BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003166
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/846 (62%), Positives = 661/846 (78%), Gaps = 7/846 (0%)
Query: 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT +++R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 QDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALR 120
+DE ERGITIKST ISLY EM+D +K + + GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQK 180
+TDGALVVVD IEGVCVQTETVLRQALGERI+PV+ +NK+DR LELQV E+ YQTF +
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 180
Query: 181 VIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240
+E+ NVI++TY D +LGDVQVYP +GTVAF +GLHGWAFT+ FA YA KFGVD++KM
Sbjct: 181 TVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240
Query: 241 MERLWGENFFDPATRKWTSRNT---GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM 297
M+RLWG++FF+P T+KWT+++T G P +R F F +PI ++ MN +KD++ +
Sbjct: 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKP-LERAFNMFILDPIFRLFTAIMNFKKDEIPVL 299
Query: 298 LQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEG 357
L+KL + +K +EK+L GKAL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEG
Sbjct: 300 LEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEG 359
Query: 358 PLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYV 417
P DDA AI+NCDP+ LMLYVSKM+P SDKGRF+AFGRVF+G V +G KVRI GPNYV
Sbjct: 360 PADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYV 419
Query: 418 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHP 477
PG+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQ++ K TLT + AH
Sbjct: 420 PGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHN 477
Query: 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 537
++ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ M ESGEHI+AG GELH
Sbjct: 478 MKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELH 537
Query: 538 LEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEG 597
LEICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR+Y++A P++E
Sbjct: 538 LEICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEE 596
Query: 598 LAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL 657
++ AI++G I PRDD K R++I+++++GWD A+KIWCFGP+ GPN+V+D K VQYL
Sbjct: 597 VSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYL 656
Query: 658 NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717
+EIKDSVVA FQWA+KEG + E MR + + DV LHADAIHRGGGQ+IPT RR YA
Sbjct: 657 HEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAG 716
Query: 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVE 777
L A P++ EPV+LVEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL+ +KAYLPV E
Sbjct: 717 FLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNE 776
Query: 778 SFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLS 837
SFGF+ LR AT GQAFPQ VFDHW + SDPL+P S+A ++VL RKR G+KE++
Sbjct: 777 SFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQ 836
Query: 838 EYEDKL 843
EY DKL
Sbjct: 837 EYYDKL 842
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 1105 bits (2858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/846 (61%), Positives = 660/846 (78%), Gaps = 7/846 (0%)
Query: 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR 60
MV FT +++R +MD N+RNMSVIAHVDHGKSTLTDSLV AGII+ AG+ R TDTR
Sbjct: 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTR 60
Query: 61 QDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALR 120
+DE ERGITIKST ISLY EM+D +K + + GN +LINLIDSPGHVDFSSEVTAALR
Sbjct: 61 KDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALR 120
Query: 121 ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQK 180
+TDGALVVVD IEGVCVQTETVLRQALGERI+PV+ +NK+DR LELQV E+ YQTF +
Sbjct: 121 VTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFAR 180
Query: 181 VIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240
+E+ NVI++TY D +LGDVQVYP +GTVAF +GLHGWAFT+ FA YA KFGVD++KM
Sbjct: 181 TVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240
Query: 241 MERLWGENFFDPATRKWTSRNT---GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM 297
M+RLWG++FF+P T+KWT+++T G P +R F F +PI ++ MN +KD++ +
Sbjct: 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKP-LERAFNMFILDPIFRLFTAIMNFKKDEIPVL 299
Query: 298 LQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEG 357
L+KL + +K +EK+L GKAL+K VM+ +LPA+ ALLEM++ HLPSP TAQ YR E LYEG
Sbjct: 300 LEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEG 359
Query: 358 PLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYV 417
P DDA AI+NCDP+ LMLYVSKM+P SDKGRF+AFGRVF+G V +G KVRI GPNYV
Sbjct: 360 PADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYV 419
Query: 418 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHP 477
PG+K DL++K++QR V+ MG+ E ++D P GN + +VG+DQ++ K TLT + AH
Sbjct: 420 PGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHN 477
Query: 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 537
++ MKFSVSPVV+VAV+ K A+DLPKLVEGLKRL+KSDP V+ M ESGEHI+AG GELH
Sbjct: 478 MKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELH 537
Query: 538 LEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEG 597
LEICL+DL+ D G + S PVV++RETV +S +T +SKSPNKHNR+Y++A P++E
Sbjct: 538 LEICLQDLEHDH-AGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEE 596
Query: 598 LAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYL 657
++ AI++G I PRDD K R++I+++++GWD A+KIWCFGP+ GPN+V+D K VQYL
Sbjct: 597 VSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYL 656
Query: 658 NEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717
+EIKDSVVA FQWA+KEG + E MR + + DV LHADAI RGGGQ+IPT RR YA
Sbjct: 657 HEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIXRGGGQIIPTMRRATYAG 716
Query: 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVE 777
L A P++ EPV+LVEIQ PEQA+GGIYSVLN+KRG V E QRPGTPL+ +KAYLPV E
Sbjct: 717 FLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNE 776
