146 (693)
T ss_dssp ---TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHHH
T ss_pred ---CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccchHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 776444
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccC
Q 003165 174 AYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
+. ++++..+.. .+....+|++ .++.++.. ......+.| +
T Consensus 147 ~~-------~~l~~~l~~-----------~~~~~~ipisa~~~~~~l~d----------------~l~~~~~~~-----~ 187 (693)
T 2xex_A 147 SV-------STLHDRLQA-----------NAAPIQLPIGAEDEFEAIID----------------LVEMKCFKY-----T 187 (693)
T ss_dssp HH-------HHHHHHHCC-----------CEEESEEEECCGGGCCEEEE----------------TTTTEEEEC-----C
T ss_pred HH-------HHHHHHhCC-----------CceeEEeecccCCCcceeee----------------eecceeEEe-----c
Confidence 33 333333321 1112233443 33444422 111112223 2
Q ss_pred -cCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc-
Q 003165 252 -PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA- 328 (843)
Q Consensus 252 -~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 328 (843)
..+..+... +....|.+.....+.+|++.+++.|++++++||++ .+++.+++. +.+++++. .+++|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv~ 257 (693)
T 2xex_A 188 NDLGTEIEEI-----EIPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYPVL 257 (693)
T ss_dssp SSSSCSCEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEEEE
T ss_pred cCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeeEE
Confidence 111112211 23445666777788899999999999999999996 788888876 56666665 578996
Q ss_pred ---------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeE
Q 003165 329 ---------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
Q Consensus 329 ---------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~ 399 (843)
++.|||+|++++|+|.+++.++. +. +.++. ...++.|++++||+|+|||++.+++.|+ ++|+|||
T Consensus 258 ~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV~ 331 (693)
T 2xex_A 258 CGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIG---HR-ASNPE-EEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRVY 331 (693)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEE---EE-TTEEE-EEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEEE
T ss_pred EeecccCcCHHHHHHHHHHHCCCchhcccccc---cC-CCccc-cceeecCCCCCceEEEEEEeeecCCCce-EEEEEEE
Confidence 68999999999999988765443 11 11111 2356789999999999999999999887 9999999
Q ss_pred eeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCcccc
Q 003165 400 SGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPI 478 (843)
Q Consensus 400 SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~ 478 (843)
||+|++||.|++. +.++ .++|++|+.++|++++++++|.|||||+|.||+++ ++| |||+.. .+.++
T Consensus 332 sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~--~~~~~ 398 (693)
T 2xex_A 332 SGTMTSGSYVKNS----TKGK-----RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEK--NDIIL 398 (693)
T ss_dssp ESEEETTEEEEET----TTTE-----EEEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETT--CCEEC
T ss_pred eeeEecCCEEEec----CCCc-----eEEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCC--Ccccc
Confidence 9999999999953 3333 38999999999999999999999999999999997 667 999877 66788
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEE
Q 003165 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIK 557 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 557 (843)
+++.++ .|+++++|+|++++|++||.+||++|.+|||+|+++++ ||||++|+||||||||||++||+++| |+++.+
T Consensus 399 ~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v~~ 475 (693)
T 2xex_A 399 ESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNV 475 (693)
T ss_dssp CCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCEEE
T ss_pred CCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEEE
Confidence 999987 89999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred eccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEE-
Q 003165 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWC- 636 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~- 636 (843)
++|+|+|||||.++++ ..++|++ |+|+. +||+. +|.
T Consensus 476 ~~p~V~yrEti~~~~~------~~~~~~k----------------q~gg~--------------~~~~~-------v~~~ 512 (693)
T 2xex_A 476 GAPMVSYRETFKSSAQ------VQGKFSR----------------QSGGR--------------GQYGD-------VHIE 512 (693)
T ss_dssp CCCEECCEEEESSCEE------EEEEEEE----------------CTTSS--------------CEEEE-------EEEE
T ss_pred eCCeEEEEEEeccccc------eeEeecc----------------ccCCC--------------CceEE-------EEEE
Confidence 9999999999998764 3445555 55553 45553 554
Q ss_pred eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHH
Q 003165 637 FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 637 ~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~ 714 (843)
++|...| +|.|.|.+.|+.++++|+++|++||+||+++|||||+|++||+|+|.|+++|. ||++. +|+.|+++||
T Consensus 513 ~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a~ 589 (693)
T 2xex_A 513 FTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAASLAL 589 (693)
T ss_dssp EEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHHHHH
T ss_pred EEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHHHHH
Confidence 6775433 68999999999999999999999999999999999999999999999999997 66654 5779999999
Q ss_pred HHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceE
Q 003165 715 YASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (843)
Q Consensus 715 ~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (843)
++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+| +++|+|++|++|||||+++|||+|+|+|+
T Consensus 590 ~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 667 (693)
T 2xex_A 590 KEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRGT 667 (693)
T ss_dssp HHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCCE
T ss_pred HHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCceE
Confidence 9999999999999999999999999999999999999999999998774 79999999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchHHHHHHHHH
Q 003165 795 PQCVFDHWDMMSSDPLEPGTQAAQLVADI 823 (843)
Q Consensus 795 ~~~~f~~y~~v~~~~~~~~~~a~~~~~~~ 823 (843)
|+|+|+||+++|+++ +++++++.
T Consensus 668 ~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 668 YTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp EEEEEEEEEECCHHH------HHHHHHHH
T ss_pred EEEEeCcceECChhH------HHHHHHHh
Confidence 999999999999986 99998874
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.6e-112 Score=1019.78 Aligned_cols=660 Identities=27% Similarity=0.395 Sum_probs=495.5
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc--CCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE 92 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
..+++|||+|+||+|||||||+++|++.++.+.+.. ....+++|+.+.|+++|+|+......+.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~------------ 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------------ 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET------------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC------------
Confidence 456799999999999999999999999888765420 112468999999999999999998888885
Q ss_pred CCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHH
Q 003165 93 RNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~ 172 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.||..+|+++...++|+++|+||+|+. +.++.
T Consensus 76 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~~~ 147 (691)
T 1dar_A 76 ----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GADLW 147 (691)
T ss_dssp ----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHH
T ss_pred ----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999998 77643
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeec--ccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCccc
Q 003165 173 EAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
+ ++++++..+.. .+...++|+ ++++.||...+.++ .+.|
T Consensus 148 ~-------~~~~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~~d~~~~~----------------~~~~----- 188 (691)
T 1dar_A 148 L-------VIRTMQERLGA-----------RPVVMQLPIGREDTFSGIIDVLRMK----------------AYTY----- 188 (691)
T ss_dssp H-------HHHHHHHTTCC-----------CEEECEEEESCGGGCCEEEETTTTE----------------EEEE-----
T ss_pred H-------HHHHHHHHhCC-----------CccceeccccCCCcccchhhhhcce----------------eeEe-----
Confidence 3 34444444321 111223333 45677886544322 2222
Q ss_pred C-cCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc
Q 003165 251 D-PATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
+ ..+..+... .....|.+.+.+++.+|++.+++.|++++++||++ .+++.+++. ..+++++. .+++|+
T Consensus 189 ~~~~g~~~~~~-----~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~Pv 258 (691)
T 1dar_A 189 GNDLGTDIREI-----PIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITPV 258 (691)
T ss_dssp CSTTSCCEEEE-----CCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred ccCCCceeEEe-----cCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeEE
Confidence 2 111112221 23455777788889999999999999999999996 788888886 45666665 578897
Q ss_pred ----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|+|.+++.++... + ++ ....+.|++++|++|+|||+..+++.|+ ++|+||
T Consensus 259 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~--~~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV 330 (691)
T 1dar_A 259 FLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EG--EVVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRV 330 (691)
T ss_dssp EECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SS--CEEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Cc--cccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEE
Confidence 6899999999999999876554321 1 11 1346788999999999999999999887 999999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCc-c
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDA-H 476 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~-~ 476 (843)
|||+|++||.|++. +.++ .++|++|+.++|++++++++|.|||||+|.||+++ .+| |||+.. .+ .
T Consensus 331 ~sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~--~~~~ 397 (691)
T 1dar_A 331 YSGTLTSGSYVYNT----TKGR-----KERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGED--APRV 397 (691)
T ss_dssp EESEEESSCEEEET----TTTE-----EEECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETT--CCCC
T ss_pred eeeeEecCCEEEec----CCCc-----EEEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCC--Cccc
Confidence 99999999999953 3333 37999999999999999999999999999999997 667 999877 55 7
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEE
Q 003165 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
Q Consensus 477 ~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v 555 (843)
+++++.++ .|+++++|+|+++.|++||.+||++|.+|||+++++++ +|||++|+||||||||||++||+++| |+++
T Consensus 398 ~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~v 474 (691)
T 1dar_A 398 ILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVDA 474 (691)
T ss_dssp BCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEBT
T ss_pred ccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--CceE
Confidence 88899887 89999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEeccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEE
Q 003165 556 IKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW 635 (843)
Q Consensus 556 ~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 635 (843)
.+++|+|+|||||.++++ ..++|++ |+|+. +||+. +|
T Consensus 475 ~~~~p~V~yrEti~~~~~------~~~~~~k----------------q~gg~--------------~~~~~-------v~ 511 (691)
T 1dar_A 475 NVGKPQVAYRETITKPVD------VEGKFIR----------------QTGGR--------------GQYGH-------VK 511 (691)
T ss_dssp TTBCCCBCCEEECSSCEE------EEEEEEE----------------CCSSS--------------CEEEE-------EE
T ss_pred EEeCCeEEEEEeecccee------eeeeecc----------------ccCCC--------------CceEE-------EE
Confidence 999999999999998764 3445555 55553 45553 55
Q ss_pred E-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHH
Q 003165 636 C-FGPETTG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (843)
Q Consensus 636 ~-~~P~~~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 712 (843)
. ++|...| ++.|.|.+.|+.++++|+++|++||+||+++|||||+|++||+|+|.|+++|. ||++. +|+.|+++
T Consensus 512 ~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~ 588 (691)
T 1dar_A 512 IKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIAGSM 588 (691)
T ss_dssp EEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHHHHH
T ss_pred EEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHHHHH
Confidence 4 6664433 68899999999999999999999999999999999999999999999999997 66654 47799999
Q ss_pred HHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCc
Q 003165 713 VIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792 (843)
Q Consensus 713 a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (843)
||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+| ++.|+|++|++|||||+++|||+|+|+
T Consensus 589 a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~ 666 (691)
T 1dar_A 589 AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGR 666 (691)
T ss_dssp HHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999998774 799999999999999999999999999
Q ss_pred eEeeeEecceeecCCCCCCCchHHHHHHH
Q 003165 793 AFPQCVFDHWDMMSSDPLEPGTQAAQLVA 821 (843)
Q Consensus 793 ~~~~~~f~~y~~v~~~~~~~~~~a~~~~~ 821 (843)
|+|+|+|+||+++|+++ ++++++
T Consensus 667 ~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 667 GSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHC
T ss_pred eEEEEEeCcceECChhH------HHHHHh
Confidence 99999999999999986 888764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=5.2e-115 Score=1033.48 Aligned_cols=602 Identities=21% Similarity=0.271 Sum_probs=504.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc--CCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+||||||+||+|||||||+++||+.+|.+.+.. ....+++|++++|++|||||+++.+++.|+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS---------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC---------------
Confidence 589999999999999999999999999998731 112468999999999999999999999986
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHH
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 175 (843)
+++|||||||||+||..|+.++|+++|+||+||||++|+++||+.+|++|.+.++|+++||||||++ ++++....
T Consensus 66 -~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~~~~~ 140 (638)
T 3j25_A 66 -NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDLSTVY 140 (638)
T ss_dssp -SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCSHHHH
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88855544
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003165 176 QTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+.+++ .+.. ++.+.... .+|.+....
T Consensus 141 ~~i~~-------~l~~----------------~~~~~~~~---------------------------~~~~~~~~~---- 166 (638)
T 3j25_A 141 QDIKE-------KLSA----------------EIVIKQKV---------------------------ELYPNVCVT---- 166 (638)
T ss_dssp HHHHH-------TTCC----------------CCCCCCCC---------------------------CSCGGGCCC----
T ss_pred HHHHH-------HhCC----------------Ccccccee---------------------------Eeecccccc----
Confidence 33332 2211 01110000 011100000
Q ss_pred ceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc------
Q 003165 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA------ 328 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 328 (843)
.+. . ..+.+.+++.|++++++|+++ ..++..++. ..+.+.+. .+++|+
T Consensus 167 ~~~----------~----------~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~---~~~~~~~~~~~~~Pv~~gSa~ 221 (638)
T 3j25_A 167 NFT----------E----------SEQWDTVIEGNDDLLEKYMSG--KSLEALELE---QEESIRFQNCSLFPLYHGSAK 221 (638)
T ss_dssp CCC----------C----------HHHHHHHHHHHCHHHHHHHHH--CCCCSHHHH---HHHHHHHHHTSCCCCCCCCST
T ss_pred ccc----------h----------hhhhhhhhcccHHHHhhhccC--CccchHHHH---HHHhhhhcccccccccccccc
Confidence 000 0 134667777889999999998 566666664 33444433 578886
Q ss_pred ----hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEe
Q 003165 329 ----SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVS 404 (843)
Q Consensus 329 ----~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~ 404 (843)
+++|||+|++++|+|.+ ++++|++|+|||+..+++.|+ ++|+|||||+|+
T Consensus 222 ~~~Gv~~LLd~i~~~~p~p~~-------------------------~~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG~l~ 275 (638)
T 3j25_A 222 SNIGIDNLIEVITNKFYSSTH-------------------------RGPSELCGNVFKIEYTKKRQR-LAYIRLYSGVLH 275 (638)
T ss_dssp TCCSHHHHHHHHHHSCCCSGG-------------------------GSCCCCCBEEBCCCCCSTTCC-CCBCCBSSBCCC
T ss_pred cCCCchhHhhhhhccccCccc-------------------------chhhhhcceeeeeeeeccCce-EEEEEEEcCccc
Confidence 79999999999999953 235789999999999999887 999999999999
Q ss_pred cCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCccccccccc
Q 003165 405 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDAHPIRAMKF 483 (843)
Q Consensus 405 ~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~ 483 (843)
+||.|++.+ . ++ +++.+++.++|++++++++|.|||||++.| ... ++| |+++.. ....+.++.+
T Consensus 276 ~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~--~~~~tl~d~~--~~~~~~~i~~ 340 (638)
T 3j25_A 276 LRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQN-EFL--KLNSVLGDTK--LLPQRKKIEN 340 (638)
T ss_dssp SCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSC--SSEECSSSSS--SGGGCSCCCC
T ss_pred CCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEec-ccc--ccCceecCCC--CcccccCccC
Confidence 999998532 1 22 699999999999999999999999999988 333 556 777765 4556667776
Q ss_pred CCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEE
Q 003165 484 SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVV 562 (843)
Q Consensus 484 ~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V 562 (843)
+ +|+++++|+|.+++|++||.++|++|++|||+++++.+ ++||++|+|||||||||+++||+++| |+++.+++|+|
T Consensus 341 p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~P~V 417 (638)
T 3j25_A 341 P-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKEPTV 417 (638)
T ss_dssp C-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEECCCC
T ss_pred C-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeCCce
Confidence 5 99999999999999999999999999999999999987 89999999999999999999999999 99999999999
Q ss_pred eEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEE-EeccCC
Q 003165 563 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIW-CFGPET 641 (843)
Q Consensus 563 ~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~-~~~P~~ 641 (843)
+|||||.++++. +|++ ++|+. ++|+. ++ .++|..
T Consensus 418 ~yrEti~~~~~~--------~~~~----------------~~~~~--------------~~~~~-------v~~~~eP~~ 452 (638)
T 3j25_A 418 IYMERPLKNAEY--------TIHI----------------EVPPN--------------PFWAS-------IGLSVSPLP 452 (638)
T ss_dssp CCCBCCCSCCEE--------CCCC----------------CSSSC--------------CCCCC-------CCEECCCCC
T ss_pred eEEEEecccceE--------EEEE----------------ecCCC--------------CceEE-------EEEEEeccc
Confidence 999999987643 2222 33332 23332 44 367754
Q ss_pred CC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHHHHHHHHH
Q 003165 642 TG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQL 719 (843)
Q Consensus 642 ~g-~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~a~~~al~ 719 (843)
.| ++.|.+.+.|+.++++|+++|++||++|+++| |||+|++|++|+|.|+++|. ||+ ..+|+.|+++||++|++
T Consensus 453 ~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~---~~~f~~a~~~a~~~a~~ 528 (638)
T 3j25_A 453 LGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVST---PADFRMLAPIVLEQVLK 528 (638)
T ss_dssp SSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCC---SHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCC---HHHHHHHHHHHHHHHHH
Confidence 44 57788889999999999999999999999999 99999999999999999996 443 45688999999999999
Q ss_pred hcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEe
Q 003165 720 TAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVF 799 (843)
Q Consensus 720 ~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 799 (843)
+|+|+||||||+|+|+||++++|+||++|++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+|
T Consensus 529 ~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f 606 (638)
T 3j25_A 529 KAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTEL 606 (638)
T ss_dssp HHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCC
T ss_pred HCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999998766 47899999999999999999999999999999999
Q ss_pred cceeecCCCCCCCc
Q 003165 800 DHWDMMSSDPLEPG 813 (843)
Q Consensus 800 ~~y~~v~~~~~~~~ 813 (843)
+||++||+||++.+
T Consensus 607 ~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 607 KGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCSCCSCCC
T ss_pred CceEECCCCccccc
Confidence 99999999999754
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=7.8e-105 Score=950.36 Aligned_cols=634 Identities=23% Similarity=0.317 Sum_probs=541.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc----eEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.++.+||+|+||+|||||||+++|++..+.+.. .|+ ..++|+.+.|+++|+|+......+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC-----------
Confidence 357899999999999999999999988776543 222 367899999999999999988888775
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCH
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~ 171 (843)
++.+||||||||.+|..++.++++.+|++++|+|+++|+..||+.+|+++...++|+++|+||+|+. .+.
T Consensus 73 -----~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-----~~~ 142 (665)
T 2dy1_A 73 -----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-----GDY 142 (665)
T ss_dssp -----TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-----CCH
T ss_pred -----CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-----hhH
Confidence 7899999999999999999999999999999999999999999999999999999999999999975 222
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcc
Q 003165 172 EEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
++..+ +++..+.. +....+|++ +++.||.. ... ...| |
T Consensus 143 ~~~~~-------~l~~~l~~------------~~~~~~Pi~~~~~~~g~~d----------------~~~--~~~~---~ 182 (665)
T 2dy1_A 143 YALLE-------DLRSTLGP------------ILPIDLPLYEGGKWVGLID----------------VFH--GKAY---R 182 (665)
T ss_dssp HHHHH-------HHHHHHCS------------EEECEEEEEETTEEEEEEE----------------TTT--TEEE---E
T ss_pred HHHHH-------HHHHHhCC------------cceEEeeecCCCcccchhh----------------hhh--hhee---e
Confidence 33332 23222210 011133333 33455522 222 2334 3
Q ss_pred cCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhhccc
Q 003165 250 FDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
|++. .+... .....|.+++.+++++|++.+++.|++++++|+++ .+++.+++. ..++++++ ++|+|+
T Consensus 183 ~~~g--~~~~~-----~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~~~~~~~pv 250 (665)
T 2dy1_A 183 YENG--EEREA-----EVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAVRRGLLYPV 250 (665)
T ss_dssp EETT--EEEEE-----CCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred cCCC--ceeEe-----cCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 3321 23322 23456778888999999999999999999999996 788998886 46677766 578886
Q ss_pred ----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeee
Q 003165 329 ----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|+|.+. ++++|++++|||+..+++.|+ ++|+||
T Consensus 251 ~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G~-~~~~rV 305 (665)
T 2dy1_A 251 ALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMGQ-VAYLRL 305 (665)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCCe-EEEEEE
Confidence 689999999999999642 145799999999999999887 999999
Q ss_pred EeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCCCCCc--
Q 003165 399 FSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEKEVDA-- 475 (843)
Q Consensus 399 ~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~~~~~-- 475 (843)
|||+|++||.|++.+ . .++|++|+.++|++.+++++|.|||||++.|++++ .+| ||++.. .+
T Consensus 306 ~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~~~--~~~~ 370 (665)
T 2dy1_A 306 YRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQGE--KPES 370 (665)
T ss_dssp EESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEESSS--CCCG
T ss_pred cccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEecCC--Cccc
Confidence 999999999999532 2 27999999999999999999999999999999987 577 999876 44
Q ss_pred ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhcCCCcE
Q 003165 476 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDFMGGAE 554 (843)
Q Consensus 476 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~ 554 (843)
.++++++++ .|+++++|+|.+++|.+||.++|++|.+|||++++..+ +|||++|+|||||||||+++||+ +| +++
T Consensus 371 ~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~--~v~ 446 (665)
T 2dy1_A 371 EEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY--GVE 446 (665)
T ss_dssp GGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT--TCC
T ss_pred cccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC--Cce
Confidence 678888887 89999999999999999999999999999999999997 89999999999999999999999 99 999
Q ss_pred EEEeccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceE
Q 003165 555 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKI 634 (843)
Q Consensus 555 v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 634 (843)
+.+++|+|+|||||.+++ +..++|++ ++|+. +||+. +
T Consensus 447 v~~~~p~V~yrEti~~~~------~~~~~~~k----------------~~gg~--------------g~~~~-------v 483 (665)
T 2dy1_A 447 VEFSVPKVPYRETIKKVA------EGQGKYKK----------------QTGGH--------------GQYGD-------V 483 (665)
T ss_dssp EEEECCCCCCEEEESSCE------EEEEEEEE----------------EETTE--------------EEEEE-------E
T ss_pred EEEeCCEEEEEEeeccce------eeeeeccc----------------ccCCC--------------cceEE-------E
Confidence 999999999999999876 34556766 66664 66663 6
Q ss_pred EE-eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecc-cccccCCCchHHHHHH
Q 003165 635 WC-FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (843)
Q Consensus 635 ~~-~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~~~~a~~~ 712 (843)
|. ++|.. ++.|.+++.|+.++++++++|++||+||+++|||||+|++||+|+|+|+++|. ||++. +|+.|+++
T Consensus 484 ~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~ 558 (665)
T 2dy1_A 484 WLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDL---AFQIAASL 558 (665)
T ss_dssp EEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHH---HHHHHHHH
T ss_pred EEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHH---HHHHHHHH
Confidence 75 88865 58999999999999999999999999999999999999999999999999997 76654 46789999
Q ss_pred HHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCc
Q 003165 713 VIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQ 792 (843)
Q Consensus 713 a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (843)
||++|+++|+|+||||||+|+|+||++++|+||++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+
T Consensus 559 a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~ 636 (665)
T 2dy1_A 559 AFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGA 636 (665)
T ss_dssp HHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999876 4899999999999999999999999999
Q ss_pred eEeeeEecceeecCCCCCCCchHHHHHHHHHH
Q 003165 793 AFPQCVFDHWDMMSSDPLEPGTQAAQLVADIR 824 (843)
Q Consensus 793 ~~~~~~f~~y~~v~~~~~~~~~~a~~~~~~~r 824 (843)
|+|+|+|+||+++|+++ +++++++.+
T Consensus 637 ~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 637 GAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred EEEEEEeCceeECCccH------HHHHHHHHh
Confidence 99999999999999986 999998864
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.2e-78 Score=707.24 Aligned_cols=449 Identities=21% Similarity=0.293 Sum_probs=320.9
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc------cCCceEeecCcccccccCeeEeeeeEEEEEeecccccc
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
....++|||||+||+|||||||+++||+.+|.+.+. ..+..+++|++++|++|||||.++.+++.|+
T Consensus 26 ~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~------- 98 (548)
T 3vqt_A 26 REAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR------- 98 (548)
T ss_dssp HHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-------
T ss_pred hcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-------
Confidence 345689999999999999999999999999998762 1122468999999999999999999999996
Q ss_pred cccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccc
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~ 167 (843)
+++|||||||||+||..|+.++|+++|+||+||||++|+++||+.+|++|.+.++|+++||||||+.
T Consensus 99 ---------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~---- 165 (548)
T 3vqt_A 99 ---------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE---- 165 (548)
T ss_dssp ---------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----
T ss_pred ---------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecc--cCccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
++++.++.+.+++.+. . .+...++|++ +.+.|+.+.+... .++|
T Consensus 166 ~ad~~~~~~~i~~~l~---~---------------~~~p~~~Pig~~~~f~g~vdl~~~~----------------~~~~ 211 (548)
T 3vqt_A 166 ALHPLDVMADIEQHLQ---I---------------ECAPMTWPIGMGSSFKGTYDLLHKQ----------------LHLF 211 (548)
T ss_dssp CCCHHHHHHHHHHHHT---S---------------EEEESEEEESCGGGCCEEEETTTTE----------------EEEC
T ss_pred hcchhHhhhhhhhhcC---C---------------ceEeEEeeeecCCcccceEeeeeee----------------eeec
Confidence 9996665554444332 1 2233345554 4466765544332 2333
Q ss_pred cCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhh
Q 003165 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTW 325 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (843)
...... ........ ... ....+.+ ..+...+...+.++.+ ...+.+...+ ..+ ..++
T Consensus 212 ~~~~~~-~~~~~~~~-~~~--~~~~~~~--------~~~~~~~~~~~~~~l~-~~~~~~~~~e-------~~~---~g~~ 268 (548)
T 3vqt_A 212 SATHGG-RIQSGIVI-HGA--DDPQLDE--------YLGDQAEQLRMDLALL-EEAGTPFDEE-------RYL---KGEL 268 (548)
T ss_dssp C--------CCCEEC-CST--TCTHHHH--------HHGGGHHHHHHHHHHH-HHHCCCCCHH-------HHH---TTSE
T ss_pred ccccCC-cccccccc-ccc--chHHHHH--------HHHHHHHHhhhHHHHH-hhccCchhHH-------HHH---hCCc
Confidence 211000 00000000 000 0000000 0000000001111111 1111222211 111 1467
Q ss_pred ccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeec---CCCCcc
Q 003165 326 LPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPA---SDKGRF 392 (843)
Q Consensus 326 ~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~---~~~g~~ 392 (843)
+|+ +++|||+|++|+|+|.+..... . ...+.+.|++|+|||+..+ ++.|+
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------------~-~~~~~~~p~~a~vfKi~~~~~~~~~Gr- 331 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------------R-VVEPGEEAFTGVVFKIQANMDKAHRDR- 331 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------------S-EECTTCSSCEEEEEEEECC-------C-
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------------c-ccCCCCcCceEEEEEEEccCCcCCCCe-
Confidence 886 7999999999999997543210 0 0123467999999999876 67777
Q ss_pred eeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecCC
Q 003165 393 FAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 393 l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~~ 471 (843)
++|+|||||+|++|+.|++. +++++ +|+++++.++|.+++++++|.|||||+|.|++++ .+| |||+.+
T Consensus 332 la~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~ 400 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKHH----RTGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESK 400 (548)
T ss_dssp EEEEEEEESCEETTCEEEET----TTTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSS
T ss_pred EEEEEEecceecCCCEEEee----ccccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCC
Confidence 99999999999999999964 33433 8999999999999999999999999999999998 677 999887
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEecchhHHHHHHHHHHhhcCC
Q 003165 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMG 551 (843)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~ 551 (843)
.+.++++++++ .|+++++|+|+++.|.+||.++|++|.++||+..+..++|||++|+|||||||||+++||+++|
T Consensus 401 --~~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey-- 475 (548)
T 3vqt_A 401 --EVLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY-- 475 (548)
T ss_dssp --SCCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--
T ss_pred --CccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--
Confidence 67788888886 9999999999999999999999999999999665544499999999999999999999999999
Q ss_pred CcEEE-----EeccEEeEeecccccc
Q 003165 552 GAEII-----KSDPVVSFRETVLEKS 572 (843)
Q Consensus 552 ~v~v~-----~~~p~V~yrETi~~~~ 572 (843)
||++. ++.|+|+|||||+..+
T Consensus 476 ~vev~~e~v~~~~P~V~YrEti~~~~ 501 (548)
T 3vqt_A 476 GVDAVYEGVSTHTARWVYCEDKKIFA 501 (548)
T ss_dssp CCCEEEEECSCCEEEEEECSCHHHHH
T ss_pred CCCEEEeeccccCceEEecCCccchh
Confidence 99976 5789999999998876
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=3.4e-74 Score=670.79 Aligned_cols=488 Identities=26% Similarity=0.431 Sum_probs=377.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~dg 70 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------KDG 70 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------TTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------CCC
Confidence 3579999999999999999999999999988764333 4689999999999999999999988862 133
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHH
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~ 175 (843)
+.+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+++|+||+|+. ++++++..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~v~ 146 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDRVK 146 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHH
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 77754433
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003165 176 QTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+.+ ...+.. .+ .++..+|+..|.
T Consensus 147 ~el-------~~~lg~-----------~~--~~vi~vSAktg~------------------------------------- 169 (600)
T 2ywe_A 147 KQI-------EEVLGL-----------DP--EEAILASAKEGI------------------------------------- 169 (600)
T ss_dssp HHH-------HHTSCC-----------CG--GGCEECBTTTTB-------------------------------------
T ss_pred HHH-------HHhhCC-----------Cc--ccEEEEEeecCC-------------------------------------
Confidence 222 211110 00 011222221110
Q ss_pred ceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHH
Q 003165 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEM 335 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 335 (843)
| ++.||++
T Consensus 170 ----------------------------------------------G--------------------------I~~Lle~ 177 (600)
T 2ywe_A 170 ----------------------------------------------G--------------------------IEEILEA 177 (600)
T ss_dssp ----------------------------------------------S--------------------------HHHHHHH
T ss_pred ----------------------------------------------C--------------------------chHHHHH
Confidence 0 1457888
Q ss_pred HHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCC
Q 003165 336 MIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 415 (843)
Q Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n 415 (843)
+++++|+|. .++++|+.++|||+..+++.|. ++++||++|+|++||.|+++.
T Consensus 178 I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~-- 229 (600)
T 2ywe_A 178 IVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMS-- 229 (600)
T ss_dssp HHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETT--
T ss_pred HHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEecc--
Confidence 889999983 2357899999999999998887 999999999999999999753
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe-c---cccccccce-eeecCCCCCc--ccccccccCCCce
Q 003165 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQFITKNA-TLTNEKEVDA--HPIRAMKFSVSPV 488 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-g---l~~~~~~tg-Tl~~~~~~~~--~~~~~~~~~~~Pv 488 (843)
.+. .++|.+++.+.+ +..+++++.||||+++. | ++++ ++| ||++.. .+ .+++++.++ .|+
T Consensus 230 --~~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~--~~~~~~l~~~~~~-~P~ 296 (600)
T 2ywe_A 230 --TGK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAK--NPTKEPVPGFQPA-KPM 296 (600)
T ss_dssp --TTE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESS--SCCSSCCSCCCCC-CCC
T ss_pred --ccc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCC--CccccccCCCCCC-CcE
Confidence 222 279999998876 58899999999999885 5 4455 667 999876 33 467888875 999
Q ss_pred EEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEe-----cchhHHHHHHHHHHhhcCCCcEEEEeccEEe
Q 003165 489 VRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVS 563 (843)
Q Consensus 489 ~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~ 563 (843)
++++|+|.+..|.++|.++|++|.+|||+|+++ .||+|.++.| ||||||||+++||+++| |+++.+++|+|+
T Consensus 297 v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V~ 373 (600)
T 2ywe_A 297 VYAGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNVI 373 (600)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEEC
T ss_pred EEEEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeEE
Confidence 999999999999999999999999999999997 4788877777 99999999999999999 999999999999
Q ss_pred EeecccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCC
Q 003165 564 FRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTG 643 (843)
Q Consensus 564 yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g 643 (843)
|||||.+.. +. +++ + .
T Consensus 374 yreti~~~g----------~~----~~~-----------~----------------------------------~----- 389 (600)
T 2ywe_A 374 YRVKKKFTD----------EV----IEV-----------R----------------------------------N----- 389 (600)
T ss_dssp EEEEETTCS----------SC----EEE-----------S----------------------------------S-----
T ss_pred EEEEecCCC----------cE----EEE-----------e----------------------------------C-----
Confidence 999987321 00 000 0 0
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCC
Q 003165 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 723 (843)
Q Consensus 644 ~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~ 723 (843)
| +++|+.| + +. +
T Consensus 390 --------------------------------p-~~~p~~~----------~----~~---------------------~ 401 (600)
T 2ywe_A 390 --------------------------------P-MDFPDNA----------G----LI---------------------E 401 (600)
T ss_dssp --------------------------------G-GGSCSCG----------G----GE---------------------E
T ss_pred --------------------------------h-hhCCCCC----------c----cc---------------------c
Confidence 1 3566655 0 00 3
Q ss_pred eeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecce
Q 003165 724 RLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHW 802 (843)
Q Consensus 724 ~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y 802 (843)
.||||||+++|.+|++|+|+||++|++|||++.+++..++ ++..|+|.+|++|| +||.++|||+|+|+|+|+++|+||
T Consensus 402 ~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y 480 (600)
T 2ywe_A 402 YVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGY 480 (600)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred cccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccc
Confidence 7999999999999999999999999999999999998543 58899999999999 899999999999999999999999
Q ss_pred eec---------CCCCCCC----------chHHHHHHHHHHH
Q 003165 803 DMM---------SSDPLEP----------GTQAAQLVADIRK 825 (843)
Q Consensus 803 ~~v---------~~~~~~~----------~~~a~~~~~~~r~ 825 (843)
+++ .++|.|. ....++++++.+.
