Query 003166
Match_columns 843
No_of_seqs 320 out of 2779
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 100.0 7E-156 2E-160 1420.8 85.1 840 1-843 1-842 (842)
2 4fn5_A EF-G 1, elongation fact 100.0 5E-123 2E-127 1117.3 52.7 671 17-809 11-700 (709)
3 2rdo_7 EF-G, elongation factor 100.0 1E-114 5E-119 1038.4 67.3 672 15-822 6-701 (704)
4 2xex_A Elongation factor G; GT 100.0 4E-112 1E-116 1016.9 61.3 662 16-823 7-690 (693)
5 1dar_A EF-G, elongation factor 100.0 2E-112 7E-117 1018.8 52.7 660 15-821 8-689 (691)
6 3j25_A Tetracycline resistance 100.0 8E-115 3E-119 1032.0 17.5 602 18-813 1-620 (638)
7 2dy1_A Elongation factor G; tr 100.0 3E-104 1E-108 945.2 61.2 634 16-824 6-662 (665)
8 3vqt_A RF-3, peptide chain rel 100.0 3.7E-79 1.3E-83 711.7 31.0 449 15-573 27-502 (548)
9 2ywe_A GTP-binding protein LEP 100.0 1.6E-74 5.4E-79 673.7 45.6 489 16-824 3-521 (600)
10 3cb4_D GTP-binding protein LEP 100.0 7.5E-73 2.6E-77 661.3 45.0 485 17-824 2-516 (599)
11 2h5e_A Peptide chain release f 100.0 5.7E-63 2E-67 573.2 32.6 444 16-571 10-477 (529)
12 3tr5_A RF-3, peptide chain rel 100.0 6.3E-61 2.1E-65 555.4 32.9 440 16-571 10-476 (528)
13 3e3x_A BIPA; MCSG,PSI2, struct 100.0 8.8E-39 3E-43 340.6 20.2 195 453-810 2-208 (332)
14 3j2k_7 ERF3, eukaryotic polype 100.0 4.4E-29 1.5E-33 284.1 29.6 287 16-472 14-328 (439)
15 1d2e_A Elongation factor TU (E 100.0 5.3E-30 1.8E-34 288.6 20.6 283 19-471 3-290 (397)
16 2c78_A Elongation factor TU-A; 100.0 1.2E-29 4.3E-34 286.5 22.7 297 15-471 7-308 (405)
17 1g7s_A Translation initiation 100.0 1E-29 3.5E-34 297.6 19.1 328 18-511 4-373 (594)
18 1jny_A EF-1-alpha, elongation 100.0 1E-29 3.6E-34 289.4 18.0 289 17-472 4-318 (435)
19 3mca_A HBS1, elongation factor 100.0 2.3E-29 7.8E-34 295.8 15.2 288 17-472 175-490 (592)
20 3p26_A Elongation factor 1 alp 100.0 1.8E-27 6.3E-32 274.5 26.0 305 12-472 26-363 (483)
21 3avx_A Elongation factor TS, e 100.0 9.4E-28 3.2E-32 290.4 22.0 284 17-471 294-581 (1289)
22 1f60_A Elongation factor EEF1A 100.0 2.6E-27 9E-32 270.9 23.4 302 13-471 1-328 (458)
23 1r5b_A Eukaryotic peptide chai 100.0 1.4E-27 4.8E-32 273.8 21.1 289 17-472 41-357 (467)
24 2elf_A Protein translation elo 99.9 9.6E-27 3.3E-31 258.6 23.5 104 18-162 20-125 (370)
25 1zun_B Sulfate adenylate trans 99.9 8.6E-27 2.9E-31 265.4 23.4 297 7-472 10-327 (434)
26 3izq_1 HBS1P, elongation facto 99.9 5.2E-27 1.8E-31 276.5 20.3 300 15-472 163-497 (611)
27 1kk1_A EIF2gamma; initiation o 99.9 3.1E-26 1.1E-30 259.0 25.9 134 16-163 7-150 (410)
28 1s0u_A EIF-2-gamma, translatio 99.9 8.2E-25 2.8E-29 247.2 24.3 133 17-163 6-148 (408)
29 1zo1_I IF2, translation initia 99.9 1.1E-26 3.8E-31 265.4 4.8 114 18-163 3-116 (501)
30 3sjy_A Translation initiation 99.9 7.7E-24 2.6E-28 238.8 23.3 135 17-163 6-142 (403)
31 1wb1_A Translation elongation 99.9 2.3E-25 7.9E-30 256.1 10.9 122 17-163 17-138 (482)
32 3izy_P Translation initiation 99.9 3.6E-25 1.2E-29 255.0 6.0 114 19-163 4-117 (537)
33 1wf3_A GTP-binding protein; GT 99.6 2.7E-15 9.1E-20 162.0 14.1 119 14-163 2-130 (301)
34 2hjg_A GTP-binding protein ENG 99.5 1.3E-14 4.4E-19 165.1 12.8 115 18-163 174-299 (436)
35 2xtp_A GTPase IMAP family memb 99.5 4E-14 1.4E-18 149.5 15.6 116 17-163 20-152 (260)
36 2lkc_A Translation initiation 99.5 8.5E-15 2.9E-19 144.4 9.3 115 17-163 6-120 (178)
37 3iev_A GTP-binding protein ERA 99.5 4E-14 1.4E-18 153.4 15.4 118 16-163 7-135 (308)
38 1ega_A Protein (GTP-binding pr 99.5 1.6E-14 5.6E-19 155.9 10.0 114 18-163 7-129 (301)
39 2dyk_A GTP-binding protein; GT 99.5 1.2E-13 4.2E-18 133.5 13.0 114 19-163 1-121 (161)
40 4dhe_A Probable GTP-binding pr 99.5 7E-14 2.4E-18 143.6 11.6 117 17-163 27-157 (223)
41 4dcu_A GTP-binding protein ENG 99.5 7.1E-14 2.4E-18 159.9 12.2 115 18-163 194-319 (456)
42 3lxw_A GTPase IMAP family memb 99.5 2E-13 6.8E-18 143.2 14.5 123 17-174 19-159 (247)
43 3qq5_A Small GTP-binding prote 99.5 2.7E-14 9.2E-19 160.5 7.0 115 17-163 32-153 (423)
44 3iby_A Ferrous iron transport 99.4 3E-13 1E-17 142.5 11.6 111 19-163 1-123 (256)
45 1mky_A Probable GTP-binding pr 99.4 4.5E-13 1.5E-17 152.5 12.8 113 20-163 2-123 (439)
46 3k53_A Ferrous iron transport 99.4 4.3E-13 1.5E-17 142.6 11.8 112 18-163 2-122 (271)
47 1svi_A GTP-binding protein YSX 99.4 8.3E-13 2.8E-17 132.3 13.2 114 17-163 21-147 (195)
48 2fh5_B SR-beta, signal recogni 99.4 1.7E-12 5.6E-17 132.5 15.6 133 15-184 3-146 (214)
49 3t1o_A Gliding protein MGLA; G 99.4 5.3E-13 1.8E-17 133.6 11.4 128 17-163 12-148 (198)
50 4bas_A ADP-ribosylation factor 99.4 6.9E-13 2.4E-17 133.3 11.8 115 16-163 14-140 (199)
51 3tw8_B RAS-related protein RAB 99.4 2.8E-13 9.6E-18 133.6 8.7 120 14-163 4-126 (181)
52 3pqc_A Probable GTP-binding pr 99.4 1.5E-12 5.2E-17 130.1 13.9 113 17-163 21-146 (195)
53 1wms_A RAB-9, RAB9, RAS-relate 99.4 1.4E-12 4.8E-17 128.2 13.4 120 14-163 2-129 (177)