Query: 778 SFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLS 837
SFGF+ LR AT GQAFPQ VFDHW + SDPL+P S+A ++VL RKR G+KE++
Sbjct: 777 SFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQ 836
Query: 838 EYEDKL 843
EY DKL
Sbjct: 837 EYYDKL 842
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 218/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 218/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ AE + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 218/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 226 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 271
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 272 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 321
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 322 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 377
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 378 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 437
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 438 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 495
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 496 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 530
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ AE + + F++ + +A+ +G
Sbjct: 531 -------KVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKG------------------- 564
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 565 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 622
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 623 ATDLRSKTQGRGSFVMFFDHY 643
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 42/149 (28%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLY 78
+RN+ + AH+D GK+T T+ ++ G IA
Sbjct: 7 LRNIGIAAHIDAGKTTTTERILYYTGRIA------------------------------- 35
Query: 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ 138
+T K +R IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV Q
Sbjct: 36 --VTTCFWKDHR---------INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQ 84
Query: 139 TETVLRQALGERIRPVLTVNKMDRCFLEL 167
+ETV RQA ++ + NKMD+ +L
Sbjct: 85 SETVWRQAEKYKVPRIAFANKMDKTGADL 113
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ DP V + E+G+ II+G GELHLEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 214/501 (42%), Gaps = 93/501 (18%)
Query: 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD 371
+G AL + +Q LL+ ++ +LPSP + EG + + + D
Sbjct: 259 FLGSALKNKGVQL-------LLDAVVDYLPSPLDIPPIK-GTTPEGEVVEIHP------D 304
Query: 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQR 431
P GPL K++ GR F RV+SG + +G V N G K+ V R
Sbjct: 305 PNGPLAALAFKIMADPYVGRL-TFIRVYSGTLTSGSYVY----NTTKGRKE-----RVAR 354
Query: 432 TVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSV-SPVVR 490
+ +E VE++ G+ A+VGL + IT + TL E DA + V PV+
Sbjct: 355 LLRMHANHREEVEELKAGDLGAVVGLKETITGD-TLVGE---DAPRVILESIEVPEPVID 410
Query: 491 VAVQCKVASDLPKLVEGLKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDF 549
VA++ K +D KL + L RLA+ P V + E+G II+G GEL LEI + L+ +F
Sbjct: 411 VAIEPKTKADQEKLSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREF 470
Query: 550 MGGAEIIKSDPVVSFRETVLE------KSCRTVMSKSPNKHNRLYMEARPLEEG--LAEA 601
A + K P V++RET+ + K R + H ++ +E P G A
Sbjct: 471 KVDANVGK--PQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNA 528
Query: 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIK 661
I G I P V+ I ++ GP P VVD+
Sbjct: 529 IVGGVIPKEYIPAVQKGI------------EEAMQSGPLIGFP--VVDI----------- 563
Query: 662 DSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTA 721
+ +G+ E + + F++ + +A+ +G
Sbjct: 564 -------KVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKG------------------- 597
Query: 722 KPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGF 781
P +LEP+ VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+
Sbjct: 598 DPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGY 655
Query: 782 SSTLRAATSGQAFPQCVFDHW 802
++ LR+ T G+ FDH+
Sbjct: 656 ATDLRSKTQGRGSFVMFFDHY 676
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 85/151 (56%), Gaps = 18/151 (11%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGIS 76
+RN+ + AH+D GK+T T+ ++ G I + EV D + E ERGITI + +
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
+++ ++ IN+ID+PGHVDF+ EV ++R+ DGA+VV D +GV
Sbjct: 72 CFWK----------------DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE 115
Query: 137 VQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
Q+ETV RQA ++ + NKMD+ +L
Sbjct: 116 PQSETVWRQAEKYKVPRIAFANKMDKTGADL 146
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 12/146 (8%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKMQAV 61
Query: 76 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
++Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RMFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 136 CVQTETVLRQALGERIRPVLTVNKMD 161
QT +A+ + + + +NK+D
Sbjct: 111 EAQTVANFWKAVEQDLVIIPVINKID 136
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 31/207 (14%)
Query: 371 DPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM--GPNYVPGE------KK 422
DP+ PL + +G AF R+F G+V G K+ +M G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKM 246
Query: 423 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMK 482
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---GEHIIAG-AGELHL 538
P+V + + +L + L++ A +D +V E S G G G LH+
Sbjct: 292 -PAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHM 350
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFR 565
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 136/512 (26%), Positives = 215/512 (41%), Gaps = 100/512 (19%)
Query: 331 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYAN-AIRNCDPEGPLMLYVSKMIPASDK 389
A+L+ +I +LPSP G LDD A R+ + P K+
Sbjct: 277 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 330
Query: 390 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 449
G F RV+SG V +G V N V ++ R V K+E +++V G
Sbjct: 331 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 380