T Consensus 481 ~~~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 481 RPSDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp EECCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred eEccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999 7887763 2467777777654
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=2.5e-72 Score=656.74 Aligned_cols=486 Identities=27% Similarity=0.418 Sum_probs=369.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .+++
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~g~ 69 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SDGE 69 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CCCC
Confidence 479999999999999999999999999988764333 4789999999999999999999998862 1334
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCCHHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~~~~~~~ 176 (843)
.+.+||||||||.||..++.++++.+|+||+|+|+++|++.||..+|..+...++|+++|+||+|+. ++++++..+
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v~~ 145 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERVAE 145 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 777554433
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCc
Q 003165 177 TFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+ .+.. .+ .++..+|+..|
T Consensus 146 ei~~-------~lg~-----------~~--~~vi~vSAktg--------------------------------------- 166 (599)
T 3cb4_D 146 EIED-------IVGI-----------DA--TDAVRCSAKTG--------------------------------------- 166 (599)
T ss_dssp HHHH-------HTCC-----------CC--TTCEEECTTTC---------------------------------------
T ss_pred HHHH-------HhCC-----------Cc--ceEEEeecccC---------------------------------------
Confidence 3222 1110 00 01112222110
Q ss_pred eeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHHH
Q 003165 257 WTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
.| ++.||+++
T Consensus 167 --------------------------------------------~G--------------------------I~~Ll~~I 176 (599)
T 3cb4_D 167 --------------------------------------------VG--------------------------VQDVLERL 176 (599)
T ss_dssp --------------------------------------------TT--------------------------HHHHHHHH
T ss_pred --------------------------------------------CC--------------------------chhHHHHH
Confidence 00 14578888
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
++++|+|. .++++|+.++||+++.+++.|. ++++||++|+|++||.++++.
T Consensus 177 ~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~--- 227 (599)
T 3cb4_D 177 VRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMS--- 227 (599)
T ss_dssp HHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETT---
T ss_pred hhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEecc---
Confidence 89999983 1357899999999999999887 999999999999999999753
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceEEE
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-g---l~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (843)
++. .++|.+++.+.+. .++++++.||||+++. | ++++ ++| ||++.......+++++.++ .|++++
T Consensus 228 -~~~-----~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~~ 297 (599)
T 3cb4_D 228 -TGQ-----TYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQVYA 297 (599)
T ss_dssp -TCC-----EEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCEEE
T ss_pred -ccc-----eeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-CcceEE
Confidence 222 2799999988765 8899999999999884 5 4455 666 9998762112567778775 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCccceEEEe-----cchhHHHHHHHHHHhhcCCCcEEEEeccEEeEee
Q 003165 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566 (843)
Q Consensus 492 aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrE 566 (843)
+++|.+..|.++|.++|++|.++||+|++. .+++|.++.| ||||||||+++||+++| |+++.+++|+|+|||
T Consensus 298 ~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 298 GLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECEEE
T ss_pred EEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEEEE
Confidence 999999999999999999999999999997 6788877777 99999999999999999 999999999999999
Q ss_pred cccccccceeeeecCCCceEEEEEEeeCchhhHhHHhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCce
Q 003165 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNM 646 (843)
Q Consensus 567 Ti~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~ 646 (843)
||.+.+. +.+ + .|.
T Consensus 375 ti~~g~~---------------~~~-----------~----------------------------------~p~------ 388 (599)
T 3cb4_D 375 ETTSREV---------------IYV-----------D----------------------------------SPS------ 388 (599)
T ss_dssp EESSSCE---------------EEE-----------S----------------------------------SGG------
T ss_pred EecCCce---------------EEe-----------c----------------------------------Chh------
Confidence 9875320 000 0 010
Q ss_pred EEecccCccchHHHHHHHHHHHHHHHHcCCCCCCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeee
Q 003165 647 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 726 (843)
Q Consensus 647 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~Ll 726 (843)
++|..+ .-+.||
T Consensus 389 --------------------------------~~p~~~------------------------------------~~~~ll 400 (599)
T 3cb4_D 389 --------------------------------KLPAVN------------------------------------NIYELR 400 (599)
T ss_dssp --------------------------------GSCCGG------------------------------------GEEEEE
T ss_pred --------------------------------hCCCcc------------------------------------ccchhh
Confidence 112110 002799
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhh-cCchHHHhhhCCCceEeeeEecceeec
Q 003165 727 EPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES-FGFSGTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||+++|.+|++|+|+||++|++|||++++++..++ +..|+|.+|++|| +||.++|||+|+|+|+|+++|+||+++
T Consensus 401 EP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~--~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN--QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTT--EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCC--eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 9999999999999999999999999999999998663 8899999999999 899999999999999999999999999
Q ss_pred ---------CCCCCCC----------chHHHHHHHHHHH
Q 003165 806 ---------SSDPLEP----------GTQAAQLVADIRK 825 (843)
Q Consensus 806 ---------~~~~~~~----------~~~a~~~~~~~r~ 825 (843)
.++|.|. ....++++++.+.
T Consensus 479 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 479 DMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred cccccccccCCcEecccceeccHHHHHHHHHHHHHHHHh
Confidence 6666552 2467777777654
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=5.6e-63 Score=573.21 Aligned_cols=442 Identities=20% Similarity=0.275 Sum_probs=309.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc------cCCceEeecCcccccccCeeEeeeeEEEEEeecccccccc
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY 89 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (843)
..++|||+|+||+|||||||+++|++..+.+... ......++|+.+.|++||+|+.+....+.|.
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------- 80 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------- 80 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET---------
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC---------
Confidence 3578999999999999999999999987776431 0111457899999999999999998888885
Q ss_pred cCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccC
Q 003165 90 KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~ 169 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.||+.+|+.+...++|+++|+||+|+. +.
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~----~~ 149 (529)
T 2h5e_A 81 -------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD----IR 149 (529)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----CS
T ss_pred -------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----cc
Confidence 8999999999999999999999999999999999999999999999999988999999999999998 77
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCcc--ceeeehhhHHHHhhhccCCChHHHHHHhhcC
Q 003165 170 DGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLH--GWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~--g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (843)
++.+..+.+ ...+.. .+...++|++|+.. |+...+... .+.|.+
T Consensus 150 ~~~~~~~~i-------~~~l~~-----------~~~~~~~pi~sa~~~~Gv~dl~~~~----------------~~~~~~ 195 (529)
T 2h5e_A 150 DPMELLDEV-------ENELKI-----------GCAPITWPIGCGKLFKGVYHLYKDE----------------TYLYQS 195 (529)
T ss_dssp CHHHHHHHH-------HHHHCC-----------EEEESEEEESCGGGCCEEEETTTTE----------------EEECCT
T ss_pred cHHHHHHHH-------HHHhCC-----------CccceecceecccCcceeeehhhhh----------------Hhhhcc
Confidence 754433322 222210 12223556666643 443322211 222211
Q ss_pred cccCcCC-CceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hhh
Q 003165 248 NFFDPAT-KKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QTW 325 (843)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~ 325 (843)
. .+.. ..+...+ + ... + .|.+. .+++++++|+++ .++..++.. ..+.+++. .++
T Consensus 196 ~--~g~~~~~~~~i~-~---~~~--------~--~l~e~---~~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~ 251 (529)
T 2h5e_A 196 G--KGHTIQEVRIVK-G---LNN--------P--DLDAA---VGEDLAQQLRDE--LELVKGASN---EFDKELFLAGEI 251 (529)
T ss_dssp T--CCSSCCCCCEEC-C---SSC--------H--HHHHH---HCHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSE
T ss_pred c--CCCcccccccCC-C---CCH--------H--HHHHh---hCHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCce
Confidence 0 0000 0000000 0 000 0 11222 145667777766 222222221 11223333 467
Q ss_pred ccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCC-CCCeEEEEEEeee---cCCCCc
Q 003165 326 LPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDP-NGPLMLYVSKMIP---ASDKGR 391 (843)
Q Consensus 326 ~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~plva~VfK~~~---~~~~g~ 391 (843)
+|+ ++.|||+|++++|+|.+.+.. ...+++ ++||+|+|||+.. ++++|+
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~ 314 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR 314 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce
Confidence 785 689999999999999754320 001222 6899999999976 355777
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeecC
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTNE 470 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~~ 470 (843)
++|+|||||+|++||.|++.+ .++ .++|++++.++|.+++++++|.|||||++.|++++ ++| |||+.
T Consensus 315 -i~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~ 382 (529)
T 2h5e_A 315 -VAFMRVVSGKYEKGMKLRQVR----TAK-----DVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQG 382 (529)
T ss_dssp -CEEEEEEESCEETTCEEEETT----TTE-----EEECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESS
T ss_pred -EEEEEEecCeEcCCCEEEEee----CCC-----EEEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecC
Confidence 999999999999999999653 233 27999999999999999999999999999999987 667 99986
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhhc
Q 003165 471 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDDF 549 (843)
Q Consensus 471 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f 549 (843)
+ ...+++++++ +|+++++|+|+++.|.+||.+||++|++||| +++..+ +|||++|+|||||||||+++||+++|
T Consensus 383 ~---~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey 457 (529)
T 2h5e_A 383 E---MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY 457 (529)
T ss_dssp C---CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS
T ss_pred C---ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 5 3567888876 8999999999999999999999999999998 888876 89999999999999999999999999
Q ss_pred CCCcEEEEeccEEeEeeccccc
Q 003165 550 MGGAEIIKSDPVVSFRETVLEK 571 (843)
Q Consensus 550 ~~~v~v~~~~p~V~yrETi~~~ 571 (843)
|+++.+++|+|+|||||...
T Consensus 458 --~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 --NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp --SCCEEEECCCCSEEEEEECS
T ss_pred --CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.7e-61 Score=560.11 Aligned_cols=440 Identities=20% Similarity=0.282 Sum_probs=334.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc--------eEeecCcccccccCeeEeeeeEEEEEeecccccc
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRADEAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.+++|||+|+||+|+|||||+++|++..|.+.. .|. ...+|+.+.|+++|+|+.++...+.|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------- 80 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------- 80 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-------
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-------
Confidence 457899999999999999999999999998854 221 347889999999999999999988886
Q ss_pred cccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccc
Q 003165 88 SYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~ 167 (843)
++.++|||||||.+|..++.++++.+|+||+|+|+++|++.|+..+|+++...++|+++|+||+|+.
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~---- 147 (528)
T 3tr5_A 81 ---------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD---- 147 (528)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC----
T ss_pred ---------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccC--ccceeeehhhHHHHhhhccCCChHHHHHHhh
Q 003165 168 QVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
+.++.+..+.+++ .++. .+...++|++++ +.|. +|+.....+.|
T Consensus 148 ~~~~~~~l~ei~~---~l~~---------------~~~~~~~pig~~~~f~gv----------------~dl~~~~~~~~ 193 (528)
T 3tr5_A 148 TRPSIELLDEIES---ILRI---------------HCAPVTWPIGMGKYFKGI----------------YHLIEDAIYLY 193 (528)
T ss_dssp CSCHHHHHHHHHH---HHCC---------------EEEESEEEESCGGGCCEE----------------EETTTTEEEEC
T ss_pred cccHHHHHHHHHH---hhCC---------------CceeeecccccCCceeEE----------------EEeecCEEEEe
Confidence 7775544333322 2211 122234555544 3333 33333334444
Q ss_pred cCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHH-hh
Q 003165 246 GENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVM-QT 324 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~-~~ 324 (843)
.+. ........+ ...... ++ +++..+. ++ +++|++++ ++..++... .+++++. .+
T Consensus 194 ~~~----~~~~~~~~~-----~~~~~~----~~---~~~~~l~--~~-~~~~~e~~--~l~~~~~~~---~~~~~~~~~~ 249 (528)
T 3tr5_A 194 QPG----KHERVGESE-----RIEGIN----NP---ELDKKLG--DL-ASELRNEI--ELVKGASHP---FEREGYLKGE 249 (528)
T ss_dssp CTT----SSSSTTCSC-----EEECTT----CH---HHHHHHT--HH-HHHHHHHH--HHHHHHSCC---CCHHHHHTTS
T ss_pred cCC----CCCcccccc-----cccccc----hH---HHHHHHH--HH-HHHHhhhc--chhhhhhhH---HHHHHHhcCc
Confidence 321 000000000 000000 00 1111111 11 56666652 222221110 0133333 57
Q ss_pred hccc----------hHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccC-CCCCeEEEEEEeee--cC-CCC
Q 003165 325 WLPA----------SSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCD-PNGPLMLYVSKMIP--AS-DKG 390 (843)
Q Consensus 325 ~~P~----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~plva~VfK~~~--~~-~~g 390 (843)
++|+ ++.|||+|++++|+|.+..... ..++ .++|++|+|||+.. ++ ++|
T Consensus 250 ~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g 312 (528)
T 3tr5_A 250 LTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRD 312 (528)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred eeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCc
Confidence 7886 7999999999999996543210 0122 36899999999986 67 778
Q ss_pred cceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEeccccccccce-eeec
Q 003165 391 RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNA-TLTN 469 (843)
Q Consensus 391 ~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-Tl~~ 469 (843)
+ ++|+|||||+|++|+.|++. +.+++ +||++++.++|++++++++|.|||||++.|++++ ++| |||+
T Consensus 313 ~-l~~~RV~sG~l~~g~~v~~~----~~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~ 380 (528)
T 3tr5_A 313 R-IAFLRIASGQYQKGMKAYHV----RLKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQ 380 (528)
T ss_dssp E-EEEEEEEESCEETTEEEEET----TTTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEES
T ss_pred e-EEEEEEecCeEcCCCEEEec----CCCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcC
Confidence 7 99999999999999999964 33333 7999999999999999999999999999999987 778 9998
Q ss_pred CCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CccceEEEecchhHHHHHHHHHHhh
Q 003165 470 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIE-ESGEHIVAGAGELHLEICLKDLQDD 548 (843)
Q Consensus 470 ~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~ 548 (843)
.. ...+.+++++ .|+++++|+|+++.|.+||.+||++|.+|||+ ++..+ +|||++|+|||||||||+++||+++
T Consensus 381 ~~---~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~e 455 (528)
T 3tr5_A 381 GE---RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENE 455 (528)
T ss_dssp SC---CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHH
T ss_pred CC---CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 43 5667788876 89999999999999999999999999999997 66666 8999999999999999999999999
Q ss_pred cCCCcEEEEeccEEeEeeccccc
Q 003165 549 FMGGAEIIKSDPVVSFRETVLEK 571 (843)
Q Consensus 549 f~~~v~v~~~~p~V~yrETi~~~ 571 (843)
| |+++.+++|+|+|+|+|...
T Consensus 456 y--~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 456 Y--NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp H--CCCEEEECCSCCEEEEEECS
T ss_pred h--CcEEEEecCceEEEEEecCC
Confidence 9 99999999999999999754
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.9e-38 Score=337.98 Aligned_cols=195 Identities=23% Similarity=0.381 Sum_probs=158.8
Q ss_pred EEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCCC----CC-----hhHHHHHHHHHHhcCCcEEEEE
Q 003165 453 AMVGLDQFITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCTI 522 (843)
Q Consensus 453 ~i~gl~~~~~~tg-Tl~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~----~d-----~~kl~~aL~~L~~eDPsl~v~~ 522 (843)
|++||+++ ++| |||+.. .+.+++++.++ +|+++++|+|.+. +| ..+|.++|++|.++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~--~p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQN--AVEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCC--CcccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57899987 677 999887 56778888886 9999999999987 65 6799999999999999999999
Q ss_pred c-CccceEEEecchhHHHHHHHHHHhhcCCCcEEEEeccEEeEeecccccccceeeeecCCCceEEEEEEeeCchhhHhH
Q 003165 523 E-ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 601 (843)
Q Consensus 523 ~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~i~~~~~Pl~~~~~~~ 601 (843)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt----~----------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE----D----------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE----T-----------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE----C-----------------------------
Confidence 8 8999999999999999999999999 8999999999999996 0
Q ss_pred HhcCCCCCCCChhHHHHHhhhhcCCchhccceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCCCCCC
Q 003165 602 IDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681 (843)
Q Consensus 602 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~P~~~g~~~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 681 (843)
|
T Consensus 121 ---------------------------------------------------G---------------------------- 121 (332)
T 3e3x_A 121 ---------------------------------------------------G---------------------------- 121 (332)
T ss_dssp ---------------------------------------------------T----------------------------
T ss_pred ---------------------------------------------------C----------------------------
Confidence 1
Q ss_pred ccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeeccc
Q 003165 682 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 761 (843)
Q Consensus 682 v~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~ 761 (843)
+||||||+++|.||++++|+|+++|++|||+|.+++..
T Consensus 122 ------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~ 159 (332)
T 3e3x_A 122 ------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD 159 (332)
T ss_dssp ------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC
T ss_pred ------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC
Confidence 78999999999999999999999999999999999886
Q ss_pred CCCCcEEEEEEeechhhcCchHHHhhhCCCceEeeeEecceeec-CCCCC
Q 003165 762 PGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMM-SSDPL 810 (843)
Q Consensus 762 ~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~~~~ 810 (843)
++ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++ |++.-
T Consensus 160 ~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 160 GK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp SS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred CC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccc
Confidence 53 58899999999999999999999999999999999999999 89864
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=8.7e-29 Score=281.67 Aligned_cols=286 Identities=20% Similarity=0.300 Sum_probs=204.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
.+..+||+++||+|+|||||+++|++.++.+.+.. .|. .+++|..++|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35678999999999999999999999998876532 121 357899999999999999988877775
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-------ccHHHHHHHHHcCCCc-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-------~qt~~~l~~~~~~~~p- 152 (843)
++.++|||||||.+|...+..+++.+|++|||||+.+|+. +||++++..+...++|
T Consensus 94 ----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 94 ----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred ----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 7899999999999999999999999999999999999986 7999999999999999
Q ss_pred eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeee-cceeecccCccceeeehhhHHHHhhh
Q 003165 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
+|+++||||+. ..+.. ..+++.+.+++..++..+... |. ...+...|+..|++..
T Consensus 158 iIvviNK~Dl~----~~~~~--~~~~~~i~~~~~~~l~~~g~~--------~~~~~~~i~iSA~~G~ni~---------- 213 (439)
T 3j2k_7 158 LIVLINKMDDP----TVNWS--NERYEECKEKLVPFLKKVGFN--------PKKDIHFMPCSGLTGANLK---------- 213 (439)
T ss_pred EEEEeecCCCc----ccchH--HHHHHHHHHHHHHHHHHhccc--------ccCCeeEEEeeccCCcccc----------
Confidence 78899999986 44321 223444455555444322111 10 1123445666655321
Q ss_pred ccCCChHHHHH-HhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHH
Q 003165 232 KFGVDESKMME-RLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK 310 (843)
Q Consensus 232 ~~~i~~~~l~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 310 (843)
.+.. .-| |+ .
T Consensus 214 -------~l~~~~~w----~~-------------------------------------g--------------------- 224 (439)
T 3j2k_7 214 -------EQSDFCPW----YI-------------------------------------G--------------------- 224 (439)
T ss_pred -------cccccccc----cC-------------------------------------c---------------------
Confidence 0000 011 00 0
Q ss_pred hhhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCC
Q 003165 311 DLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKG 390 (843)
Q Consensus 311 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g 390 (843)
..|++.+ +.+|.|. .+.++|+.+.|..++. +.|
T Consensus 225 -------------------~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~~G 257 (439)
T 3j2k_7 225 -------------------LPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--DMG 257 (439)
T ss_pred -------------------hHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--CCC
Confidence 1123322 2355552 1245788888888764 456
Q ss_pred cceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEE--Eeccccccccce-ee
Q 003165 391 RFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQFITKNA-TL 467 (843)
Q Consensus 391 ~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~--i~gl~~~~~~tg-Tl 467 (843)
. +..+||.+|+|++||.|.++..+ . ..+|.+|+. ...++++|.|||+|+ +.|++..-++.| +|
T Consensus 258 ~-v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 258 T-VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred e-EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 5 89999999999999999986422 1 268888875 457899999999999 567775544567 77
Q ss_pred ecCC
Q 003165 468 TNEK 471 (843)
Q Consensus 468 ~~~~ 471 (843)
+++.
T Consensus 324 ~~~~ 327 (439)
T 3j2k_7 324 CDPS 327 (439)
T ss_pred cCCC
Confidence 7755
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.96 E-value=1.7e-29 Score=284.34 Aligned_cols=283 Identities=22% Similarity=0.300 Sum_probs=196.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..||+++||+|||||||+++|++..........-....+|..++|+++|+|+......+.+. ++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~~ 66 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------AR 66 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------SC
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------Ce
Confidence 46899999999999999999987532110000001124788899999999999876655443 68
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccccCCHHHHHHH
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~~~~ 177 (843)
.++|||||||.+|...+..+++.+|++|+|+|+++|...||+++|..+...++| +++++||+|+. + +. + .
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~---~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-E---M 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-H---H
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-H---H
Confidence 999999999999999999999999999999999999999999999998889999 57899999987 4 32 1 1
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCCce
Q 003165 178 FSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
++.+.+++..++..+... +...++...|+..|+. ..
T Consensus 138 ~~~~~~~~~~~l~~~~~~--------~~~~~~i~~SA~~g~n--------------------------------~~---- 173 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYK--------GEETPIIVGSALCALE--------------------------------QR---- 173 (397)
T ss_dssp HHHHHHHHHHHHHHTTSC--------TTTSCEEECCHHHHHT--------------------------------TC----
T ss_pred HHHHHHHHHHHHHHcCCC--------cccCcEEEeehhhccc--------------------------------cc----
Confidence 222223333333221100 0001222233322210 00
Q ss_pred eecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccc-hHHHHHHH
Q 003165 258 TTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPA-SSALLEMM 336 (843)
Q Consensus 258 ~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~LLd~i 336 (843)
.+-| ... +..|++++
T Consensus 174 -------------------~~~~---------------------------------------------~~g~i~~Ll~~l 189 (397)
T 1d2e_A 174 -------------------DPEL---------------------------------------------GLKSVQKLLDAV 189 (397)
T ss_dssp -------------------CTTT---------------------------------------------THHHHHHHHHHH
T ss_pred -------------------CCCc---------------------------------------------cCCcHHHHHHHH
Confidence 0000 000 24578888
Q ss_pred HhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCC
Q 003165 337 IFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~ 416 (843)
.+++|.|.. +.++|+.+.|++++..++.|. ++++||++|+|++||.|++++.+.
T Consensus 190 ~~~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~~ 243 (397)
T 1d2e_A 190 DTYIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHSK 243 (397)
T ss_dssp HHHSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETTE
T ss_pred HHhCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCCC
Confidence 899998831 245789999999988888887 999999999999999999875320
Q ss_pred CCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eeecCC
Q 003165 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~~~~ 471 (843)
....+|.+|... ..++++|.|||+|++. |++..-.+.| +|+++.
T Consensus 244 -------~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 244 -------NIRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp -------EEEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred -------CeEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 013688888643 3689999999999886 6643333566 888754
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.96 E-value=6.6e-29 Score=280.51 Aligned_cols=295 Identities=26% Similarity=0.363 Sum_probs=200.8
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhc---CCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.....+||+++||+|||||||+++|++.. |.... .-....+|..++|+++|+|+......+.+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~----------- 73 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVE--VKDYGDIDKAPEERARGITINTAHVEYETA----------- 73 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSC--CCCHHHHSCSHHHHHHTCCCSCEEEEEECS-----------
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCcccc--ccchhhccCCHHHHHcCCCEEeeeeEeccC-----------
Confidence 34567899999999999999999998742 11000 001125788999999999999876665553
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccccCC
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~ 170 (843)
++.++|||||||.+|...+..+++.+|++|+|+|+++|...||+++|..+...++| +++++||+|+. + +
T Consensus 74 -----~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~-~ 143 (405)
T 2c78_A 74 -----KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D-D 143 (405)
T ss_dssp -----SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-C
T ss_pred -----CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-c
Confidence 68999999999999999999999999999999999999999999999999889999 67899999987 4 3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCccc
Q 003165 171 GEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
.+ . ++.+.+++..++..+... +...++...|+.+|+.. ... ...
T Consensus 144 ~~-~---~~~~~~~~~~~l~~~~~~--------~~~~~~i~~SA~~g~~v--------------------~~~--~~~-- 187 (405)
T 2c78_A 144 PE-L---LDLVEMEVRDLLNQYEFP--------GDEVPVIRGSALLALEQ--------------------MHR--NPK-- 187 (405)
T ss_dssp HH-H---HHHHHHHHHHHHHHTTSC--------TTTSCEEECCHHHHHHH--------------------HHH--CTT--
T ss_pred HH-H---HHHHHHHHHHHHHHhccc--------ccCCCEEEccHHHhhhh--------------------hcc--ccc--
Confidence 21 1 222222333333221100 00012333444333210 000 000
Q ss_pred CcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchH
Q 003165 251 DPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASS 330 (843)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 330 (843)
+.. + .+ .|.+.+.
T Consensus 188 ------~~~---~-------------~~---------------------------------------------~~~~~i~ 200 (405)
T 2c78_A 188 ------TRR---G-------------EN---------------------------------------------EWVDKIW 200 (405)
T ss_dssp ------CCT---T-------------SC---------------------------------------------HHHHHHH
T ss_pred ------ccc---C-------------CC---------------------------------------------cccccHH
Confidence 000 0 00 0111135
Q ss_pred HHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEE
Q 003165 331 ALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVR 410 (843)
Q Consensus 331 ~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~ 410 (843)
.|++++.+++|.|.. +.++|+.+.|..++..++.|. ++++||+||+|+.||.|+
T Consensus 201 ~Ll~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~ 254 (405)
T 2c78_A 201 ELLDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEVE 254 (405)
T ss_dssp HHHHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEE
T ss_pred HHHHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEEE
Confidence 688999999998831 245789999888888888887 899999999999999999
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eeecCC
Q 003165 411 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (843)
Q Consensus 411 v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~~~~ 471 (843)
+++.+. + ....+|.+|... ..++++|.|||+|++. |++..-.+.| +|+++.
T Consensus 255 ~~~~~~--~----~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 255 IVGLAP--E----TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EESSSS--S----CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred EeCCCC--C----eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 875321 0 023688888642 3789999999999886 6543223566 888754
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=9.3e-30 Score=297.90 Aligned_cols=335 Identities=19% Similarity=0.208 Sum_probs=213.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC--cCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNG 95 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~ 95 (843)
+..+|+|+||+|||||||+++|+..... ++ ..+|+|.......+.+............ ..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 4568999999999999999999764211 11 1145665554444443210000000000 0011
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccccccCC-----
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD----- 170 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~~~~~~----- 170 (843)
+...++|||||||.+|..++.++++.+|++|+|+|+++|+++||.++|+++...++|+++|+||||+.- .++
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~---~~~~~~~~ 144 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH---GWRVHEGR 144 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST---TCCCCTTC
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc---ccccccCC
Confidence 233699999999999999999999999999999999999999999999999999999999999999861 111
Q ss_pred ---------HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHH
Q 003165 171 ---------GEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMM 241 (843)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~ 241 (843)
.+++.+.+.+.+.++...+.... +.+. .+. +..
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e----~~~-~l~------------------------- 186 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESE----RFD-RVT------------------------- 186 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEE----EGG-GCS-------------------------
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchH----HHH-HHH-------------------------
Confidence 13333334443333322221100 0000 000 000
Q ss_pred HHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHH
Q 003165 242 ERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRV 321 (843)
Q Consensus 242 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i 321 (843)
-|+.. -.+.... +..+ +
T Consensus 187 --~~~~~------vpvv~vS------------------------A~tG--~----------------------------- 203 (594)
T 1g7s_A 187 --DFASQ------VSIIPIS------------------------AITG--E----------------------------- 203 (594)
T ss_dssp --CTTTE------EEEEECC------------------------TTTC--T-----------------------------
T ss_pred --hccCc------ceEEEEe------------------------ccCC--C-----------------------------
Confidence 00000 0000000 0000 0
Q ss_pred HhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEee
Q 003165 322 MQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
Q Consensus 322 ~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SG 401 (843)
.+..||+++..++|+|.+. ...+++++|+.++|||+..+++.|. ++++||++|
T Consensus 204 ------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~-v~~~rV~~G 256 (594)
T 1g7s_A 204 ------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM-TIDAVIYDG 256 (594)
T ss_dssp ------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE-EEEEEEEES
T ss_pred ------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE-EEEEEEeeC
Confidence 0244666666666655321 0124567899999999999998887 999999999
Q ss_pred EEecCCEEEEcCCCCCCCCccccceeeeceEEEEe--------cCceeeeCccc--CCCeEEEeccccccccce-eeecC
Q 003165 402 KVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQFITKNA-TLTNE 470 (843)
Q Consensus 402 tL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~v~~a~--AGdIv~i~gl~~~~~~tg-Tl~~~ 470 (843)
+|++||.|++.+. +.. ...+|.+|+.+. |.+..++++|. ||++|++.||+++ .+| ||+..
T Consensus 257 ~Lk~Gd~v~~~~~----~~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~--~~Gd~l~~~ 327 (594)
T 1g7s_A 257 ILRKDDTIAMMTS----KDV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV--MAGSPLRVV 327 (594)
T ss_dssp EEETTCEEEEEBS----SSE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB--CTTCEEEEC
T ss_pred EEeeCCEEEECCC----CCc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC--CCCCEEEec
Confidence 9999999997532 111 125999999873 67788999998 9999999999987 667 88876
Q ss_pred CCCCcc--------cccccccCCCceEEEEEEeCCCCChhHHHHHHHHH
Q 003165 471 KEVDAH--------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511 (843)
Q Consensus 471 ~~~~~~--------~~~~~~~~~~Pv~~~aIep~~~~d~~kl~~aL~~L 511 (843)
. ... .+..+... .+.+.+.|.+...+..+.|.++|+++
T Consensus 328 ~--~~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 328 T--DPEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp S--SHHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 5 210 12223332 56677888888888888888888886
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1.6e-28 Score=279.58 Aligned_cols=131 Identities=35% Similarity=0.500 Sum_probs=103.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEEEee
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
+..+||+++||+|||||||+++|++.++.+.+.. .|. .+++|+.++|+++|+|++.....+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 4578999999999999999999999877665321 121 146899999999999999887766664
Q ss_pred cccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHcCCCc-e
Q 003165 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR-P 153 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~~~~p-~ 153 (843)
++.++|||||||.+|..++..+++.+|++|+|+|+++| +..||++++..+...++| +
T Consensus 83 ---------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp ---------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 78999999999999999999999999999999999999 889999999998888885 7
Q ss_pred EEEEECCccc
Q 003165 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNKiD~~ 163 (843)
++++||||+.
T Consensus 148 ivviNK~Dl~ 157 (435)
T 1jny_A 148 IVAVNKMDLT 157 (435)
T ss_dssp EEEEECGGGS
T ss_pred EEEEEcccCC
Confidence 7899999998
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=5.8e-29 Score=292.28 Aligned_cols=288 Identities=21% Similarity=0.269 Sum_probs=169.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
.+.++||+|+||+|||||||+++|++.++.+.... .|. .+++|..++|+++|+|+......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34688999999999999999999999887775431 121 468999999999999999988777765
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-------cccHHHHHHHHHcCCCc-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~qt~~~l~~~~~~~~p- 152 (843)
++.++|||||||.+|...+..+++.+|++|||||+++|. .+||++++..+...++|
T Consensus 254 ----------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~ 317 (592)
T 3mca_A 254 ----------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISE 317 (592)
T ss_dssp ---------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCC
T ss_pred ----------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCe
Confidence 689999999999999999999999999999999999864 89999999999999998
Q ss_pred eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhh-hhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhh
Q 003165 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
+|+|+||||+. +++.+. +..+.+++..++ ..+. +.+....+...|+..|++..-.