54 3tkl_A RAS-related protein RAB 99.4 5.9E-13 2E-17 133.4 10.7 120 14-163 11-134 (196)
55 3def_A T7I23.11 protein; chlor 99.4 1.2E-12 4.3E-17 138.3 13.7 116 17-163 34-164 (262)
56 2bme_A RAB4A, RAS-related prot 99.4 7.5E-13 2.6E-17 131.5 11.3 117 17-163 8-128 (186)
57 2fn4_A P23, RAS-related protei 99.4 1.4E-12 4.8E-17 128.5 12.7 119 14-163 4-127 (181)
58 1ky3_A GTP-binding protein YPT 99.4 1.3E-12 4.5E-17 128.9 12.1 119 16-163 5-131 (182)
59 1z0f_A RAB14, member RAS oncog 99.4 1.4E-12 4.8E-17 128.3 12.0 117 17-163 13-133 (179)
60 1r8s_A ADP-ribosylation factor 99.4 2.6E-12 8.8E-17 124.7 13.7 108 21-163 2-114 (164)
61 2il1_A RAB12; G-protein, GDP, 99.4 1.3E-12 4.5E-17 131.1 12.0 116 18-163 25-144 (192)
62 1u8z_A RAS-related protein RAL 99.4 5.5E-12 1.9E-16 122.3 15.9 115 18-163 3-122 (168)
63 2hjg_A GTP-binding protein ENG 99.4 3.3E-13 1.1E-17 153.5 8.0 113 20-163 4-124 (436)
64 1upt_A ARL1, ADP-ribosylation 99.4 1.1E-12 3.9E-17 128.0 10.9 111 18-163 6-121 (171)
65 2p5s_A RAS and EF-hand domain 99.4 1.2E-12 4.2E-17 132.0 11.1 117 17-163 26-146 (199)
66 1fzq_A ADP-ribosylation factor 99.4 4.1E-12 1.4E-16 126.2 14.7 119 10-163 7-130 (181)
67 3kkq_A RAS-related protein M-R 99.4 2.4E-12 8.1E-17 127.6 12.7 115 17-163 16-136 (183)
68 1zd9_A ADP-ribosylation factor 99.4 2E-12 7E-17 129.1 12.3 112 18-163 21-137 (188)
69 4dcu_A GTP-binding protein ENG 99.4 3.4E-13 1.2E-17 154.3 7.2 116 17-163 21-144 (456)
70 3i8s_A Ferrous iron transport 99.4 1.6E-12 5.3E-17 138.5 11.9 110 20-163 4-125 (274)
71 2a9k_A RAS-related protein RAL 99.4 7.1E-12 2.4E-16 124.1 15.8 118 15-163 14-136 (187)
72 1jwy_B Dynamin A GTPase domain 99.4 2.1E-12 7.3E-17 140.1 13.0 67 97-163 130-211 (315)
73 1vg8_A RAS-related protein RAB 99.4 1E-12 3.5E-17 133.0 9.8 118 16-163 5-130 (207)
74 2y8e_A RAB-protein 6, GH09086P 99.4 1.4E-12 4.8E-17 128.2 10.6 119 15-163 10-132 (179)
75 2hxs_A RAB-26, RAS-related pro 99.4 3E-12 1E-16 126.0 12.9 118 17-163 4-128 (178)
76 3clv_A RAB5 protein, putative; 99.4 3.4E-12 1.2E-16 128.2 13.5 66 97-162 92-159 (208)
77 2efe_B Small GTP-binding prote 99.4 1.6E-12 5.3E-17 128.4 10.7 117 17-163 10-130 (181)
78 3llu_A RAS-related GTP-binding 99.4 5.3E-12 1.8E-16 127.1 14.6 118 16-163 17-142 (196)
79 2gj8_A MNME, tRNA modification 99.4 2.6E-12 8.9E-17 126.7 12.1 113 20-163 5-128 (172)
80 1r2q_A RAS-related protein RAB 99.4 1.5E-12 5.1E-17 126.8 10.2 116 18-163 5-124 (170)
81 1ek0_A Protein (GTP-binding pr 99.4 2.1E-12 7.3E-17 125.7 11.1 114 20-163 4-121 (170)
82 1zj6_A ADP-ribosylation factor 99.4 3E-12 1E-16 127.6 12.3 112 17-163 14-130 (187)
83 1zbd_A Rabphilin-3A; G protein 99.4 1.6E-12 5.4E-17 131.4 10.3 116 18-163 7-126 (203)
84 1f6b_A SAR1; gtpases, N-termin 99.4 3.5E-12 1.2E-16 128.8 12.8 112 17-163 23-139 (198)
85 3a1s_A Iron(II) transport prot 99.4 2.5E-12 8.4E-17 135.7 12.1 112 18-163 4-123 (258)
86 1c1y_A RAS-related protein RAP 99.4 6.2E-12 2.1E-16 122.1 14.1 113 19-163 3-121 (167)
87 2hup_A RAS-related protein RAB 99.4 6.4E-12 2.2E-16 127.1 14.6 117 17-163 27-147 (201)
88 1kao_A RAP2A; GTP-binding prot 99.4 5.7E-12 2E-16 122.1 13.7 113 19-163 3-121 (167)
89 2g6b_A RAS-related protein RAB 99.4 2.8E-12 9.6E-17 126.5 11.6 118 17-163 8-129 (180)
90 2ew1_A RAS-related protein RAB 99.3 2E-12 6.9E-17 131.0 10.6 121 13-163 20-144 (201)
91 2h57_A ADP-ribosylation factor 99.3 3.3E-12 1.1E-16 127.6 12.0 113 18-163 20-139 (190)
92 2oil_A CATX-8, RAS-related pro 99.3 2.3E-12 7.8E-17 129.1 10.4 117 17-163 23-143 (193)
93 3bc1_A RAS-related protein RAB 99.3 3.5E-12 1.2E-16 127.1 11.8 126 17-163 9-140 (195)
94 1z06_A RAS-related protein RAB 99.3 2.5E-12 8.4E-17 128.4 10.6 117 17-163 18-140 (189)
95 2gf9_A RAS-related protein RAB 99.3 1.6E-12 5.4E-17 129.9 9.1 116 18-163 21-140 (189)
96 1z2a_A RAS-related protein RAB 99.3 1.9E-12 6.7E-17 125.8 9.4 117 17-163 3-122 (168)
97 2fu5_C RAS-related protein RAB 99.3 9.6E-13 3.3E-17 130.4 7.3 117 17-163 6-126 (183)
98 1h65_A Chloroplast outer envel 99.3 1.2E-11 4.3E-16 131.2 16.4 116 17-163 37-167 (270)
99 1g16_A RAS-related protein SEC 99.3 1.5E-12 5.3E-17 126.8 8.7 115 19-163 3-121 (170)
100 2fg5_A RAB-22B, RAS-related pr 99.3 2.4E-12 8.2E-17 129.0 10.3 117 17-163 21-141 (192)
101 1ksh_A ARF-like protein 2; sma 99.3 2.5E-12 8.6E-17 127.9 10.3 112 17-163 16-132 (186)
102 1m2o_B GTP-binding protein SAR 99.3 5.5E-12 1.9E-16 126.4 12.8 112 17-163 21-137 (190)
103 1mky_A Probable GTP-binding pr 99.3 5.2E-12 1.8E-16 143.7 14.2 114 19-163 180-305 (439)
104 2gf0_A GTP-binding protein DI- 99.3 5.6E-12 1.9E-16 126.5 12.8 120 13-163 2-127 (199)
105 2b6h_A ADP-ribosylation factor 99.3 5.3E-12 1.8E-16 126.7 12.5 112 17-163 27-143 (192)
106 2bcg_Y Protein YP2, GTP-bindin 99.3 2.2E-12 7.4E-17 130.8 9.6 117 17-163 6-126 (206)