Query: 450 NTVAMVGLDQYITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 507
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 381 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 434
Query: 508 LKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566
L RLAK DP V + EES + IIAG GELHL+I + ++ +F A + K P V++RE
Sbjct: 435 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 492
Query: 567 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILS 621
T+ +K S ++ + ++ PLE P +P
Sbjct: 493 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 531
Query: 622 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681
KG +++N+IK V+ G + + + E+
Sbjct: 532 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 561
Query: 682 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPVYLVEI 734
G + V D + LH + H A + + AKP LLEP+ VE+
Sbjct: 562 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 621
Query: 735 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 794
+ PE+ G + L+++RG + + Q I A +P+ E FG+++ LR+ T G+A
Sbjct: 622 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 679
Query: 795 PQCVFDHWDMMSSDPLEPGSQASQLVLDIRKR 826
F +D E S +Q V++ R +
Sbjct: 680 YTMEFLKYD-------EAPSNVAQAVIEARGK 704
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D + E ERGITI S +
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
++ K Y R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 71 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 121
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA ++ + VNKMDR
Sbjct: 122 QSETVWRQANKYKVPRIAFVNKMDR 146
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 12/146 (8%)
Query: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI 75
+ N+RN +IAHVDHGKSTL D L+ G I++ + ++ DT E ERGIT+K +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKRE-QLLDTLDVERERGITVKXQAV 61
Query: 76 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+Y+ D GN Y ++LID+PGHVDFS EV+ AL +GAL+++D +G+
Sbjct: 62 RXFYKAKD-----------GNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI 110
Query: 136 CVQTETVLRQALGERIRPVLTVNKMD 161
QT +A+ + + + +NK+D
Sbjct: 111 EAQTVANFWKAVEQDLVIIPVINKID 136
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 31/207 (14%)
Query: 371 DPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI--MGPNYVPGE------KK 422
DP+ PL + +G AF R+F G+V G K+ + G Y E K
Sbjct: 188 DPQKPLKALIFDSYYDPYRGAV-AFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKX 246
Query: 423 DLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMK 482
+ K V ++ + V D+ G+T+ T+ K P+ +
Sbjct: 247 TKFDKLSAGDVGYIAASIKDVRDIRIGDTI---------------THAKNPTKEPVPGFQ 291
Query: 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---GEHIIAG-AGELHL 538
P V + + +L + L++ A +D +V E S G G G LH
Sbjct: 292 -PAKPXVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEPESSPALGXGFRVGFLGLLHX 350
Query: 539 EICLKDLQDDFMGGAEIIKSDPVVSFR 565
EI + L+ ++ G +II + P V +R
Sbjct: 351 EIVQERLEREY--GVKIITTAPNVIYR 375
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 136/510 (26%), Positives = 214/510 (41%), Gaps = 100/510 (19%)
Query: 331 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYAN-AIRNCDPEGPLMLYVSKMIPASDK 389
A+L+ +I +LPSP G LDD A R+ + P K+
Sbjct: 276 AMLDAVIDYLPSPVDVPAIN------GILDDGKDTPAERHASDDEPFSALAFKIATDPFV 329
Query: 390 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCG 449
G F RV+SG V +G V N V ++ R V K+E +++V G
Sbjct: 330 GNL-TFFRVYSGVVNSGDTVL----NSVKAARERF-----GRIVQMHANKREEIKEVRAG 379
Query: 450 NTVAMVGLDQYITKNATLTNEKEVDAHPI--RAMKFSVSPVVRVAVQCKVASDLPKLVEG 507
+ A +GL +T TL + DA PI M+F PV+ +AV+ K +D K+
Sbjct: 380 DIAAAIGLKD-VTTGDTLCDP---DA-PIILERMEFP-EPVISIAVEPKTKADQEKMGLA 433
Query: 508 LKRLAKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566
L RLAK DP V + EES + IIAG GELHL+I + ++ +F A + K P V++RE
Sbjct: 434 LGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGK--PQVAYRE 491
Query: 567 TVLEKSC-----RTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILS 621
T+ +K S ++ + ++ PLE P +P
Sbjct: 492 TIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLE-------------PGSNP-------- 530
Query: 622 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681
KG +++N+IK V+ G + + + E+
Sbjct: 531 ------------------------------KGYEFINDIKGGVIPGEYIPAVDKGIQEQL 560
Query: 682 MRG--ICFEVCD--VVLHADAIHRGGGQ--VIPTARRVIYASQL-TAKPRLLEPVYLVEI 734
G + V D + LH + H A + + AKP LLEP+ VE+
Sbjct: 561 KAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEV 620
Query: 735 QAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 794
+ PE+ G + L+++RG + + Q I A +P+ E FG+++ LR+ T G+A
Sbjct: 621 ETPEENTGDVIGDLSRRRGML--KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRAS 678
Query: 795 PQCVFDHWDMMSSDPLEPGSQASQLVLDIR 824
F +D E S +Q V++ R
Sbjct: 679 YTMEFLKYD-------EAPSNVAQAVIEAR 701
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 11/145 (7%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ + AH+D GK+T T+ ++ G+ + EV D + E ERGITI S +
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
++ K Y R IN+ID+PGHVDF+ EV ++R+ DGA++V + GV
Sbjct: 70 FW---SGMAKQYEPHR------INIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQP 120
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA ++ + VNKMDR
Sbjct: 121 QSETVWRQANKYKVPRIAFVNKMDR 145
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA 110
Query: 138 QTETVLRQALGERIRPVLTVNKMD 161
QT A+ + V +NK+D
Sbjct: 111 QTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 12/144 (8%)
Query: 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISL 77
NIRN S+IAH+DHGKSTL+D ++ G ++ + ++ D+ E ERGITIK+ ++L
Sbjct: 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTL 61
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
Y+ +D G Y +N ID+PGHVDFS EV+ +L +GAL+VVD +GV
Sbjct: 62 DYKASD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEA 110
Query: 138 QTETVLRQALGERIRPVLTVNKMD 161
QT A+ + V +NK+D
Sbjct: 111 QTLANCYTAMEMDLEVVPVLNKID 134