T Consensus 318 iIvviNKiDl~----~~~~~~----~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~-------- 373 (592)
T 3mca_A 318 IVVSVNKLDLM----SWSEDR----FQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQK-------- 373 (592)
T ss_dssp EEEEEECGGGG----TTCHHH----HHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSC--------
T ss_pred EEEEEeccccc----cccHHH----HHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCcccccc--------
Confidence 77899999998 766443 333444444444 2111 1111113444566666532100
Q ss_pred ccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHh
Q 003165 232 KFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKD 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~ 311 (843)
.... ..-|
T Consensus 374 ----~~~~--~~~w------------------------------------------------------------------ 381 (592)
T 3mca_A 374 ----DSSD--LYKW------------------------------------------------------------------ 381 (592)
T ss_dssp ----CCCG--GGGT------------------------------------------------------------------
T ss_pred ----cccc--cccc------------------------------------------------------------------
Confidence 0000 0001
Q ss_pred hhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCc
Q 003165 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~ 391 (843)
.-. ..|++++.+++|.+ .+.++|+.+.|..++.. ..|.
T Consensus 382 --------------~~g-~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~g~ 419 (592)
T 3mca_A 382 --------------YKG-PTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PRSV 419 (592)
T ss_dssp --------------CCS-CCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TTEE
T ss_pred --------------cch-HHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CCeE
Confidence 000 13566666666622 12457888888888876 5554
Q ss_pred ceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeC-cccCCCeEEE--eccccccccce-ee
Q 003165 392 FFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQFITKNA-TL 467 (843)
Q Consensus 392 ~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~-~a~AGdIv~i--~gl~~~~~~tg-Tl 467 (843)
+..+||.+|+|++||.|.+++.+ . ..+|..|.. ...+++ +|.|||+|++ .|++..-++.| +|
T Consensus 420 -v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl 485 (592)
T 3mca_A 420 -TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL 485 (592)
T ss_dssp -EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEE
T ss_pred -EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEEEe
Confidence 88999999999999999986422 1 268888884 346789 9999999985 57664434567 88
Q ss_pred ecCC
Q 003165 468 TNEK 471 (843)
Q Consensus 468 ~~~~ 471 (843)
|++.
T Consensus 486 ~~~~ 489 (592)
T 3mca_A 486 SNYE 489 (592)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8765
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=7.8e-27 Score=269.20 Aligned_cols=301 Identities=20% Similarity=0.313 Sum_probs=190.3
Q ss_pred hhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeE
Q 003165 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGI 75 (843)
Q Consensus 11 ~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~ 75 (843)
..+.......||+++||+|+|||||+++|++..+.+... ..|. .+++|....|+++|+|+.....
T Consensus 25 ~~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~ 104 (483)
T 3p26_A 25 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 104 (483)
T ss_dssp HHHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEE
T ss_pred HHHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeE
Confidence 333445567899999999999999999999998876542 1121 3578999999999999999888
Q ss_pred EEEEeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHc
Q 003165 76 SLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALG 148 (843)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~ 148 (843)
.+.+. ++.++|||||||.+|...+..+++.+|++|+|+|+.+| +..||++++..+..
T Consensus 105 ~~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~ 168 (483)
T 3p26_A 105 HFSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS 168 (483)
T ss_dssp EEECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH
T ss_pred EEecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH
Confidence 77664 78999999999999999999999999999999999998 67899999999888
Q ss_pred CCCc-eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHH
Q 003165 149 ERIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAK 227 (843)
Q Consensus 149 ~~~p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~ 227 (843)
.+++ +|+++||||+. +++.+. ++++.+++..++..+.. .+....+...|+..|.+..-
T Consensus 169 ~~~~~iIvviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g~--------~~~~~~~i~iSA~~g~gi~e----- 227 (483)
T 3p26_A 169 LGIHNLIIAMNKMDNV----DWSQQR----FEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGVYK----- 227 (483)
T ss_dssp TTCCCEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHTC--------CGGGEEEEECCSSSCTTSSS-----
T ss_pred cCCCcEEEEEECcCcc----cchHHH----HHHHHHHHHHHHHHcCC--------CcccceEEEEeeecCCCccc-----
Confidence 8875 77899999998 655322 33333333333322111 01111333456655542210
Q ss_pred HhhhccCCChHHHHHHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCCh
Q 003165 228 MYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKS 307 (843)
Q Consensus 228 ~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~ 307 (843)
+.. .....-| |..
T Consensus 228 -------l~~-~~~~~~w----y~g------------------------------------------------------- 240 (483)
T 3p26_A 228 -------IEY-TDEVRQW----YNG------------------------------------------------------- 240 (483)
T ss_dssp -------SCC-CHHHHHH----CCS-------------------------------------------------------
T ss_pred -------cCc-ccccccc----cCC-------------------------------------------------------
Confidence 000 0000112 000
Q ss_pred HHHhhhhHHHHHHHHhhhccchHHHHHHHHhcCCC--chhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeee
Q 003165 308 EEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPS--PSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIP 385 (843)
Q Consensus 308 ~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~ 385 (843)
|....+|+.+...+|. |. .+.+.|+.+.|..++.
T Consensus 241 -------------------~~L~~~L~~i~~~~~~~~p~-------------------------~~~~~p~r~~v~~v~~ 276 (483)
T 3p26_A 241 -------------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIP 276 (483)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHTT-------------------------CCSSSCCEEEEEEEEC
T ss_pred -------------------CCHHHHHHHHHhhccccccc-------------------------ccCCCceEEEEEEEEc
Confidence 0012244444444443 21 1245788888888876
Q ss_pred cC---CCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCeEEEe--c
Q 003165 386 AS---DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV--G 456 (843)
Q Consensus 386 ~~---~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdIv~i~--g 456 (843)
.+ ..|. +..+||.+|+|++||.|.++..+ . ..+|.+|.... |.+..++++|.|||+|++. +
T Consensus 277 ~~~~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 277 SKKTSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp ---CCSCCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred cCCcCCCce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 54 2454 89999999999999999986422 1 26888888653 4557899999999999983 3
Q ss_pred --cccccccce-eeecCC
Q 003165 457 --LDQFITKNA-TLTNEK 471 (843)
Q Consensus 457 --l~~~~~~tg-Tl~~~~ 471 (843)
.++. +.| +|++..
T Consensus 347 ~~~~di--~rG~vl~~~~ 362 (483)
T 3p26_A 347 AYPEDI--QNGDLAASVD 362 (483)
T ss_dssp CCGGGC--CTTCEEECTT
T ss_pred cccccC--CceEEEEcCC
Confidence 3443 556 888765
No 21
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=4.2e-27 Score=269.91 Aligned_cols=131 Identities=27% Similarity=0.380 Sum_probs=85.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEEEee
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
+...||+++||+|||||||+++|++.+|.+.+. ..|. .+.+|..++|+++|+|+......+.++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 457899999999999999999999988876431 1231 357899999999999999887777664
Q ss_pred cccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-------cccHHHHHHHHHcCCCc-e
Q 003165 82 TDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR-P 153 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~qt~~~l~~~~~~~~p-~ 153 (843)
++.++|||||||.+|...+.++++.+|++|||||+++|+ .+||++++..+...++| +
T Consensus 120 ---------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ---------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 689999999999999999999999999999999999997 38999999999889998 7
Q ss_pred EEEEECCccc
Q 003165 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNKiD~~ 163 (843)
|+++||||+.
T Consensus 185 ivviNK~Dl~ 194 (467)
T 1r5b_A 185 VVVINKMDEP 194 (467)
T ss_dssp EEEEECTTST
T ss_pred EEEEECccCC
Confidence 8899999996
No 22
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=2.4e-27 Score=286.78 Aligned_cols=284 Identities=21% Similarity=0.332 Sum_probs=183.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....||+++||+|||||||+++|++..........-....+|..++|+++|+|+....+.+.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~---------------- 357 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP---------------- 357 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS----------------
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC----------------
Confidence 4578999999999999999999987531100000001235788899999999999877665543
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccccccccCCHHHHH
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~~~~~~~~~~~~~ 175 (843)
++.++|||||||.+|...+..+++.+|++|+|||+++|+.+||+++|..+...++| +|+++||||+. + +. +
T Consensus 358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~-e-- 429 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE-E-- 429 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-H--
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-h--
Confidence 68999999999999999999999999999999999999999999999988888999 67899999987 4 22 1
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhccCCChHHHHHHhhcCcccCcCCC
Q 003165 176 QTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
.++.+.+++..++..+... +...++...|+..||.
T Consensus 430 -~le~i~eEi~elLk~~G~~--------~~~vp~IpvSAktG~n------------------------------------ 464 (1289)
T 3avx_A 430 -LLELVEMEVRELLSQYDFP--------GDDTPIVRGSALKALE------------------------------------ 464 (1289)
T ss_dssp -HHHHHHHHHHHHHHHTTSC--------TTTCCEEECCSTTTTT------------------------------------
T ss_pred -hHHHHHHHHHHHHHhcccc--------ccceeEEEEEeccCCC------------------------------------
Confidence 2222333333333321100 0001223334433220
Q ss_pred ceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHHhhhhHHHHHHHHhhhccchHHHHHH
Q 003165 256 KWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEM 335 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 335 (843)
. .+-| ++ .+..|+++
T Consensus 465 ----------g----------~~~w--~e-------------------------------------------GI~eLlea 479 (1289)
T 3avx_A 465 ----------G----------DAEW--EA-------------------------------------------KILELAGF 479 (1289)
T ss_dssp ----------C----------CHHH--HH-------------------------------------------HHHHHHHH
T ss_pred ----------C----------Cccc--cc-------------------------------------------cchhhHhH
Confidence 0 0001 00 02457888
Q ss_pred HHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCC
Q 003165 336 MIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPN 415 (843)
Q Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n 415 (843)
+.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.+++.+
T Consensus 480 L~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps~ 533 (1289)
T 3avx_A 480 LDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGIK 533 (1289)
T ss_dssp HHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESSS
T ss_pred HhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecCC
Confidence 8899998831 135788888888877788887 99999999999999999987532
Q ss_pred CCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-eeecCC
Q 003165 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA-TLTNEK 471 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-Tl~~~~ 471 (843)
.. ...+|..|... ..++++|.|||+|++. |++..-++.| +|+++.
T Consensus 534 ----~~---~~~kVksI~~~----~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 534 ----ET---QKSTCTGVEMF----RKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp ----SC---EEEEEEEEECS----SCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ----Cc---eeEEEEEEeec----CceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 10 12688888542 3678999999998875 6643333566 888654
No 23
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.94 E-value=3.3e-26 Score=260.61 Aligned_cols=144 Identities=26% Similarity=0.318 Sum_probs=109.6
Q ss_pred HHHhhhcc--cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCccccc----------CCce-------EeecCcccccccCe
Q 003165 8 GLRRIMDF--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRADEAERGI 68 (843)
Q Consensus 8 ~~~~~~~~--~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-------~~~d~~~~E~~rgi 68 (843)
.+.+++.. .+..+||+++||+|||||||+++|++..+.+.... .|++ +.+|..++|++||+
T Consensus 11 ~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGi 90 (434)
T 1zun_B 11 DILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90 (434)
T ss_dssp -----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----C
T ss_pred hHHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCc
Confidence 34454443 24568999999999999999999999876554321 1221 24788999999999
Q ss_pred eEeeeeEEEEEeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc
Q 003165 69 TIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 148 (843)
Q Consensus 69 Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~ 148 (843)
|++.+...+.+. +..++|||||||.+|...+..+++.+|++|+|+|+.+|..+||++++..+..
T Consensus 91 Ti~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~ 154 (434)
T 1zun_B 91 TIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL 154 (434)
T ss_dssp CCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH
T ss_pred EEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 999877666554 7889999999999999999999999999999999999999999999988888
Q ss_pred CCCc-eEEEEECCccccccccCCH
Q 003165 149 ERIR-PVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 149 ~~~p-~ilviNKiD~~~~~~~~~~ 171 (843)
.++| +++++||+|+. +++.
T Consensus 155 ~~~~~iIvviNK~Dl~----~~~~ 174 (434)
T 1zun_B 155 LGIKHIVVAINKMDLN----GFDE 174 (434)
T ss_dssp TTCCEEEEEEECTTTT----TSCH
T ss_pred cCCCeEEEEEEcCcCC----cccH
Confidence 8886 67899999998 6653
No 24
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=7.8e-27 Score=266.97 Aligned_cols=299 Identities=25% Similarity=0.356 Sum_probs=202.5
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEE
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~ 78 (843)
.......||+++||+|||||||+++|++..+.+... ..|. .+++|..++|+++|+|+......+.
T Consensus 2 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~ 81 (458)
T 1f60_A 2 GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (458)
T ss_dssp CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE
T ss_pred CCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe
Confidence 334456899999999999999999999987655431 1221 2357889999999999999887766
Q ss_pred EeecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccc-------cHHHHHHHHHcCCC
Q 003165 79 YEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGERI 151 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-------qt~~~l~~~~~~~~ 151 (843)
+. ++.++|||||||.+|...+..+++.+|++|+|||+++|..+ ||++++..+...++
T Consensus 82 ~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v 145 (458)
T 1f60_A 82 TP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGV 145 (458)
T ss_dssp CS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTC
T ss_pred cC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCC
Confidence 54 78999999999999999999999999999999999999766 99999988888898
Q ss_pred c-eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhh
Q 003165 152 R-PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYA 230 (843)
Q Consensus 152 p-~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~ 230 (843)
| +++++||||+. +++.+. +..+.+++..++..+.. .+...++...|+..|+...
T Consensus 146 ~~iivviNK~Dl~----~~~~~~----~~~i~~~~~~~l~~~g~--------~~~~~~~i~vSA~~g~nv~--------- 200 (458)
T 1f60_A 146 RQLIVAVNKMDSV----KWDESR----FQEIVKETSNFIKKVGY--------NPKTVPFVPISGWNGDNMI--------- 200 (458)
T ss_dssp CEEEEEEECGGGG----TTCHHH----HHHHHHHHHHHHHHHTC--------CGGGCCEEECCTTTCBTTT---------
T ss_pred CeEEEEEEccccc----cCCHHH----HHHHHHHHHHHHHHcCC--------CccCceEEEeecccCcCcc---------
Confidence 7 77899999988 665433 23333334333332211 0111133445666665321
Q ss_pred hccCCChHHHHH-HhhcCcccCcCCCceeec-CCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChH
Q 003165 231 SKFGVDESKMME-RLWGENFFDPATKKWTTK-NTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSE 308 (843)
Q Consensus 231 ~~~~i~~~~l~~-~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~ 308 (843)
++.. .-| |.. |... +.+. ++
T Consensus 201 --------~~~~~~~~----~~~----~~~~~~tg~----------------------------------------~~-- 222 (458)
T 1f60_A 201 --------EATTNAPW----YKG----WEKETKAGV----------------------------------------VK-- 222 (458)
T ss_dssp --------BCCSSCTT----CCC----EEEECSSSE----------------------------------------EE--
T ss_pred --------cccccCch----hhc----ccccccccc----------------------------------------cc--
Confidence 0000 012 110 1100 0000 00
Q ss_pred HHhhhhHHHHHHHHhhhccchHHHHHHHHhcCCCchhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecCC
Q 003165 309 EKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPASD 388 (843)
Q Consensus 309 el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~~ 388 (843)
...|++++.. +|.|. .+.+.|+.+.|..++..++
T Consensus 223 --------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g 256 (458)
T 1f60_A 223 --------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGG 256 (458)
T ss_dssp --------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETT
T ss_pred --------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCC
Confidence 0124555433 45551 1235788888888888788
Q ss_pred CCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe--ccccccccce-
Q 003165 389 KGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQFITKNA- 465 (843)
Q Consensus 389 ~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg- 465 (843)
.|. +..+||.+|+++.||.|.++..+ . ..+|.+|.. ...++++|.|||++++. |++..-.+.|
T Consensus 257 ~G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~ 322 (458)
T 1f60_A 257 IGT-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEM----HHEQLEQGVPGDNVGFNVKNVSVKEIRRGN 322 (458)
T ss_dssp TEE-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEE----TTEECSCBCTTCEEEEEESSCCTTTSCTTC
T ss_pred CcE-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEE----CCeEEEEEcCCCEEEEEEcCCcccccCcee
Confidence 776 99999999999999999986421 1 268888874 23689999999998874 6642223556
Q ss_pred eeecCC
Q 003165 466 TLTNEK 471 (843)
Q Consensus 466 Tl~~~~ 471 (843)
+|++.+
T Consensus 323 vl~~~~ 328 (458)
T 1f60_A 323 VCGDAK 328 (458)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 777654
No 25
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.94 E-value=2.3e-26 Score=255.42 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=94.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++||+++||+|+|||||+++|+ ++|+|++.+...+.+. +
T Consensus 20 ~m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~ 59 (370)
T 2elf_A 20 HMANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------G 59 (370)
T ss_dssp CEEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------S
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------C
Confidence 34599999999999999999993 5688998877666554 6
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEE-CCcc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDR 162 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviN-KiD~ 162 (843)
+.++|||||||.+|..++..+++.+|+||+||| .+|+.+||++++..+...++|. ++++| |||+
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 789999999999999999999999999999999 9999999999999999999998 88999 9996
No 26
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.94 E-value=5.6e-26 Score=256.94 Aligned_cols=134 Identities=30% Similarity=0.398 Sum_probs=103.0
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc--C
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--R 93 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~ 93 (843)
.+..+||+++||+|||||||+++|+ | ...|..++|+++|+|+..+...+.+...+.. ..+... .
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~-~~y~~~~~~ 72 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNC-GRYSTSPVC 72 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTT-CCEESSSBC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeeccccccc-ccccccccc
Confidence 3567899999999999999999994 2 1356778999999999888766665310000 000000 0
Q ss_pred C--CC----ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCC-ceEEEEECCccc
Q 003165 94 N--GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 94 ~--~~----~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~-p~ilviNKiD~~ 163 (843)
. ++ ...++|||||||.+|..++.++++.+|++|||||+++|+ .+||++++..+...++ |+++++||+|+.
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 0 11 278999999999999999999999999999999999998 8999999988777776 567899999987
No 27
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-26 Score=271.48 Aligned_cols=294 Identities=21% Similarity=0.324 Sum_probs=201.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eEeecCcccccccCeeEeeeeEEEEEe
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRADEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~d~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
.....||+++||+|+|||||+++|++..+.+... ..|. .+++|..+.|+++|+|+......+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3456799999999999999999999887776542 1221 356889999999999999988877765
Q ss_pred ecccccccccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc-------ccccHHHHHHHHHcCCCc-
Q 003165 81 MTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~qt~~~l~~~~~~~~p- 152 (843)
++.++|||||||.+|...+..+++.+|++|+|||+.+| +..||+.++..+...++|
T Consensus 244 ----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~ 307 (611)
T 3izq_1 244 ----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHN 307 (611)
T ss_dssp ----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCE
T ss_pred ----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCe
Confidence 78999999999999999999999999999999999998 578999999999888887
Q ss_pred eEEEEECCccccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeecceeecccCccceeeehhhHHHHhhhc
Q 003165 153 PVLTVNKMDRCFLELQVDGEEAYQTFSRVVENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (843)
Q Consensus 153 ~ilviNKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 232 (843)
+|+|+||+|+. +++.. ++.++.+++..++..+.. .+....+...|+..|.+.
T Consensus 308 iIVVvNKiDl~----~~~~~----~~~ei~~~l~~~l~~~g~--------~~~~~~~i~vSA~tG~gI------------ 359 (611)
T 3izq_1 308 LIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIGF--------FEDNINWVPISGFSGEGV------------ 359 (611)
T ss_dssp EEEEEECTTTT----TTCHH----HHHHHHHHHHHHHHHHTC--------CGGGCEEEECCTTTCTTT------------
T ss_pred EEEEEeccccc----chhHH----HHHHHHHHHHHHHHhhcc--------cccCccEEeeecccCCCc------------
Confidence 77899999988 65532 233333333333322111 011113334555554421
Q ss_pred cCCChHHHH--HHhhcCcccCcCCCceeecCCCcchhhhhhHHHhhchHHHHHHHHhccChhhHHHHHHhcCCCCChHHH
Q 003165 233 FGVDESKMM--ERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEK 310 (843)
Q Consensus 233 ~~i~~~~l~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~pi~~l~e~~~~~d~~~le~~l~~~~~~l~~~el 310 (843)
+..... ..-| |.+
T Consensus 360 ---~el~~~~~~~~W----y~g---------------------------------------------------------- 374 (611)
T 3izq_1 360 ---YKIEYTDEVRQW----YNG---------------------------------------------------------- 374 (611)
T ss_dssp ---SSCTTSCTTCCS----CCS----------------------------------------------------------
T ss_pred ---cccCcccccccc----ccC----------------------------------------------------------
Confidence 100000 0001 100
Q ss_pred hhhhHHHHHHHHhhhccchHHHHHHHHhcCCC--chhhcchhhcccccCCCCccccceecccCCCCCeEEEEEEeeecC-
Q 003165 311 DLMGKALMKRVMQTWLPASSALLEMMIFHLPS--PSTAQKYRVENLYEGPLDDQYANAIRNCDPNGPLMLYVSKMIPAS- 387 (843)
Q Consensus 311 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~plva~VfK~~~~~- 387 (843)
|....+|+.+...+|. |. ...+.|+.+.|..++..+
T Consensus 375 ----------------~~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~~ 413 (611)
T 3izq_1 375 ----------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKK 413 (611)
T ss_dssp ----------------CCHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCSS
T ss_pred ----------------CcHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccCc
Confidence 0012234444444444 21 124578888888877655
Q ss_pred --CCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCceeeeCcccCCCeEEE--ecc--
Q 003165 388 --DKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGL-- 457 (843)
Q Consensus 388 --~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdIv~i--~gl-- 457 (843)
..|. +..+||.+|+|++||.|.++..+ . ..+|.+|.... |....++++|.|||+|++ .|+
T Consensus 414 ~~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~ 483 (611)
T 3izq_1 414 TSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 483 (611)
T ss_dssp SCSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCT
T ss_pred cCCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeeccH
Confidence 2455 89999999999999999986422 1 26888888652 566789999999999998 344
Q ss_pred ccccccce-eeecCC
Q 003165 458 DQFITKNA-TLTNEK 471 (843)
Q Consensus 458 ~~~~~~tg-Tl~~~~ 471 (843)
++. +.| +|+++.
T Consensus 484 ~di--~rGdvl~~~~ 496 (611)
T 3izq_1 484 EDI--QNGDLAASVD 496 (611)
T ss_dssp TSC--CTTCEEBCST
T ss_pred hhC--cceEEccCCC
Confidence 443 556 888765
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=1.1e-24 Score=246.05 Aligned_cols=133 Identities=27% Similarity=0.361 Sum_probs=96.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCc--CC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGE--RN 94 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (843)
+...||+++||+|||||||+++|+ | ...|...+|+++|+|+......+.+...+. ...+... ..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~-~~~y~~~~~~~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQ-CGTYTTKPRCP 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTT-TCCEESSSBCT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEecccccccccccc-ccccccccccc
Confidence 456899999999999999999994 2 135677889999999988766554421000 0000000 00
Q ss_pred --C----CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCC-ceEEEEECCccc
Q 003165 95 --G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 95 --~----~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~-p~ilviNKiD~~ 163 (843)
+ ..+.++|||||||.+|..++.++++.+|++|+|+|+++|+ .+||.+++..+...++ |+++++||+|+.
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 1 1378999999999999999999999999999999999998 8999999888777776 577899999987
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.92 E-value=8.1e-27 Score=266.54 Aligned_cols=114 Identities=29% Similarity=0.429 Sum_probs=97.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+.++|+++||+|||||||+++|+...- . ....+|+|++.....+.++ +
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~--------------~~e~~GIT~~i~~~~v~~~----------------~ 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--A--------------SGEAGGITQHIGAYHVETE----------------N 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--S--------------BTTBCCCCCCSSCCCCCTT----------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--c--------------cccCCCeeEeEEEEEEEEC----------------C
Confidence 567999999999999999999965321 0 1123678887665444442 5
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.++|||||||.+|...+.++++.+|++|||+|+++|+.+||.++|..+...++|+++++||+|+.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 689999999999999999999999999999999999999999999999999999999999999998
No 30
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=2.9e-25 Score=255.24 Aligned_cols=123 Identities=33% Similarity=0.448 Sum_probs=93.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
..+..||+++||+|||||||+++|+... ....+|..++|+++|+|++.....+.++
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------------- 71 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE--------------- 71 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET---------------
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC---------------
Confidence 3446799999999999999999995422 1245788899999999999888777775
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++.++|||||||.+|...+..+++.+|++|+|+|+++|+.+||.+++..+...++|.++++||+|+.
T Consensus 72 -~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 -NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp -TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred -CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999987
No 31
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.5e-23 Score=236.39 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=93.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc--eEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--VRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
+...||+++||+|||||||+++|+....... .|. .........+..++++.........+. ...
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 71 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK---LGYAETNIGVCESCKKPEAYVTEPSCKSCGSD-----------DEP 71 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS---SEEEEEEEEECTTSCTTTTEESSSCCGGGTCC-----------SCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccc---cCccccceeeccccccccceeccccccccccc-----------ccc
Confidence 3457999999999999999999965321111 111 111111223334555543321111110 001
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccHHHHHHHHHcCCC-ceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt~~~l~~~~~~~~-p~ilviNKiD~~ 163 (843)
.....++|||||||.+|...+..+++.+|++|+|+|+.+|. .+||++++..+...+. |+++++||+|+.
T Consensus 72 ~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 72 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 12378999999999999999999999999999999999998 8999999988877776 678899999987
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=2.2e-25 Score=256.74 Aligned_cols=115 Identities=30% Similarity=0.417 Sum_probs=94.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+...|+++||+|||||||+++|....-. .+...|+|.......+.+. ++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~---------------~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP---------------SG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS---------------CS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC---------------CC
Confidence 3457999999999999999999654311 1123456665544433332 25
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++|||||||.+|...+.++++.+|++|||+|+.+|+.+||.++|..+...++|+++++||+|+.
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999997
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.60 E-value=3e-15 Score=161.55 Aligned_cols=116 Identities=23% Similarity=0.196 Sum_probs=89.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+|+|++|+|||||+++|+.....+....+++ |.......+.+ +
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~t---------------Tr~~i~~i~~~----------------~ 53 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQT---------------TRKRLRGILTE----------------G 53 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCC---------------CCSCEEEEEEE----------------T
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCc---------------eeEEEEEEEEe----------------C
Confidence 4567899999999999999999987554433222221 21111112223 2
Q ss_pred ceEEEEEeCCCCcc--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~ilviNKiD~~ 163 (843)
+..++||||||+.+ |...+..+++.+|++++|+|++++...++..+++++... ++|+++|+||+|+.
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 78999999999987 777888999999999999999999888888888887766 89999999999987
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=8.1e-15 Score=166.73 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=86.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~----------------~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN----------------Q 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET----------------T
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC----------------C
Confidence 5689999999999999999999764432222 12356666655566664 6
Q ss_pred eEEEEEeCCCCcc----------cHHH-HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD----------FSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d----------f~~e-~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+ |... ...+++.+|++++|+|+++|.+.|+..++..+...++|+++++||+|+.
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 7899999999843 3322 3468899999999999999999999988888888899999999999987
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.55 E-value=5.2e-15 Score=145.98 Aligned_cols=115 Identities=27% Similarity=0.416 Sum_probs=89.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-... ...++|.......+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------------- 53 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ----------------EAGGITQHIGAYQVTVN---------------- 53 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS----------------SCCSSSTTCCCCEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC----------------CCCceeEeeeEEEEEeC----------------
Confidence 4567999999999999999999964321100 01122333322334443
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..++||||||+.+|......+++.+|++++|+|++++...++...+..+...++|+++|+||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 6789999999999998877788899999999999999888888888888877889999999999987
No 36
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.54 E-value=3.7e-14 Score=149.74 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+|+|++|+|||||+++|++....+... + .+++|.......+.|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--~------------~~~~t~~~~~~~~~~~---------------- 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--G------------SQTLTKTCSKSQGSWG---------------- 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--T------------SCCCCCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--C------------CCceeeeeEEEEEEeC----------------
Confidence 456799999999999999999998765443321 1 1123444444445554
Q ss_pred ceEEEEEeCCCCcccH-----------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC-----CCceEEEEE-C
Q 003165 97 EYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN-K 159 (843)
Q Consensus 97 ~~~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~-----~~p~ilviN-K 159 (843)
++.++||||||+.++. ..+..+++.+|++|+|+|++. +..++..+++.+.+. +.|+++++| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 7899999999998863 233347788999999999985 777777777766554 678888888 9
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
+|+.
T Consensus 149 ~Dl~ 152 (260)
T 2xtp_A 149 EDLN 152 (260)
T ss_dssp GGGT
T ss_pred cccC
Confidence 9987
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.54 E-value=3.6e-14 Score=153.81 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=89.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+...-.|+|+|++|+|||||+++|+...-.+.....+ .|.......+.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~---------------tT~~~~~~~~~~~--------------- 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG---------------TTRMRVLGVKNIP--------------- 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---------------CCCSCEEEEEEET---------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCC---------------ceeeEEEEEEecC---------------
Confidence 3456789999999999999999997654333222122 2333222222221
Q ss_pred CceEEEEEeCCCCcccH----------HHHHHHhhccCcEEEEecCCCcccccHHHH-HHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~----------~e~~~~l~~~D~ailVvda~~gv~~qt~~~-l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.++||||||+.++. ..+..+++.+|++++|+|++++...++..+ +..+...++|+++|+||+|+.
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 26789999999997654 677889999999999999999999999888 666667789999999999975
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.53 E-value=9.3e-15 Score=157.88 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=84.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+|+||+|+|||||+++|++....+.....+ .|.......+.+ ++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~---------------tTr~~~~gi~~~----------------~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---------------TTRHRIVGIHTE----------------GA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS---------------CCSSCEEEEEEE----------------TT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC---------------cceeeEEEEEEE----------------CC
Confidence 45689999999999999999997653222211111 122111112233 26
Q ss_pred eEEEEEeCCCCc-c--------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~-d--------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++++||||+. . |...+..+++.+|++++|+|+++ ++.+++.+++.+...+.|.++++||+|+.
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 789999999998 3 33345667889999999999988 99999989888877889999999999987
No 39
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=1.1e-13 Score=145.05 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=88.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+.....+.... ..|.|.......+.+. +
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~----------------~ 69 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLG--------------ATSVTRACTTGSRRWD----------------K 69 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET----------------T
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCC--------------CCCccccEEEEEEEEC----------------C
Confidence 457899999999999999999977554432210 1123444434444453 7
Q ss_pred eEEEEEeCCCC--------cccHHHHHHHh----hccCcEEEEecCCCcccccHHHHHHHHHcC------CCceEEEEEC
Q 003165 98 YLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTVNK 159 (843)
Q Consensus 98 ~~i~liDTPGh--------~df~~e~~~~l----~~~D~ailVvda~~gv~~qt~~~l~~~~~~------~~p~ilviNK 159 (843)
..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+++|.||
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 88999999998 66777787777 89999999999975 666666666665542 6789999999
Q ss_pred CccccccccCCHHHHH
Q 003165 160 MDRCFLELQVDGEEAY 175 (843)
Q Consensus 160 iD~~~~~~~~~~~~~~ 175 (843)
+|+. +.+.+++.
T Consensus 149 ~Dl~----~~~~~~~l 160 (247)
T 3lxw_A 149 EDLA----GGSLHDYV 160 (247)
T ss_dssp GGGT----TCCHHHHH
T ss_pred HhcC----CCCHHHHH
Confidence 9998 76655544
No 40
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.50 E-value=1e-13 Score=134.11 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=82.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|+++|+.|+|||||+++|+........ ...+.|.......+.+. +.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 49 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETD----------------RG 49 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeC----------------Cc
Confidence 478999999999999999999754321111 11123333333333343 56
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+ +.......++.+|++++|+|+.++.......+.+.+...+.|+++++||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 899999999987 45566778899999999999999877766666666666789999999999987
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.48 E-value=8.7e-14 Score=159.17 Aligned_cols=115 Identities=23% Similarity=0.324 Sum_probs=89.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. +
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 242 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN----------------Q 242 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET----------------T
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC----------------C
Confidence 46799999999999999999997544333221 1245665555555554 6
Q ss_pred eEEEEEeCCC----------CcccHHH-HHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPG----------h~df~~e-~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++|||||| ++.|... ...+++.+|++|+|+|+++++..|+..++..+...++|+++|+||+|+.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 7899999999 4556544 4468899999999999999999999999999989999999999999987
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.47 E-value=3e-14 Score=160.12 Aligned_cols=115 Identities=22% Similarity=0.200 Sum_probs=87.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...++|+|+|+.|+|||||+++|+..... ..+..+|+|+......+.+. .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~---------------~~~~~~gtT~d~~~~~~~~~---------------~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVS---------------IVSDYAGTTTDPVYKSMELH---------------P 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET---------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCC---------------ccCCCCCeeeeeEEEEEEEC---------------C
Confidence 45789999999999999999999432211 12344577877777666664 1
Q ss_pred ceEEEEEeCCCCcccH-------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~-------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
...++|||||||.+|. ..+..+++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+.