107 2wji_A Ferrous iron transport 99.3 6.3E-12 2.1E-16 122.8 12.6 111 19-163 3-121 (165)
108 2erx_A GTP-binding protein DI- 99.3 5.1E-12 1.7E-16 123.2 12.0 114 19-163 3-122 (172)
109 2bov_A RAla, RAS-related prote 99.3 2E-11 6.7E-16 123.3 16.5 116 17-163 12-132 (206)
110 3cph_A RAS-related protein SEC 99.3 2.2E-12 7.5E-17 131.1 9.5 117 17-163 18-138 (213)
111 1z0j_A RAB-22, RAS-related pro 99.3 3.6E-12 1.2E-16 124.1 10.6 115 19-163 6-124 (170)
112 2ce2_X GTPase HRAS; signaling 99.3 1E-11 3.4E-16 120.1 13.5 112 20-163 4-121 (166)
113 1x3s_A RAS-related protein RAB 99.3 2.6E-12 8.9E-17 128.4 9.6 116 18-163 14-134 (195)
114 2wjg_A FEOB, ferrous iron tran 99.3 8.7E-12 3E-16 124.0 13.0 112 18-163 6-125 (188)
115 4dsu_A GTPase KRAS, isoform 2B 99.3 6.6E-12 2.3E-16 124.7 11.9 114 19-163 4-122 (189)
116 2a5j_A RAS-related protein RAB 99.3 2.8E-12 9.5E-17 128.4 9.1 116 18-163 20-139 (191)
117 3t5g_A GTP-binding protein RHE 99.3 3E-12 1E-16 126.6 9.2 115 18-163 5-124 (181)
118 2nzj_A GTP-binding protein REM 99.3 5.3E-12 1.8E-16 123.7 10.9 115 18-163 3-124 (175)
119 3dz8_A RAS-related protein RAB 99.3 2.1E-12 7.3E-17 129.2 8.1 117 17-163 21-141 (191)
120 2f7s_A C25KG, RAS-related prot 99.3 4.1E-12 1.4E-16 129.8 10.3 127 17-163 23-154 (217)
121 2h17_A ADP-ribosylation factor 99.3 3.9E-12 1.3E-16 126.1 9.8 111 18-163 20-135 (181)
122 1z08_A RAS-related protein RAB 99.3 5E-12 1.7E-16 123.3 10.2 116 18-163 5-124 (170)
123 1nrj_B SR-beta, signal recogni 99.3 1.7E-11 5.9E-16 125.2 14.5 111 17-163 10-133 (218)
124 4djt_A GTP-binding nuclear pro 99.3 2.7E-12 9.4E-17 131.2 8.4 121 14-163 6-130 (218)
125 1moz_A ARL1, ADP-ribosylation 99.3 3.7E-12 1.3E-16 126.0 9.1 112 17-163 16-132 (183)
126 3reg_A RHO-like small GTPase; 99.3 8.5E-12 2.9E-16 125.1 11.7 116 17-163 21-140 (194)
127 3t5d_A Septin-7; GTP-binding p 99.3 2.4E-11 8.1E-16 129.4 15.7 122 19-163 8-157 (274)
128 4gzl_A RAS-related C3 botulinu 99.3 2.9E-12 9.8E-17 130.0 8.1 116 17-163 28-147 (204)
129 3lxx_A GTPase IMAP family memb 99.3 6.2E-12 2.1E-16 131.0 10.8 117 16-163 26-158 (239)
130 3r7w_A Gtpase1, GTP-binding pr 99.3 6.5E-12 2.2E-16 136.0 11.2 114 20-163 4-128 (307)
131 2p67_A LAO/AO transport system 99.3 4.7E-12 1.6E-16 139.1 10.1 61 96-163 147-207 (341)
132 3gj0_A GTP-binding nuclear pro 99.3 4.2E-12 1.4E-16 130.3 8.9 117 17-163 13-132 (221)
133 3gee_A MNME, tRNA modification 99.3 4.3E-12 1.5E-16 144.9 9.9 111 20-163 234-356 (476)
134 2o52_A RAS-related protein RAB 99.3 3.5E-12 1.2E-16 128.8 8.1 117 17-163 23-143 (200)
135 2x77_A ADP-ribosylation factor 99.3 2.5E-12 8.4E-17 128.4 6.7 112 17-163 20-136 (189)
136 3con_A GTPase NRAS; structural 99.3 1.4E-11 4.6E-16 123.0 11.8 114 19-163 21-139 (190)
137 3q85_A GTP-binding protein REM 99.3 9.9E-12 3.4E-16 121.1 10.6 115 19-163 2-122 (169)
138 3q72_A GTP-binding protein RAD 99.3 6.8E-12 2.3E-16 121.9 9.2 113 19-163 2-119 (166)
139 3oes_A GTPase rhebl1; small GT 99.3 7.6E-12 2.6E-16 126.4 9.8 116 17-163 22-142 (201)
140 2ged_A SR-beta, signal recogni 99.3 8.9E-12 3.1E-16 124.6 10.2 128 17-184 46-187 (193)
141 1mh1_A RAC1; GTP-binding, GTPa 99.3 4.2E-12 1.4E-16 125.8 7.7 114 19-163 5-122 (186)
142 3l0i_B RAS-related protein RAB 99.3 6.4E-13 2.2E-17 134.1 1.7 117 17-163 31-151 (199)
143 3geh_A MNME, tRNA modification 99.3 4.7E-12 1.6E-16 144.1 8.7 111 20-163 225-343 (462)
144 2yc2_C IFT27, small RAB-relate 99.3 7.1E-12 2.4E-16 126.6 8.8 117 19-163 20-145 (208)
145 3cpj_B GTP-binding protein YPT 99.3 5E-12 1.7E-16 130.0 7.7 117 17-163 11-131 (223)
146 2atx_A Small GTP binding prote 99.3 1.2E-11 4.1E-16 123.9 10.0 115 18-163 17-135 (194)
147 1xzp_A Probable tRNA modificat 99.2 1E-11 3.6E-16 141.9 10.3 111 20-163 244-363 (482)
148 3o47_A ADP-ribosylation factor 99.2 1.9E-11 6.4E-16 133.6 11.8 109 20-163 166-279 (329)
149 2j0v_A RAC-like GTP-binding pr 99.2 2.8E-11 9.7E-16 123.0 12.3 115 18-163 8-126 (212)
150 2atv_A RERG, RAS-like estrogen 99.2 5.2E-11 1.8E-15 119.6 14.0 113 18-163 27-145 (196)
151 1m7b_A RND3/RHOE small GTP-bin 99.2 1.1E-11 3.9E-16 123.1 8.9 115 17-163 5-124 (184)
152 2fv8_A H6, RHO-related GTP-bin 99.2 1.5E-11 5.2E-16 124.8 10.0 115 18-163 24-142 (207)
153 2qpt_A EH domain-containing pr 99.2 3E-11 1E-15 140.6 13.8 66 98-163 154-231 (550)
154 2qu8_A Putative nucleolar GTP- 99.2 5.3E-11 1.8E-15 122.8 14.2 115 17-163 27-155 (228)
155 3bwd_D RAC-like GTP-binding pr 99.2 3.9E-12 1.3E-16 125.7 5.2 114 19-163 8-125 (182)
156 2gco_A H9, RHO-related GTP-bin 99.2 1.8E-11 6.1E-16 123.7 10.0 114 19-163 25-142 (201)
157 2j1l_A RHO-related GTP-binding 99.2 1.9E-11 6.7E-16 124.8 10.2 114 18-163 33-151 (214)
158 3b1v_A Ferrous iron uptake tra 99.2 1.2E-11 4.2E-16 131.2 8.8 110 19-163 3-120 (272)
159 2q3h_A RAS homolog gene family 99.2 1.6E-11 5.5E-16 123.7 8.8 115 17-163 18-137 (201)