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ + AHVD GK+T T+ ++ G+ + EV TD E ERGITI S ++
Sbjct: 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTT 73
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
++ K RG Q + Y +N+ID+PGHVDF+ EV +LR+ DGA+VV GV
Sbjct: 74 FW-------KGSRG--QYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEP 124
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
Q+ETV RQA + ++ VNKMDR
Sbjct: 125 QSETVWRQANKYGVPRIVYVNKMDR 149
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/493 (23%), Positives = 218/493 (44%), Gaps = 84/493 (17%)
Query: 332 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 391
+L+ +I +LP+P + + DD R+ D P K+ G
Sbjct: 281 VLDAVIDYLPAPT-----EIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGT 335
Query: 392 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 451
F RV+SG +++G V N V G+K+ V R V ++E +++V G+
Sbjct: 336 L-TFARVYSGVLSSGDSVL----NSVKGKKE-----RVGRMVQMHANQREEIKEVRAGDI 385
Query: 452 VAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511
A++G+ T + + EK + + M F PV+ VAV+ K +D K+ L +L
Sbjct: 386 AALIGMKDVTTGDTLCSIEKPI---ILERMDFP-EPVISVAVEPKTKADQEKMGIALGKL 441
Query: 512 AKSDPMV-VCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLE 570
A+ DP V + EESG+ II+G GELHL+I + ++ +F G E P V++RET+ +
Sbjct: 442 AQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGKPQVAYRETITK 499
Query: 571 -------KSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEE 623
K R + H + A ++E I +G + + +V ++ +E
Sbjct: 500 DNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDE--KGNITEGLVF---ENEVVGGVVPKE 554
Query: 624 FGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGF-----QWASKEGALA 678
+ + + KG++ ++K+ VVAG+ + +G+
Sbjct: 555 Y----------------------IPAIQKGIE--EQMKNGVVAGYPLIGLKATVFDGSYH 590
Query: 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPE 738
+ + + F++ + +GGG+V LEP+ VE+ PE
Sbjct: 591 DVDSNEMAFKIAASMATKQLAQKGGGKV-------------------LEPIMKVEVVTPE 631
Query: 739 QALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 798
+G + LN++RG + + M+ + I+A +P+ E FG+++ +R+ + G+A
Sbjct: 632 DYMGDVMGDLNRRRG-LIQGMEDTVSGKV-IRAEVPLGEMFGYATDVRSMSQGRASYSME 689
Query: 799 FDHWDMMSSDPLE 811
F + S+ +E
Sbjct: 690 FSKYAEAPSNIVE 702
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPATAQ---KYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 389 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL-----V 732
+ + ++ D H D+ A ++ + L + +PV L V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++++LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D + E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPATAQ---KYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 389 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL-----V 732
+ + ++ D H D+ A ++ + L + +PV L V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++++LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ ++AH+D GK+T T+ ++ G I + E D + E +RGITI S +
Sbjct: 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPATAQ---KYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 389 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL-----V 732
+ + ++ D H D+ A ++ + L + +PV L V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++++LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D + E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVD + EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 203/490 (41%), Gaps = 103/490 (21%)
Query: 332 LLEMMIFHLPSPATAQ---KYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASD 388
+L+ +I +LPSP + +R N P ++ A A + E + + P
Sbjct: 270 MLDAVIDYLPSPLDVKPIIGHRASN----PEEEVIAKA--DDSAEFAALAFKVMTDPYVG 323
Query: 389 KGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPC 448
K FF RV+SG + +G V+ N G+++ V R + ++ ++ V
Sbjct: 324 KLTFF---RVYSGTMTSGSYVK----NSTKGKRE-----RVGRLLQMHANSRQEIDTVYS 371
Query: 449 GNTVAMVGLDQYITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGL 508
G+ A VGL T + TL EK + + +M+F PV+ ++V+ K +D K+ + L
Sbjct: 372 GDIAAAVGLKDTGTGD-TLCGEK--NDIILESMEFP-EPVIHLSVEPKSKADQDKMTQAL 427
Query: 509 KRLAKSDPMVVCSM-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567
+L + DP EE+G+ II G GELHL+I + ++ +F E P+VS+RET
Sbjct: 428 VKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECNVGAPMVSYRET 485
Query: 568 VLEKSCRTVMSK------SPNKHNRLYMEARPLEEGLAEAIDDGRIG---PRDDPKVRSK 618
KS V K ++ +++E P E G ++ +G PR
Sbjct: 486 F--KSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPR-------- 535
Query: 619 ILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALA 678
E SV AG + A + G LA
Sbjct: 536 ----------------------------------------EYIPSVEAGLKDAMENGVLA 555
Query: 679 EENMRGICFEVCDVVLH-ADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYL-----V 732
+ + ++ D H D+ A ++ + L + +PV L V
Sbjct: 556 GYPLIDVKAKLYDGSYHDVDSSE--------MAFKIAASLALKEAAKKCDPVILEPMMKV 607
Query: 733 EIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792
I+ PE+ +G I + +RG V + P + AY+P+ E FG++++LR+ T G+
Sbjct: 608 TIEMPEEYMGDIMGDVTSRRGRV--DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGR 665
Query: 793 AFPQCVFDHW 802
FDH+
Sbjct: 666 GTYTMYFDHY 675
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 18/145 (12%)
Query: 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRQDEAERGITIKSTGISL 77
RN+ +IAH+D GK+T T+ ++ G I + E D + E +RGITI S +
Sbjct: 11 RNIGIIAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+E G R +N+ID+PGHVDF+ EV +LR+ DGA+ V+D GV
Sbjct: 71 AWE----------GHR------VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEP 114
Query: 138 QTETVLRQALGERIRPVLTVNKMDR 162
QTETV RQA + ++ VNKMD+
Sbjct: 115 QTETVWRQATTYGVPRIVFVNKMDK 139
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 83/153 (54%), Gaps = 22/153 (14%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD----EAERGITIKSTG 74
I N+ V+AHVD GK+TLT+SL+ +G I + G V TR D E +RGITI++
Sbjct: 2 IINIGVLAHVDAGKTTLTESLLYNSGAITE--LGSVDKGTTRTDNTLLERQRGITIQTGI 59