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 3489999999999874 3367788899999999999 788899999999988999999999999987
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.46 E-value=1.3e-13 Score=141.57 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=82.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC-CcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+.... ..... ..|.|.......+. ..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~---------------~~ 76 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK---------------TPGRTQHINYFSVG---------------PA 76 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTC---------------CCCSCCCEEEEEES---------------CT
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecC---------------CCCcccceEEEEec---------------CC
Confidence 3467899999999999999999965431 11111 11233332222221 12
Q ss_pred CceEEEEEeCCCCcc----------cHHHHHHHhhc---cCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCcc
Q 003165 96 NEYLINLIDSPGHVD----------FSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~d----------f~~e~~~~l~~---~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~ 162 (843)
++..++||||||+.+ |...+...++. +|++++|+|+.++.......++..+...++|+++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 357899999999743 23334444444 78899999999998888888888888888999999999997
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 157 ~ 157 (223)
T 4dhe_A 157 L 157 (223)
T ss_dssp S
T ss_pred C
Confidence 6
No 44
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.43 E-value=2.6e-13 Score=142.96 Aligned_cols=111 Identities=21% Similarity=0.242 Sum_probs=81.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|+++|++|+|||||+++|....- .. ....|+|+......+.+. +.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-----------~v-----~~~pg~Tv~~~~~~~~~~----------------~~ 48 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-----------RV-----GNWPGVTVEKKTGEFLLG----------------EH 48 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-----------EE-----EECTTSSSEEEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-----------Cc-----cCCCCceEEEEEEEEEEC----------------Ce
Confidence 46899999999999999999954321 01 111356766666666664 67
Q ss_pred EEEEEeCCCCcccHHH----------HHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e----------~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++||||||+.+|... ....+ +.+|++|+|+|++. ......++.++...++|+++++||+|+.
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 9999999999888641 23344 78999999999987 2334456667778899999999999986
No 45
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.43 E-value=1.1e-12 Score=133.67 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=83.5
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
...+..+|+++|+.|+|||||+++|+...- ... ..|+......+.+. .
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~-----------------~~~~~~~~~~~~~~-------------~ 50 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQY--RDT-----------------QTSITDSSAIYKVN-------------N 50 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCC--CCB-----------------CCCCSCEEEEEECS-------------S
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCc--ccc-----------------cCCcceeeEEEEec-------------C
Confidence 344567999999999999999999966431 110 00111111223332 1
Q ss_pred CCceEEEEEeCCCCcccHH-HHHHHhhccCcEEEEecCCCcccccHHH---HHHHHH------cCCCceEEEEECCcccc
Q 003165 95 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTET---VLRQAL------GERIRPVLTVNKMDRCF 164 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~qt~~---~l~~~~------~~~~p~ilviNKiD~~~ 164 (843)
.+...++||||||+.+|.. .....++.+|++|+|+|++. ...+... .|.... ..++|+++|+||+|+.
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~- 128 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA- 128 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST-
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC-
Confidence 1257899999999999988 56667899999999999986 2222222 232221 2467999999999987
Q ss_pred ccccC-CHHHHHHHHHHHHHH
Q 003165 165 LELQV-DGEEAYQTFSRVVEN 184 (843)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~~~~ 184 (843)
.. ..++..+.+++.+..
T Consensus 129 ---~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 ---MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp ---TCCCHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHH
Confidence 44 445555555554443
No 46
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=3.8e-13 Score=153.10 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=84.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+|+|++|+|||||+++|+.....+... ..|+|.+.....+.|. +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~----------------~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWY----------------GKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEEC----------------CeE
Confidence 579999999999999999996543322221 2256666666666675 678
Q ss_pred EEEEeCCCCcc---------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d---------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+++|||||... +...+..+++.+|++++|+|+..|.+.....+...+...++|+++++||+|+.
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 99999999764 34567788999999999999999988887777777667789999999999975
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.42 E-value=9.4e-13 Score=129.52 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=81.1
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
......+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~-------------- 52 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD-------------- 52 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET--------------
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC--------------
Confidence 34456799999999999999999996532110 000111121112222232
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---Hc----CCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~----~~~p~ilviNKiD~~ 163 (843)
++...+.|+||||+.+|.......++.+|++++|+|++++...+....| ..+ .. .+.|+++++||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 2356899999999999999988999999999999999986544433222 222 11 567999999999986
No 48
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.42 E-value=4.7e-13 Score=134.02 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=82.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||++.|........ .+.. .... .+..-|+........+ ...+++
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~~~~-~~~~----~~~~~t~~~~~~~~~~-----------~~~~~~ 72 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEM-VSLA----TEDERTLFFDFLPLDI-----------GEVKGF 72 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---BCCC-EEEE----CSSCEEEEEEECCSSC-----------CCSSSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc---cccc-cccc----cccccceeeeeccccc-----------ccccCC
Confidence 3467999999999999999976643221110 0100 0000 0001122111100000 013445
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc---------CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~---------~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|......+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 7889999999999999999999999999999999998766665554443322 577999999999987
No 49
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=4.3e-13 Score=134.78 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=80.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+....+|+|+|+.|+|||||+++|+...-.. .++.+ |+......+.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------~~~~~-------t~~~~~~~~~~---------------- 60 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS----------KHITA-------TVGYNVETFEK---------------- 60 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------------CCCC-------CSSEEEEEEEE----------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc----------ccccc-------ccceeEEEEEe----------------
Confidence 4567899999999999999999994322111 01111 22222222333
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHcC-----------CCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~~-----------~~p~ilviNKiD~~ 163 (843)
....++||||||+.+|.......++.+|++|+|+|++++...+.. ..+..+... ++|+++|+||+|+.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 378999999999999998888899999999999999986543333 333444333 78999999999987
No 50
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=134.77 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=82.4
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+...-. .+...+++.......+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~------------- 54 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEIN------------- 54 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET-------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCC----------------CccCCCceeEEEEEEEEEC-------------
Confidence 44567789999999999999999999432110 1111223333333333332
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
+..+.++|+||||+.+|......+++.+|++++|+|++++...+....| ..+. ..+.|+++|+||+|+.
T Consensus 55 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 -GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp -TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred -CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 2347899999999999988888899999999999999986544443323 2222 2357889999999976
No 51
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.42 E-value=3.6e-13 Score=143.23 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=83.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
++++|+++|++|+|||||+++|+.... . . ....|+|+......+.+. +
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~---~--~-----------~~~~~~t~~~~~~~~~~~----------------~ 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ---H--V-----------GNWPGVTVEKKEGIMEYR----------------E 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE---E--E-----------EECTTSSCEEEEEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc---c--c-----------CCCCCeEEEeeEEEEEEC----------------C
Confidence 357999999999999999999944221 0 1 122356776666666664 6
Q ss_pred eEEEEEeCCCCcccHH------HHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCC-CceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSS------EVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~------e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~-~p~ilviNKiD~~ 163 (843)
..++||||||+.+|.. .....+ ..+|++++|+|++.+ .+....+.++...+ +|+++++||+|+.
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 7899999999998765 222333 579999999999885 34555666777777 9999999999965
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.42 E-value=5.4e-13 Score=132.48 Aligned_cols=118 Identities=21% Similarity=0.175 Sum_probs=82.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+........ ...++.......+.+. +
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~ 56 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINVG--------------G 56 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEET--------------T
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEEC--------------C
Confidence 355689999999999999999999754321110 0111222222222222 2
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
+...++|+||||+.+|.......++.+|++|+|+|+++....+....| ......+.|+++++||+|+.
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 346899999999999999999999999999999999986544443333 22224578999999999985
No 53
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.41 E-value=7.4e-13 Score=140.07 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|++|+|||||+++|++........ ..+.|.......+.+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~---------------- 82 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTMG---------------- 82 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEEC----------------
Confidence 456899999999999999999997644322111 1233444444455554
Q ss_pred ceEEEEEeCCCCcccHHHHHHH---hh------ccCcEEEEecCCC-cccccHHHHHHHHHc---CC--CceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAA---LR------ITDGALVVVDCIE-GVCVQTETVLRQALG---ER--IRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~---l~------~~D~ailVvda~~-gv~~qt~~~l~~~~~---~~--~p~ilviNKiD 161 (843)
+..++||||||+.+|....... +. .+|++++|+|... .........++.+.. .+ .|+++++||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 6799999999998875332222 22 7899999987764 233333344444432 21 38889999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 163 l~ 164 (262)
T 3def_A 163 FS 164 (262)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.41 E-value=4.9e-13 Score=134.03 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=83.6
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
+....+...+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~----------- 61 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELD----------- 61 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCCCSSEEEEEEEEEET-----------
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEEC-----------
Confidence 33344567899999999999999999997532111 111122333333333332
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
+..+.++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 62 ---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 ---GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp ---TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred ---CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2357899999999999999999999999999999999985443333222 222 23478999999999986
No 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.41 E-value=1.9e-12 Score=127.28 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=81.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+........ .. ..|.+.... .+.+ ++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~~~--~~~~--------------~~ 61 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PH------------TIGVEFGTR--IIEV--------------SG 61 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--TT------------SCCCCEEEE--EEEE--------------TT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CC------------ccceEEEEE--EEEE--------------CC
Confidence 345789999999999999999999764321110 00 011222211 1222 12
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
....++|+||||+.+|.......++.+|++++|+|++++...+....| ..+ ...+.|+++++||+|+.
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 357899999999999999999999999999999999986544433332 222 23578899999999985
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.40 E-value=7.7e-13 Score=130.52 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=70.3
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+...-.... ...++.......+.+. ++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~-------------~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQY----------------KATIGADFLTKEVTVD-------------GD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-------------------CCCSCEEEEECCS-------------SS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCccc----------------CCccceEEEEEEEEEc-------------CC
Confidence 456789999999999999999999763211000 0011111111112121 12
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH-------cCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~-------~~~~p~ilviNKiD~~ 163 (843)
....++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..++|+++++||+|+.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 357899999999999998888899999999999999886544433333 2221 1578999999999985
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.40 E-value=6.8e-13 Score=130.80 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
.+.+..+|+++|+.|+|||||+++|+...-. ....++ .+.+.. ..+.+ +
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t------------~~~~~~---~~~~~--------------~ 53 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPT------------IEDSYT---KICSV--------------D 53 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTT------------CCEEEE---EEEEE--------------T
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCC------------cCceEE---EEEEE--------------C
Confidence 3456789999999999999999999764211 100110 011111 11222 2
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+....++|+||||+.+|.......++.+|++++|+|+++.-..... .+++.....++|+++++||+|+.
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999988888899999999999999875332222 22233334578999999999986
No 58
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.40 E-value=8e-13 Score=133.78 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=80.1
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
......+|+|+|+.|+|||||+++|+...-.... ...++.......+.+ +
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~ 53 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMV--------------D 53 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEES--------------S
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEE--------------C
Confidence 3456789999999999999999999764321100 011122221222222 2
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHH---c----CCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---G----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~---~----~~~p~ilviNKiD~~ 163 (843)
+....++||||||+.+|.......++.+|++|+|+|++++...+....|. .+. . .++|+++|+||+|+.
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 34578999999999999888888899999999999998865444333332 111 1 467999999999986
No 59
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.40 E-value=2.2e-12 Score=128.15 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=83.3
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccccccc
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKS 88 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
++++...+....+|+++|+.|+|||||+++|.... . ..+ ....|.+ ...+.+.
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~--~----------~~~---~~t~g~~----~~~~~~~-------- 58 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED--I----------SHI---TPTQGFN----IKSVQSQ-------- 58 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSC--C----------EEE---EEETTEE----EEEEEET--------
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCC--C----------Ccc---cCcCCeE----EEEEEEC--------
Confidence 44455555667899999999999999999993321 0 000 0111222 1223332
Q ss_pred ccCcCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH----cCCCceEEEEECCccc
Q 003165 89 YKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+..++++||||+..|......+++.+|++++|+|+++.-..+.. ..+..+. ..+.|+++++||+|+.
T Consensus 59 --------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 59 --------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp --------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 67899999999999999889999999999999999875433322 2223332 2467999999999987
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=131.87 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=80.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-. .+....++.......+.+. ++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 73 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR--------------GK 73 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC--------------Ce
Confidence 34678999999999999999999432110 0001111222222223332 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HH---HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~---~~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|++++...+....|. .+ ...+.|+++|+||+|+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 578999999999999999999999999999999999876555443332 22 23478999999999986
No 61
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.39 E-value=1.9e-12 Score=125.65 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=77.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+...-. ++.+ |+......+.+ ++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~------------~~~~-------t~~~~~~~~~~----------------~~~~~ 46 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV------------TTIP-------TIGFNVETVEY----------------KNISF 46 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS------------CCCC-------CSSCCEEEEEC----------------SSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC------------cccC-------cCceeEEEEEE----------------CCEEE
Confidence 7999999999999999999654311 0111 22211222333 36889
Q ss_pred EEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..... .+.|+++++||+|+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 9999999999998888999999999999999876333222 22333322 378999999999987
No 62
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.39 E-value=1.6e-12 Score=128.76 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=79.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+...-. . ++.+ |+.... ..+.+ ++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 63 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV--D---------DYDP-------TIEDSYLKHTEI--------------DN 63 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--S---------CCCT-------TCCEEEEEEEEE--------------TT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--C---------CCCC-------CccceeEEEEEe--------------CC
Confidence 45679999999999999999999743211 1 0000 111111 11111 22
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-----HHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-----ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-----~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
....++++||||+.+|.......++.+|++++|+|++++...+. ..+.+.....++|+++|+||+|+.
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 35678889999999999888999999999999999998633322 222233345678999999999986
No 63
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=1.2e-12 Score=130.86 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=79.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...-. . ++. -|+......+.+ ++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~---------~~~-------~t~~~~~~~~~~----------------~~ 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN--E---------DMI-------PTVGFNMRKITK----------------GN 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--C---------SCC-------CCCSEEEEEEEE----------------TT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC--C---------ccC-------CCCceeEEEEEe----------------CC
Confidence 4578999999999999999999653211 0 000 122222222333 37
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+|.......++.+|++|+|+|+++.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 8999999999999998889999999999999999875333322 22333322 578999999999987
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.39 E-value=7.7e-13 Score=129.26 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=79.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- .. +. -|+......+.+. +
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~----------~~-------~t~~~~~~~~~~~----------------~ 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--VT----------TI-------PTIGFNVETVTYK----------------N 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--CC----------CC-------CCSSEEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--CC----------cC-------CcCccceEEEEEC----------------C
Confidence 457899999999999999999965321 10 01 1222222233443 6
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|.......++.+|++++|+|+++.-..... ..+..... .+.|+++++||+|+.
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 8899999999999988888899999999999999886433222 22233322 578999999999987
No 65
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.39 E-value=3.8e-12 Score=123.52 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=75.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- .....++ .+.+. ...+.+ +++.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~ 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVL--------------DGEE 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTT------------CCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCC------------cceEE---EEEEEE--------------CCEE
Confidence 357899999999999999999976431 1100110 01111 111222 2235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++.-..... .+.......++|+++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 6899999999999999999999999999999999875432222 12222223478999999999986
No 66
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.38 E-value=2.8e-13 Score=154.09 Aligned_cols=113 Identities=26% Similarity=0.311 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|++|+|||||+++|+...-.+. +...|.|.+.....+.|. +..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~----------------~~~ 52 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWL----------------NYD 52 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------SSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEEC----------------Cce
Confidence 5899999999999999999943222111 112355655444444343 678
Q ss_pred EEEEeCCCCc--------ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~--------df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||+. .|...+..+++.+|++|+|+|+.+|.+.....+++.+...++|+++++||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 9999999986 566778889999999999999999999888888887778889999999999976
No 67
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.38 E-value=3e-12 Score=126.87 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=79.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
......+|+++|+.|+|||||+++|+...- ......+ .+.+. ...+.+ +
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~ 62 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVL--------------D 62 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTT------------CCEEE---EEEEEE--------------T
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCc------------cceEE---EEEEEE--------------C
Confidence 344578999999999999999999975431 1100110 00111 111222 1
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.++|+||||+.+|.......++.+|++++|+|+.+.-..+.. .+...+...++|+++|+||+|+.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999999999999999999999999875332222 22222223478999999999986
No 68
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.38 E-value=1.1e-12 Score=129.10 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=80.1
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.++.+..+|+++|+.|+|||||+++|+...-... ....+++......+.+.
T Consensus 9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~------------- 59 (179)
T 2y8e_A 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----------------YQATIGIDFLSKTMYLE------------- 59 (179)
T ss_dssp ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEEET-------------
T ss_pred cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeEEEEEEEEEC-------------
Confidence 3344457899999999999999999975321110 01112222222222232
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
+....+.|+||||+.+|.......++.+|++++|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 60 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 -DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp -TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred -CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2356899999999999999889999999999999999875433322222 222 23578899999999986
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=132.60 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=77.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.. . .. ...|.+.... .+.+ ++.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~--~~-----------~t~~~~~~~~--~~~~--------------~~~ 75 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-N--IS-----------ATLGVDFQMK--TLIV--------------DGE 75 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEE--EEEE--------------TTE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCc-c--CC-----------CCccceeEEE--EEEE--------------CCE
Confidence 456799999999999999999996532110 0 00 0011122111 2222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 57899999999999999999999999999999999886554443333 2222 2478999999999986
No 70
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.37 E-value=9e-13 Score=131.09 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=79.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... ... +.+ |+......+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~----------~~~-------t~~~~~~~~~~~---------------- 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT----------ISP-------TLGFNIKTLEHR---------------- 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS----------CCC-------CSSEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc----------ccc-------cCccceEEEEEC----------------
Confidence 456799999999999999999995432 111 111 222122233333
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..... .+.|+++++||+|+.
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 68999999999999988888889999999999999886443332 23333333 468999999999987
No 71
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.37 E-value=2.2e-12 Score=128.92 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=79.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+......... ..|.|.... +...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------------~~~~t~~~~---~~~~---------------- 66 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK---------------TPGKTRSIN---FYLV---------------- 66 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS---------------SCCCCCCEE---EEEE----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccC---------------CCCCccCeE---EEEE----------------
Confidence 345789999999999999999997654111111 112232211 1111
Q ss_pred ceEEEEEeCCC----------CcccHHHHHHHhhc---cCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPG----------HVDFSSEVTAALRI---TDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPG----------h~df~~e~~~~l~~---~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+.+||||| +..|...+...++. +|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 34688999999 33344444444444 599999999999888888888888888899999999999986
No 72
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.37 E-value=1.3e-12 Score=127.30 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=79.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-... .+...|.+.... .+.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~--------------~~~~ 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF--------------QESTIGAAFLTQ--TVCL--------------DDTT 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEE--EEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEE--EEEE--------------CCEE
Confidence 457899999999999999999965321100 011112222222 1222 1236
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 7899999999999999999999999999999999886543333222 3332 2367888899999986
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.37 E-value=2e-12 Score=128.97 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-. .. ... ..|.+... ...+.+.. .. ......+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~~~-----------t~~~~~~~-~~~~~~~~--~~---~~~~~~~~ 68 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN--SK-FIT-----------TVGIDFRE-KRVVYRAN--GP---DGAVGRGQ 68 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--CS-CCC-----------CCSEEEEE-EEEEECTT--SC---CCSSCCCE
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC--cC-ccc-----------ccceeeee-EEEEEecC--Cc---ccccccCc
Confidence 45679999999999999999999653211 00 000 00111110 01111110 00 00000112
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHH-HHHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~-l~~~~~----~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|++++...+.... +..+.. .+.|+++|+||+|+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5789999999999999999999999999999999988655444322 233322 578999999999986
No 74
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.37 E-value=1.1e-12 Score=129.43 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=80.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~ 59 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEF----------------QESTIGAAFFSQTLAVN--------------DA 59 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTT----------------SCCCSCCSEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCc----------------CCCCceeEEEEEEEEEC--------------CE
Confidence 4457899999999999999999975321110 00111111111122221 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++....+.. ..+..+.. .+.|+++++||+|+.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 57899999999999999899999999999999999886543332 23333332 367899999999985
No 75
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.37 E-value=1e-12 Score=139.83 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.... .. ....|+|+......+.+. +..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~-~v---------------~~~~g~t~~~~~~~~~~~----------------~~~ 51 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ-RV---------------GNWAGVTVERKEGQFSTT----------------DHQ 51 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE-EE---------------EECTTSSSEEEEEEEECS----------------SCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc-cc---------------CCCCCeeEEEEEEEEEeC----------------CCc
Confidence 5899999999999999999954321 10 112356666555555553 678
Q ss_pred EEEEeCCCCcccHH---------HHH---HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSS---------EVT---AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~---------e~~---~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||+.+|.. .+. ...+.+|++|+|+|++.. .....++.++...++|+++|+||+|+.
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccch
Confidence 99999999988762 111 223689999999999872 334455566677799999999999976
No 76
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.37 E-value=1.9e-12 Score=127.40 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=78.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-.. +....++.......+.+. ++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~-------------~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK----------------QYKQTIGLDFFLRRITLP-------------GNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH----------------HHHHTTTSSEEEEEEEET-------------TTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC----------------CCCCceeEEEEEEEEEeC-------------CCC
Confidence 345789999999999999999996532110 000111111111223332 112
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc-----CCCc-eEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~-----~~~p-~ilviNKiD~~ 163 (843)
...++++||||+.+|.......++.+|++++|+|+++....+....| ..+.. .+.| +++++||+|+.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 47899999999999998889999999999999999886544333333 22222 2567 67899999986
No 77
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.7e-12 Score=127.98 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.... ....++.......+.+ ++.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~t~~~~~~~~~~~~--------------~~~ 58 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---------------FISTVGIDFRNKVLDV--------------DGV 58 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC---------------CCCCCSCEEEEEEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC---------------cCCceeeEEEEEEEEE--------------CCE
Confidence 45679999999999999999999764321111 0011122111111222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++++||||+.+|.......++.+|++++|+|++++...+....| ..+. ..+.|+++++||+|+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 56899999999999998888999999999999999886543332222 2222 2578999999999986
No 78
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.37 E-value=3.4e-12 Score=129.15 Aligned_cols=115 Identities=19% Similarity=0.259 Sum_probs=78.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEe--eeeEEEEEeecccccccccCcCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK--STGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
+...+|+++|+.|+|||||+++|+...- .. + ..-|+. .....+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~--------------~--~~~t~~~~~~~~~~~~~-------------- 74 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF--SE--------------R--QGSTIGVDFTMKTLEIQ-------------- 74 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------CEEEEEEEET--------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC--CC--------------C--CCCCcceEEEEEEEEEC--------------
Confidence 3467999999999999999999965321 00 0 011221 111222222
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
++...++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 2357899999999999999999999999999999999875443332222 2332 2568899999999986
No 79
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=1.9e-12 Score=126.11 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=79.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.... ....|.+... ..+.+ ++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~--~~~~~--------------~~~~~ 52 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--------------EPTIGAAFLT--QRVTI--------------NEHTV 52 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEE--EEEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEE--EEEEE--------------CCEEE
Confidence 358999999999999999999754311100 0001222221 12222 12356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++....+....| ..+. ..+.|+++++||+|+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 899999999999999999999999999999999986444333322 2222 2467889999999986
No 80
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=1.8e-12 Score=129.27 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-. . +.+ |+......+.++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~----------~~~-------t~~~~~~~~~~~---------------- 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV--H----------TSP-------TIGSNVEEIVIN---------------- 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE--E----------EEC-------CSCSSCEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c----------CcC-------CCccceEEEEEC----------------
Confidence 34578999999999999999999642211 0 000 221122233343
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|++++-..+.. ..+..+.. .+.|+++|+||+|+.
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 68999999999999988888899999999999999986433332 23333333 578999999999987
No 81
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.37 E-value=1.3e-12 Score=131.93 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=80.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-... +. ...|++.... .+.+ ++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~~---~t~~~~~~~~--~~~~--------------~~~~ 56 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-----------FV---STVGIDFKVK--TIYR--------------NDKR 56 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-----------CC---CCCSEEEEEE--EEEE--------------TTEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------cC---CccceeEEEE--EEEE--------------CCeE
Confidence 467999999999999999999964321100 00 0112222222 1222 2236
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .+.|+++|+||+|+.
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999886443333223 33322 478999999999986
No 82
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.37 E-value=3.1e-12 Score=128.51 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=53.0
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH-cCCCceEEEEECCcc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~-~~~~p~ilviNKiD~ 162 (843)
...++||||||+.+|.......++.+|++++|+|++++...+....| ..+. ..+.|+++|+||+|.
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 37899999999999999999999999999999999987554443333 2332 356889999999993
No 83
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.37 E-value=3e-12 Score=124.08 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=77.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.... ..+ .+ +.. ...+.+ ++...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~------------~~-~~~--~~~~~~--------------~~~~~ 51 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DPT------------IE-DFY--RKEIEV--------------DSSPS 51 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTT------------CC-EEE--EEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--CCC------------cc-eeE--EEEEEE--------------CCEEE
Confidence 358999999999999999999753211000 000 00 000 111222 22356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|+++....+.. .+++.+...+.|+++++||+|+.
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 799999999999999999999999999999999875432222 22222223578999999999986
No 84
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.4e-12 Score=132.11 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=81.6
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.|...+...+|+++|+.|+|||||+++|+...-... .+ ..++++.....+.++
T Consensus 19 ~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~---~~-------------~t~~~~~~~~~~~~~----------- 71 (201)
T 2ew1_A 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG---QG-------------ATIGVDFMIKTVEIN----------- 71 (201)
T ss_dssp ---CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT---CC-------------CCCSEEEEEEEEEET-----------
T ss_pred CccccccceEEEEECcCCCCHHHHHHHHHhCCCCCC---CC-------------CccceeEEEEEEEEC-----------
Confidence 344455678999999999999999999965321100 00 011222212222232
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
+....++|+||||+.+|......+++.+|++|+|+|+++....+...-| ..+ ...+.|+++|+||+|+.
T Consensus 72 ---~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 ---GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp ---TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred ---CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2356899999999999999899999999999999999876443332222 222 23467889999999986
No 85
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.36 E-value=1.2e-12 Score=131.22 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=78.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|....- .. + ..|+......+.++ +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~--~~----------~-------~~t~~~~~~~~~~~----------------~ 66 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL--AT----------L-------QPTWHPTSEELAIG----------------N 66 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC--CC----------C-------CCCCSCEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--Cc----------c-------ccCCCCCeEEEEEC----------------C
Confidence 456899999999999999999965321 10 0 01222222344443 5
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH----cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|.......++.+|++++|+|++++-..+.. ..+..+. ..+.|+++++||+|+.
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 8999999999999988777888999999999999986543332 2223332 2578999999999987
No 86
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.36 E-value=3.4e-13 Score=154.29 Aligned_cols=115 Identities=25% Similarity=0.301 Sum_probs=84.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+|+|++|+|||||+++|+...-.+ .+...|+|.......+.| .+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~----------------~~ 70 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEW----------------LN 70 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTT----------------CS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEE----------------CC
Confidence 45789999999999999999994321111 111235666554444333 36
Q ss_pred eEEEEEeCCC--------CcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPG--------h~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+++||||| +..|...+..+++.+|++|+|+|+.+|+......+++.+.+.++|+++|+||+|+.
T Consensus 71 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 71 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred ceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 7899999999 56677788899999999999999999999999999988888899999999999976
No 87
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=2.3e-12 Score=126.99 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|............ |.|.......+.+. +..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~~----------------~~~ 53 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIA---------------GTTRDVLREHIHID----------------GMP 53 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSST---------------TCCCSCEEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCC---------------CceeceeeEEEEEC----------------CeE
Confidence 47999999999999999999654322111111 23332222333343 567
Q ss_pred EEEEeCCCCcccHH--------HHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc---CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~--------e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
+.++||||..++.. .+...++.+|++++|+|+++....+....+..+.. .++|+++|+||+|+.
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 89999999876421 12346789999999999998776555544444332 368999999999975
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=129.38 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=78.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+........ ...|+......+.++ +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~----------------~ 66 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS----------------S 66 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS----------------S
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC----------------C
Confidence 4578999999999999999999443211110 011222222233332 5
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH-c-----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-G-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~-~-----~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+. . .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 7899999999999998888899999999999999875332222 2223332 2 478999999999987
No 89
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.36 E-value=2.3e-12 Score=139.83 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=55.0
Q ss_pred ceEEEEEeCCCCcc-------------cHHHHHHHhhccCcEEEEecC-CCcccccH-HHHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l~~~D~ailVvda-~~gv~~qt-~~~l~~~~~~~~p~ilviNKiD 161 (843)
...++||||||+.+ |...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|.++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 56899999999864 566778899999999999997 56666555 3677777778899999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 90
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.36 E-value=2.5e-12 Score=124.90 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=77.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+... ....... |+.... ...+. .+++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~----------------t~~~~~-~~~~~------------~~~~~~ 51 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI--FVEKYDP----------------TIEDSY-RKQVE------------VDCQQC 51 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC--CCCSCCC----------------CSEEEE-EEEEE------------SSSCEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCC----------------CccceE-EEEEE------------ECCEEE
Confidence 3589999999999999999997532 1110000 111110 01111 133467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++....+.. .+.+.....+.|+++++||+|+.
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 899999999999999999999999999999999874332221 22222223578999999999986
No 91
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.36 E-value=2.7e-12 Score=128.50 Aligned_cols=114 Identities=14% Similarity=0.213 Sum_probs=78.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-. .. .. ...|.|..... +.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~--~~-----------~~~~~t~~~~~--~~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNL-AR--TS-----------SKPGKTQTLNF--YII----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEE--EEE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cc--cC-----------CCCCceeeEEE--EEE-----------------
Confidence 35789999999999999999999653210 00 00 01122332211 111
Q ss_pred ceEEEEEeCCC----------CcccHHHHHHHhhcc---CcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPG----------h~df~~e~~~~l~~~---D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..+++||||| +..|...+...++.+ |++++|+|++++...+...+++.+...+.|+++++||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 23689999999 445555555666666 99999999999888877777777777889999999999986
No 92
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=2e-12 Score=136.35 Aligned_cols=112 Identities=21% Similarity=0.349 Sum_probs=81.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|++|+|||||+++|.... ... ....|+|+......+.+. +
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~-----------~~~-----~~~pg~tv~~~~~~~~~~----------------~ 51 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK-----------QYV-----ANWPGVTVEKKEGVFTYK----------------G 51 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC-----------EEE-----EECTTSCCEEEEEEEEET----------------T
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC-----------Ccc-----cCCCCceEEEEEEEEEEC----------------C
Confidence 45789999999999999999994321 111 112367777666666553 6
Q ss_pred eEEEEEeCCCCcccHH-----HH-HHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~-----e~-~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+|.. .+ ...+ ..+|++++|+|++..- .....+.++...++|+++++||+|+.
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 8999999999988753 12 2333 4799999999998732 23345567777899999999999975
No 93
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.35 E-value=1.1e-12 Score=129.91 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-. .+....++.......+.++ +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 55 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELD--------------GK 55 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEEC--------------CE
Confidence 45689999999999999999999532110 0111112222222223332 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|+++....+... .+..+.. .+.|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 578999999999999888888899999999999998854433322 2233322 467999999999986
No 94
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=129.46 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=81.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+...+|+|+|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~ 71 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTR--TVML--------------GT 71 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEE--EEEE--------------TT
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEE--EEEE--------------CC
Confidence 345689999999999999999999764321111 00012222211 1111 12
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHHHHc---CCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
....++|+||||+.+|.......++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 3678999999999999988899999999999999998865433322 2333332 367899999999986
No 95
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.35 E-value=2e-12 Score=126.01 Aligned_cols=116 Identities=21% Similarity=0.171 Sum_probs=78.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-... ....++.......+.+ ++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~~~ 51 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS----------------FITTIGIDFKIKTVDI--------------NGKK 51 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEES--------------SSCE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCC----------------CCCccceeEEEEEEEE--------------CCEE
Confidence 356899999999999999999975321100 0011121111122222 2345
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
..+.|+||||+.+|.......++.+|++++|+|+++....+....| ..+. ..+.|+++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 7899999999999988888999999999999999876443332222 2222 2478999999999984
No 96
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.35 E-value=9.2e-13 Score=128.15 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=78.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...- ... .. ..++.......+.+ ++.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~-~~-------------~t~~~~~~~~~~~~--------------~~~ 52 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIF--TKD-YK-------------KTIGVDFLERQIQV--------------NDE 52 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCC--CCC-SS-------------CCCSSSEEEEEEEE--------------TTE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCC--CCC-CC-------------CceEEEEEEEEEEE--------------CCE
Confidence 3457899999999999999999965321 100 00 00111111112222 123
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc--CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
...+.|+||||+.+|.......++.+|++++|+|+++....+....| ..+.. .+.|+++++||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 57899999999999988888899999999999999885433332222 22222 478999999999986
No 97
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.7e-12 Score=125.15 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=76.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-. .. +.+ ..+.+... .+.. +....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~---------~~~---t~~~~~~~---~~~~--------------~~~~~ 51 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ES---------YIP---TVEDTYRQ---VISC--------------DKSIC 51 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SS---------CCC---CSCEEEEE---EEEE--------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CC---------CCC---CccccEEE---EEEE--------------CCEEE
Confidence 458999999999999999999652211 00 000 00111110 1111 22356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHHHHHHc-----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l~~~~~-----~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++...... ...+..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 89999999999999999999999999999999987543222 233333322 368999999999986
No 98
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=3.3e-12 Score=127.71 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=80.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++.