160 2aka_B Dynamin-1; fusion prote 99.2 5.3E-11 1.8E-15 128.0 13.4 67 97-163 124-205 (299)
161 3c5c_A RAS-like protein 12; GD 99.2 1.1E-10 3.9E-15 116.3 14.4 114 17-163 19-140 (187)
162 1gwn_A RHO-related GTP-binding 99.2 2.2E-11 7.4E-16 123.7 9.0 115 17-163 26-145 (205)
163 3q3j_B RHO-related GTP-binding 99.2 4.3E-11 1.5E-15 122.3 10.6 115 18-163 26-144 (214)
164 3ihw_A Centg3; RAS, centaurin, 99.2 1.1E-10 3.9E-15 116.2 12.4 110 17-163 18-132 (184)
165 2iwr_A Centaurin gamma 1; ANK 99.2 2.5E-10 8.5E-15 112.3 14.3 109 18-163 6-121 (178)
166 3th5_A RAS-related C3 botulinu 98.8 3E-12 1E-16 129.6 0.0 124 8-163 20-147 (204)
167 3cbq_A GTP-binding protein REM 99.2 1.5E-10 5.1E-15 116.5 12.5 117 17-163 21-143 (195)
168 4dkx_A RAS-related protein RAB 99.1 2.6E-10 9.1E-15 116.7 13.4 118 16-163 10-131 (216)
169 2cxx_A Probable GTP-binding pr 99.1 2E-10 6.9E-15 114.1 12.2 108 20-163 2-135 (190)
170 3lvq_E ARF-GAP with SH3 domain 99.1 1.2E-10 4.1E-15 134.7 11.3 111 18-163 321-436 (497)
171 2j69_A Bacterial dynamin-like 99.1 3.8E-10 1.3E-14 135.1 12.5 66 98-163 174-243 (695)
172 2qtf_A Protein HFLX, GTP-bindi 99.0 1.5E-09 5.3E-14 119.8 15.4 114 18-163 178-305 (364)
173 2wkq_A NPH1-1, RAS-related C3 99.0 3.6E-10 1.2E-14 123.0 9.8 116 17-163 153-272 (332)
174 3t34_A Dynamin-related protein 99.0 1.1E-09 3.9E-14 121.0 12.7 67 97-163 135-216 (360)
175 1lnz_A SPO0B-associated GTP-bi 99.0 3.1E-10 1E-14 124.2 7.8 114 19-163 158-287 (342)
176 2x2e_A Dynamin-1; nitration, h 99.0 1E-09 3.5E-14 121.1 11.5 67 97-163 129-210 (353)
177 3dpu_A RAB family protein; roc 99.0 1.1E-09 3.7E-14 127.8 12.0 123 17-163 39-163 (535)
178 1pui_A ENGB, probable GTP-bind 99.0 1.6E-09 5.4E-14 109.8 11.7 113 18-163 25-150 (210)
179 2f9l_A RAB11B, member RAS onco 99.0 1.1E-09 3.6E-14 110.4 9.6 115 19-163 5-123 (199)
180 2g3y_A GTP-binding protein GEM 99.0 1.7E-09 5.9E-14 110.2 10.9 118 17-163 35-158 (211)
181 2zej_A Dardarin, leucine-rich 99.0 6.3E-10 2.1E-14 110.5 7.5 119 20-163 3-125 (184)
182 2e87_A Hypothetical protein PH 99.0 2.9E-09 1E-13 117.6 13.1 115 17-163 165-293 (357)
183 2cjw_A GTP-binding protein GEM 98.9 3.2E-09 1.1E-13 106.3 10.8 117 18-163 5-127 (192)
184 2qag_A Septin-2, protein NEDD5 98.9 2.8E-09 9.7E-14 117.7 11.3 123 19-163 37-187 (361)
185 1wxq_A GTP-binding protein; st 98.9 1.3E-09 4.5E-14 121.7 8.6 98 21-134 2-114 (397)
186 3r7w_B Gtpase2, GTP-binding pr 98.9 2.3E-09 7.9E-14 115.4 9.5 110 21-163 1-119 (331)
187 3p32_A Probable GTPase RV1496/ 98.9 1.7E-09 5.7E-14 119.4 7.9 61 96-163 170-230 (355)
188 4a9a_A Ribosome-interacting GT 98.9 4.4E-09 1.5E-13 115.9 10.3 111 20-163 73-195 (376)
189 1oix_A RAS-related protein RAB 98.9 5.3E-09 1.8E-13 104.6 9.7 116 18-163 28-147 (191)
190 3zvr_A Dynamin-1; hydrolase, D 98.8 1.1E-08 3.9E-13 121.5 13.2 67 97-163 149-230 (772)
191 2j37_W Signal recognition part 98.7 1.4E-08 4.7E-13 116.2 8.0 145 7-163 81-253 (504)
192 2wsm_A Hydrogenase expression/ 98.7 7.2E-09 2.4E-13 105.9 4.8 135 17-163 28-167 (221)
193 3c5h_A Glucocorticoid receptor 98.6 3E-08 1E-12 104.1 5.8 43 121-163 162-211 (255)
194 1udx_A The GTP-binding protein 98.6 1.8E-07 6.2E-12 104.6 12.2 114 19-163 157-282 (416)
195 1jal_A YCHF protein; nucleotid 98.6 8.2E-08 2.8E-12 105.2 8.0 98 20-133 3-108 (363)
196 2www_A Methylmalonic aciduria 98.5 1.5E-07 5.3E-12 103.3 9.2 61 96-163 165-225 (349)
197 1yrb_A ATP(GTP)binding protein 98.5 1.4E-07 4.8E-12 99.0 8.4 66 97-163 108-184 (262)
198 2dby_A GTP-binding protein; GD 98.5 8.7E-07 3E-11 97.6 13.7 98 20-133 2-111 (368)
199 3sop_A Neuronal-specific septi 98.4 1.9E-06 6.5E-11 91.0 14.8 120 20-163 3-153 (270)
200 2qag_C Septin-7; cell cycle, c 98.4 1.2E-06 4.2E-11 98.0 13.8 121 20-163 32-180 (418)
201 3ec1_A YQEH GTPase; atnos1, at 98.4 5.3E-08 1.8E-12 107.8 1.2 116 19-163 162-287 (369)
202 2qag_B Septin-6, protein NEDD5 98.4 1.3E-06 4.3E-11 97.5 11.7 119 18-163 41-189 (427)
203 3h2y_A GTPase family protein; 98.3 1.3E-07 4.4E-12 104.6 2.4 116 19-163 160-286 (368)
204 2qnr_A Septin-2, protein NEDD5 98.2 5.3E-06 1.8E-10 89.0 12.8 122 20-163 19-168 (301)
205 2ohf_A Protein OLA1, GTP-bindi 98.2 1.4E-06 4.8E-11 96.4 7.2 106 12-133 15-128 (396)
206 2v3c_C SRP54, signal recogniti 98.1 3.6E-06 1.2E-10 94.7 8.6 65 96-163 179-251 (432)
207 2qm8_A GTPase/ATPase; G protei 98.1 1.7E-06 5.9E-11 94.4 4.8 61 96-163 146-206 (337)
208 2xxa_A Signal recognition part 98.1 7.6E-06 2.6E-10 92.1 9.9 135 18-163 99-253 (433)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 1.1E-05 3.9E-10 89.2 10.0 106 13-133 14-127 (392)
210 3kl4_A SRP54, signal recogniti 98.0 1.1E-05 3.8E-10 90.4 8.8 135 19-163 97-251 (433)
211 3dm5_A SRP54, signal recogniti 97.9 2E-05 6.9E-10 88.3 10.1 133 19-163 100-252 (443)
212 1j8m_F SRP54, signal recogniti 97.9 1.6E-05 5.6E-10 84.9 8.8 134 19-163 98-252 (297)
213 1f5n_A Interferon-induced guan 97.8 2.2E-05 7.6E-10 91.2 8.3 118 5-148 24-147 (592)