Query: 75 ISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG 134
S +E T +N+ID+PGH+DF +EV +L + DGA++++ +G
Sbjct: 60 TSFQWENTK----------------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG 103
Query: 135 VCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167
V QT + I + +NK+D+ ++L
Sbjct: 104 VQAQTRILFHALRKMGIPTIFFINKIDQNGIDL 136
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 28/151 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR--------MTDTRQDEAERGITIKS 72
++I+H D GK+TLT+ L+ G I ++AG V+ +D E ERGI++ +
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAI--QMAGSVKARKAARHATSDWMAMERERGISVTT 90
Query: 73 TGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI 132
+ + Y + ++NL+D+PGH DFS + L D ALVV+D
Sbjct: 91 SVMQFPY----------------RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAA 134
Query: 133 EGVCVQTETVLRQALGERIRPVLT-VNKMDR 162
+GV QT ++ R PV+T VNKMDR
Sbjct: 135 KGVEAQTRKLM-DVCRMRATPVMTFVNKMDR 164
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST 73
R ++I+H D GK+TLT+ L + AG I A +D + E +RGI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 74 GISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
Y+ +YLINL+D+PGH DF+ + L D AL V+D +
Sbjct: 74 VXQFPYK----------------DYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T L + R P+ T +NK DR
Sbjct: 118 GVEPRT-IKLXEVCRLRHTPIXTFINKXDR 146
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 27/132 (20%)
Query: 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERG 67
E R MDFK NI N+ + H+DHGK+TL+ L A A D + +RG
Sbjct: 10 EGRPHMDFK-NI-NLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRG 58
Query: 68 ITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALV 127
ITI D +++ E Y I L+D+PGH D V +A I D AL+
Sbjct: 59 ITI------------DIGFSAFKLEN----YRITLVDAPGHADLIRAVVSAADIIDLALI 102
Query: 128 VVDCIEGVCVQT 139
VVD EG QT
Sbjct: 103 VVDAKEGPKTQT 114
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D + E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T ++ + R P+LT +NK+DR
Sbjct: 118 GVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 24/150 (16%)
Query: 20 RNMSVIAHVDHGKSTLTDSL------VAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST 73
R ++I+H D GK+T+T+ + + AG + + +D + E +RGI+I ++
Sbjct: 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTS 73
Query: 74 GISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
+ Y ++ L+NL+D+PGH DFS + L D L+V+D +
Sbjct: 74 VMQFPY----------------HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAK 117
Query: 134 GVCVQTETVLRQALGERIRPVLT-VNKMDR 162
GV +T ++ + R P+LT +NK+DR
Sbjct: 118 GVEDRTRKLM-EVTRLRDTPILTFMNKLDR 146
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD---EAERGITIKSTGI 75
IR ++++ H GK+TLT++L+ G A+E G V T D EA+ T TG+
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTG--AKERRGRVEEGTTTTDYTPEAKLHRTTVRTGV 66
Query: 76 SLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
+ +RG R + L+D+PG+ DF E+ AL D ALV V GV
Sbjct: 67 APLL---------FRGHR------VFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV 111
Query: 136 CVQTETVLRQALGERIRPVLTVNKMDR 162
V TE A + ++ V K+D+
Sbjct: 112 QVGTERAWTVAERLGLPRMVVVTKLDK 138
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 487 PVVRVAVQCKVASDLPKLVEGLKRLAKSDP-MVVCSMEESGEHIIAGAGELHLEICLKDL 545
P V VA+ K +D +L E L++L + DP + + EE+GE ++ G GELHL + L
Sbjct: 381 PNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL 440
Query: 546 QDDFMGGAEIIKSDPVVSFRETV 568
QD G E+ S P V +RET+
Sbjct: 441 QDY---GVEVEFSVPKVPYRETI 460
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFG 780
A P LLEP+Y +++ AP++ +G + S L +RG + M++ G L + A +P+ E
Sbjct: 567 AHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRIL-GMEQEGA-LSVVHAEVPLAEVLE 624
Query: 781 FSSTLRAATSGQAFPQCVFDHW 802
+ L T G F H+
Sbjct: 625 YYKALPGLTGGAGAYTLEFSHY 646
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 41/165 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII-------AQEVAGDVR--------MTDTRQDEAE 65
N+ VI HVDHGKSTL L+ G I A+E A + + D ++E E
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERE 67
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+TI T + + +Y +ID+PGH DF + D A
Sbjct: 68 RGVTINLTFMRF----------------ETKKYFFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIE-----GVCVQTET----VLRQALGERIRPVLTVNKMD 161
++VV + G+ V+ +T +L + +G + ++ VNKMD
Sbjct: 112 ILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLD-QLIVAVNKMD 155
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 43/166 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRQDEAE 65
N+ VI HVDHGKSTL L+ G I +E + D ++E E
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + + +Y+ +ID+PGH DF + D A
Sbjct: 68 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 126 LVVVDCIEG---VCVQTETVLRQALG-------ERIRPVLTVNKMD 161
++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 112 ILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 155
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 43/166 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII---------------AQEVAGDVRMTDTRQDEAE 65
N+ VI HVDHGKSTL L+ G I +E + D ++E E
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI T + + +Y+ +ID+PGH DF + D A
Sbjct: 71 RGITIDLTFMKF----------------ETKKYVFTIIDAPGHRDFVKNMITGASQADAA 114
Query: 126 LVVVDCIEG---VCVQTETVLRQALG-------ERIRPVLTVNKMD 161
++VV +G + TE R+ L E+I ++ VNKMD
Sbjct: 115 ILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQI--IVAVNKMD 158
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-------ST 73
N+ ++ HVDHGK+TLT +L TDT +E RGITIK
Sbjct: 13 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIR 59
Query: 74 GISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
S + + + Y G ++ IDSPGH + + A + DGA++V+ E
Sbjct: 60 RCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAANE 119
Query: 134 GVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 183
C + +T + Q +G++ ++ NK++ VD E+A + ++++ E