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~~ 62 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--------------AATIGVDFKVK--TISV--------------DGN 62 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEE--------------TTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--------------CCccceEEEEE--EEEE--------------CCe
Confidence 34579999999999999999999653211000 00112222222 2222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~----~~~p~ilviNKiD~~ 163 (843)
...+.||||||+.+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 67899999999999998889999999999999999886544443333 33332 367889999999985
No 99
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.9e-12 Score=129.71 Aligned_cols=117 Identities=16% Similarity=0.105 Sum_probs=81.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.... ....|.+..... +.+ ++.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~~--~~~--------------~~~ 70 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNI--------------SPTIGASFMTKT--VPC--------------GNE 70 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTC--------------CCCSSEEEEEEE--EEC--------------SSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCc--------------CCCcceeEEEEE--EEe--------------CCE
Confidence 34679999999999999999999754311000 001122322221 111 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 67899999999999999999999999999999999886544433333 22222 368899999999986
No 100
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.35 E-value=1.8e-12 Score=129.50 Aligned_cols=117 Identities=24% Similarity=0.258 Sum_probs=78.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-.... ....|.+.. ...+.+. +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~--~~~~~~~--------------~~ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--------------EATIGVDFR--ERAVDID--------------GE 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--------------CCCCSCCEE--EEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCCcceEEE--EEEEEEC--------------CE
Confidence 35689999999999999999999653211000 000111111 1222222 23
Q ss_pred ceEEEEEeCCCCcccH-HHHHHHhhccCcEEEEecCCCcccccHHHHH-----HHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~-~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-----~~~~~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|. ......++.+|++|+|+|+++....+...-| +.+...+.|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5789999999999998 6677889999999999999875433332222 22224578999999999986
No 101
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.35 E-value=2.8e-12 Score=129.45 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|.... . ..+. -|+......+.++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~--~----------~~~~-------~t~~~~~~~~~~~---------------- 67 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR--L----------GQHV-------PTLHPTSEELTIA---------------- 67 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC--C----------CccC-------CCCCceeEEEEEC----------------
Confidence 345689999999999999999993211 1 0111 1222222344443
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+. ..++|+++|+||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 58999999999999887777889999999999999876433322 2223332 2578999999999987
No 102
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.35 E-value=1.3e-12 Score=130.37 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ +++
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~~ 69 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVK--TVYR--------------HDK 69 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEE--EEEE--------------TTE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEE--EEEE--------------CCe
Confidence 34679999999999999999999654311100 00112233222 1222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|+++....+.. ..+..+.. .+.|+++|+||+|+.
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 67899999999999988888899999999999999875443333 22233333 478999999999986
No 103
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.35 E-value=2.9e-12 Score=124.87 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=80.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~~~~~~~~~--~~~~--------------~~~~ 54 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNI--------------NPTIGASFMTK--TVQY--------------QNEL 54 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEE--------------TTEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCC--------------CCceeEEEEEE--EEEE--------------CCeE
Confidence 3568999999999999999999654311000 01112233222 1222 1235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
..+.++||||+.+|.......++.+|++++|+|+++....+....| ..+. ..+.|+++++||+|+.
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 7899999999999998889999999999999999986554443333 3332 3456788899999986
No 104
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=3.6e-12 Score=144.95 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=83.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+|+|++|+|||||+++|+.....+..... |+|.+.....+.+. +
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~----------------g 227 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID----------------G 227 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET----------------T
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC----------------C
Confidence 3568999999999999999999665433222222 34555544555564 6
Q ss_pred eEEEEEeCCCCcccHH------------HHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~------------e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.+|||||...+.. .+..+++.+|++++|+|+.+|...+...++..+...++|+++++||+|+.
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 6899999999854332 23567889999999999999988888777777778899999999999986
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.34 E-value=3.2e-12 Score=128.27 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... . ..+.+ |+......+.+ +
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~----------~~~~~-------t~~~~~~~~~~----------------~ 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--I----------VTTIP-------TIGFNVETVEY----------------K 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--C----------EEEEE-------ETTEEEEEEEE----------------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--c----------cccCC-------cCceeEEEEEE----------------C
Confidence 345789999999999999999993211 1 01111 22222223333 2
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+..++|+||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+.. .+.|+++|+||+|+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 68999999999999988888899999999999999876433322 22333322 378999999999986
No 106
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.34 E-value=7.7e-12 Score=132.81 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=79.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|+...-...... .+.|.......+.+ +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~ 85 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPF---------------QSEGPRPVMVSRSR----------------A 85 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS---------------SCCCSSCEEEEEEE----------------T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCC---------------CCcceeeEEEEEee----------------C
Confidence 3567999999999999999999975432211111 12233222233333 3
Q ss_pred ceEEEEEeCCCCcccH---HHHHHHh------hccCcEEEEecCCC-cccccHHHHHHHHHcC-C----CceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~---~e~~~~l------~~~D~ailVvda~~-gv~~qt~~~l~~~~~~-~----~p~ilviNKiD 161 (843)
+..++||||||+.+|. ......+ +.+|++++|+|++. .........++.+... + .|+++++||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 6789999999998764 2222222 36899999988754 3433344444444322 2 58899999999
Q ss_pred cccccccCCHHHHHHHH
Q 003165 162 RCFLELQVDGEEAYQTF 178 (843)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (843)
+.- .-+.+.+++.+..
T Consensus 166 l~~-~~~~~~~~~~~~~ 181 (270)
T 1h65_A 166 FSP-PDGLPYDEFFSKR 181 (270)
T ss_dssp CCC-GGGCCHHHHHHHH
T ss_pred cCC-cCCCCHHHHHHHH
Confidence 751 1123455554433
No 107
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.34 E-value=3e-12 Score=124.90 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=72.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.... ...++.......+.+ ++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~~ 53 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKH----------------ITTLGASFLTKKLNI--------------GGK 53 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSC----------------CCCCSCEEEEEEEES--------------SSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCC----------------CCccceEEEEEEEEE--------------CCE
Confidence 34578999999999999999999754211000 001111111112222 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
...+.++||||+.+|.......++.+|++++|+|+++....+....| ..+ ...+.|+++++||+|+.
T Consensus 54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 67899999999999988888889999999999999886543333222 222 23578899999999986
No 108
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=2.7e-12 Score=128.92 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=78.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+...-. . .+.+ ..+.+.. ..+.+ ++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~---------~~~~---t~~~~~~---~~~~~--------------~~ 53 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--D---------TYIP---TIEDTYR---QVISC--------------DK 53 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCC--C---------TTSC---CCCEEEE---EEEEE--------------TT
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCC--C---------cccC---cccccee---EEEEE--------------CC
Confidence 345578999999999999999999763211 0 0000 0011111 01111 22
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc-----CCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~-----~~~p~ilviNKiD~~ 163 (843)
....+.|+||||+.+|.......++.+|++++|+|+++....+.. ..+..+.. .+.|+++|+||+|+.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 366899999999999999999999999999999999874332222 22222221 367999999999986
No 109
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.34 E-value=2.4e-12 Score=129.51 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=77.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.++..+|+++|..|+|||||+++|...... .. ..+.+.........+. ++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~--~~---------------~~~~~~~~~~~~~~~~-------------~~ 66 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSP--NE---------------TLFLESTNKIYKDDIS-------------NS 66 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCG--GG---------------GGGCCCCCSCEEEEEC-------------CT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCC--cc---------------eeeeccccceeeeecc-------------CC
Confidence 345679999999999999999987432111 00 0111111122222221 13
Q ss_pred CceEEEEEeCCCCcccHHHH---HHHhhccCcEEEEecCCCcccccHHHHHHHH-----HcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~---~~~l~~~D~ailVvda~~gv~~qt~~~l~~~-----~~~~~p~ilviNKiD~~ 163 (843)
+...++||||||+.+|.... ...++.+|++|+|+|+++........+...+ ...+.|+++|+||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 46789999999999998777 7899999999999999986322222222222 23478999999999986
No 110
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.33 E-value=1.6e-12 Score=131.65 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=80.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-... ....++.......+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 55 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND----------------YISTIGVDFKIKTVELD--------------GK 55 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT----------------CCCSSCCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCcccceeEEEEEEEC--------------CE
Confidence 4567999999999999999999965321100 00111222212222232 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..+.|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 56899999999999988888899999999999999986544443333 2222 2467899999999986
No 111
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=3e-12 Score=130.11 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=78.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.. . ....++.......+.+. +.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~---------------~~~~~~~~~~~~~~~~~--------------~~ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-S---------------FITTIGIDFKIKTVDIN--------------GK 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-S---------------SSCCCSCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-c---------------cCCcccceEEEEEEEEC--------------CE
Confidence 346799999999999999999997532110 0 00111222222223332 22
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...+.||||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..+.|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 47899999999999988888999999999999999876443332222 2222 2368899999999984
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=124.52 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=79.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+|+|+.|+|||||+++|+...- .....++ .+.+. ...+.+. +.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~~--------------~~ 60 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVLD--------------GE 60 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTT------------CCEEE---EEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCc------------cceEE---EEEEEEC--------------CE
Confidence 4567999999999999999999975431 1100110 01111 1122221 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH----HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~----~~~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++++|+|+++.-.......| ..+ ...++|+++++||+|+.
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 56899999999999999999999999999999999875433222222 222 23478999999999986
No 113
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=1.3e-12 Score=129.34 Aligned_cols=112 Identities=20% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... . ..+. -|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~-----------~-~~~~-------~t~~~~~~~~~~~---------------- 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGE-----------V-VTTK-------PTIGFNVETLSYK---------------- 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSE-----------E-EEEC-------SSTTCCEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC-----------c-CccC-------CcCccceEEEEEC----------------
Confidence 456799999999999999999993211 0 0000 1222222233343
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+. ..+.|+++++||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 68899999999999988888889999999999999876443322 2333333 2567899999999987
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.33 E-value=2.8e-12 Score=131.02 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=80.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...- .. +....+++......+.+...... ....+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~ 82 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--------------KFITTVGIDFREKRVVYNAQGPN----GSSGKAF 82 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--------------EEEEEEEEEEEEEEEEEEC-----------CCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--------------CCCCceeEEEEEEEEEECCcccc----ccccCce
Confidence 4567999999999999999999954221 00 00001111111122223210000 0000111
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHH-HHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~-~~~----~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 5789999999999999999999999999999999988654444333322 211 467899999999986
No 115
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.33 E-value=3.3e-12 Score=126.33 Aligned_cols=115 Identities=21% Similarity=0.191 Sum_probs=75.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- ...... ..+.+. ...+.+ ++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~------------t~~~~~---~~~~~~--------------~~~~ 53 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDP------------TIENTF---TKLITV--------------NGQE 53 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT------------TCCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCC------------CccccE---EEEEEE--------------CCEE
Confidence 457999999999999999999974331 110011 011111 111122 2235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.++|+||||+.+|.......++.+|++++|+|+++.-..+.. .+++.....++|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 7889999999999977777888999999999999874333222 22223234578999999999985
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.32 E-value=5.4e-12 Score=123.24 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=73.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|....-.. + ...|+|+......+.+. +.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~-----~-----------~~~~~t~~~~~~~~~~~----------------~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYI-----G-----------NWPGVTVEKKEGEFEYN----------------GE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSC-----C----------------CCCCCEEEEEET----------------TE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeec-----c-----------CCCCcceeeeEEEEEEC----------------Cc
Confidence 4689999999999999999995421110 1 11234444333344443 57
Q ss_pred EEEEEeCCCCcccH------HHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|. .-...+++ .+|++++|+|++.- .+....+..+.+.++|++++.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 89999999998874 12233443 79999999999762 122233445556789999999999975
No 117
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.32 E-value=7.3e-12 Score=121.05 Aligned_cols=113 Identities=20% Similarity=0.257 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+...-. ....... +... ...+.+ ++..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~------------~~~~---~~~~~~--------------~~~~~~ 52 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTI------------EDSY---RKQVVI--------------DGETCL 52 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTC------------CEEE---EEEEEE--------------TTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCcc------------ceEE---EEEEEE--------------CCEEEE
Confidence 58999999999999999999754211 1000100 0000 111122 223577
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHH----cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~----~~~~p~ilviNKiD~~ 163 (843)
++++||||+.+|.......++.+|++++|+|+++....+.. ..+..+. ..++|+++++||+|+.
T Consensus 53 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 89999999999999999999999999999999875433222 2222222 2378999999999987
No 118
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=6.3e-12 Score=125.07 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=77.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+.... .. +...++|+......+.+. +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-----------~~-----~~~~~~t~~~~~~~~~~~----------------~ 53 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-----------YI-----GNWPGVTVEKKEGEFEYN----------------G 53 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-----------EE-----EECTTSCCEEEEEEEEET----------------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-----------cc-----cCCCCeeccceEEEEEeC----------------C
Confidence 457899999999999999999954211 00 111245555444445453 6
Q ss_pred eEEEEEeCCCCcccH------HHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+|. ......++ .+|++++|+|+... ......+..+...+.|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 889999999999884 22333443 49999999998751 223344455666788999999999985
No 119
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.32 E-value=5.1e-12 Score=125.51 Aligned_cols=114 Identities=21% Similarity=0.219 Sum_probs=74.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-. ....++ +.......+.+ ++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t---------------~~~~~~~~~~~--------------~~~~~ 52 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPT---------------IEDSYRKQVVI--------------DGETC 52 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTT---------------CCEEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC---------------chheEEEEEEE--------------CCcEE
Confidence 468999999999999999999753311 100110 11111111112 22356
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-H----HHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-R----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~----~~~~~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|+.+....+....| . .....+.|+++++||+|+.
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 789999999999999999999999999999999875433332222 2 2223578999999999986
No 120
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.32 E-value=2.6e-12 Score=128.63 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.... ....|.+... ..+.+ +++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~--~~~~~--------------~~~ 68 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGA--RMVNI--------------DGK 68 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEEE--EEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCcccceeEE--EEEEE--------------CCE
Confidence 34679999999999999999999763321110 0001112211 12222 123
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++....+... .+..+. ..+.|+++|+||+|+.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 578999999999999888889999999999999998854443332 222332 2478899999999986
No 121
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.31 E-value=3.5e-12 Score=127.87 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=78.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...- ......+ .+.+.. ..+.+ ++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~--------------~~~ 69 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPT------------VFENFS---HVMKY--------------KNE 69 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCC------------SEEEEE---EEEEE--------------TTE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCe------------eeeeeE---EEEEE--------------CCE
Confidence 4457899999999999999999966431 1100110 011111 11112 233
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHH-HHH--cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~-~~~--~~~~p~ilviNKiD~~ 163 (843)
.+.++|+||||+.+|......+++.+|++++|+|+++....... ..|. .+. ..++|+++|+||+|+.
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 67789999999999998888899999999999999986444332 2232 222 2368999999999986
No 122
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=2.9e-12 Score=128.28 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=80.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+|+|+.|+|||||+++|+...-.... . ...|++.... .+.+ ++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~--------~t~~~~~~~~--~~~~--------------~~~ 70 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF------V--------STVGIDFKVK--TVYR--------------HEK 70 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE------E--------EEETTTEEEE--EEEE--------------TTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc------C--------CCeeeEEEEE--EEEE--------------CCE
Confidence 45679999999999999999999764311100 0 0001222211 1112 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~---~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 78899999999999999999999999999999999875433332 22233332 578999999999985
No 123
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.31 E-value=4.4e-12 Score=124.32 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=69.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+...-.... ...|.+.... .+.++ +..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~--~~~~~--------------~~~ 51 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYER--TLTVD--------------GED 51 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEE--EEEET--------------TEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEE--EEEEC--------------CEE
Confidence 4568999999999999999999543211110 0122333222 12222 235
Q ss_pred eEEEEEeCCCCcc--cHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD--FSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d--f~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
..++++||||+.+ +.......++.+|++++|+|+++.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 6899999999988 444455677889999999999875433332 22333333 278999999999986
No 124
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.31 E-value=2.4e-12 Score=127.63 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=79.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- .. +. -|+......+.++ +
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-------~~----------~t~~~~~~~~~~~----------------~ 64 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--VH-------TS----------PTIGSNVEEIVIN----------------N 64 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--EE-------EE----------CCSSSSCEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--Cc-------cC----------CcCceeeEEEEEC----------------C
Confidence 457899999999999999999965321 00 00 0111111233333 6
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 8999999999999988888899999999999999986443322 23333332 578999999999987
No 125
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.30 E-value=2.1e-12 Score=132.05 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=79.4
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcC
Q 003165 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGER 93 (843)
Q Consensus 14 ~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+... ... .+. .|+........+.. .
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~------~~~----------~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGR--FEK------NYN----------ATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCS--TTC------EEE----------TTTTEEEEEEEEEB-----------T
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCC--CCC------CCC----------CccceeeEEEEEEe-----------C
Confidence 344556799999999999999999994321 000 000 01111111112210 1
Q ss_pred CCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHcCCCceEEEEECCccc
Q 003165 94 NGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~~~~p~ilviNKiD~~ 163 (843)
++....++||||||+.+|.......++.+|++|+|+|++++...+....| ......+.|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 12237899999999999988888889999999999999987665554322 23334568999999999986
No 126
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.30 E-value=2.7e-12 Score=129.67 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=59.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEe--eeeEEEEEeecccccccccCcCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIK--STGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~--~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
...+|+++|+.|+|||||+++|+........ ++. -|+. .....+.+. +
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------~~~-------~t~~~~~~~~~~~~~--------------~ 68 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLK---------DYA-------MTSGVEVVVAPVTIP--------------D 68 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECT--------------T
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccC---------CCC-------CccceEEEEEEEEEC--------------C
Confidence 3468999999999999999999654111111 000 0221 111222222 2
Q ss_pred C--ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc------CCCceEEEEECCccc
Q 003165 96 N--EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~--~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~------~~~p~ilviNKiD~~ 163 (843)
. ...++|+||||+.+|.......++.+|++|+|+|++++...+....| ..+.. .++|+++|+||+|+.
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 2 57899999999999998888899999999999999886543333333 33322 578999999999986
No 127
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.30 E-value=4.2e-12 Score=137.44 Aligned_cols=115 Identities=16% Similarity=0.212 Sum_probs=81.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+|+++|.+|+|||||+++|+......... ..|.|+......+.+. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~---------------~~~~Ti~~~~~~~~~~---------------~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR---------------RLGATIDVEHSHLRFL---------------GNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG---------------GCCCCCSEEEEEEEET---------------TTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccc---------------CcCCccceEEEEEEeC---------------Cce
Confidence 3589999999999999999996543222211 2234555554444442 268
Q ss_pred EEEEEeCCCCccc-----HHHHHHHhhccCcEEEEecCCCcccccHHHHHH----HHH--cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df-----~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~----~~~--~~~~p~ilviNKiD~~ 163 (843)
.++||||||+.+| .......++.+|++|+|+|+++....+....|. .+. ..++|+++++||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 9999999999998 445666778999999999999875544443332 211 2378999999999987
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=1.3e-11 Score=126.10 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.... .... -|+... + .
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--------~~~~-------~~~~~~-----~----------------~ 53 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------VSQE-------PLSAAD-----Y----------------D 53 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--------CCSS-------CEEETT-----G----------------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--------eecC-------ceEEEE-----e----------------e
Confidence 45679999999999999999999764311100 0000 011100 0 2
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhc----cCcEEEEecCC-C--cccccHHHHHHHHH------cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E--GVCVQTETVLRQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~----~D~ailVvda~-~--gv~~qt~~~l~~~~------~~~~p~ilviNKiD~~ 163 (843)
...++++||||+.+|.......++. +|++|+|+|++ . ........+..... ..++|+++++||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 5678999999999998888888877 89999999998 3 22222222212111 2578999999999987
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.30 E-value=3e-12 Score=131.40 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=82.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhc-CCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
.....+|+++|+.|+|||||+++|+... ..... ...|.|.......+ +
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~---------------~t~~~~~~~~~~~~----------------~ 60 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV---------------ATLGVEVHPLVFHT----------------N 60 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEE---------------TTTTEEEEEEEEEE----------------T
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC---------------CccceeEEEEEEEE----------------C
Confidence 3456799999999999999999965322 11100 11133443322222 2
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH---cCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~---~~~~p~ilviNKiD~~ 163 (843)
++...++||||||+.+|.......++.+|++++|+|++++...+....|.... ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 23678999999999999888888999999999999999866555443343222 2378999999999986
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.30 E-value=3.4e-12 Score=145.75 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|++|+|||||+++|+.....+... ..|+|.+.....+.+. ++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~----------------g~~ 282 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD----------------KTM 282 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC----------------CeE
Confidence 469999999999999999996543322221 1244555444445554 788
Q ss_pred EEEEeCCCCcccHHHHH--------HHhhccCcEEEEecCCCcccc----cHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~--------~~l~~~D~ailVvda~~gv~~----qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||+.++...+. .+++.+|++++|+|++++... ....++..+ .++|+++|+||+|+.
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSC
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCC
Confidence 99999999988765443 357889999999999998776 333443333 268999999999987
No 131
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.29 E-value=1.5e-12 Score=129.95 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=77.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
++..+|+++|+.|+|||||+++|... .. .++.+ |+......+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~--~~----------~~~~~-------t~~~~~~~~~~~---------------- 64 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG--DV----------VTTVP-------TVGVNLETLQYK---------------- 64 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS--CC----------EEECS-------STTCCEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC--CC----------CCcCC-------CCceEEEEEEEC----------------
Confidence 34578999999999999999999321 11 01111 221122233333
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..... .+.|+++|+||+|+.
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 68999999999999887777788999999999999876433322 22333333 368999999999987
No 132
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.29 E-value=2.4e-12 Score=130.10 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+|+|+.|+|||||+++|+...-.... ...++.......+.+ +++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~~ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS----------------NHTIGVEFGSRVVNV--------------GGK 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccC----------------CCcccceeEEEEEEE--------------CCe
Confidence 45679999999999999999999643211100 011111111112222 123
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHH---HcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~---~~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+ ...++|+++|+||+|+.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 57899999999998887788899999999999999986544433332 222 23478899999999985
No 133
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.29 E-value=8.2e-12 Score=130.01 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=73.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....++|+++|++|+|||||+++|+........ ....++|.......+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------- 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG--------------TAAKSITKKCEKRSSSWK--------------- 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET---------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC--------------CCCCceeeeEEEEEEEeC---------------
Confidence 346789999999999999999999653321111 111234554444455554
Q ss_pred CceEEEEEeCCCCccc-----------HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHH-----cCCCceEEEEEC
Q 003165 96 NEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNK 159 (843)
Q Consensus 96 ~~~~i~liDTPGh~df-----------~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~-----~~~~p~ilviNK 159 (843)
+..++||||||+.+. ...+..+.+.+|++|+|+|+.. ........+..+. ....|+++|+||
T Consensus 77 -~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 77 -ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp -TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred -CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 679999999997653 2333344456799999999874 3334443333332 234589999999
Q ss_pred Cccc
Q 003165 160 MDRC 163 (843)
Q Consensus 160 iD~~ 163 (843)
+|+.
T Consensus 155 ~D~~ 158 (239)
T 3lxx_A 155 KDDL 158 (239)
T ss_dssp GGGC
T ss_pred CccC
Confidence 9986
No 134
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.29 E-value=2.4e-12 Score=125.21 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=61.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+........ ...|.|.. ..+.+ ++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~---~~~~~--------------~~~~~ 49 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA---------------EAAGHTYD---RSIVV--------------DGEEA 49 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC---------------CccccceE---EEEEE--------------CCEEE
Confidence 358999999999999999999421110000 01122221 11112 23467
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 899999999999998888999999999999999875333222 22233332 468999999999986
No 135
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.29 E-value=1.7e-11 Score=122.26 Aligned_cols=114 Identities=20% Similarity=0.225 Sum_probs=67.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...- .....++ .+... ...+.+ ++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~~ 69 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPT------------IEDSY---RKQVVI--------------DGETC 69 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTT------------CCEEE---EEEEEE--------------TTEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCc------------cceEE---EEEEEE--------------CCEEE
Confidence 46899999999999999999975321 1100110 00011 111222 22357
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH----cCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~----~~~~p~ilviNKiD~~ 163 (843)
.++||||||+.+|.......++.+|++++|+|+.+....+....| ..+. ..++|+++|+||+|+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 799999999999999899999999999999999886543333222 2222 2478999999999986
No 136
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.29 E-value=6.9e-12 Score=122.27 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=67.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.+|+++|+.|+|||||+++|+......... ...+.......+.+ ++...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------~~~~~ 51 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMV--------------DKEEV 51 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TTEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEE--------------CCeEE
Confidence 4689999999999999999995432211110 00011111112222 23367
Q ss_pred EEEEEeCCCCcccHH-HHHHHhhccCcEEEEecCCCcccccHH-HHHHHHHc----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
.+.++||||+.+|.. .....++.+|++++|+|+++.-..+.. ..+..+.. .++|+++++||+|+.
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 899999999999876 444568889999999999874332222 22222222 378999999999986
No 137
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.28 E-value=8.2e-12 Score=124.14 Aligned_cols=115 Identities=13% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+...-. . ++.+ |+.... ..+.+ ++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 52 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--E---------NYVP-------TVFENYTASFEI--------------DT 52 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--S---------SCCC-------CSEEEEEEEEEC--------------SS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--C---------CCCC-------ccceeEEEEEEE--------------CC
Confidence 44578999999999999999999663211 0 0000 111110 11111 23
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHH--cCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
....+.|+||||+.+|.......++.+|++++|+|+++..+.+.. ..| ..+. ..+.|+++++||+|+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 467899999999999987777888999999999999875443332 223 2222 2478999999999986
No 138
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.28 E-value=2.4e-12 Score=130.02 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-.... .. |+.... ...+. .++.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~----------------t~~~~~-~~~~~------------~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DP----------------TVENTY-SKIVT------------LGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CC----------------CSEEEE-EEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CC----------------ccceEE-EEEEE------------ECCE
Confidence 35679999999999999999999753321100 00 111111 01111 1234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH----cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~----~~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 67899999999999988888899999999999999875443333322 2222 2368999999999986
No 139
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.28 E-value=5.6e-12 Score=127.82 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=78.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-.-.. .+ .+.......+.+ ++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY--IP---------------TVFDNYSANVMV--------------DGK 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C--CC---------------CSEEEEEEEEEC--------------C-C
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc--CC---------------eecceeEEEEEE--------------CCE
Confidence 34568999999999999999999753221000 11 111111111111 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHc--CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
.+.++|+||||+.+|......+++.+|++++|+|++++...+... .| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 677889999999999988888999999999999999866554442 23 23322 378999999999987
No 140
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.28 E-value=2.6e-12 Score=127.25 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=77.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+... .......+ . +.+. ...+.+ ++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t--~----------~~~~---~~~~~~--------------~~~~~ 53 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPT--V----------FDNY---SANVMV--------------DGKPV 53 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCC--S----------CCEE---EEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCc--c----------ccee---EEEEEE--------------CCEEE
Confidence 4689999999999999999996532 11100000 0 0011 111112 22367
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHc--CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|++++...+... .| ..+.. .+.|+++|+||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 8889999999999888888899999999999998865444432 23 23322 278999999999987
No 141
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.28 E-value=1.4e-11 Score=135.38 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=42.6
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.++||||||+.++...+ .+.+|++++|+|+..|...+.... ...++|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 36789999999998876653 589999999999987654332211 11246889999999976
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.27 E-value=3.1e-11 Score=128.42 Aligned_cols=122 Identities=16% Similarity=0.253 Sum_probs=74.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..||+++|++|+|||||+++|+......... .+ .......++++......+.+ ++...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~--------------~~~~~ 65 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKE--------------GGVQL 65 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC----------------CCE
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEec--------------CCeEE
Confidence 4689999999999999999995432221110 00 00011222333332222222 12346
Q ss_pred EEEEEeCCCCccc-------HHHH-------HHHhhc-------------cCcEEEEecCC-CcccccHHHHHHHHHcCC
Q 003165 99 LINLIDSPGHVDF-------SSEV-------TAALRI-------------TDGALVVVDCI-EGVCVQTETVLRQALGER 150 (843)
Q Consensus 99 ~i~liDTPGh~df-------~~e~-------~~~l~~-------------~D~ailVvda~-~gv~~qt~~~l~~~~~~~ 150 (843)
.++||||||+.++ ..-+ ...++. +|+++++|+.. .+.......+++.+.. +
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~ 144 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 144 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-T
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-c
Confidence 8999999998543 2111 333433 67888888655 4888888888888766 8
Q ss_pred CceEEEEECCccc
Q 003165 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNKiD~~ 163 (843)
+|+++|+||+|+.
T Consensus 145 ~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 145 VNIIPLIAKADTL 157 (274)
T ss_dssp SCEEEEESSGGGS
T ss_pred CCEEEEEeccCCC
Confidence 9999999999975
No 143
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.27 E-value=5.2e-13 Score=134.75 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=77.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+... ...+....++.......+.+. ++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~--------------~~ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELD--------------GK 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEEC--------------CE
Confidence 457899999999999999999983211 011111222332222333332 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc---CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~---~~~p~ilviNKiD~~ 163 (843)
.+.++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 57899999999999988888889999999999999986554443333 33332 267899999999986
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.27 E-value=3.3e-12 Score=145.34 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|++|+|||||+++|+.....+.....| +|.+.....+.++ +..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~----------------g~~ 273 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG----------------GIP 273 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET----------------TEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC----------------CEE
Confidence 469999999999999999998875544332233 2333222233343 678
Q ss_pred EEEEeCCCCcccHHHHHH--------HhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~--------~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||+.++...+.. .++.+|++++|+|++++...+...+++.+. ..|+++|+||+|+.
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~ 343 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLV 343 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSS
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCC
Confidence 999999999877654333 567899999999999988888877777654 36999999999987
No 145
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.27 E-value=8.8e-12 Score=124.85 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=78.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+... .......+ . +.+. ...+.+ +++.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t--~----------~~~~---~~~~~~--------------~~~~ 65 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPT--V----------FDHY---AVSVTV--------------GGKQ 65 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCS--S----------CCCE---EEEEES--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCc--c----------ccee---EEEEEE--------------CCEE
Confidence 46799999999999999999997642 11100010 0 0011 011112 2345
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHcC--CCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~~--~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+... ++|+++|+||+|+.
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 78999999999999888888899999999999998764433322 22 333332 78999999999986
No 146
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.1e-12 Score=131.53 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+|+|+.|+|||||+++|+...-.... ...++.......+.+. ++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 60 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE--------------GK 60 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------TE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------CE
Confidence 45679999999999999999999654321110 0011111111222222 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 57899999999999988888889999999999999986554443323 2222 2367899999999986
No 147
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.26 E-value=8.6e-12 Score=124.73 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.... ... ..+++. .+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~--------~~~-----~~~~~~-------~~----------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------VSQ-----EPLSAA-------DY----------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC----------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc--------ccC-----CCceee-------ee----------------c
Confidence 34569999999999999999999654311100 000 000111 01 2
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhc----cCcEEEEecCCCcccc-cH-HHHHHHHH-------cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCIEGVCV-QT-ETVLRQAL-------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~----~D~ailVvda~~gv~~-qt-~~~l~~~~-------~~~~p~ilviNKiD~~ 163 (843)
...+++|||||+.+|.......++. +|++|+|+|++..... .. ...+..+. ..+.|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 5678999999999887666666655 8999999999822211 11 11122221 1478999999999987
Q ss_pred cccccC-CHHHHHHHHHHHHHH
Q 003165 164 FLELQV-DGEEAYQTFSRVVEN 184 (843)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~ 184 (843)
+. +.+++.+.+.+.+..
T Consensus 170 ----~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 170 ----TARPPSKIKDALESEIQK 187 (193)
T ss_dssp ----TCCCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHH
Confidence 43 455666555555444
No 148
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.26 E-value=2.9e-11 Score=124.77 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-. ..+ ..+.|.......+.+ +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~----------~~~------~~~~t~~~~~~~~~~----------------~ 74 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD----------VQS------YSFTTKNLYVGHFDH----------------K 74 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE----------EEC------C-----CEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc----------cCC------CCCcceeeeeeeeec----------------C
Confidence 45689999999999999999999442110 000 112233322222223 2
Q ss_pred ceEEEEEeCCCCcc------c---HHHHHHHhhccCcEEEEecCCCcccccH---HHHHHHHHcC--CCceEEEEECCcc
Q 003165 97 EYLINLIDSPGHVD------F---SSEVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGE--RIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~d------f---~~e~~~~l~~~D~ailVvda~~gv~~qt---~~~l~~~~~~--~~p~ilviNKiD~ 162 (843)
+..+.||||||+.+ . ...+....+.+|++|+|+|+++....+. ...+..+... ++|+++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 57899999999943 1 1223344678899999999998655332 2344455444 7899999999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 155 ~ 155 (228)
T 2qu8_A 155 C 155 (228)
T ss_dssp C
T ss_pred C
Confidence 6
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.26 E-value=9.6e-12 Score=126.53 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=76.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...+|+++|+.|+|||||+++|+...- ...... |+.... ..+.+ ++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~ 55 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIP----------------TVFDNFSANVAV--------------DGQ 55 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCC----------------SSCCCEEEEEEC--------------SSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCC----------------ccceeEEEEEEE--------------CCE
Confidence 456899999999999999999975321 110001 111000 11111 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHc--CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|......+++.+|++|+|+|+++....+... .| ..+.. .++|+++|+||+|+.