214 2hf9_A Probable hydrogenase ni 97.8 4.6E-05 1.6E-09 77.6 9.6 132 17-163 36-177 (226)
215 4dzz_A Plasmid partitioning pr 97.6 0.00012 4.1E-09 73.2 9.1 64 97-163 75-143 (206)
216 1cip_A Protein (guanine nucleo 97.6 5.1E-05 1.7E-09 83.1 5.6 67 97-163 192-273 (353)
217 3e1y_E Eukaryotic peptide chai 97.5 0.00011 3.7E-09 74.0 6.5 85 372-472 3-90 (204)
218 1tq4_A IIGP1, interferon-induc 97.4 0.00027 9.3E-09 78.7 9.2 117 20-166 70-191 (413)
219 1zu4_A FTSY; GTPase, signal re 97.4 0.00025 8.5E-09 76.6 8.2 129 19-163 105-267 (320)
220 3szr_A Interferon-induced GTP- 97.4 0.00051 1.7E-08 80.8 11.6 66 98-163 147-227 (608)
221 1zcb_A G alpha I/13; GTP-bindi 97.4 0.0001 3.4E-09 81.0 5.1 67 97-163 200-281 (362)
222 4fid_A G protein alpha subunit 97.4 0.00014 4.9E-09 78.7 6.0 67 97-163 160-241 (340)
223 3e70_C DPA, signal recognition 97.2 0.00042 1.4E-08 75.0 7.2 136 19-163 129-281 (328)
224 1azs_C GS-alpha; complex (lyas 97.2 0.00035 1.2E-08 77.5 6.7 67 97-163 216-297 (402)
225 1puj_A YLQF, conserved hypothe 97.2 0.00031 1.1E-08 74.4 5.8 26 18-43 119-144 (282)
226 3ohm_A Guanine nucleotide-bind 97.2 0.00038 1.3E-08 75.1 6.3 67 97-163 166-247 (327)
227 2ffh_A Protein (FFH); SRP54, s 97.1 0.00061 2.1E-08 76.1 7.9 134 19-163 98-250 (425)
228 3cwq_A Para family chromosome 97.1 0.0017 5.9E-08 65.4 10.5 66 96-163 66-133 (209)
229 2yhs_A FTSY, cell division pro 97.1 0.00081 2.8E-08 76.0 8.3 135 19-163 293-451 (503)
230 1vma_A Cell division protein F 97.0 0.00085 2.9E-08 71.8 7.2 37 6-42 84-127 (306)
231 3q5d_A Atlastin-1; G protein, 97.0 0.0033 1.1E-07 70.5 11.6 39 4-42 48-90 (447)
232 3cnl_A YLQF, putative uncharac 96.9 0.00046 1.6E-08 72.3 4.3 23 20-42 100-122 (262)
233 2px0_A Flagellar biosynthesis 96.9 0.0007 2.4E-08 72.2 5.6 64 96-163 181-252 (296)
234 1rj9_A FTSY, signal recognitio 96.9 0.0014 5E-08 70.0 7.6 24 19-42 102-125 (304)
235 1ls1_A Signal recognition part 96.8 0.0018 6E-08 69.1 7.5 134 19-163 98-250 (295)
236 2xtz_A Guanine nucleotide-bind 96.8 0.00068 2.3E-08 74.1 4.4 68 96-163 181-263 (354)
237 3end_A Light-independent proto 96.5 0.0043 1.5E-07 66.3 8.2 66 96-162 155-225 (307)
238 1u0l_A Probable GTPase ENGC; p 96.3 0.0011 3.9E-08 70.8 2.3 63 99-163 64-128 (301)
239 1puj_A YLQF, conserved hypothe 96.3 0.0032 1.1E-07 66.6 5.5 60 102-163 3-63 (282)
240 3q9l_A Septum site-determining 96.3 0.0046 1.6E-07 64.0 6.5 65 97-163 113-186 (260)
241 2cve_A Hypothetical protein TT 96.3 0.0094 3.2E-07 58.3 8.2 110 679-795 80-190 (191)
242 1vi7_A Hypothetical protein YI 96.2 0.0066 2.3E-07 60.7 6.5 111 679-795 92-202 (217)
243 3b9q_A Chloroplast SRP recepto 96.1 0.024 8E-07 60.5 11.1 135 20-163 101-259 (302)
244 2og2_A Putative signal recogni 95.7 0.03 1E-06 61.0 10.0 136 19-163 157-316 (359)
245 3ec1_A YQEH GTPase; atnos1, at 95.4 0.016 5.3E-07 63.7 6.1 62 99-163 50-111 (369)
246 3cnl_A YLQF, putative uncharac 95.3 0.0047 1.6E-07 64.5 1.4 54 106-163 5-59 (262)
247 3l82_B F-box only protein 4; T 95.0 0.028 9.5E-07 56.1 5.8 65 99-163 97-176 (227)
248 2ph1_A Nucleotide-binding prot 94.9 0.053 1.8E-06 56.3 8.2 67 96-162 127-194 (262)
249 2yv5_A YJEQ protein; hydrolase 94.6 0.011 3.7E-07 63.1 2.1 56 108-163 66-123 (302)
250 4ido_A Atlastin-1; GTPase, GTP 94.6 0.15 5.2E-06 56.9 11.3 39 4-42 48-90 (457)
251 1t9h_A YLOQ, probable GTPase E 94.5 0.017 5.7E-07 61.7 3.1 21 20-40 174-194 (307)
252 3h2y_A GTPase family protein; 94.1 0.043 1.5E-06 60.2 5.5 54 108-163 56-109 (368)
253 1cp2_A CP2, nitrogenase iron p 94.0 0.098 3.3E-06 54.2 7.9 67 96-162 114-186 (269)
254 2afh_E Nitrogenase iron protei 94.0 0.17 5.7E-06 53.2 9.8 67 96-162 117-189 (289)
255 3l2o_B F-box only protein 4; s 93.4 0.085 2.9E-06 55.2 5.9 58 106-163 195-261 (312)
256 1g3q_A MIND ATPase, cell divis 93.3 0.1 3.5E-06 52.8 6.3 66 96-163 110-176 (237)
257 1t9h_A YLOQ, probable GTPase E 93.2 0.11 3.7E-06 55.4 6.4 47 117-163 82-130 (307)
258 2yv5_A YJEQ protein; hydrolase 93.1 0.11 3.6E-06 55.4 6.3 21 20-40 166-186 (302)
259 1hyq_A MIND, cell division inh 92.9 0.11 3.7E-06 53.6 5.9 66 96-163 109-175 (263)
260 1wcv_1 SOJ, segregation protei 92.9 0.25 8.5E-06 50.9 8.6 66 96-163 110-182 (257)
261 3zq6_A Putative arsenical pump 92.9 0.42 1.4E-05 51.2 10.7 41 123-163 223-264 (324)
262 3la6_A Tyrosine-protein kinase 92.3 0.17 5.9E-06 53.3 6.5 66 97-163 201-267 (286)
263 4eun_A Thermoresistant glucoki 92.3 0.082 2.8E-06 52.3 3.8 34 10-44 21-54 (200)
264 1ye8_A Protein THEP1, hypothet 92.3 0.072 2.5E-06 52.0 3.3 24 21-44 2-25 (178)
265 1lvg_A Guanylate kinase, GMP k 92.2 0.064 2.2E-06 53.2 3.0 24 19-42 4-27 (198)
266 1zp6_A Hypothetical protein AT 92.2 0.083 2.8E-06 51.5 3.7 26 16-41 6-31 (191)
267 1kgd_A CASK, peripheral plasma 92.2 0.075 2.6E-06 51.7 3.3 24 20-43 6-29 (180)