Sbjct: 120 -PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIKE 165
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHYAH-----------VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 399 QTREHIL---LGRQVGVPYIIVFLNKC 422
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 115 QTREHIL---LGRQVGVPYIIVFLNKC 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 14 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 70
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 71 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 114
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 115 QTREHIL---LGRQVGVPYIIVFLNKC 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 69
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 70 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 113
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 114 QTREHIL---LGRQVGVPYIIVFLNKC 137
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 61
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 62 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 105
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 106 QTREHIL---LGRQVGVPYIIVFLNKC 129
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 70
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 71 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 114
Query: 137 VQT 139
QT
Sbjct: 115 PQT 117
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 46/181 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK+TLT +L TDT +E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IG 51
Query: 81 MTDAALK--------------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGAL 126
DA ++ Y G ++ ID+PGH + + A + DGA+
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
Query: 127 VVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 182
+V+ E C + +T + Q +G++ ++ NK++ VD E+A + ++++
Sbjct: 112 LVIAANE-PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIK 163
Query: 183 E 183
E
Sbjct: 164 E 164
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 59/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 46/181 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK+TLT +L TDT +E RGITIK
Sbjct: 12 NIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IG 51
Query: 81 MTDAALK--------------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGAL 126
DA ++ Y G ++ ID+PGH + + A + DGA+
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAI 111
Query: 127 VVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 182
+V+ E C + +T + Q +G++ ++ NK++ VD E+A + ++++
Sbjct: 112 LVIAANE-PCPRPQTREHLMALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIK 163
Query: 183 E 183
E
Sbjct: 164 E 164
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT ++ ++A+ G R D +E RGITI ++ +
Sbjct: 298 NVGTIGHVDHGKTTLTAAITT---VLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY 354
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
D + Y +D PGH D+ + DGA++VV +G
Sbjct: 355 -----DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP 398
Query: 138 QT-ETVLRQALGERIRPVLTVNKMDRC 163
QT E +L LG ++ + +++C
Sbjct: 399 QTREHIL---LGRQVGVPYIIVFLNKC 422
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 26/147 (17%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L VAAA EV GD+ D ++E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDI---DKAREERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D GH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRM 113
Query: 137 VQT--ETVLRQALGERIRPVLTVNKMD 161
QT +L + +G R V+ +NK+D
Sbjct: 114 RQTREHILLARQVGVRY-IVVFMNKVD 139
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 46/181 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ + HVDHGK+TLT +L TDT +E RGITIK
Sbjct: 12 NIGXVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIK-------IG 51
Query: 81 MTDAALK--------------SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGAL 126
DA ++ Y G ++ ID+PGH + A + DGA+
Sbjct: 52 FADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAI 111
Query: 127 VVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 182
+V+ E C + +T Q +G++ ++ NK++ VD E+A + ++++
Sbjct: 112 LVIAANE-PCPRPQTREHLXALQIIGQK-NIIIAQNKIE------LVDKEKALENYRQIK 163
Query: 183 E 183
E
Sbjct: 164 E 164
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 23/123 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSL--VAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGIS 76
N+ I HVDHGK+TLT +L V AA EV GD+ D +E RGITI + +
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDI---DKAPEERARGITINTAHVE 69
Query: 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC 136
YE A + Y + +D PGH D+ + DGA++VV +G
Sbjct: 70 --YE---TAKRHY-----------SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM 113
Query: 137 VQT 139
QT
Sbjct: 114 PQT 116
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPMDV 51
Query: 82 TDAALKSYRGERQGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 139
+ + + E L L ID+PGH F++ + D A+++VD EG QT
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 140 ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQK 180
+ L R V+ NK+DR +G +TF K
Sbjct: 112 QEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81
+SV+ HVDHGK+TL D + +A +A AG GIT + ++
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSA--VASREAG--------------GITQHIGATEIPXDV 51
Query: 82 TDAALKSYRGERQGNEYLINL--IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 139
+ + + E L L ID+PGH F++ + D A+++VD EG QT
Sbjct: 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT 111
Query: 140 ETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQK 180
+ L R V+ NK+DR +G +TF K
Sbjct: 112 QEALNILRXYRTPFVVAANKIDRIHGWRVHEGRPFXETFSK 152
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D L R T EA GI+ +
Sbjct: 7 VTIMGHVDHGKTTLLDKL---------------RKTQVAAMEA--------GGITQHIGA 43
Query: 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
+L S GE+ I +D+PGH FS+ ++TD ++VV +GV QT