T Consensus 56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 678999999999999888888999999999999998754433322 23 23222 378999999999986
No 150
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.25 E-value=1.5e-11 Score=125.01 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|..|+|||||+++|+...-. . ++.+ |+.... ...+. .++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~---------~~~~-------t~~~~~-~~~~~------------~~~ 73 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFP--E---------NYVP-------TVFENY-TASFE------------IDT 73 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--S---------SCCC-------CSEEEE-EEEEE------------SSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCC--C---------CcCC-------ccceeE-EEEEE------------ECC
Confidence 345679999999999999999999653211 0 0000 111111 11111 123
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHHc--CCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
....++||||||+.+|.......++.+|++|+|+|+++....... ..| ..+.. .+.|+++|+||+|+.
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 467899999999999987777788999999999999875433332 223 22222 468899999999986
No 151
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=126.74 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=62.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+..+|+++|..|+|||||+++|+... ... ++.+ |+... ...+.+ +++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~~ 80 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA--FPE---------SYTP-------TVFERYMVNLQV--------------KGK 80 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------CC-------CCCEEEEEEEEE--------------TTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCC---------CCCC-------ccceeEEEEEEE--------------CCE
Confidence 45699999999999999999996421 110 0000 11000 111122 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHH--cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++++|+|+++....+... .| ..+. ..++|+++|+||+|+.
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 568999999999999988888999999999999998754433322 23 2222 2478999999999987
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=6.4e-11 Score=118.91 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=75.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.... ..+ .+.+. ...+.+ ++..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t------------~~~~~---~~~~~~--------------~~~~ 75 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DPT------------LESTY---RHQATI--------------DDEV 75 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CTT------------CCEEE---EEEEEE--------------TTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCC------------CCceE---EEEEEE--------------CCEE
Confidence 4568999999999999999999764211100 000 01111 011122 2236
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-----HHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-----~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+ .......++.+|++++|+|+++.-..... .+.......++|+++++||+|+.
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 7899999999998 66778888999999999999874322211 12222223578999999999986
No 153
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=7.6e-12 Score=127.00 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=76.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.... .. . .+.+.. ..+.+ +++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~--t----------~~~~~~---~~~~~--------------~~~~ 72 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VP--T----------VFENYV---ADIEV--------------DGKQ 72 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEE--------------TTEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CC--c----------ccceEE---EEEEE--------------CCEE
Confidence 3568999999999999999999763321100 00 0 011111 11112 2235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHHc--CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
..+.|+||||+.+|......+++.+|++++|+|+++.-..+.. ..| ..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 7899999999999988888889999999999999875333322 222 23322 378999999999987
No 154
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.4e-11 Score=134.59 Aligned_cols=109 Identities=19% Similarity=0.146 Sum_probs=72.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|++|+|||||+++|+... . ....+ |+......+.+. +..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~--~----------~~~~p-------T~~~~~~~~~~~----------------~~~ 210 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE--I----------VTTIP-------TIGFNVETVEYK----------------NIS 210 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC--C----------EEEEE-------ETTEEEEEEEET----------------TEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCC--C----------CCccc-------ccceEEEEEecC----------------cEE
Confidence 489999999999999999993211 1 11011 333333334443 789
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHHHHH-Hc---CCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l~~~-~~---~~~p~ilviNKiD~~ 163 (843)
++|+||||+.+|......+++.+|++|+|+|+++....+.. ..+... .. .++|+++|+||+|+.
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 99999999999999899999999999999999764332222 222222 22 378899999999987
No 155
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.24 E-value=7.9e-12 Score=142.83 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|.+|+|||||+++|+.....+.....| +|.+.....+.+. +..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g---------------TT~d~~~~~i~~~----------------g~~ 292 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---------------TTRDVISEEIVIR----------------GIL 292 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---------------CSSCSCCEEEEET----------------TEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC---------------eeeeeEEEEEecC----------------CeE
Confidence 589999999999999999998765433332233 3444333444443 678
Q ss_pred EEEEeCCCCc-ccH--------HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 100 INLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~-df~--------~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++||||||+. ++. ..+...++.+|++|+|+|++++...+...+++.+ .++|+++|+||+|+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 9999999998 653 3456788999999999999998777777777665 478999999999986
No 156
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.24 E-value=7.1e-12 Score=126.62 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|....-.... .. .. +.+.. ..+.+ +++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~--t~----------~~~~~---~~~~~--------------~~~~ 72 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VP--TV----------FENYI---ADIEV--------------DGKQ 72 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CC--SS----------CCCCE---EEEEE--------------TTEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCccc--CC--cc----------cceEE---EEEEE--------------CCEE
Confidence 3568999999999999999999753321100 00 00 00110 11222 2235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHH-HHH-HHHHc--CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~-~~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
..+.|+||||+.+|......+++.+|++++|+|+++.-..+.. ..| ..+.. .+.|+++|+||+|+.
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 6899999999999988888889999999999999874333322 222 23322 378999999999987
No 157
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.24 E-value=8.6e-12 Score=125.67 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=75.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeee-eEEEEEeecccccccccCcCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKST-GISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+... ....... |+... ...+.+ ++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 65 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIP----------------TAFDNFSAVVSV--------------DG 65 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------C----------------CSSEEEEEEEEE--------------TT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------cccceeEEEEEE--------------CC
Confidence 456789999999999999999996432 1110000 11100 111222 22
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHH--cCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
....+.|+||||+.+|.......++.+|++++|+|+++.-..+... .| ..+. ..++|+++|+||+|+.
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 3568889999999999877777889999999999998754443332 22 2222 2378999999999987
No 158
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.23 E-value=3.5e-11 Score=120.06 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|+...- ......+ -+.+.. ..+.+ +++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~--------------~~~ 67 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPN------------LEDTYS---SEETV--------------DHQ 67 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTT------------CCEEEE---EEEEE--------------TTE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCC------------ccceee---EEEEE--------------CCE
Confidence 3457899999999999999999976431 1100000 011110 11111 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc------CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~------~~~p~ilviNKiD~~ 163 (843)
...+.|+||||+.+|.. +...++.+|++++|+|+++.-..+....| ..+.. .++|+++++||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 67899999999998865 46788999999999999875433332222 22222 578999999999986
No 159
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.23 E-value=2.5e-11 Score=141.31 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCcc-----------cHHHHHHHhhccCcEEEEecCCC-cccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d-----------f~~e~~~~l~~~D~ailVvda~~-gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|+++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 4689999999986 77788889999999999999988 677788888888777778999999999976
No 160
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.23 E-value=2.3e-12 Score=127.33 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=72.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...- .....+ |+.... ...+. .++..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~----------------t~~~~~-~~~~~------------~~~~~ 55 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP----------------TVFDNF-SANVV------------VNGAT 55 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C--------------------------C-BCCCC-----------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC----------------eeeeeE-EEEEE------------ECCEE
Confidence 346899999999999999999975321 110001 110000 00000 12235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHc--CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++++||+|+.
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 67889999999999888888999999999999998754443332 23 22222 378999999999986
No 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.22 E-value=2e-11 Score=124.74 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=77.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeee-EEEEEeecccccccccCcCCCC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTG-ISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...+|+++|..|+|||||+++|+...-... +.+ |+.... ..+.+ +++
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~-----------~~~-------t~~~~~~~~~~~--------------~~~ 73 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPET-----------YVP-------TVFENYTACLET--------------EEQ 73 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSS-----------CCC-------CSEEEEEEEEEC----------------C
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------cCC-------eeeeeEEEEEEE--------------CCE
Confidence 456899999999999999999965321100 000 111110 11111 234
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccH-HHHH-HHHH--cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt-~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++...... ...| ..+. ..++|+++|+||+|+.
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 6789999999999998888888999999999999998654443 2233 2332 2378999999999986
No 162
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.22 E-value=1e-11 Score=131.82 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=75.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|....-. .+ .. .|+|+...... + +. +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~------~~-----pg~tv~~~~~~--~--------------~~-~~ 49 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG------NW-----PGVTVERKSGL--V--------------KK-NK 49 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC------SS-----SCCCCSCEEEE--C--------------TT-CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc------CC-----CCCcEEEEEEE--E--------------ec-CC
Confidence 468999999999999999999542211 11 11 15555433222 1 12 45
Q ss_pred EEEEEeCCCCcccH------HHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+++|||||+.+|. .-....++ .+|++++|+|++.. ......+.++...++|+++++||+|+.
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 78999999998885 22334454 59999999999862 222334456667899999999999985
No 163
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.21 E-value=4.7e-11 Score=128.36 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCc-------------ccHHHHHHHhhccCcEE-EEecCCCcccccHH-HHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~-------------df~~e~~~~l~~~D~ai-lVvda~~gv~~qt~-~~l~~~~~~~~p~ilviNKiD 161 (843)
...++||||||+. .+...+..+++.+|.++ +|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999964 34556777888888877 69999998887775 466777677889999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 86
No 164
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.21 E-value=7.4e-11 Score=120.85 Aligned_cols=119 Identities=19% Similarity=0.165 Sum_probs=77.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCC
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERN 94 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
+|.+-.+|+|+|..|+|||||+.+++... ... ++. -|+.......... .+
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~--f~~---------~~~-------~Tig~d~~~k~~~------------~~ 58 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDS--FDN---------TYQ-------ATIGIDFLSKTMY------------LE 58 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE------------CS
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCC--CCC---------CcC-------CccceEEEEEEEE------------ec
Confidence 34444689999999999999999996421 110 001 1332222222222 23
Q ss_pred CCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HH---HHcCCCceEEEEECCccc
Q 003165 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ---ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~---~~~~~~p~ilviNKiD~~ 163 (843)
+....++||||+|..+|.......++.+|++++|+|.+..-+.+...-| .. ....++|++||.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 4567899999999999999999999999999999999875443333222 22 224567899999999986
No 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.20 E-value=8.7e-11 Score=116.97 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-. . .+.+. +... ...+.+ ++.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~---------~~~~t----~~~~---~~~~~~--------------~~~ 65 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--Q---------EESPE----GGRF---KKEIVV--------------DGQ 65 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--C---------CCCTT----CEEE---EEEEEE--------------TTE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--C---------CcCCC----cceE---EEEEEE--------------CCE
Confidence 34568999999999999999999653211 0 00010 0011 112222 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~----~~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|. .++.+|++++|+|+++....+....| ..+.. .++|++++.||+|+.
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5788999999999987 78889999999999986555553333 33333 357899999999984
No 166
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.18 E-value=1.8e-10 Score=113.27 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=71.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|..|+|||||+++|+...-.. +.+ .-|.+. ...+.+ +++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------~~~---t~~~~~---~~~~~~--------------~~~~ 53 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV------------LEK---TESEQY---KKEMLV--------------DGQT 53 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC------------CSS---CSSSEE---EEEEEE--------------TTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC------------cCC---CcceeE---EEEEEE--------------CCEE
Confidence 35689999999999999999996532110 000 001111 011122 2235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHHHc---CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~~~---~~~p~ilviNKiD~~ 163 (843)
..++|+||||+.+ ...++.+|++++|+|+++....+....| ..... .++|++++.||+|+.
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 7899999999987 3577889999999999886544444332 12222 367899999999984
No 167
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.78 E-value=3e-12 Score=129.51 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=78.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... ....... .+.......+.+ ++.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP---------------TVFDNYSANVMV--------------DGK 76 (204)
Confidence 345689999999999999999995422 1110000 000000011111 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHcC--CCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~~--~~p~ilviNKiD~~ 163 (843)
...++||||||+.+|.......++.+|++++|+|++++...+... .| ..+... ++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 567889999999999988889999999999999998865544432 33 222222 68999999999986
No 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=116.92 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|......... ..+++.......+.+ +++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~~ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMV--------------DKE 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEE--------------TTE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEE--------------CCE
Confidence 45679999999999999999999432221110 001111111112222 223
Q ss_pred ceEEEEEeCCCCcccHH-HHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~----~~~p~ilviNKiD~~ 163 (843)
...+.++||||+.+|.. .....++.+|++|+|+|+++........-| ..+.. .++|++++.||+|+.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 56889999999998865 445668899999999999874332222222 22222 478999999999986
No 169
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.15 E-value=7.5e-11 Score=117.20 Aligned_cols=108 Identities=22% Similarity=0.238 Sum_probs=67.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+...-. .+...|+|.... .+.+ . .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~t~~~~--~~~~-----------------~-~ 45 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR----------------RGKRPGVTRKII--EIEW-----------------K-N 45 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS----------------SSSSTTCTTSCE--EEEE-----------------T-T
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc----------------cCCCCCccceeE--EEec-----------------C-C
Confidence 58999999999999999999643210 011123343222 1212 1 6
Q ss_pred EEEEeCCCC-----------cccHHHHHHHhhc-c---CcEEEEecCCCc-----------ccccHHHHHHHHHcCCCce
Q 003165 100 INLIDSPGH-----------VDFSSEVTAALRI-T---DGALVVVDCIEG-----------VCVQTETVLRQALGERIRP 153 (843)
Q Consensus 100 i~liDTPGh-----------~df~~e~~~~l~~-~---D~ailVvda~~g-----------v~~qt~~~l~~~~~~~~p~ 153 (843)
++++||||+ ..|.......++. + ++++.|+|+... ...++..++..+...++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 899999994 4455555555554 4 555566665431 1222334555556678999
Q ss_pred EEEEECCccc
Q 003165 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNKiD~~ 163 (843)
++++||+|+.
T Consensus 126 ilv~nK~Dl~ 135 (190)
T 2cxx_A 126 IVAVNKLDKI 135 (190)
T ss_dssp EEEEECGGGC
T ss_pred EEEeehHhcc
Confidence 9999999987
No 170
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.13 E-value=9.4e-11 Score=135.57 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=81.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|.+|+|||||+++|+..... . ..+ |+......+.+ ++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~----------~~~-------T~~~~~~~~~~----------------~~ 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--T----------TIP-------TVGFNVETVTY----------------KN 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--C----------CCC-------CSSEEEEEEES----------------SS
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--C----------cCC-------ccceeEEEEEe----------------CC
Confidence 4568999999999999999999764311 1 001 23222233333 36
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HHHHHHc----CCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l~~~~~----~~~p~ilviNKiD~~ 163 (843)
+.++|+||||+.+|......+++.+|++|+|+|+++....+... .+..+.. .++|+++|+||+|+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 89999999999999988888999999999999999865443332 2233322 478999999999987
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.06 E-value=3.3e-10 Score=135.52 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=53.8
Q ss_pred eEEEEEeCCCCcc---cHHHHHHHhhccCcEEEEecCCCcccccHHHHHH-HHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d---f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~-~~~~~~~p~ilviNKiD~~ 163 (843)
..++||||||+.+ ....+..+++.+|++|+|+|++.+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999765 4556778889999999999999988777776665 3445678989999999986
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=1.3e-09 Score=120.48 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=72.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++.|+|+|++|+|||||+++|..... ... ...+.|.+.....+.+. +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~---------------~~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVD---------------TKLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-ccc---------------CCcccccCCEEEEEEEC----------------C
Confidence 356799999999999999999954321 111 11133444444445554 5
Q ss_pred eEEEEEeCCCCccc--------HHHHHHHhhccCcEEEEecCCCcc--cc-cH---HHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV--CV-QT---ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv--~~-qt---~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+.++||||+.+- ...+...++.+|++++|+|++++. .. +. ..+++.....+.|+++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 78899999997331 123455678999999999998764 12 21 122333333568999999999987
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.04 E-value=2.7e-10 Score=124.08 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=78.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|+...- .....+ .+.......+.. ++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~ 201 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMV--------------DGK 201 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC---------------CSEEEEEEEEEE--------------TTE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC---------------cccceeEEEEEE--------------CCE
Confidence 3457899999999999999999965321 110011 111111111112 223
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHH-HH-HHHHc--CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~-~l-~~~~~--~~~p~ilviNKiD~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|+++....+... .| ..+.. .++|+++|+||+|+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 567889999999999888888899999999999999865544432 22 22222 278999999999986
No 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.02 E-value=6.2e-10 Score=129.83 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=78.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCC
Q 003165 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNG 95 (843)
Q Consensus 16 ~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+....+|+++|.+|+|||||+++|....- .. ++ .-|+.....+.... ......-..++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~--~~---------~~-------~~t~g~~~~~~~~~----~~~~v~~~~~~ 95 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF--DP---------KE-------SQTHGLNVVTKQAP----NIKGLENDDEL 95 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------------------------CCCEEEEEGG----GSGGGTTCSTT
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC--CC---------CC-------CCccceEEEEeccc----cccceeecCCC
Confidence 34567899999999999999999954221 00 00 00111111111000 00000111233
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc--CCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~--~~~p~ilviNKiD~~ 163 (843)
+...++++||||+..|.......++.+|++|+|+|++.+ ......+..+.. .+.|+++|+||+|+.
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 478999999999999988888889999999999999875 233344444444 348999999999986
No 175
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.01 E-value=9.7e-10 Score=121.62 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=51.5
Q ss_pred ceEEEEEeCCCCccc-------------HHHHHHHhhccCcEEEEecCCC-ccc-ccHHHHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~e~~~~l~~~D~ailVvda~~-gv~-~qt~~~l~~~~~~~~p~ilviNKiD 161 (843)
...++||||||..++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998887 5667788899999999998743 222 3334555565567789999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 86
No 176
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.00 E-value=2.8e-10 Score=113.13 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=70.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|.+|+|||||+++|........ + ++.+ ..|+... ...+.+. ..+++...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~----~-----~~~~---t~g~~~~--~~~~~~~-----------~~~~~~~~ 57 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL----G-----MQSA---TVGIDVK--DWPIQIR-----------DKRKRDLV 57 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------------------CSEEEE--EEEC--------------------CE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC----C-----Ccce---eccEEeE--Eeeeccc-----------cCCCCceE
Confidence 4799999999999999999943211110 0 0000 0111111 1111110 00123678
Q ss_pred EEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCccc-ccHHHHH-HHHH--cCCCceEEEEECCccc
Q 003165 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~qt~~~l-~~~~--~~~~p~ilviNKiD~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|.+++.. ......| ..+. ..+.|+++|.||+|+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 9999999998887766777889999999999987632 2222222 2222 2467888999999976
No 177
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.99 E-value=8.6e-10 Score=110.99 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=76.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|....-.... . ..++.......+.+. ++.
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-----------~-----~t~~~~~~~~~i~~~--------------g~~ 53 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------K-----STIGVEFATRSIQVD--------------GKT 53 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------TEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------C-----CccceeEEEEEEEEC--------------CEE
Confidence 3578999999999999999999654321110 0 001111111223332 235
Q ss_pred eEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
..+.++||||+..|........+.+|++++|+|+.+....+....| ..+. ..+.|+++++||+|+.
T Consensus 54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 6788999999998877677778899999999999876544333223 2222 2467888999999986
No 178
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.99 E-value=9.9e-10 Score=121.20 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.5
Q ss_pred ceEEEEEeCCCCcc-------------cHHHHHHHhhccC-cEEEEecCCCcccccHH-HHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVD-------------FSSEVTAALRITD-GALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l~~~D-~ailVvda~~gv~~qt~-~~l~~~~~~~~p~ilviNKiD 161 (843)
...++||||||..+ +...+..+++.++ .+++|+|+..++..+.. .+++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46799999999642 3344556665555 45567788877777765 377777777899999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 209 l~ 210 (353)
T 2x2e_A 209 LM 210 (353)
T ss_dssp GS
T ss_pred cc
Confidence 86
No 179
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.98 E-value=3.3e-10 Score=123.90 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=74.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.+|+++|.+|+|||||+++|......+ .++ ...|.......+.+. ...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i----------~~~------~ftTl~p~~g~v~~~---------------~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI----------ADY------HFTTLVPNLGMVETD---------------DGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE----------SST------TSSCCCCCEEEEECS---------------SSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc----------ccC------CccccCceEEEEEeC---------------CCc
Confidence 4579999999999999999994322111 111 122444333334443 136
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCc---ccc-cHHHHHHHHHc-----CCCceEEEEECCcc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCV-QTETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~~-qt~~~l~~~~~-----~~~p~ilviNKiD~ 162 (843)
.+.|+||||+.+ +.....+.+..+|++|+|+|++.. -.. +...++..+.. .++|.++|+||+|+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 899999999643 455666677789999999999752 111 22233333333 36799999999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 287 ~ 287 (342)
T 1lnz_A 287 P 287 (342)
T ss_dssp T
T ss_pred C
Confidence 6
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.98 E-value=1.6e-09 Score=119.76 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=72.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|....... + ...+.|.......+.+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~-----~-----------~~~~~t~~~~~~~~~~~---------------- 212 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEI-----A-----------SYPFTTRGINVGQFEDG---------------- 212 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEE-----E-----------CCTTCSSCEEEEEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----C-----------CCCCeeeceeEEEEEec----------------
Confidence 356789999999999999999994322100 0 01122333222233332
Q ss_pred ceEEEEEeCCCCcccH--------HHHHHHh-hccCcEEEEecCCCcc--cccHH-HHHHHHHc--CCCceEEEEECCcc
Q 003165 97 EYLINLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGV--CVQTE-TVLRQALG--ERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~--------~e~~~~l-~~~D~ailVvda~~gv--~~qt~-~~l~~~~~--~~~p~ilviNKiD~ 162 (843)
+..+.++||||+.++. .....++ ..+|++++|+|++.+. ..+.. ..+..+.. .+.|+++++||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 5789999999986642 1222233 4689999999987643 33332 33333322 27899999999997
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 293 ~ 293 (357)
T 2e87_A 293 A 293 (357)
T ss_dssp C
T ss_pred C
Confidence 6
No 181
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.95 E-value=1.6e-09 Score=110.53 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=71.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|.+|+|||||+++|+.....+...... -|.+... ..+.+ ++.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~-------------~g~d~~~--~~i~~--------------~~~ 85 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-------------LGEDTYE--RTLMV--------------DGE 85 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEE--EEEEE--------------TTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc-------------cceeeEE--EEEEE--------------CCe
Confidence 345789999999999999999996433222110000 0111111 11222 223
Q ss_pred ceEEEEEeCCCCccc-HHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHHc----CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df-~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~~----~~~p~ilviNKiD~~ 163 (843)
...+.++||+|.... ........+.+|++|+|+|.++--..+...-| ..+.. .++|+++|.||+|+.
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 567889999998873 32233345789999999998864332222223 23322 368999999999986
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.94 E-value=1.1e-09 Score=117.96 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=73.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceEE
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLI 100 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|.++|..|+|||||+.++.. +..... ....+.|+......+ + +..++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~~~-------------~~~~~~Tig~~~~~v--~---------------~~v~L 48 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQPLD-------------TLYLESTSNPSLEHF--S---------------TLIDL 48 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCSGG-------------GTTCCCCCSCCCEEE--C---------------SSSCE
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCCCc-------------cceecCeeeeeeEEE--c---------------cEEEE
Confidence 488999999999999987632 111100 000122443332222 1 24689
Q ss_pred EEEeCCCCcccHH---HHHHHhhccCcEEEEecCCCcccccHHHHHH----HHH--cCCCceEEEEECCccc
Q 003165 101 NLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVLR----QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~---e~~~~l~~~D~ailVvda~~gv~~qt~~~l~----~~~--~~~~p~ilviNKiD~~ 163 (843)
+||||||+++|.. .....++.++++|+|+|+++. ......-|. .+. ..++|++++.||+|+.
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999999999964 457788999999999999986 333333332 221 3468899999999986
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.91 E-value=3.6e-09 Score=116.92 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=61.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+|+|+.|+|||||+++|+...... . + +.+....+...++++......+.+ ++..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~-~---~---~~~~~~~~~~~ti~~~~~~~~~~~--------------~~~~ 94 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYP-E---R---VIPGAAEKIERTVQIEASTVEIEE--------------RGVK 94 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC------------------CEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCC-C---C---cccCCCcccCCceeEEEEEEEeec--------------CCcc
Confidence 34689999999999999999984431111 0 1 111111122223333222222222 1224
Q ss_pred eEEEEEeCCCCcccHHH-------HH-------HHhhcc-------------CcEEEEecC-CCcccccHHHHHHHHHcC
Q 003165 98 YLINLIDSPGHVDFSSE-------VT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQALGE 149 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e-------~~-------~~l~~~-------------D~ailVvda-~~gv~~qt~~~l~~~~~~ 149 (843)
..++++||||+.|+... +. ..++.+ |+++++|+. ..++......+++.+ ..
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~ 173 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HN 173 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-cc
Confidence 57999999999554321 11 334333 357777776 456655555554443 57
Q ss_pred CCceEEEEECCccc
Q 003165 150 RIRPVLTVNKMDRC 163 (843)
Q Consensus 150 ~~p~ilviNKiD~~ 163 (843)
++|+|+|+||+|+.
T Consensus 174 ~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 174 KVNIVPVIAKADTL 187 (361)
T ss_dssp -SCEEEEEECCSSS
T ss_pred CCCEEEEEECCCCC
Confidence 78999999999976
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=1.3e-09 Score=121.62 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=47.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEe--ecccccccccC-----cC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE--MTDDALKSYKG-----ER 93 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~--~~~~~~~~~~~-----~~ 93 (843)
+|+|+|++|+|||||+++|+... ....... +.|+........+. .+...+...+. ..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p---------------~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYP---------------FTTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCC---------------CcccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 69999999999999999996543 2111111 12332222211111 00000000000 00
Q ss_pred C-CCceEEEEEeCCCCcccHH-------HHHHHhhccCcEEEEecCCCc
Q 003165 94 N-GNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEG 134 (843)
Q Consensus 94 ~-~~~~~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~g 134 (843)
+ .+...++|+||||+.++.. ....+++.+|++++|+|+.++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 1 1246799999999875321 222457899999999999875
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.90 E-value=6.6e-09 Score=105.11 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=71.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.-.+|+++|+.|+|||||+++|+.... .. .. ....|.|.... .+.+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-~~----------~~---~~~~G~~~~~~--~~~~~----------------~ 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-LA----------RT---SKTPGRTQLIN--LFEVA----------------D 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cc----------cc---cCCCccceeeE--EEEec----------------C
Confidence 446899999999999999999942210 00 00 01123332211 12222 2
Q ss_pred eEEEEEeCCCCccc----------HHHHHHHh---hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df----------~~e~~~~l---~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.++||||+.++ ...+...+ +.+|++++|+|+..+.......+.+.+...++|.+++.||+|+.
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 5789999998542 22222333 57899999999998876655566666667889999999999976
No 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.89 E-value=3.1e-09 Score=106.51 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=69.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|.+|+|||||+++|+.....+...... -|.+... ..+.++ +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~--------------~~~ 55 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-------------LGEDTYE--RTLMVD--------------GES 55 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-------------GCTTEEE--EEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-------------cceeEEE--EEEEEC--------------CeE
Confidence 35689999999999999999997654432221000 0111111 112222 235
Q ss_pred eEEEEEeCCCCccc-HHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH----cCCCceEEEEECCccc
Q 003165 98 YLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df-~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~----~~~~p~ilviNKiD~~ 163 (843)
..+.++||+|.... ........+.+|++++|+|.++--..+...-| ..+. ..++|++++.||+|+.
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 57789999997652 22223456789999999999874332222222 2222 2468999999999975
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.88 E-value=3.2e-09 Score=106.24 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=76.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGN 96 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|....-.... . ..++.......+.+. ++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-----------~-----~t~~~~~~~~~i~~~--------------g~ 76 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-----------K-----STIGVEFATRSIQVD--------------GK 76 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSC-----------C-----CCCSEEEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC-----------C-----CccceEEEEEEEEEC--------------CE
Confidence 34578999999999999999999653321110 0 011111112223332 23
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH-HHHH---cCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l-~~~~---~~~~p~ilviNKiD~~ 163 (843)
...+.++||||+..|...+....+.+|++++|+|.++....+....| ..+. ..+.|+++++||+|+.
T Consensus 77 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 77 TIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 45677899999998887777788899999999998875432222222 2222 2467888999999986
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.4e-09 Score=115.84 Aligned_cols=112 Identities=19% Similarity=0.292 Sum_probs=79.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-.|+|+|.+|+|||||+|+|......+.. .. +.|+......+.+. +.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~-~p---------------ftT~~~~~g~~~~~----------------~~ 119 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAE-YE---------------FTTLVTVPGVIRYK----------------GA 119 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGG-TC---------------SSCCCEEEEEEEET----------------TE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccC-CC---------------CceeeeeeEEEEeC----------------Cc
Confidence 347999999999999999999653322211 12 34666666666665 78
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc-----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~-----~~~p~ilviNKiD~~ 163 (843)
.+.|+||||..+ ....+...++.||++++|+|+.+.+.. ...+...+.. ...|.++++||+|+.
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999764 335677889999999999999875422 1222222222 346889999999984
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.85 E-value=2.6e-09 Score=117.87 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=43.6
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||... .....+..+|++++|+|+..+...+... . .....|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 467899999999654 2333458999999999988765443321 1 11235899999999986
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.83 E-value=1.2e-08 Score=121.41 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=53.4
Q ss_pred ceEEEEEeCCCCcc-------------cHHHHHHHh-hccCcEEEEecCCCcccccHH-HHHHHHHcCCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l-~~~D~ailVvda~~gv~~qt~-~~l~~~~~~~~p~ilviNKiD 161 (843)
...+.||||||... +...+..++ ..+|.+++|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45789999999654 222344444 478999999999999888877 688888888899999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 229 lv 230 (772)
T 3zvr_A 229 LM 230 (772)
T ss_dssp SS
T ss_pred cC
Confidence 86
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.72 E-value=4.9e-09 Score=107.15 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=70.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCccc-----ccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-----EVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG 91 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~-----~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.++++|+++|++|+|||||+++|+.......+ .+.+. ..|....+ ..|+++..-.....+......+...-.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHH-hCCCcEEEecCCceeecccHHHHHHHH
Confidence 46789999999999999999999886432111 01110 01111111 113322100000000000000000000
Q ss_pred cCCCCceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 92 ERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
...+..+.+|||||..+--.. .-...+.+++|+|+..+.. ..+......+.|.++++||+|+.
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGH
T ss_pred --hcCCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCC
Confidence 223578999999994211100 0024688999999988743 22333333468999999999986
No 192
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.71 E-value=1.2e-08 Score=116.76 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=72.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc-eEe--ecC-c--------ccccccCeeEeeeeEEEEEeeccc-
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRM--TDT-R--------ADEAERGITIKSTGISLYYEMTDD- 84 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~--~d~-~--------~~E~~rgiTi~~~~~~~~~~~~~~- 84 (843)
+.++|+|+|++|+|||||+++|.+..... |. +.. .|. . ......|+++.... ...++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-----G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~-----~~~dp~ 169 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-----GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSY-----TEMDPV 169 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECC-----CCSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEeccccchhHHHHHHHHhhccCceEEccC-----CCCCHH
Confidence 46799999999999999999998653211 11 111 111 0 01122344332210 00000
Q ss_pred cc-ccccCcCCCCceEEEEEeCCCCcc----cHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEE
Q 003165 85 AL-KSYKGERNGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLT 156 (843)
Q Consensus 85 ~~-~~~~~~~~~~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilv 156 (843)
.+ ...-......++.+.||||||+.. +..++....+ .+|.+++|+|+..|.. ....++.... .+|+ ++|
T Consensus 170 ~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvV 246 (504)
T 2j37_W 170 IIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVI 246 (504)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEE
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEE
Confidence 00 000000011367899999999863 4445443333 7899999999998853 2233333222 2674 789
Q ss_pred EECCccc
Q 003165 157 VNKMDRC 163 (843)
Q Consensus 157 iNKiD~~ 163 (843)
+||+|..
T Consensus 247 lNK~D~~ 253 (504)
T 2j37_W 247 VTKLDGH 253 (504)
T ss_dssp EECTTSC
T ss_pred EeCCccc
Confidence 9999975
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.62 E-value=2e-08 Score=105.39 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=28.8
Q ss_pred ccCcEEEEecCCCc--ccccHHHHH-HHH----HcCCCceEEEEECCccc
Q 003165 121 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 121 ~~D~ailVvda~~g--v~~qt~~~l-~~~----~~~~~p~ilviNKiD~~ 163 (843)
.+|++|+|+|+++. -..+...-| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 68999999999875 333222222 222 23578999999999976
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.56 E-value=1.9e-07 Score=104.40 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=68.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|+++|++|+|||||+++|...... +.++. ..|+......+.+. ...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~----------i~~~~------ftTl~p~~G~V~~~---------------~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPK----------IAPYP------FTTLSPNLGVVEVS---------------EEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCE----------ECCCT------TCSSCCEEEEEECS---------------SSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcc----------ccCcc------cceecceeeEEEec---------------Ccc
Confidence 346899999999999999999332111 11110 12232222233332 136
Q ss_pred EEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc-----CCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~-----~~~p~ilviNKiD~~ 163 (843)
.++++||||+.+ +.......+..+|.++.|+|+......+....+++... ...|.++++||+|..