268 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.2 0.096 3.3E-06 43.3 3.5 63 730-795 8-70 (76)
269 3bfv_A CAPA1, CAPB2, membrane 92.0 0.19 6.4E-06 52.5 6.4 66 97-163 191-257 (271)
270 1xe1_A Hypothetical protein PF 92.0 0.49 1.7E-05 42.1 7.9 48 393-455 50-97 (116)
271 1u0l_A Probable GTPase ENGC; p 91.9 0.094 3.2E-06 55.7 4.0 22 20-41 170-191 (301)
272 3kjh_A CO dehydrogenase/acetyl 91.8 0.1 3.5E-06 53.1 4.0 65 96-162 130-195 (254)
273 3a00_A Guanylate kinase, GMP k 91.7 0.079 2.7E-06 51.8 2.8 24 20-43 2-25 (186)
274 3c8u_A Fructokinase; YP_612366 91.6 0.14 4.8E-06 51.0 4.7 26 17-42 20-45 (208)
275 1knq_A Gluconate kinase; ALFA/ 91.3 0.14 4.7E-06 49.2 4.1 28 17-44 6-33 (175)
276 3cio_A ETK, tyrosine-protein k 91.3 0.33 1.1E-05 51.4 7.3 66 97-163 213-279 (299)
277 3kb2_A SPBC2 prophage-derived 91.2 0.12 4E-06 49.3 3.4 25 20-44 2-26 (173)
278 3tr0_A Guanylate kinase, GMP k 91.1 0.11 3.7E-06 51.3 3.1 24 20-43 8-31 (205)
279 1znw_A Guanylate kinase, GMP k 91.0 0.11 3.7E-06 51.8 3.1 25 19-43 20-44 (207)
280 1ex7_A Guanylate kinase; subst 90.8 0.12 4.1E-06 50.8 3.1 24 20-43 2-25 (186)
281 3k9g_A PF-32 protein; ssgcid, 90.7 0.36 1.2E-05 49.9 6.9 66 96-163 143-210 (267)
282 2oze_A ORF delta'; para, walke 90.7 0.41 1.4E-05 50.3 7.4 66 96-163 153-225 (298)
283 3ney_A 55 kDa erythrocyte memb 90.7 0.16 5.3E-06 50.4 3.8 26 18-43 18-43 (197)
284 1xjc_A MOBB protein homolog; s 90.6 0.15 5E-06 49.3 3.4 25 18-42 3-27 (169)
285 1kag_A SKI, shikimate kinase I 90.5 0.14 4.9E-06 48.9 3.4 25 20-44 5-29 (173)
286 2xj4_A MIPZ; replication, cell 90.4 0.16 5.6E-06 53.3 4.0 35 97-133 103-137 (286)
287 1z6g_A Guanylate kinase; struc 90.4 0.13 4.5E-06 51.7 3.1 25 19-43 23-47 (218)
288 3asz_A Uridine kinase; cytidin 90.4 0.17 5.8E-06 50.2 3.9 25 18-42 5-29 (211)
289 1htw_A HI0065; nucleotide-bind 90.3 0.14 4.9E-06 48.8 3.1 26 18-43 32-57 (158)
290 1bif_A 6-phosphofructo-2-kinas 90.3 0.18 6E-06 57.2 4.3 25 19-43 39-63 (469)
291 1s96_A Guanylate kinase, GMP k 90.1 0.16 5.5E-06 51.3 3.4 25 19-43 16-40 (219)
292 3lw7_A Adenylate kinase relate 89.9 0.19 6.4E-06 47.8 3.6 24 20-44 2-25 (179)
293 1np6_A Molybdopterin-guanine d 89.9 0.18 6.3E-06 48.9 3.5 24 19-42 6-29 (174)
294 4gp7_A Metallophosphoesterase; 89.8 0.15 5.1E-06 49.1 2.8 20 20-39 10-29 (171)
295 3tau_A Guanylate kinase, GMP k 89.8 0.2 6.8E-06 49.9 3.8 25 19-43 8-32 (208)
296 3ea0_A ATPase, para family; al 89.7 0.32 1.1E-05 49.3 5.4 65 97-163 118-185 (245)
297 3vaa_A Shikimate kinase, SK; s 89.7 0.2 6.9E-06 49.4 3.7 27 18-44 24-50 (199)
298 1zd8_A GTP:AMP phosphotransfer 89.7 0.21 7.3E-06 50.3 4.0 27 18-44 6-32 (227)
299 2f1r_A Molybdopterin-guanine d 89.5 0.11 3.8E-06 50.3 1.6 23 20-42 3-25 (171)
300 2if2_A Dephospho-COA kinase; a 89.5 0.18 6.2E-06 49.7 3.3 22 20-41 2-23 (204)
301 2c95_A Adenylate kinase 1; tra 89.4 0.24 8.3E-06 48.2 4.1 26 19-44 9-34 (196)
302 4g1u_C Hemin import ATP-bindin 89.4 0.23 7.9E-06 51.7 4.1 20 20-39 38-57 (266)
303 2j41_A Guanylate kinase; GMP, 89.3 0.2 6.8E-06 49.3 3.4 24 19-42 6-29 (207)
304 3t61_A Gluconokinase; PSI-biol 89.2 0.22 7.6E-06 49.1 3.6 26 19-44 18-43 (202)
305 3zvl_A Bifunctional polynucleo 89.2 0.79 2.7E-05 50.9 8.5 24 19-42 258-281 (416)
306 1nks_A Adenylate kinase; therm 89.0 0.22 7.6E-06 48.2 3.5 23 20-42 2-24 (194)
307 2bdt_A BH3686; alpha-beta prot 88.9 0.21 7.1E-06 48.7 3.2 22 20-41 3-24 (189)
308 2pcj_A ABC transporter, lipopr 88.9 0.2 6.9E-06 50.7 3.1 20 20-39 31-50 (224)
309 1uf9_A TT1252 protein; P-loop, 88.8 0.31 1.1E-05 47.8 4.4 26 17-42 6-31 (203)
310 1mv5_A LMRA, multidrug resista 88.8 0.29 1E-05 50.1 4.3 21 19-39 28-48 (243)
311 3tif_A Uncharacterized ABC tra 88.8 0.19 6.3E-06 51.4 2.8 20 20-39 32-51 (235)
312 2qor_A Guanylate kinase; phosp 88.7 0.24 8.1E-06 49.1 3.4 25 19-43 12-36 (204)
313 3trf_A Shikimate kinase, SK; a 88.6 0.26 8.7E-06 47.7 3.6 26 19-44 5-30 (185)
314 2bbw_A Adenylate kinase 4, AK4 88.6 0.25 8.5E-06 50.5 3.6 28 19-46 27-54 (246)
315 2qt1_A Nicotinamide riboside k 88.6 0.27 9.2E-06 48.7 3.7 28 15-42 17-44 (207)
316 2qi9_C Vitamin B12 import ATP- 88.5 0.26 8.8E-06 50.8 3.6 20 20-39 27-46 (249)
317 1ukz_A Uridylate kinase; trans 88.3 0.34 1.2E-05 47.7 4.3 28 17-44 13-40 (203)
318 3b85_A Phosphate starvation-in 88.2 0.21 7.1E-06 50.0 2.7 22 21-42 24-45 (208)
319 2onk_A Molybdate/tungstate ABC 88.2 0.21 7.3E-06 51.1 2.8 21 20-40 25-45 (240)
320 1jjv_A Dephospho-COA kinase; P 88.2 0.25 8.6E-06 48.8 3.2 22 20-41 3-24 (206)
321 2bwj_A Adenylate kinase 5; pho 88.2 0.16 5.6E-06 49.7 1.8 25 20-44 13-37 (199)
322 3ec2_A DNA replication protein 88.1 0.23 7.9E-06 48.0 2.8 24 19-42 38-61 (180)
323 4fcw_A Chaperone protein CLPB; 88.0 2.3 7.9E-05 44.5 10.9 23 20-42 48-70 (311)
324 2eyu_A Twitching motility prot 88.0 0.28 9.5E-06 50.9 3.5 26 17-42 23-48 (261)
325 1ly1_A Polynucleotide kinase; 88.0 0.26 9E-06 47.2 3.1 22 20-41 3-24 (181)