Sbjct: 44 FLVSLPS--GEK------ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVE 95
Query: 142 VLRQALGERIRPVLTVNKMDRC 163
++ A + VL +NK D+
Sbjct: 96 SIQHAKDAHVPIVLAINKCDKA 117
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81
++++ HVDHGK+TL D+ +R + + EA GIT + G Y++
Sbjct: 11 VTIMGHVDHGKTTLLDA---------------IRHSKVTEQEA-GGIT-QHIG---AYQV 50
Query: 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
T N+ I +D+PGH F++ ++TD ++VV +GV QT
Sbjct: 51 T------------VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE 98
Query: 142 VLRQALGERIRPVLTVNKMDR 162
+ A + ++ +NKMD+
Sbjct: 99 AINHAKAANVPIIVAINKMDK 119
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 34/144 (23%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ I HVDHGK+TLT ++ ++A+ G A RGITI ++ +
Sbjct: 13 NVGTIGHVDHGKTTLTAAITT---VLAKTYGG-----------AARGITINTSHVEY--- 55
Query: 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT- 139
D + Y +D PGH D+ + DGA++VV +G QT
Sbjct: 56 --DTPTRHY-----------AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 102
Query: 140 ETVLRQALGERIRPVLTVNKMDRC 163
E +L LG ++ + +++C
Sbjct: 103 EHIL---LGRQVGVPYIIVFLNKC 123
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 50/200 (25%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII------------AQEVAGDVR---MTDTRQDEAE 65
N+ VI HVD GKST T L+ G I A+ G + + D + E E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RGITI D AL + + Y + +ID+PGH DF + D A
Sbjct: 69 RGITI------------DIALWKFETPK----YQVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 126 LVVV-----DCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176
++++ + G+ +T +L LG R + ++ VNKMD V +E+
Sbjct: 113 ILIIAGGVGEFEAGISKDGQTREHALLAFTLGVR-QLIVAVNKMD------SVKWDESR- 164
Query: 177 TFQKVI-ENANVIMATYEDP 195
FQ+++ E +N I +P
Sbjct: 165 -FQEIVKETSNFIKKVGYNP 183
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI +
Sbjct: 5 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA---- 57
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+ E + AA + Y D PGH D+ + DG ++VV +G
Sbjct: 58 HVEYSTAA-RHYAH-----------TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMP 105
Query: 138 QTETVL---RQALGERIRPVLTVNKMD 161
QT L RQ E + V+ VNK D
Sbjct: 106 QTREHLLLARQIGVEHV--VVYVNKAD 130
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM---TDTRQDEAERGITIKSTGISL 77
N+ I HVDHGK+TLT A I+A+ + D +E RGITI +
Sbjct: 16 NVGTIGHVDHGKTTLT---AAITKILAEGGGAKFKKYEEIDNAPEERARGITINAA---- 68
Query: 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV 137
+ E + AA + Y D PGH D+ DG ++VV +G
Sbjct: 69 HVEYSTAA-RHY-----------AHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXP 116
Query: 138 QTETVL---RQALGERIRPVLTVNKMD 161
QT L RQ E + V+ VNK D
Sbjct: 117 QTREHLLLARQIGVEHV--VVYVNKAD 141
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ + + ++R ++D+PGH DF + D A++
Sbjct: 98 TV---------SICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIXGISQADXAILC 141
Query: 129 VDC 131
VDC
Sbjct: 142 VDC 144
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 36/185 (19%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ ++ HVDHGK++LT +L TD +E RGI+I+
Sbjct: 10 NIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIR 56
Query: 81 MTDAALKSYRGERQGN-----EYL--INLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133
R N E+L ++ +DSPGH + + + + DGA++V+ E
Sbjct: 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE 116
Query: 134 GVCVQTET----VLRQALG-ERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI-----E 183
C Q +T + + LG ++I ++ NK+D L + EE Y+ ++ + E
Sbjct: 117 -PCPQPQTKEHLMALEILGIDKI--IIVQNKID---LVDEKQAEENYEQIKEFVKGTIAE 170
Query: 184 NANVI 188
NA +I
Sbjct: 171 NAPII 175
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 732 VEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSG 791
VE+ PE+ +G + LN +RG + R + I+A++P+ E FG+++ LR+ T G
Sbjct: 3 VEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQV--IRAFVPLAEMFGYATDLRSKTQG 60
Query: 792 QA 793
+
Sbjct: 61 RG 62
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T +E +RG+TIK T I
Sbjct: 11 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 57
Query: 77 LYYE-------MTDAALKSYRGERQGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G ++L I+ ID+PGH + + + + DGA++
Sbjct: 58 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 116
Query: 128 VV 129
VV
Sbjct: 117 VV 118
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK----STGIS 76
N+ V+ HVDHGK+TL A GI T +E +RG+TIK T I
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKHSEELKRGMTIKLGYAETNIG 56
Query: 77 LYYE-------MTDAALKSYRGERQGNEYL--INLIDSPGHVDFSSEVTAALRITDGALV 127
+ +T+ + KS G ++L I+ ID+PGH + + + + DGA++
Sbjct: 57 VCESCKKPEAYVTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAIL 115
Query: 128 VV 129
VV
Sbjct: 116 VV 117
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 49/225 (21%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIA--------QEVAGDVR-------MTDTRQDEAE 65
++ V HVD GKST+ ++ G I E A + + DT ++E
Sbjct: 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA 238
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
RG+T+ D A ++ +++ + + D+PGH DF S + A D A
Sbjct: 239 RGVTM------------DVASTTFESDKK----IYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 126 LVVVDC---------IEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176
++VVD +E + L +ALG V++VNK+D L E+ +Q
Sbjct: 283 VLVVDSSQNNFERGFLENGQTREHAYLLRALGIS-EIVVSVNKLD-----LMSWSEDRFQ 336
Query: 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF---SAGLHGW 218
+ ++ + + M ++ + V + GT S+ L+ W
Sbjct: 337 EIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKW 381
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 31/123 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 97
Query: 69 TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ + + ++R ++D+PGH DF + D A++
Sbjct: 98 TV---------SICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIMGISQADMAILC 141
Query: 129 VDC 131
VDC