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 789999999854 22344555677999999999971111112222222221 257999999999976
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.55 E-value=1.2e-07 Score=104.25 Aligned_cols=61 Identities=21% Similarity=0.125 Sum_probs=38.0
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.|+||||..+-. ......+|++++|+|+..|...+... . .-...|.++++||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~--~--~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIK--R--GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhH--H--HHHhcCCEEEEeeecCC
Confidence 36789999999964332 23357899999999998874333211 1 12356889999999986
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=8.1e-08 Score=105.18 Aligned_cols=98 Identities=27% Similarity=0.221 Sum_probs=56.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (843)
.+|+|+|.+|+|||||+++|.... .......+ .|+......+.+.... ..+............
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~---------------tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPF---------------CTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC---------------CCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC---------------ceECceEEEEecCCcccceeeeeecccceeee
Confidence 479999999999999999997643 11110011 1222222222222000 000000000000135
Q ss_pred EEEEEeCCCCcccHH-------HHHHHhhccCcEEEEecCCC
Q 003165 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 99 ~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~ 133 (843)
.++|+||||..++.. .....++.+|++++|+|+.+
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999988753 24567899999999999987
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.48 E-value=1.6e-07 Score=98.46 Aligned_cols=66 Identities=21% Similarity=0.107 Sum_probs=45.4
Q ss_pred ceEEEEEeCCCCcccHH------HHHHHhhccCcEEEEecCCCcccccHHH-H----HHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTET-V----LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~------e~~~~l~~~D~ailVvda~~gv~~qt~~-~----l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.+.||||||..++.. .+..++.. +.+|+|+|+..+....... . +......++|.++|+||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 46899999999987642 23345555 8889999987765544322 1 122234578999999999976
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.47 E-value=6.9e-07 Score=98.35 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=57.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-cccccccCcCC----
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYKGERN---- 94 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~---- 94 (843)
.+|+|+|++|+|||||+++|......+.. ..+ .|+........+.... ..+.......+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~-~p~---------------~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN-YPF---------------ATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS-CCG---------------GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC-CCC---------------ceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 47999999999999999999875321111 011 1222221111111000 00000000000
Q ss_pred CCceEEEEEeCCCCccc-------HHHHHHHhhccCcEEEEecCCC
Q 003165 95 GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~ 133 (843)
.....++|+||||...+ .......++.+|++++|+|+.+
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 02467999999998875 3456678899999999999986
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.46 E-value=1e-06 Score=98.52 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=62.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+|+|+.|+|||||+++|+........ .|... .+. .-|+....+.+.+. ..+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~-~~~-------~~t~~~~~i~~v~q------------~~~~~~~ 89 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPS-HRI-------KKTVQVEQSKVLIK------------EGGVQLL 89 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC-------------CCEEEEEECC------------------CEE
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcc-cCC-------ccceeeeeEEEEEe------------cCCcccc
Confidence 46899999999999999999543211111 11000 000 00111111111111 0112347
Q ss_pred EEEEeCCCCcccHH------HH--------HHH-----------hhc--cCcEEEEecCC-CcccccHHHHHHHHHcCCC
Q 003165 100 INLIDSPGHVDFSS------EV--------TAA-----------LRI--TDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh~df~~------e~--------~~~-----------l~~--~D~ailVvda~-~gv~~qt~~~l~~~~~~~~ 151 (843)
++++||||..++.. .+ ..+ ++. +++++++++.+ .|+.+....+++.+. .++
T Consensus 90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v 168 (418)
T 2qag_C 90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKV 168 (418)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTS
T ss_pred eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccC
Confidence 89999999876532 11 111 122 33466666665 678777766666654 488
Q ss_pred ceEEEEECCccc
Q 003165 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNKiD~~ 163 (843)
++|+|+||+|+.
T Consensus 169 ~iIlVinK~Dll 180 (418)
T 2qag_C 169 NIIPLIAKADTL 180 (418)
T ss_dssp EEEEEEESTTSS
T ss_pred cEEEEEEcccCc
Confidence 999999999975
No 200
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.45 E-value=1.5e-06 Score=91.73 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=69.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeec--CcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD--TRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d--~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.|++++|+.|+|||||++.|....... .|+..... .......++++. .+.. .+-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~----~G~i~~~g~~i~~~~~~~~i~~-------v~q~------------~~~~ 59 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR----KASSWNREEKIPKTVEIKAIGH-------VIEE------------GGVK 59 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEEE-------SCC----------------C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC----CCccccCCcccCcceeeeeeEE-------Eeec------------CCCc
Confidence 489999999999999999997654321 23211111 001111112211 1110 0113
Q ss_pred eEEEEEeCCCCccc-------------HH-----HHHHH----------hhccCcEEEEecCC-CcccccHHHHHHHHHc
Q 003165 98 YLINLIDSPGHVDF-------------SS-----EVTAA----------LRITDGALVVVDCI-EGVCVQTETVLRQALG 148 (843)
Q Consensus 98 ~~i~liDTPGh~df-------------~~-----e~~~~----------l~~~D~ailVvda~-~gv~~qt~~~l~~~~~ 148 (843)
..++++|+||..+. .. ..... +..+.++++++|.. +|..+....+++.+..
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh
Confidence 36899999996431 10 11111 11257788999955 8999999888888766
Q ss_pred CCCceEEEEECCccc
Q 003165 149 ERIRPVLTVNKMDRC 163 (843)
Q Consensus 149 ~~~p~ilviNKiD~~ 163 (843)
. +++|+++||+|..
T Consensus 140 ~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 V-VNIIPVIAKADTM 153 (270)
T ss_dssp T-SEEEEEETTGGGS
T ss_pred c-CcEEEEEeccccC
Confidence 6 8999999999965
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.38 E-value=1.3e-06 Score=97.51 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=67.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNE 97 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.+.|++|+|+.|+|||||++.|+... + .|. ...... .+.+.. .+.+.+.. .+-.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l----~g~-~~~~~~-----~~~~~~--~i~~v~Q~------------~~l~ 94 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--F----EGE-PATHTQ-----PGVQLQ--SNTYDLQE------------SNVR 94 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C------------CC-----SSCEEE--EEEEEEEC--------------CE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--c----cCC-cCCCCC-----ccceEe--eEEEEeec------------Cccc
Confidence 45679999999999999999996542 1 111 000000 122222 12222221 0012
Q ss_pred eEEEEEeCCCCcccH-------------H-HHHHHh------h-------cc--C-cEEEEecCCCcccccHHHHHHHHH
Q 003165 98 YLINLIDSPGHVDFS-------------S-EVTAAL------R-------IT--D-GALVVVDCIEGVCVQTETVLRQAL 147 (843)
Q Consensus 98 ~~i~liDTPGh~df~-------------~-e~~~~l------~-------~~--D-~ailVvda~~gv~~qt~~~l~~~~ 147 (843)
..++++|+||..+.. . .....+ + .+ | ++++|+|+.+|.......+++.+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 368999999976431 1 111111 1 11 2 467889999999888888877664
Q ss_pred cCCCceEEEEECCccc
Q 003165 148 GERIRPVLTVNKMDRC 163 (843)
Q Consensus 148 ~~~~p~ilviNKiD~~ 163 (843)
.+.|+|+++||+|..
T Consensus 175 -~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 175 -SKVNIIPIIAKADAI 189 (427)
T ss_dssp -SCSEEEEEESCGGGS
T ss_pred -hCCCEEEEEcchhcc
Confidence 788999999999965
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.35 E-value=8.6e-08 Score=106.11 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=68.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-++|+++|.+|+|||||+|+|+........ .... ....|.|..... +.+ +.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~----~~~~------~~~~gtT~~~~~--~~~-----------------~~ 212 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGN----VITT------SYFPGTTLDMIE--IPL-----------------ES 212 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTC----CCEE------EECTTSSCEEEE--EEC-----------------ST
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCcc----ceee------cCCCCeEEeeEE--EEe-----------------CC
Confidence 368999999999999999999876210000 0000 011234443322 222 22
Q ss_pred EEEEEeCCCCcccH-------HHHHHHh---hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-------~e~~~~l---~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++||||..+.. .+....+ +..|.+++++|+...........+.++...+.|+++++||+|..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 37999999975432 2233333 67899999999843211111111233345677899999999986
No 203
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.26 E-value=8.8e-07 Score=97.94 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=53.3
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccc-cccccc
Q 003165 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD-ALKSYK 90 (843)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~ 90 (843)
++.....-.+|+|+|.+|+|||||+++|....- .... ..+.|+......+.+..... .+....
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~---------------~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAEN---------------FPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccC---------------CCccccCceeEEEEECCccceeecccc
Confidence 334444456799999999999999999964321 1110 11234443333333321000 000000
Q ss_pred CcCCCCceEEEEEeCCCCcccHH-------HHHHHhhccCcEEEEecCCC
Q 003165 91 GERNGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~ 133 (843)
.........++++||||...+.. .....++.+|++++|+|+.+
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 00000134699999999987654 56778899999999999975
No 204
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.25 E-value=2.6e-07 Score=102.11 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCc-ccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
++|+++|.+|+|||||+|+|+...... ... . ......|.|..... +.+ +.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~-~---------~~~~~~gtT~~~~~--~~~-----------------~~ 211 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENV-I---------TTSHFPGTTLDLID--IPL-----------------DE 211 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC-C---------EEECCC----CEEE--EES-----------------SS
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccc-e---------ecCCCCCeecceEE--EEe-----------------cC
Confidence 689999999999999999998764211 100 0 00111244443322 222 12
Q ss_pred EEEEEeCCCCcccH-------HHHHHH---hhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFS-------SEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-------~e~~~~---l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.++||||..+.. .+.... ....+.+++++|+...+.......+.++...+.|+++++||+|..
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 37899999975422 222222 356788999999843211111111223335577899999999986
No 205
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.22 E-value=5.9e-06 Score=88.73 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCceE
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYL 99 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|....-... .| ... +..+ ... |+......+.+. ..+....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~-~g~~--~~~--t~~~~~~~~~~q------------~~~~~~~ 77 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE---RV-ISG-AAEK--IER--TVQIEASTVEIE------------ERGVKLR 77 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---------------CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC---CC-ccc-CCcc--cCC--cceEeeEEEEec------------CCCcccC
Confidence 5789999999999999999854211111 11 000 0000 000 111111112221 1122467
Q ss_pred EEEEeCCCC-------cccHHHHH-------HHhhcc-------------CcEEEEecCCC-cccccHHHHHHHHHcCCC
Q 003165 100 INLIDSPGH-------VDFSSEVT-------AALRIT-------------DGALVVVDCIE-GVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh-------~df~~e~~-------~~l~~~-------------D~ailVvda~~-gv~~qt~~~l~~~~~~~~ 151 (843)
++++||||. ..|...+. ..++.+ ++++++++.+. |+.+....+++.+ ..++
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l-~~~~ 156 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKV 156 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH-TTTS
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH-HhcC
Confidence 999999998 33332222 333332 23566666544 5777666666654 3467
Q ss_pred ceEEEEECCccc
Q 003165 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNKiD~~ 163 (843)
++++++||.|+.
T Consensus 157 ~iilV~~K~Dl~ 168 (301)
T 2qnr_A 157 NIVPVIAKADTL 168 (301)
T ss_dssp CEEEEECCGGGS
T ss_pred CEEEEEEeCCCC
Confidence 899999999976
No 206
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.10 E-value=3.1e-06 Score=95.24 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHHh------hccCcEEEEecCCCcccccHHHHHHHHHcCCC-c-eEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l------~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~-p-~ilviNKiD~~ 163 (843)
.++.+.||||||...........+ ..+|.+++|+|+..|. ......+. ....+ | ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 467889999999876433332222 2579999999998874 22222222 23446 6 66899999965
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.08 E-value=1.2e-06 Score=95.62 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=37.8
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||..+-.. .....+|.+++|+|+..|-..+. +.... ...+.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 367899999999765322 23478999999999865422110 00000 124668888999964
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.06 E-value=6.8e-06 Score=92.47 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=71.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCc-eEeecCcc-----------cccccCeeEeeeeEEEEEeecccc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRA-----------DEAERGITIKSTGISLYYEMTDDA 85 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~d~~~-----------~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
..++|+++|+.|+||||++..|.+....- .|. +...|..+ .....|+.+-..... .+ ....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~--~d-p~~i 171 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVG--QK-PVDI 171 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSS--SC-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCC--CC-HHHH
Confidence 46899999999999999999997643211 011 11111111 011223332211000 00 0000
Q ss_pred cccccCcCCCCceEEEEEeCCCCcccHHHHHHH------hhccCcEEEEecCCCcccccHHHHHHHHHcCCCce-EEEEE
Q 003165 86 LKSYKGERNGNEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN 158 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~------l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~-ilviN 158 (843)
+...-......++.+.||||||...+...+..+ +..+|.+++|+|+..|. ......+.. ..++++ -+++|
T Consensus 172 ~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f-~~~l~i~gvVln 248 (433)
T 2xxa_A 172 VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF-NEALPLTGVVLT 248 (433)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHH-HHHSCCCCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHH-hccCCCeEEEEe
Confidence 000000011136789999999987765444433 34678999999998762 222222221 223553 37999
Q ss_pred CCccc
Q 003165 159 KMDRC 163 (843)
Q Consensus 159 KiD~~ 163 (843)
|+|..
T Consensus 249 K~D~~ 253 (433)
T 2xxa_A 249 KVDGD 253 (433)
T ss_dssp CTTSS
T ss_pred cCCCC
Confidence 99964
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.02 E-value=9.6e-06 Score=89.80 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=61.8
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecc-ccccccc
Q 003165 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-DALKSYK 90 (843)
Q Consensus 12 ~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~ 90 (843)
++.....-.+|+|+|++|+|||||+++|...........+ +.|+......+.+.... ..+....
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p---------------~tTi~p~~G~v~v~~~r~~~l~~~~ 77 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP---------------YATIDPEEAKVAVPDERFDWLCEAY 77 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS---------------SCCCCTTEEEEEECCHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC---------------ceeecceeeeeeeCCcchhhhhhhc
Confidence 3444445568999999999999999999764321111111 12333333333332100 0000000
Q ss_pred CcCCCCceEEEEEeCCCCcc-------cHHHHHHHhhccCcEEEEecCCC
Q 003165 91 GERNGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.....-...+.++||||... +.......++.+|+++.|+|+.+
T Consensus 78 ~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 78 KPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000024689999999654 44567788899999999999975
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=9.8e-06 Score=90.78 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=42.9
Q ss_pred CceEEEEEeCCCCcc------cHHHHHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~d------f~~e~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++.+.||||||... +..++....+ ..|.++||+|+..|-.. ....+...+.-.+..+++||+|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 467889999999754 5555554333 35899999999987332 223333222223466899999964
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.93 E-value=2.1e-05 Score=88.14 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=40.3
Q ss_pred ceEEEEEeCCCCcccH----HHHH--HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS----SEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~--~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
++.+.||||||..... .++. ..+..+|.++||+||..|-. .....+.. ....+ ..+++||+|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f-~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAF-KEATPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHH-HHSCTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHH-HhhCCCeEEEEECCCCc
Confidence 4789999999965432 2322 22335799999999998632 22233322 22344 45899999965
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.88 E-value=4.3e-05 Score=81.71 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=71.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcc-----c------ccccCeeEeeeeEEEEEeecccccc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRA-----D------EAERGITIKSTGISLYYEMTDDALK 87 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~-----~------E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.+.|+++|+.|+||||++..|......- .+++.+.|... . ....|+.+-..... ......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~----g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~---~~p~~~~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK----GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGE---KDVVGIAK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT----TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTC---CCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCC---CCHHHHHH
Confidence 4678999999999999999996543110 11222222211 0 01123333211000 00000000
Q ss_pred cccCcCCCCceEEEEEeCCCCcc--cHHHHH------HHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEE
Q 003165 88 SYKGERNGNEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 158 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~d--f~~e~~------~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviN 158 (843)
..-......++.+.||||||... ....+. ..+..+|.+++|+|+..| .+.....+.... .++ ..+++|
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEe
Confidence 00000111367899999999877 433322 345578999999999865 233333333332 467 557999
Q ss_pred CCccc
Q 003165 159 KMDRC 163 (843)
Q Consensus 159 KiD~~ 163 (843)
|+|..
T Consensus 248 k~D~~ 252 (297)
T 1j8m_F 248 KMDGT 252 (297)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 99964
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.87 E-value=1.4e-05 Score=92.92 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=64.9
Q ss_pred CHHHHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeeccc
Q 003165 5 TAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDD 84 (843)
Q Consensus 5 ~~~~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
+.+.+..+.....+...|+|+|.+|+|||||+|+|+.....+.- .|++ ++.|. ..+.|..+
T Consensus 24 ~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~--~~tt-----------~~~T~----gi~~~~~~-- 84 (592)
T 1f5n_A 24 NPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL--GSTV-----------QSHTK----GIWMWCVP-- 84 (592)
T ss_dssp CHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC--CCSS-----------SCCCC----SEEEEEEE--
T ss_pred CHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcccc--CCCC-----------CCcee----EEEEeecc--
Confidence 34444433333456788999999999999999999654322211 1110 01111 11222100
Q ss_pred ccccccCcCCCCceEEEEEeCCCCcccHH------HHHHHhhccCcEEEEecCCCcccccHHHHHHHHH
Q 003165 85 ALKSYKGERNGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 147 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~------e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~ 147 (843)
.....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+.
T Consensus 85 -------~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 85 -------HPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp -------CSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHH
T ss_pred -------cccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHH
Confidence 0112356899999999765322 1222233322337888888888777776665544
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.87 E-value=9.6e-06 Score=82.70 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.++|+|+|+.|+|||||+++|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998764
No 215
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.67 E-value=4.2e-05 Score=83.74 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-----------cccHHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-----------~~qt~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.+|||+|+..|........+.++++|+|+|.++-- .......+..+.. .++|++||.||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 688999999999999999999999999999999998721 1122233444433 4689999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 85
No 216
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.50 E-value=8.6e-05 Score=81.54 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCc----------c-cccHHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG----------V-CVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g----------v-~~qt~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.++||+|+..|......+.+.++++|+|+|.++- - .......|..+.. .++|+|||+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 68899999999999999888999999999999999871 1 1122234444433 4679999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 217
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.47 E-value=0.00016 Score=72.39 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=50.4
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCC-----CceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~-----~p~ilviNKiD~~ 163 (843)
.+.+.|||||+.. ...+..++..+|.+++|+.....- ..+...++.+...+ .++.+++|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999976 456778889999999999988765 66667777765443 5667899999954
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.42 E-value=0.00037 Score=77.63 Aligned_cols=117 Identities=14% Similarity=0.086 Sum_probs=67.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCcccccCCceEeecCcccccccCeeEeeeeEEEEEeecccccccccCcCCCCce
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEY 98 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...++|+|+.|+|||||++.|... +.. ..|... .+..+..+ ++ +.+.. ....
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl---~~p-~~GsI~-~~g~~~t~-~~---------~v~q~-------------~~~~ 120 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI---GNE-EEGAAK-TGVVEVTM-ER---------HPYKH-------------PNIP 120 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC---CTT-STTSCC-CCC----C-CC---------EEEEC-------------SSCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC---CCc-cCceEE-ECCeecce-eE---------Eeccc-------------cccC
Confidence 348999999999999999999652 111 122211 11000000 11 11220 0122
Q ss_pred EEEEEeCCCCcc---cHHHHHHH--hhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccccc
Q 003165 99 LINLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL 165 (843)
Q Consensus 99 ~i~liDTPGh~d---f~~e~~~~--l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~~~ 165 (843)
.++++|+||... -..+.... +...|..++ +|+.. .+.|-..+.+.+...+.|+++++||.|..++
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDIT 190 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccccc
Confidence 578999999642 12233332 233344443 66654 3566667777777788999999999998643
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.0003 Score=75.91 Aligned_cols=65 Identities=22% Similarity=0.348 Sum_probs=39.1
Q ss_pred CceEEEEEeCCCCcccHHHHHHHh------------hccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAAL------------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l------------~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~ 162 (843)
.++.+.||||||...........+ ..+|.+++|+|+..| ..+....+. .....++. +++||+|.
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~-~~~~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEE-FSKVADVSGIILTKMDS 266 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHH-HTTTSCCCEEEEECGGG
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHH-HhhcCCCcEEEEeCCCC
Confidence 367899999999766433322222 137899999999854 122221222 12234443 78999996
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 267 ~ 267 (320)
T 1zu4_A 267 T 267 (320)
T ss_dssp C
T ss_pred C
Confidence 4
No 220
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.39 E-value=0.00051 Score=80.82 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCccc---------HHHH---HHH-hhcc-CcEEEEecCCCcccccH-HHHHHHHHcCCCceEEEEECCcc
Q 003165 98 YLINLIDSPGHVDF---------SSEV---TAA-LRIT-DGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 98 ~~i~liDTPGh~df---------~~e~---~~~-l~~~-D~ailVvda~~gv~~qt-~~~l~~~~~~~~p~ilviNKiD~ 162 (843)
-.+.|+|.||...- ...+ ... +..- ..+++++++......+. ..+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 45899999985421 1222 222 3332 45667777665544333 34556666678899999999998
Q ss_pred c
Q 003165 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 227 v 227 (608)
T 3szr_A 227 V 227 (608)
T ss_dssp S
T ss_pred c
Confidence 7
No 221
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.36 E-value=0.00013 Score=79.18 Aligned_cols=67 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC-------ccc----ccHHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVC----VQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-------gv~----~qt~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.+|||+|+..|........+.++++|+|+|.++ .-. ......|..+.. .++|++||.||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 6889999999999999999999999999999999972 111 122233443332 4679999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 222
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.31 E-value=0.00025 Score=76.49 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=51.5
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCC-------Cccccc----HHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCVQ----TETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~-------~gv~~q----t~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.+|||.|+..|..-...+.+.++++|+|+|.+ +.-... ....|..+.. .++|+++|.||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 689999999999999998999999999999999776 221121 2233444432 4679999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 246 L~ 247 (327)
T 3ohm_A 246 LL 247 (327)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.27 E-value=0.00022 Score=75.58 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...+|+++|.+|+|||||+|+|+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34579999999999999999997543
No 224
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.24 E-value=0.00022 Score=79.02 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=51.8
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC----------cccc-cHHHHHHHHHc----CCCceEEEEECCc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCV-QTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~----------gv~~-qt~~~l~~~~~----~~~p~ilviNKiD 161 (843)
+..+.||||+|+..|........+.++++|+|+|.++ --.. .....+..+.. .++|++||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6889999999999999999999999999999999987 1111 12233333332 3578999999999
Q ss_pred cc
Q 003165 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 225
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.24 E-value=0.00041 Score=69.76 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeeecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeE
Q 003165 373 NGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (843)
Q Consensus 373 ~~plva~VfK~~~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv 452 (843)
++||.+.|..++. ..|. +..+||.+|++++||.|.++..+ . ..+|.+|+.. .+++++|.|||.+
T Consensus 4 ~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~~----~~~~~~A~aGd~V 67 (204)
T 3e1y_E 4 GSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILSD----DVETDTVAPGENL 67 (204)
T ss_dssp ---CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECSS----SSCBSEECTTSEE
T ss_pred CCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEEC----CEEeEEECCCCEE
Confidence 5788888877765 4565 89999999999999999986421 1 2688888743 4689999999999
Q ss_pred EE--eccccccccce-eeecCC
Q 003165 453 AM--VGLDQFITKNA-TLTNEK 471 (843)
Q Consensus 453 ~i--~gl~~~~~~tg-Tl~~~~ 471 (843)
++ .|++..-...| +|+++.
T Consensus 68 ~l~L~gi~~~di~rG~vl~~~~ 89 (204)
T 3e1y_E 68 KIRLKGIEEEEILPGFILCDPN 89 (204)
T ss_dssp EEEEEESSSSCCCTTCEEBCSS
T ss_pred EEEEcCCCHHHCccceEEECCC
Confidence 99 67764333556 888755
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.18 E-value=0.00037 Score=75.39 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=38.5
Q ss_pred ceEEEEEeCCCCcc----cHHHHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVD----FSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d----f~~e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
++.+.++||+|... +..++.... -..|-.++|+|+..|- +....++...+.--.-++++||+|..
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 34567899999743 344433222 2468899999987762 22233333222222347889999954
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.08 E-value=0.00021 Score=74.86 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++++|.+|+|||||+++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58999999999999999999753
No 228
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.07 E-value=0.0019 Score=65.01 Aligned_cols=65 Identities=11% Similarity=-0.046 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCC-cccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc-CCCceEEEEECCccc
Q 003165 97 EYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh-~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~-~~~p~ilviNKiD~~ 163 (843)
.+.+.|||||+. .+. .+..++..+|.+|+++.....-...+...++.+.. .+.+..+++|+.|..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 578999999997 543 45678889999999999876544555566666655 367777899999965
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.02 E-value=0.00079 Score=76.13 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+|+|..|+|||||+..|...
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 357899999999999999999654
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.01 E-value=0.00069 Score=72.53 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+.|+++|+.|+||||++..|...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 3467899999999999999999654
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.01 E-value=0.003 Score=70.94 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCHHHHHhhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 4 ~~~~~~~~~~~~----~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.+.+.+++.. ..++.-|+|+|..++|||||+|+|+..
T Consensus 48 v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp ECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 355666666553 356888999999999999999999976
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.98 E-value=0.00087 Score=74.88 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=39.1
Q ss_pred CceEEEEEeCCCCccc----HHHHHH--HhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDF----SSEVTA--ALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df----~~e~~~--~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
.++.+.||||||.... ..++.. .+..+|.+++|+|+..|. ......+.. ...++ .-+++||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f-~~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAF-DEKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHH-HHHTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHH-HhcCCceEEEEeCcCCc
Confidence 3678899999997644 222222 223589999999997651 222222221 22344 45789999964
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.90 E-value=0.0017 Score=69.13 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=37.8
Q ss_pred CceEEEEEeCCCCcccHHH----HHHHhh--ccCcEEEEecCCCcccccHHHHHHHHHcCC-Cc-eEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSE----VTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e----~~~~l~--~~D~ailVvda~~gv~~qt~~~l~~~~~~~-~p-~ilviNKiD~~ 163 (843)
.++.+.|+||||....... +...+. ..|.+++|+|++.+. ..+.+.+.... ++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~----~~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY----EDMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH----HHHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH----HHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 3578999999997655433 222332 257789999988653 12222222221 22 33677999965
No 234
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.81 E-value=0.00056 Score=74.78 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=49.8
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC-------ccccc----HHHHHHHHHc----CCCceEEEEECC
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQ----TETVLRQALG----ERIRPVLTVNKM 160 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-------gv~~q----t~~~l~~~~~----~~~p~ilviNKi 160 (843)
+...+.||||+|+..|........+.+|++|+|+|.++ .-... ....+..+.. .++|++||.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 46789999999999999999999999999999999871 11112 2233333332 467899999999
Q ss_pred ccc
Q 003165 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 975
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.79 E-value=0.0013 Score=70.39 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|+++|+.|+|||||+..|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999654
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.58 E-value=0.0016 Score=69.32 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCCcccH----HHHHHHh--hccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFS----SEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~~~l--~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~~ 163 (843)
++.+.||||||..... .++.... ..+|.+++|+|+..+ ..+....+... ...+ .-+++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCC
Confidence 5789999999865432 2222222 247899999998754 12222222222 1244 34789999964
No 237
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.47 E-value=0.004 Score=66.47 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=44.7
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc----CCCceE-EEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~----~~~p~i-lviNKiD~ 162 (843)
..+.+.|||||+..... .+..++..+|.+|+|+.+...-...+..+++.+.. .+++++ +|+|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 36889999999865432 23457789999999998765333344445555543 345555 79999983
No 238
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.36 E-value=0.0079 Score=58.89 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=93.5
Q ss_pred CCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003165 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (843)
+.-+.||.+.|+-+- .-...+++-++.|-..|.++||.+|+.+-..|...+.|+++-..+|+|...|.+.. .|++.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567888888887542 33445566677788899999999999999999999999999999999999999988 88888
Q ss_pred cccCCCCc-EEEEEEeechhhcCchHHHhhhCCCceEe
Q 003165 759 MQRPGTPL-YNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (843)
Q Consensus 759 ~~~~g~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+..+ . ..++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7654 3 78899999999999999999999999754
No 239
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.30 E-value=0.008 Score=60.05 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=94.7
Q ss_pred CCCccceEEEEeeeeecccccccCCCchHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003165 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~~~~a~~~a~~~al~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~ 758 (843)
+.-+.||.|.|+-+- .-...+++-++.|-..|.++||.+|+.+-..|...+.|+++-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 456788888776442 33456666677889999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEe
Q 003165 759 MQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+..+ ...++..+|..+.-.|...|..+|+|++.+
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 8653 578899999999999999999999999854
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.30 E-value=0.0013 Score=70.34 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=49.0
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-cccH-HHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~qt-~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.++++|| ++.|..-...+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 6899999 8888877778899999999999999753 2222 223334455789999999999986
No 241
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.29 E-value=0.0034 Score=66.38 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=44.0
Q ss_pred EEeCCCCc-ccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 102 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~-df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|=+-|||. ....++...+..+|+++.|+||.++.......+-+.+ .++|.++++||+|+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 44679997 5778899999999999999999998766544433332 578999999999987
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.77 E-value=0.024 Score=60.38 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..++++|+.|+|||||+..|...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999664
No 243
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.76 E-value=0.018 Score=58.79 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=48.4
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCC---ceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI---RPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~---p~ilviNKiD~~ 163 (843)
.+.+.|||||+..+. .+..++..+|.+|+|+.....-...+..+++.+...+. ..-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999997643 56678899999999999875444555666666666553 355799999964
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.65 E-value=0.06 Score=58.67 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+++|+.|+|||||+..|...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 357899999999999999999664
No 245
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.58 E-value=0.013 Score=64.31 Aligned_cols=62 Identities=18% Similarity=-0.002 Sum_probs=40.4
Q ss_pred EEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+.-+|+| +.+|........+.+|++++|+|+.+........+.+.+ .+.|+++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcC
Confidence 34455665 778988888888999999999999985533332332332 368999999999986
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.14 E-value=0.0052 Score=64.21 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=39.0
Q ss_pred CCCccc-HHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 106 PGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df-~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
|||... ..++...+..+|.++.|+||.++.......+ .. . ++|+++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~l-l--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DF-S--RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CC-T--TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hh-c--CCCcEEEEECccCC
Confidence 898754 4688999999999999999998765543222 11 1 89999999999987
No 247
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.73 E-value=0.013 Score=62.60 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.3
Q ss_pred CcccHHHHHHHhhccCcEEEEecCCCcc-cccH-HHHHHHHHcCCCceEEEEECCccc
Q 003165 108 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 108 h~df~~e~~~~l~~~D~ailVvda~~gv-~~qt-~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+..|..-...+++.+|++++|+|+++.. ..+. ...+..+...++|+++|+||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4444433445789999999999999753 3332 234445667889999999999986
No 248
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.67 E-value=0.058 Score=55.96 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=50.5
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~ 162 (843)
..+.+.|||||+..........++..+|.+|+|+.....-...+...++.+.+.+.+.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46889999999976543333344557999999999877655566677777777788877 89999984
No 249
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.57 E-value=0.014 Score=62.31 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|++|+|||||+++|+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4789999999999999999943
No 250
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.49 E-value=0.19 Score=56.10 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=30.4
Q ss_pred cCHHHHHhhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 4 FTAEGLRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 4 ~~~~~~~~~~~~----~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.+.+..++.. ..++.-|+|+|..++|||+|+|.|+..