326 2jeo_A Uridine-cytidine kinase 88.0 0.26 9.1E-06 50.3 3.3 27 18-44 24-50 (245)
327 1byi_A Dethiobiotin synthase; 87.9 1.6 5.4E-05 43.4 9.1 68 96-163 107-180 (224)
328 1cke_A CK, MSSA, protein (cyti 87.9 0.29 9.9E-06 49.0 3.5 25 20-44 6-30 (227)
329 1via_A Shikimate kinase; struc 87.8 0.28 9.7E-06 47.0 3.2 25 20-44 5-29 (175)
330 2jaq_A Deoxyguanosine kinase; 87.5 0.33 1.1E-05 47.5 3.6 24 21-44 2-25 (205)
331 2i3b_A HCR-ntpase, human cance 87.5 0.29 1E-05 48.1 3.1 22 21-42 3-24 (189)
332 3iij_A Coilin-interacting nucl 87.4 0.36 1.2E-05 46.5 3.7 27 18-44 10-36 (180)
333 1b0u_A Histidine permease; ABC 87.3 0.26 8.7E-06 51.2 2.8 20 20-39 33-52 (262)
334 2pze_A Cystic fibrosis transme 87.3 0.26 8.9E-06 50.0 2.8 20 20-39 35-54 (229)
335 2d2e_A SUFC protein; ABC-ATPas 87.3 0.26 8.9E-06 50.7 2.8 22 20-41 30-51 (250)
336 2cbz_A Multidrug resistance-as 87.3 0.26 9E-06 50.3 2.8 20 20-39 32-51 (237)
337 1g6h_A High-affinity branched- 87.3 0.26 8.9E-06 51.0 2.8 20 20-39 34-53 (257)
338 3uie_A Adenylyl-sulfate kinase 87.3 0.5 1.7E-05 46.5 4.8 25 18-42 24-48 (200)
339 3aez_A Pantothenate kinase; tr 87.3 0.37 1.3E-05 51.4 4.0 25 17-41 88-112 (312)
340 3dl0_A Adenylate kinase; phosp 87.3 0.36 1.2E-05 48.1 3.7 24 21-44 2-25 (216)
341 3fb4_A Adenylate kinase; psych 87.2 0.34 1.2E-05 48.2 3.6 24 21-44 2-25 (216)
342 2v9p_A Replication protein E1; 87.2 0.4 1.4E-05 50.9 4.2 26 17-42 124-149 (305)
343 1qhx_A CPT, protein (chloramph 87.2 0.36 1.2E-05 46.2 3.6 24 20-43 4-27 (178)
344 3gfo_A Cobalt import ATP-bindi 87.2 0.27 9.1E-06 51.5 2.8 20 20-39 35-54 (275)
345 3tlx_A Adenylate kinase 2; str 87.1 0.51 1.8E-05 48.2 4.9 28 17-44 27-54 (243)
346 1sgw_A Putative ABC transporte 87.1 0.28 9.5E-06 49.3 2.8 19 21-39 37-55 (214)
347 1y63_A LMAJ004144AAA protein; 87.0 0.42 1.4E-05 46.4 4.0 24 19-42 10-33 (184)
348 3cm0_A Adenylate kinase; ATP-b 87.0 0.39 1.3E-05 46.4 3.7 26 19-44 4-29 (186)
349 1ji0_A ABC transporter; ATP bi 87.0 0.28 9.6E-06 50.1 2.8 20 20-39 33-52 (240)
350 3pfi_A Holliday junction ATP-d 86.9 2.5 8.5E-05 45.0 10.5 26 17-42 53-78 (338)
351 2ff7_A Alpha-hemolysin translo 86.9 0.28 9.7E-06 50.4 2.8 20 20-39 36-55 (247)
352 1rz3_A Hypothetical protein rb 86.9 0.48 1.7E-05 46.7 4.4 25 17-41 20-44 (201)
353 4a74_A DNA repair and recombin 86.8 0.35 1.2E-05 48.3 3.4 36 7-42 12-48 (231)
354 1qf9_A UMP/CMP kinase, protein 86.8 0.51 1.7E-05 45.6 4.5 25 20-44 7-31 (194)
355 2rcn_A Probable GTPase ENGC; Y 86.7 0.32 1.1E-05 52.8 3.2 23 20-42 216-238 (358)
356 2rhm_A Putative kinase; P-loop 86.7 0.48 1.6E-05 45.9 4.2 26 19-44 5-30 (193)
357 1zuh_A Shikimate kinase; alpha 86.7 0.38 1.3E-05 45.7 3.4 27 18-44 6-32 (168)
358 2olj_A Amino acid ABC transpor 86.6 0.3 1E-05 50.7 2.8 20 20-39 51-70 (263)
359 3fgn_A Dethiobiotin synthetase 86.6 2 6.8E-05 44.1 8.9 66 96-161 125-197 (251)
360 2ghi_A Transport protein; mult 86.6 0.3 1E-05 50.6 2.8 21 20-40 47-67 (260)
361 1nij_A Hypothetical protein YJ 86.5 0.4 1.4E-05 51.2 3.8 26 18-43 3-28 (318)
362 2zu0_C Probable ATP-dependent 86.5 0.31 1E-05 50.8 2.8 21 20-40 47-67 (267)
363 1kht_A Adenylate kinase; phosp 86.4 0.35 1.2E-05 46.8 3.0 23 20-42 4-26 (192)
364 2vhj_A Ntpase P4, P4; non- hyd 86.4 0.65 2.2E-05 49.5 5.2 23 20-42 124-146 (331)
365 2ehv_A Hypothetical protein PH 86.3 0.33 1.1E-05 49.2 2.9 21 20-40 31-51 (251)
366 2kjq_A DNAA-related protein; s 86.3 0.33 1.1E-05 45.6 2.7 25 18-42 35-59 (149)
367 3lnc_A Guanylate kinase, GMP k 86.3 0.24 8.1E-06 50.1 1.8 23 20-42 28-51 (231)
368 1tev_A UMP-CMP kinase; ploop, 86.3 0.44 1.5E-05 46.1 3.7 25 20-44 4-28 (196)
369 1odf_A YGR205W, hypothetical 3 86.3 0.65 2.2E-05 48.9 5.2 26 17-42 29-54 (290)
370 1vpl_A ABC transporter, ATP-bi 86.2 0.32 1.1E-05 50.3 2.8 20 20-39 42-61 (256)
371 3tqc_A Pantothenate kinase; bi 85.9 0.43 1.5E-05 51.0 3.6 25 18-42 91-115 (321)
372 2v1u_A Cell division control p 85.9 2.5 8.5E-05 45.5 10.0 26 17-42 42-67 (387)
373 2yz2_A Putative ABC transporte 85.9 0.34 1.2E-05 50.4 2.8 20 20-39 34-53 (266)
374 2ze6_A Isopentenyl transferase 85.9 0.45 1.5E-05 49.0 3.7 25 20-44 2-26 (253)
375 2gza_A Type IV secretion syste 85.8 0.37 1.3E-05 52.5 3.1 24 19-42 175-198 (361)
376 2ixe_A Antigen peptide transpo 85.8 0.35 1.2E-05 50.5 2.8 20 20-39 46-65 (271)
377 3jvv_A Twitching mobility prot 85.8 0.42 1.4E-05 52.0 3.5 23 20-42 124-146 (356)
378 2ihy_A ABC transporter, ATP-bi 85.7 0.35 1.2E-05 50.7 2.8 20 20-39 48-67 (279)
379 1jbk_A CLPB protein; beta barr 85.7 0.73 2.5E-05 44.0 4.9 26 17-42 41-66 (195)
380 3kta_A Chromosome segregation 85.6 0.5 1.7E-05 45.5 3.7 24 21-44 28-51 (182)
381 3hr8_A Protein RECA; alpha and 85.5 1.5 5E-05 47.6 7.6 25 18-42 60-84 (356)
382 2nq2_C Hypothetical ABC transp 85.5 0.36 1.2E-05 49.8 2.7 19 21-39 33-51 (253)
383 2wwf_A Thymidilate kinase, put 85.5 0.44 1.5E-05 47.0 3.3 24 19-42 10-33 (212)