Sbjct: 142 VDC 144
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 41/164 (25%)
Query: 24 VIAHVDHGKSTLTDSLVAAAGIIAQ----------EVAGDVR-----MTDTRQDEAERGI 68
V+ HVD GKSTL L+ I+ Q E G + D +E ERG+
Sbjct: 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGV 231
Query: 69 TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
T+ + + ++R ++D+PGH DF + D A++
Sbjct: 232 TVS---------ICTSHFSTHRAN-------FTIVDAPGHRDFVPNAIMGISQADMAILC 275
Query: 129 VDCI-----EGVCVQTET----VLRQALGERIRPVLTVNKMDRC 163
VDC G + +T +L +LG ++ +NKMD
Sbjct: 276 VDCSTNAFESGFDLDGQTKEHMLLASSLGIH-NLIIAMNKMDNV 318
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI T + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGI----------WTSKKLGYAETNIGVCESCKKPEAY 56
Query: 81 MTDAALKSYRGERQGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 57 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 106
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 32/141 (22%)
Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81
++++ HVDHGK++L + +R T EA GIT I Y+
Sbjct: 7 VTIMGHVDHGKTSLLEY---------------IRSTKVASGEA-GGIT---QHIGAYHVE 47
Query: 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET 141
T+ + I +D+PGH F+S + TD ++VV +GV QT
Sbjct: 48 TENGM-------------ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIE 94
Query: 142 VLRQALGERIRPVLTVNKMDR 162
++ A ++ V+ VNK+D+
Sbjct: 95 AIQHAKAAQVPVVVAVNKIDK 115
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80
N+ V+ HVDHGK+TL A GI + + + + AE I + +
Sbjct: 10 NIGVVGHVDHGKTTLVQ---AITGIWTSKHSEET----IKLGYAETNIGVCESCKKPEAY 62
Query: 81 MTDAALKSYRGERQGNEYL--INLIDSPGHVDFSSEVTAALRITDGALVVV 129
+T+ + KS G ++L I+ ID+PGH + + + + DGA++VV
Sbjct: 63 VTEPSCKSC-GSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVV 112
>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid-
Regulated Kinase 1 In Complex With Amp-Pnp
pdb|3HDM|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 1
pdb|3HDN|A Chain A, Crystal Structure Of Serum And Glucocorticoid-Regulated
Kinase 1 In Complex With Compound 2
Length = 373
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 591 ARPLEEGLAEAIDDGRIGPRDD-PKVRSKILSEEFGWDKDLAKKIW-CFGPETIGPN 645
AR L EGL + R+G +DD +++S + WD + KKI F P GPN
Sbjct: 266 ARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDLINKKITPPFNPNVSGPN 322
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 42/170 (24%)
Query: 26 AHVDHGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRQDEAERGI 68
+VD GKSTL L+ + I ++ GD + D Q E E+GI
Sbjct: 31 GNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGI 90
Query: 69 TIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
TI D A + + ++ +++I D+PGH ++ D A+++
Sbjct: 91 TI------------DVAYRYFSTAKR--KFII--ADTPGHEQYTRNXATGASTCDLAIIL 134
Query: 129 VDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMD------RCFLELQVD 170
VD GV QT + + LG + V+ +NK D R F ++ D
Sbjct: 135 VDARYGVQTQTRRHSYIASLLGIK-HIVVAINKXDLNGFDERVFESIKAD 183
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 31/129 (24%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGII--------AQEVAGDVRMT-------DTRQDEAE 65
N+ I HVD GKST+ ++ G++ +E R T DT Q+E +
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 66 RGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGA 125
+G T++ Y+E ++D+PGH F + D A
Sbjct: 79 KGKTVEVG--RAYFETEKKHF--------------TILDAPGHKSFVPNMIGGASQADLA 122
Query: 126 LVVVDCIEG 134
++V+ +G
Sbjct: 123 VLVISARKG 131
>pdb|3UJ3|X Chain X, Crystal Structure Of The Synaptic Tetramer Of The
G-Segment Invertase (Gin)
Length = 193
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 499 SDLPKLVEGLKRLAKSDPMVVCSMEESG---EHIIAGAGELHLE-ICLKDLQDDFMGGAE 554
+D P L LKRL K D +VV ++ G +H+I+ GEL I + L D
Sbjct: 40 TDRPGLKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTD------S 93
Query: 555 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPR 610
I S P+ F VM L +E R + GLA A + GRIG R
Sbjct: 94 IDTSSPMGRF--------FFHVMGALAEVERELIIE-RTM-AGLAAARNKGRIGGR 139
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAER 66
+EL + M K ++ N+ I HVD GKSTL +++ G++ D R + + EA
Sbjct: 32 QELLKDMYGKEHV-NIVFIGHVDAGKSTLGGNILFLTGMV------DKRTMEKIEREA-- 82
Query: 67 GITIKSTGISLYYEMTDAALKSYRGERQ-------GNEYL------INLIDSPGHVDFSS 113
K G +Y AL S ER+ G Y +L+D+PGH + +
Sbjct: 83 ----KEAGKESWY--LSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVT 136
Query: 114 EVTAALRITDGALVVVDCIEG 134
+ D ++V+ G
Sbjct: 137 NMINGASQADIGVLVISARRG 157
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
N+ I HVDHGK+TLT A ++A+ G R
Sbjct: 6 NVGTIGHVDHGKTTLT---AAITTVLAKTYGGAAR 37
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 162 RC 163
+C
Sbjct: 78 KC 79
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161
+D PGH D+ + DGA++VV +G QT E +L LG ++ + ++
Sbjct: 21 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL---LGRQVGVPYIIVFLN 77
Query: 162 RC 163
+C
Sbjct: 78 KC 79
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 515 DPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG--GAEI-IKSDP----VVSFRET 567
D + VC + SG H + LH + K+ + D A+I + S P + + T
Sbjct: 184 DNIRVCKILGSGVH---SSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITETKGT 240
Query: 568 VLEKSCRTVMSKSPNKHNRLYMEARPL-EEGLAEAIDDGRIGP---RDDPKVRSKILSEE 623
VL KS +M+ S + N + + + + + G + GR+ K ++
Sbjct: 241 VLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLN 300
Query: 624 FGWD-KDLAKKIWCFGPETIGPNMVVDM--CKGVQYLNEIKDSVVAGFQWASKEGALAEE 680
WD + L K + + P ++ +M C V YL+E+ D+ V F+ ++GA++
Sbjct: 301 SKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSV-YLSEVGDTQVVVFKHEKEDGAISTI 359
Query: 681 NMRG 684
+RG
Sbjct: 360 VLRG 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,721,251
Number of Sequences: 62578
Number of extensions: 1038806
Number of successful extensions: 2614
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2334
Number of HSP's gapped (non-prelim): 148
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)