T Consensus 48 ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp ECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHH
Confidence 456666666543 357888999999999999999988754
No 251
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.33 E-value=0.036 Score=60.79 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=38.4
Q ss_pred CcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 108 HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 108 h~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
..+|...+....+.+|++++|+|+.+........+.+. ..++|+++|+||+|+.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLI 109 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGS
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcC
Confidence 46788888888889999999999987321111122122 2378999999999986
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.91 E-value=0.068 Score=56.86 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|++|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999997
No 253
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.71 E-value=0.17 Score=53.03 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=38.6
Q ss_pred CceEEEEEeCCCCcccHHH-HHHHhhccCcEEEEecCCCcccccHHHHHHHHH----cCCCceE-EEEECCc
Q 003165 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~----~~~~p~i-lviNKiD 161 (843)
..+.+.||||||......- .......+|.+|+|+.+...-...+..+++.+. ..+.+++ +++|+.+
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 188 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRN 188 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3688999999996422111 112336799999999876432222223333322 2356643 7899986
No 254
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.63 E-value=0.2 Score=51.85 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCCcccHHH-HHHHhhccCcEEEEecCCCcccccHHHHHHHHHc----CCCce-EEEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRP-VLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~----~~~p~-ilviNKiD~ 162 (843)
..+.+.||||||......- .......+|.+|+|+.+...-...+..+++.+.. .+.+. -+++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999996432111 1112357999999998765322333333333322 24554 478999873
No 255
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.38 E-value=0.095 Score=55.78 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=36.5
Q ss_pred HhhccCcEEEEecCCCcccccH--HHHHHHHHcCCCceEEEEECCccc
Q 003165 118 ALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 118 ~l~~~D~ailVvda~~gv~~qt--~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+..+|.+++|+|+.++..... ...+..++..++|+++++||+|+.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 6889999999999997654433 244455667899999999999987
No 256
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.02 E-value=0.1 Score=52.07 Aligned_cols=65 Identities=5% Similarity=-0.049 Sum_probs=35.5
Q ss_pred EEEEEeCC------CCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH---HHHH-c----CCCceEEEEECC-ccc
Q 003165 99 LINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL---RQAL-G----ERIRPVLTVNKM-DRC 163 (843)
Q Consensus 99 ~i~liDTP------Gh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l---~~~~-~----~~~p~ilviNKi-D~~ 163 (843)
++..-.+| |+..+......+...+|++|+|||+++--....+.-+ ..+. . .+.|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 55666777 5555666678899999999999999875322344333 1111 1 467999999995 665
No 257
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.98 E-value=0.053 Score=52.90 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+++|+|+.|+|||||++.|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976654
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.89 E-value=0.049 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++|+|+.|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999764
No 259
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.81 E-value=0.12 Score=52.34 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=49.9
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
..+.+.|||||+... ..+..++..+|.+|+|++....-...+...++.+.+.+.+.+ +++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 467899999999655 567788999999999998876444455566666666676654 799999864
No 260
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.71 E-value=0.061 Score=52.35 Aligned_cols=24 Identities=8% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++|+|++|+|||||++.|....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999997753
No 261
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.59 E-value=0.068 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-..|+++|++|+|||||++.|..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 3345799999999999999999944
No 262
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.29 E-value=0.27 Score=50.61 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=44.5
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHH---H---cCCCceE-EEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA---L---GERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~---~---~~~~p~i-lviNKiD~~ 163 (843)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-...+..+++.+ . ..+.+++ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 5688999999997653 356778899999999998653322333333322 2 2356665 799999854
No 263
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.28 E-value=0.13 Score=53.17 Aligned_cols=65 Identities=17% Similarity=0.140 Sum_probs=48.6
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+.|||||+... ..+..++..+|.+|+|+.....-...+...++.+...+.+.+ +++|+.|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998665 567788899999999998765444455556666655566555 799999854
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.23 E-value=0.065 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++|+|+.|+|||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999997653
No 265
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.15 E-value=0.1 Score=50.24 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
....|+++|++|+|||||...|....|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 346799999999999999999966544
No 266
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.04 E-value=0.089 Score=55.88 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.++++|++|+|||||+++|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHST
T ss_pred eEEEECCCCCcHHHHHHHhcc
Confidence 589999999999999999944
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.04 E-value=0.12 Score=51.57 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-..|+|+|++|+|||||++.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999954
No 268
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.04 E-value=0.099 Score=43.23 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=53.7
Q ss_pred EEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEe
Q 003165 731 MVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFP 795 (843)
Q Consensus 731 ~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
...++++-..+|+|...|.+..+.|.+.+..+ ...++..+|..+.-.|...|+.+|+|++.+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 46788899999999999999999999988754 588999999999999999999999999754
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.87 E-value=0.09 Score=50.12 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|.|.+|+||||+.+.|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965543
No 270
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.63 E-value=0.088 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..++|+|+.|+|||||++.|....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999996543
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.63 E-value=0.092 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..++|+|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 368999999999999999997654
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.62 E-value=0.11 Score=51.41 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=23.1
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
+..+|... .-..|+|+|.+|+|||||++.|....|.
T Consensus 20 ~~~~m~~~-~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 20 FQSMMTGE-PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred HHhhhcCC-CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 34455532 3457999999999999999999665543
No 273
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.60 E-value=0.51 Score=50.48 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=33.3
Q ss_pred CcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
+++++|+-...-....++..+..+.+.++|+. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48899988776666777888888889999986 799998754
No 274
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=91.57 E-value=0.57 Score=41.71 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=37.5
Q ss_pred CcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 390 GRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 390 g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|+ +..+||.+|+|++|+.| ++ +. ...+|.+|.. +.+.+++|.+||-|++.
T Consensus 48 gp-vivGrVe~G~LK~G~~V----Pg----~~---~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 48 KD-VIIGTVESGMIGVGFKV----KG----PS---GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EE-EEEEEEEEEEEETTCEE----EC----SS---CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred CC-eeEEEEeEEEEcCCCCc----CC----Cc---eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 44 77889999999999998 12 10 0146666664 56789999999999885
No 275
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.49 E-value=0.2 Score=52.67 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=50.9
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+.|||||+..... ......+.+|++|+|+.+...-.......++.+...+.+++ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 5678999999976554 34455678999999999877655666677777777888765 799999965
No 276
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.48 E-value=0.22 Score=52.02 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=49.9
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+.|||||+..... .....++.+|++|+|+.+...-.......++.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5789999999976543 23344568999999999877655666677777777788877 799999965
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.39 E-value=0.11 Score=49.70 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|+|+|++|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999955443
No 278
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.24 E-value=0.12 Score=51.30 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.-+-|+|+|++|+|||||+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999987643
No 279
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.17 E-value=0.12 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++.++|+|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999764
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.04 E-value=0.11 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-..++|+|+.|+|||||++.|....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999997644
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.92 E-value=0.12 Score=50.79 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998754
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.91 E-value=0.13 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..++|+|+.|+|||||++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999997754
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.89 E-value=0.12 Score=49.27 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-..++++|+.|+|||||++.|....
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999997654
No 284
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.85 E-value=0.14 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+|.|.+||||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36899999999999999999 5544
No 285
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.75 E-value=0.13 Score=52.38 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCc-eEEEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p-~ilviNKiD~ 162 (843)
..+.+.|||||+..+. .+..++..+|.+|+|+++...-...+..+.+.+...+.+ +.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4678999999986654 566788999999999998653333444555555566665 4579999983
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.70 E-value=0.15 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++-++|+|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567899999999999999999764
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.70 E-value=0.15 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|+|+|+.|||||||++.|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999654
No 288
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.63 E-value=0.38 Score=50.92 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+.|||||+...... .....+.+|++|+|+.+...-..+....++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 56799999999766543 3345578999999999887766777777777777788766 789999964
No 289
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.61 E-value=0.23 Score=50.83 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=47.3
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCC---------CceEEEEECCccc
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~---------~p~ilviNKiD~~ 163 (843)
.+.+.|||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 57899999999554 47788889999999999987644444555555554433 3456899999853
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.58 E-value=0.12 Score=49.71 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
.-++++|++|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999986
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.54 E-value=0.14 Score=50.96 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+-|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3568999999999999999997654
No 292
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.42 E-value=0.17 Score=50.00 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..++|+++|.+|+||||+...|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999966544
No 293
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.42 E-value=0.082 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|+|+|.+|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999653
No 294
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.34 E-value=0.15 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC
Q 003165 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~ 133 (843)
.+.+.|||||+.. ...+..++..+|.+|+|+....
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 5789999999975 5667889999999999998763
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.32 E-value=0.19 Score=49.00 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.|+|.|.+||||||+...|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965544
No 296
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.18 E-value=0.18 Score=50.77 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+...|+|.|.+||||||++..|....|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999966554
No 297
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.17 E-value=0.19 Score=52.25 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 38 e~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 35899999999999999999
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.15 E-value=0.15 Score=50.30 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+|+|+|.+|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999965
No 299
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.11 E-value=0.13 Score=58.40 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+|.++|.+|+||||+..+|....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999996543
No 300
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.03 E-value=0.17 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|+|+|++|||||||++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999654
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.92 E-value=0.18 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.|+|+|.+|||||||+..|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999966544
No 302
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.92 E-value=0.23 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.90 E-value=0.18 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|+|.|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999996543
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.81 E-value=0.17 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|++|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999954
No 305
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.79 E-value=0.16 Score=51.42 Aligned_cols=19 Identities=42% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 32 ~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 306
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.79 E-value=0.19 Score=51.39 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
...|+|+|++|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3579999999999999999997555543
No 307
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.72 E-value=0.15 Score=52.06 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|||||||++.|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 308
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.71 E-value=0.47 Score=49.83 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=45.7
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHc------CCCceE-EEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~------~~~p~i-lviNKiD~~ 163 (843)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-.......++.+.. .+++++ +++|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3578999999997654 34567778999999999876444444444443332 366655 799999954
No 309
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.69 E-value=0.4 Score=49.46 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=47.1
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcC--CCceEEEEECCccc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~--~~p~ilviNKiD~~ 163 (843)
..+.+.|||||+..+ ..+..++..+|.+|+|+.....-......+++.+... +.++.+++|+.++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 457899999999663 4567788889999999998653333344555555555 34667899999644
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.69 E-value=0.11 Score=52.60 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH-Hh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV-AA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll-~~ 42 (843)
..++|+|+.|+|||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999996 43
No 311
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.56 E-value=0.18 Score=49.96 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+.|+|+|++|||||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999997655
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.48 E-value=0.26 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999654
No 313
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.43 E-value=0.21 Score=48.31 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999966544
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.33 E-value=0.26 Score=48.47 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...+.|+|.|.+||||||++..|....|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999976554
No 315
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.33 E-value=0.17 Score=51.85 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|+.|+|||||++.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999943
No 316
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.22 E-value=0.2 Score=49.54 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999943
No 317
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.22 E-value=0.55 Score=49.13 Aligned_cols=57 Identities=5% Similarity=0.024 Sum_probs=40.0
Q ss_pred CCcccHHHHHHHhhccCcEEEEecCCCcccccHHHHH----HHH---H-cCCCceEEEEEC-Cccc
Q 003165 107 GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQA---L-GERIRPVLTVNK-MDRC 163 (843)
Q Consensus 107 Gh~df~~e~~~~l~~~D~ailVvda~~gv~~qt~~~l----~~~---~-~~~~p~ilviNK-iD~~ 163 (843)
|+..+......+...+|++|+|||+++--....+.-+ ..+ . ..+.|++|+.|| -|.+
T Consensus 196 GQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 196 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp -CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 5677888889999999999999999875322233211 111 1 257899999997 5776
No 318
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.10 E-value=0.21 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.|++.|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999965
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.03 E-value=0.22 Score=47.87 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
++|+|+|.+|+||||+...|....|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999965444
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.02 E-value=0.23 Score=49.13 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 15 ~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.......|+|+|.+|+|||||++.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3345568999999999999999999553
No 321
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.02 E-value=0.18 Score=50.41 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++|+|+.|+|||||++.|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999664
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.99 E-value=0.23 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+|+|++|+||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999976544
No 323
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.93 E-value=0.21 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
-..|+|+|+.|||||||++.|....|.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 356999999999999999999665443
No 324
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.93 E-value=0.15 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|.|.+|+||||+...|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 325
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.91 E-value=0.21 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.++|+|+.|+|||||+..|....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999997643
No 326
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.88 E-value=0.19 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-++++++|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999553
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.87 E-value=0.22 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-..++|+|+.|+|||||++.|+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3457999999999999999999763
No 328
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.77 E-value=3.5 Score=43.83 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...++|.+.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45578999999999999999999544
No 329
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.55 E-value=0.2 Score=51.97 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 33 e~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 330
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.50 E-value=0.39 Score=49.05 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=24.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
....+|+|.|.+||||||++..|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35578999999999999999999765543
No 331
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.48 E-value=0.27 Score=48.19 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|+|.|.+||||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999966544
No 332
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.46 E-value=0.2 Score=51.76 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
-.++|+|+.|+|||||++.|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.45 E-value=0.3 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..-..++|+|++|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34457999999999999999999764
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.44 E-value=0.23 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 35 e~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 335
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.44 E-value=0.28 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|.+.|.+|+||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999966543
No 336
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.41 E-value=0.23 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++++|++|+|||||+++|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 36899999999999999999653
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.38 E-value=0.23 Score=50.78 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 338
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.37 E-value=0.21 Score=52.24 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|||||||++.|
T Consensus 36 ~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 339
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.35 E-value=0.22 Score=50.04 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 340
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.32 E-value=0.23 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.++|+|+.|+|||||++.|..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999943
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.23 E-value=0.31 Score=47.06 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|+++|.+||||||+...|....|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965444
No 342
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.21 E-value=0.31 Score=52.02 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-..|+|+|+.|||||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456799999999999999999954
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.18 E-value=0.3 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
+|+|.|.+||||||++..|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999765543
No 344
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.12 E-value=0.22 Score=50.89 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 33 e~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.10 E-value=0.3 Score=48.63 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
+|+|.|.+||||||+++.|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999665553
No 346
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.03 E-value=0.24 Score=50.87 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 36 e~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 347
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.00 E-value=0.36 Score=46.81 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|++.|.+|+||||+...|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999965443
No 348
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.98 E-value=0.34 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+..+|+++|.+|+||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999655
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.81 E-value=0.25 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 350
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.81 E-value=0.37 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|+|+|+.|||||||+++|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999654
No 351
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.79 E-value=0.26 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 51 ei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHH
Confidence 36899999999999999999
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.79 E-value=0.31 Score=46.99 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..++|++.|.+|+||||++..|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999965543
No 353
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.68 E-value=0.25 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll 40 (843)
.++|+|+.|+|||||++.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999993
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.60 E-value=0.28 Score=47.42 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|+|.|.+||||||+++.|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999996543
No 355
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.58 E-value=0.29 Score=48.90 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=26.5
Q ss_pred HHHHHhhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 6 ~~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+.+.+++. ....-..++|+|++|+|||||+..|...
T Consensus 11 ~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 11 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345555553 2233346899999999999999999653
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.57 E-value=0.3 Score=48.32 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.|+|.|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999543
No 357
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.57 E-value=0.27 Score=49.91 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999995
No 358
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.54 E-value=0.32 Score=47.92 Aligned_cols=26 Identities=27% Similarity=0.106 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.-..|+|+|.+|+|||||...|....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999995543
No 359
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.49 E-value=0.28 Score=50.74 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
-.++|+|+.|+|||||++.|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.49 E-value=0.36 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+||||||+...|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 361
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.46 E-value=0.28 Score=50.48 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 28 ~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999999999
No 362
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.39 E-value=1.1 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+-|.++|.+||||||+..+|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999543
No 363
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.13 E-value=0.37 Score=45.82 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.||+|.|.+||||||+...|-...|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456999999999999999999855444
No 364
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.10 E-value=0.29 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 34 e~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 365
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.10 E-value=0.38 Score=46.38 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+|+.|+|||||+++|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977544
No 366
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.10 E-value=1.6 Score=43.37 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCCcc--cH---HHHHHHhhccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 97 EYLINLIDSPGHVD--FS---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d--f~---~e~~~~l~~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+.+.||||||... .. .....+....+.+|+|+++..+-..++...++.+...+.+++ +++|+.|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 57899999998653 11 111111122245888888765444455555566666777766 799999854
No 367
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.09 E-value=0.3 Score=51.20 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 49 ~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999999999
No 368
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.01 E-value=0.3 Score=50.94 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 46 e~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.98 E-value=0.28 Score=46.16 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-.+++++|++|+|||||+.++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999653
No 370
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.96 E-value=0.29 Score=50.54 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.94 E-value=0.34 Score=51.72 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++..++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678999999999999999999865
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.88 E-value=0.39 Score=49.41 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999976544
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.85 E-value=0.44 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.....|+|+|..|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999965
No 374
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.84 E-value=0.41 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
....|+|.|.+||||||+.+.|-...|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999966555
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.83 E-value=0.39 Score=49.34 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=22.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
...|+|+|+.|||||||+..|....|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357999999999999999999755453
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.78 E-value=0.48 Score=45.81 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.|++.|.+||||||+...|....|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999966544
No 377
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.75 E-value=0.37 Score=51.48 Aligned_cols=26 Identities=27% Similarity=0.167 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...-|+|+|++|||||||++.|....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999999999995543
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.54 E-value=0.3 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++|+|+.|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999653
No 379
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.52 E-value=0.3 Score=55.83 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+++|+|+.|||||||+++|+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999543
No 380
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.51 E-value=0.64 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.+.|++|+|||||+.++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 381
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.46 E-value=0.44 Score=46.93 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|.|.+||||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999966543
No 382
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.44 E-value=1.2 Score=46.89 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++.+.|++|+|||||+.+|...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 48999999999999999999654
No 383
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.40 E-value=0.43 Score=47.69 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+++|.+||||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999966544
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.39 E-value=0.33 Score=46.68 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=17.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|++.|.+||||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999965443
No 385
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.29 E-value=0.46 Score=50.07 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=22.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.....|+|+|++|+|||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998553
No 386
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.25 E-value=0.54 Score=47.25 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
.+.+.|.|+|++||||+|.+..|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 456788999999999999999997776643
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.23 E-value=0.39 Score=45.69 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|.|.+||||||+...|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965444
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.14 E-value=0.42 Score=47.81 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+|+|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976554
No 389
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.05 E-value=0.48 Score=50.30 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..-..|+|+|+.|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999654
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.00 E-value=0.47 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+-..|+++|.+|+||||+...|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999554
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.97 E-value=0.29 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++|+|+.|+|||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999543
No 392
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.91 E-value=0.39 Score=47.12 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|+|.|.+||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999443
No 393
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.84 E-value=0.38 Score=49.89 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~L 39 (843)
.++|+|+.|+|||||++.|
T Consensus 32 ~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 394
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.73 E-value=0.54 Score=46.16 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
....|+|.|.+|+||||+...|....|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999966544
No 395
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.70 E-value=0.36 Score=52.50 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
-.++|+|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 358999999999999999994
No 396
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.65 E-value=2.4 Score=45.69 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.|.|++|+|||||+.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999654
No 397
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.61 E-value=0.42 Score=46.15 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
++|+|+|.+|+||||+...|....|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999966544
No 398
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.61 E-value=0.41 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 65 e~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 399
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.55 E-value=0.51 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|+|.|.+||||||+...|-...|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965444
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.55 E-value=0.51 Score=46.94 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|+|.|.+||||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976544
No 401
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=85.52 E-value=0.94 Score=52.71 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=33.3
Q ss_pred ccCcEEEEecCCCcccccHHHHHHHHHcCCCceE-EEEECCccc
Q 003165 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 121 ~~D~ailVvda~~gv~~qt~~~l~~~~~~~~p~i-lviNKiD~~ 163 (843)
.+|.+++|+.........+...+..+...+++.. +|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 4688999988776666677777888888888754 789998853
No 402
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.52 E-value=0.46 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.+|+|+.|+|||||+++|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999997643
No 403
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.45 E-value=0.39 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
-.++|+|+.|+|||||++.|..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3589999999999999999943
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.40 E-value=0.43 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999954
No 405
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.37 E-value=1.3 Score=45.10 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=55.2
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEee
Q 003165 726 LEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQ 796 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
----|++.|++|.++.+++++.|.+ -|.|..++..++ +.+...+.+|-.---.+...|++.|+|+|...
T Consensus 181 ~ra~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 181 KFEKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp EECEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eEeeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 3346889999999999999999954 588887775442 35677889998866678999999999999764
No 406
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.33 E-value=0.43 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+|+|+.|+|||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999764
No 407
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.14 E-value=0.52 Score=46.93 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
+|.++|++||||+|.+..|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58899999999999999998776654
No 408
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.07 E-value=0.26 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.|+|.|..||||||+++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999996543
No 409
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.04 E-value=4.2 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.+.|++|+|||||+.++...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999654
No 410
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.01 E-value=0.5 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+.|+|.|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999553
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.96 E-value=0.41 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...++|+|+.|+|||||++.|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996543
No 412
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.87 E-value=0.81 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999765
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.77 E-value=0.52 Score=45.35 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|++.|..|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999543
No 414
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.56 E-value=0.43 Score=51.75 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
-.++|+|+.|+|||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358999999999999999994
No 415
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.53 E-value=3.8 Score=43.06 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|.|.|++|+|||||+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999554
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.47 E-value=0.61 Score=47.09 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=23.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...+|+++|.+|+||||+...|....+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999966544
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.45 E-value=0.6 Score=48.88 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHH
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll 40 (843)
..+.|+|.|.+||||||+.+.|-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999995
No 418
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.44 E-value=0.44 Score=51.80 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 358999999999999999994
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=84.41 E-value=0.61 Score=47.87 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|+++|.+||||||+...|....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999976543
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.40 E-value=0.52 Score=48.48 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
-.+|+|+|.+|+||||+...|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999966544
No 421
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=84.37 E-value=0.32 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|+.|+|||||++.|..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4689999999999999999943
No 422
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.28 E-value=0.59 Score=48.73 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+++|....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 459999999999999999995543
No 423
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.27 E-value=0.55 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|++.|.+||||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999654
No 424
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.23 E-value=0.82 Score=44.76 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+++.+.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999654
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.22 E-value=0.59 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..|+|.|..||||||+.+.|-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999843
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.20 E-value=0.46 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||++.|..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 3589999999999999999943
No 427
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.13 E-value=3 Score=47.49 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.+.+.|++|+|||||+.++....+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999976653
No 428
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.02 E-value=0.85 Score=45.56 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.|.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999654
No 429
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=83.94 E-value=0.66 Score=48.72 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
....|.++|.+||||||++..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 430
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.84 E-value=0.63 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.+.++|++|+|||||+.++....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999996543
No 431
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.84 E-value=0.48 Score=51.79 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 358999999999999999994
No 432
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.83 E-value=0.49 Score=51.78 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll 40 (843)
.++++|+.|+|||||++.|.
T Consensus 31 ~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 58999999999999999993
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.83 E-value=0.49 Score=51.69 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|+.|+|||||++.|..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999999943
No 434
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.80 E-value=0.76 Score=45.76 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHhhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 6 ~~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+.+.+++. ....-..++|+|++|+|||||+..|..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345666654 222335689999999999999999964
No 435
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.78 E-value=0.52 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHH
Q 003165 21 NMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.|++.|..||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999944
No 436
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.72 E-value=0.59 Score=51.91 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 8 GLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 8 ~~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.+++. ..-..|+|+|+.|||||||+++|+...
T Consensus 158 ~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3455533 233468999999999999999997653
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.67 E-value=0.77 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.+.|++|+|||||+.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999654
No 438
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.66 E-value=0.73 Score=45.79 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=24.6
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.+.....+-+++.+.|++|+||||++.+|...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3344443223357999999999999999999664
No 439
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.50 E-value=0.81 Score=44.98 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|++.|.+||||||+.+.|-...|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567899999999999999999965434
No 440
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.35 E-value=0.72 Score=46.02 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|++.|.+||||||+...|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 441
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.16 E-value=2 Score=39.75 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
.-.+|.+.|.+|+|||+++.++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999844
No 442
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.93 E-value=2 Score=44.99 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
....++.+.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999988554
No 443
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.84 E-value=0.76 Score=46.11 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|+|.|.+||||||+++.|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999966544
No 444
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.76 E-value=1.2 Score=48.12 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.8
Q ss_pred HHHhhhc--ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 8 GLRRIMD--FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 8 ~~~~~~~--~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+..++. -...-+.+.|.|++|+|||||+.++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4455544 2233457899999999999999999764
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.72 E-value=1 Score=44.71 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.+.|.|++|+|||||+.++....
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999996543
No 446
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.57 E-value=0.57 Score=47.33 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+-..|+|.|..|||||||++.|..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999833
No 447
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=82.28 E-value=1.6 Score=44.06 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=54.4
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
--|++.|.+|.++.|++++.|. .-|.|..++-.++ +.+...+.+|-.---.+.+.|++.|+|.|.+..
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 3578999999999999999994 4578887775442 356778899987666788999999999997654
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.22 E-value=0.63 Score=51.13 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
-.++|+|+.|+|||||++.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 368999999999999999994
No 449
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=82.16 E-value=0.42 Score=51.68 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|+|||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 358999999999999999994
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.03 E-value=0.82 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.+.++|++|+|||||+.+|....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 469999999999999999996543
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.02 E-value=0.93 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-..|+++|.+|+||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999854
No 452
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.91 E-value=0.7 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999764
No 453
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=81.83 E-value=1.1 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..-+.++++|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999999653
No 454
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=81.67 E-value=2.5 Score=36.53 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=47.0
Q ss_pred ecCCCCcceeeeeeEeeEEecCCEEEEcCCCCCCCCccccceeeeceEEEEecCceeeeCcccCCCeEEEe
Q 003165 385 PASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 385 ~~~~~g~~l~~~RV~SGtL~~g~~v~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
..+..|. +|=|+|.+|+++++..+++++.+ .-.++-++.+|. +...+|.++.+|.=|+|.
T Consensus 16 ~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLk----r~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 16 KVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLK----RYKDDVREVAQGYECGLT 75 (99)
T ss_dssp CCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEE----CSSSCCSCCBTTCEEEEE
T ss_pred EcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhc----ccccccceECCCcEEEEE
Confidence 3355676 99999999999999999998522 234455777776 467789999999999985
No 455
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.62 E-value=0.92 Score=45.86 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|+|+|.+|+||||+...|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999976555
No 456
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=81.52 E-value=0.74 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|+|+.|+|||||++.|...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999999654
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.50 E-value=3.2 Score=54.52 Aligned_cols=35 Identities=29% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHhhhc--ccCCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 9 LRRIMD--FKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 9 ~~~~~~--~~~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+..++. -..+-++|.+.|++|+|||+|+-++...+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455544 23456799999999999999999997653
No 458
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.44 E-value=1.2 Score=44.10 Aligned_cols=36 Identities=17% Similarity=0.008 Sum_probs=26.6
Q ss_pred HHHHHhhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 6 ~~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
...+.+++. .-..-..++|+|++|+|||||+..|..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345666664 333334689999999999999999965
No 459
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=81.14 E-value=0.94 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+|.|++|+||||+.+.|....|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999965544
No 460
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.00 E-value=1 Score=48.62 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
....+|+++|.+|+||||+...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 456799999999999999999886543
No 461
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.72 E-value=0.87 Score=48.85 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..++++.|++|+|||||+..+....+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46799999999999999999966543
No 462
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.68 E-value=1.2 Score=46.18 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...+++.+.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999995543
No 463
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.62 E-value=0.95 Score=46.27 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.++|.+.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4679999999999999999995543
No 464
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.56 E-value=0.97 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999966544
No 465
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=80.49 E-value=0.42 Score=51.83 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|+|||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999994
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=80.34 E-value=2.4 Score=46.20 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=27.8
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCC
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.+.|||||. .....+..++..||.+++|+....
T Consensus 258 ~~yD~VIID~p~--~~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPF--SLEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCC--CCCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCC--CCCHHHHHHHHHCCEEEEEecCCc
Confidence 367889999994 344577788899999999987654
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.16 E-value=0.99 Score=48.80 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.++|+|+.|+|||||++.|....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999997764
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=80.02 E-value=0.87 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|+|+.|+|||||++.|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999999654
No 469
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.85 E-value=1.3 Score=46.28 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=24.3
Q ss_pred HHhhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 9 ~~~~~~~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+..+...-..-.-++|+|++|+|||||+..|...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4444333333346899999999999999999553
No 470
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=79.80 E-value=1.2 Score=44.78 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=27.1
Q ss_pred HHHHHhhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 6 AEGLRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 6 ~~~~~~~~~-~~~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+.+.+++. -...-..++|+|++|+|||||+..|...
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345666664 2233346899999999999999999653
No 471
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.65 E-value=1.2 Score=45.12 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.-..|+|.|.+|+||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999996554
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=79.58 E-value=1.4 Score=46.72 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+-|+|+|+.|+|||||...|....+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 345689999999999999999976644
No 473
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.17 E-value=1.3 Score=47.68 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|++|+|||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999977654
No 474
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.88 E-value=7.6 Score=40.85 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=18.2
Q ss_pred eeEE-EEEeCCCCCHHHHHHHHHHhc
Q 003165 19 IRNM-SVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 ~rni-~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..++ .+.|++|+||||++.++....
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3344 445669999999999995543
No 475
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.87 E-value=1.4 Score=46.29 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+.|.+.|++|+|||||+.++....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45689999999999999999996543
No 476
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=78.79 E-value=1.9 Score=46.72 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=30.5
Q ss_pred HhhccCcEEEEecCCCcccccHHH---HHHHHHcCCCceEEEEECCccc
Q 003165 118 ALRITDGALVVVDCIEGVCVQTET---VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 118 ~l~~~D~ailVvda~~gv~~qt~~---~l~~~~~~~~p~ilviNKiD~~ 163 (843)
.+..+|.+++| ||.. ....... .+..++..++|++||+||+|+.
T Consensus 127 i~anvD~v~iv-~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIV-SAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEE-EEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEE-EeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 46788998876 5554 3333333 3344567899999999999986
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.61 E-value=1.1 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.-.+|+|+.|+||||++++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999976543
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.48 E-value=1.6 Score=47.06 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.|.|+.|+|||||+.++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 479
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.32 E-value=1.7 Score=43.78 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=26.6
Q ss_pred CcEEEEecCCCcccccHHHHHHHHHcCCCceEEEEECCccc
Q 003165 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~qt~~~l~~~~~~~~p~ilviNKiD~~ 163 (843)
+.-+++||-..-+.....+.++.+...+++++++.-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 45688889665443333344555555688988888877743
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.17 E-value=1.1 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|.+.|.+|+||||+...|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999653
No 481
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.81 E-value=1.5 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999976654
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.40 E-value=1.3 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.++|+|+.|+|||||++.|....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 468999999999999999997654
No 483
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.28 E-value=1.7 Score=46.20 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=25.4
Q ss_pred HHhhhcccC-CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 9 LRRIMDFKH-NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 9 ~~~~~~~~~-~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+..+...+. ...++.+.|++|+|||||+.++...
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344444443 4568999999999999999999653
No 484
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=77.05 E-value=1.1 Score=52.06 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|+.|+|||||++.|..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999944
No 485
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=76.99 E-value=8.8 Score=42.77 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.++.+.|++|+|||||+..+....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 34789999999999999999996544
No 486
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=76.86 E-value=1.2 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||++.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999944
No 487
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.70 E-value=1.2 Score=51.65 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.59 E-value=1.4 Score=45.69 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|++|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 489
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=76.41 E-value=1.3 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003165 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 ni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4489999999999999998653
No 490
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.22 E-value=1.6 Score=46.86 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+..++.+.|++|+|||||+.+|..
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 445599999999999999999976
No 491
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=76.22 E-value=1.7 Score=50.01 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+-.+|+++|..|||||||.+.|....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34589999999999999999996543
No 492
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=75.98 E-value=0.75 Score=46.88 Aligned_cols=67 Identities=9% Similarity=-0.040 Sum_probs=56.7
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeechhhcCchHHHhhhCCCceEeee
Q 003165 728 PVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
.-|++.|++|.++.|++++.|.+-.|.|.+++-.+ + +.+.+.+|-.---.+.+.|++.|+|.|...+
T Consensus 172 a~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~--~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 172 AHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQ--Q-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp ECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSS--B-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccC--C-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 35788999999999999999999889998877554 3 6778899988777889999999999997654
No 493
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.80 E-value=0.95 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.+.|+|.|..|+||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998833
No 494
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=75.66 E-value=2.5 Score=40.73 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
+-|.|.|++|+|||||+-.|+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.62 E-value=1.7 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|+|.|..|+||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999996654
No 496
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=75.59 E-value=1.3 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
=..++++|+.|+|||||++.|..
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999999943
No 497
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=75.33 E-value=1.3 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003165 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rni~iiG~~~~GKTTL~~~Ll~ 41 (843)
-.++|+|+.|+|||||++.|..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3689999999999999999944
No 498
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.29 E-value=0.89 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 ~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|+|.|.+||||||+++.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999553
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.09 E-value=1.8 Score=44.04 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003165 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~~rni~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|.+.|++|+|||+|+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999554
No 500
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=74.97 E-value=3.4 Score=45.41 Aligned_cols=65 Identities=20% Similarity=0.186 Sum_probs=40.3
Q ss_pred CceEEEEEeCCCCcccHHHHHHHhhccCcEEEEecCCCcc-------cccHHHHHHHHHcCCCc-----eEEEEECCcc
Q 003165 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR-----PVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~qt~~~l~~~~~~~~p-----~ilviNKiD~ 162 (843)
..+.+.|||||...+ ..+..++..+|.+|+|+....-- ......+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 367899999999765 45778889999999999764310 01222334444444432 2458999883
Done!