384 2oap_1 GSPE-2, type II secreti 85.5 0.35 1.2E-05 55.2 2.8 24 19-42 260-283 (511)
385 1aky_A Adenylate kinase; ATP:A 85.5 0.5 1.7E-05 47.2 3.7 26 19-44 4-29 (220)
386 4e22_A Cytidylate kinase; P-lo 85.3 0.5 1.7E-05 48.5 3.7 26 19-44 27-52 (252)
387 2pt7_A CAG-ALFA; ATPase, prote 85.2 0.33 1.1E-05 52.2 2.3 23 20-42 172-194 (330)
388 1sq5_A Pantothenate kinase; P- 85.2 0.57 1.9E-05 49.7 4.2 26 17-42 78-103 (308)
389 2vli_A Antibiotic resistance p 85.0 0.43 1.5E-05 45.9 2.9 26 19-44 5-30 (183)
390 1zak_A Adenylate kinase; ATP:A 85.0 0.55 1.9E-05 47.0 3.7 26 19-44 5-30 (222)
391 2yvu_A Probable adenylyl-sulfa 84.9 0.55 1.9E-05 45.5 3.6 25 18-42 12-36 (186)
392 3fvq_A Fe(3+) IONS import ATP- 84.8 0.44 1.5E-05 51.8 3.1 21 20-40 31-51 (359)
393 2plr_A DTMP kinase, probable t 84.8 0.55 1.9E-05 46.2 3.7 25 20-44 5-29 (213)
394 1e4v_A Adenylate kinase; trans 84.8 0.59 2E-05 46.5 3.8 24 21-44 2-25 (214)
395 2v54_A DTMP kinase, thymidylat 84.7 0.46 1.6E-05 46.6 3.0 23 20-42 5-27 (204)
396 1e6c_A Shikimate kinase; phosp 84.6 0.49 1.7E-05 45.0 3.0 25 20-44 3-27 (173)
397 2bbs_A Cystic fibrosis transme 84.4 0.47 1.6E-05 50.0 3.1 20 20-39 65-84 (290)
398 3n70_A Transport activator; si 84.4 2.1 7.2E-05 39.6 7.3 25 17-41 22-46 (145)
399 2ewv_A Twitching motility prot 84.3 0.51 1.8E-05 51.6 3.4 25 18-42 135-159 (372)
400 1hqc_A RUVB; extended AAA-ATPa 84.3 3.7 0.00013 43.2 10.1 25 18-42 37-61 (324)
401 3umf_A Adenylate kinase; rossm 84.2 0.72 2.5E-05 46.3 4.2 29 17-45 27-55 (217)
402 3tui_C Methionine import ATP-b 84.2 0.44 1.5E-05 51.8 2.8 21 20-40 55-75 (366)
403 3sr0_A Adenylate kinase; phosp 84.2 0.6 2E-05 46.5 3.5 26 21-46 2-27 (206)
404 2iyv_A Shikimate kinase, SK; t 84.1 0.53 1.8E-05 45.4 3.1 24 21-44 4-27 (184)
405 2pt5_A Shikimate kinase, SK; a 84.1 0.61 2.1E-05 44.1 3.4 24 21-44 2-25 (168)
406 1nn5_A Similar to deoxythymidy 84.1 0.61 2.1E-05 46.0 3.6 24 19-42 9-32 (215)
407 2pjz_A Hypothetical protein ST 84.0 0.5 1.7E-05 49.0 3.0 19 21-39 32-50 (263)
408 1gtv_A TMK, thymidylate kinase 84.0 0.32 1.1E-05 48.2 1.4 22 21-42 2-23 (214)
409 2cdn_A Adenylate kinase; phosp 84.0 0.7 2.4E-05 45.3 3.9 26 19-44 20-45 (201)
410 2pbr_A DTMP kinase, thymidylat 84.0 0.54 1.8E-05 45.5 3.1 22 21-42 2-23 (195)
411 1sxj_A Activator 1 95 kDa subu 83.8 3.1 0.0001 47.5 9.8 26 19-44 77-102 (516)
412 2p5t_B PEZT; postsegregational 83.7 0.64 2.2E-05 47.7 3.7 28 17-44 30-57 (253)
413 2ga8_A Hypothetical 39.9 kDa p 83.7 0.87 3E-05 49.2 4.8 27 17-43 22-48 (359)
414 1uj2_A Uridine-cytidine kinase 83.6 0.72 2.5E-05 47.2 4.0 27 18-44 21-47 (252)
415 1z47_A CYSA, putative ABC-tran 83.5 0.5 1.7E-05 51.3 2.8 21 20-40 42-62 (355)
416 2yyz_A Sugar ABC transporter, 83.4 0.5 1.7E-05 51.3 2.8 21 20-40 30-50 (359)
417 2pez_A Bifunctional 3'-phospho 83.4 0.6 2.1E-05 44.9 3.1 24 19-42 5-28 (179)
418 2x8a_A Nuclear valosin-contain 83.2 0.67 2.3E-05 48.3 3.6 24 20-43 45-68 (274)
419 2grj_A Dephospho-COA kinase; T 83.2 0.86 2.9E-05 44.8 4.2 28 17-44 10-37 (192)
420 2f6r_A COA synthase, bifunctio 83.2 0.72 2.5E-05 48.3 3.8 23 18-40 74-96 (281)
421 1lw7_A Transcriptional regulat 83.2 0.51 1.7E-05 51.4 2.8 25 19-43 170-194 (365)
422 2chg_A Replication factor C sm 83.2 6.9 0.00024 37.9 11.0 25 18-42 37-61 (226)
423 2it1_A 362AA long hypothetical 83.1 0.52 1.8E-05 51.2 2.8 21 20-40 30-50 (362)
424 1ak2_A Adenylate kinase isoenz 83.0 0.75 2.6E-05 46.4 3.8 28 17-44 14-41 (233)
425 1p9r_A General secretion pathw 83.0 0.65 2.2E-05 51.6 3.5 26 18-43 166-191 (418)
426 2z0h_A DTMP kinase, thymidylat 83.0 0.57 2E-05 45.5 2.8 22 21-42 2-23 (197)
427 3nwj_A ATSK2; P loop, shikimat 82.9 0.65 2.2E-05 47.8 3.2 26 19-44 48-73 (250)
428 1g29_1 MALK, maltose transport 82.8 0.54 1.9E-05 51.3 2.8 21 20-40 30-50 (372)
429 3rlf_A Maltose/maltodextrin im 82.8 0.55 1.9E-05 51.4 2.8 21 20-40 30-50 (381)
430 1f2t_A RAD50 ABC-ATPase; DNA d 82.8 0.67 2.3E-05 43.5 3.1 22 21-42 25-46 (149)
431 1gvn_B Zeta; postsegregational 82.8 0.76 2.6E-05 48.3 3.8 26 18-43 32-57 (287)
432 1vht_A Dephospho-COA kinase; s 82.7 0.72 2.5E-05 45.9 3.5 22 20-41 5-26 (218)
433 1v43_A Sugar-binding transport 82.6 0.56 1.9E-05 51.2 2.8 21 20-40 38-58 (372)
434 2rcn_A Probable GTPase ENGC; Y 82.6 1.4 4.9E-05 47.6 6.0 44 118-163 127-173 (358)
435 2b8t_A Thymidine kinase; deoxy 82.6 1.1 3.7E-05 45.2 4.7 41 123-163 89-129 (223)
436 3bos_A Putative DNA replicatio 82.5 1 3.4E-05 45.0 4.5 25 18-42 51-75 (242)
437 2zr9_A Protein RECA, recombina 82.5 1.6 5.6E-05 47.1 6.4 25 18-42 60-84 (349)
438 3a4m_A L-seryl-tRNA(SEC) kinas 82.5 0.68 2.3E-05 47.7 3.3 24 19-42 4-27 (260)
439 3nh6_A ATP-binding cassette SU 82.5 0.4 1.4E-05 50.9 1.5 21 20-40 81-101 (306)
440 1ixz_A ATP-dependent metallopr 82.5 0.74 2.5E-05 47.0 3.6 23 20-42 50-72 (254)
441 2p65_A Hypothetical protein PF 82.4 0.88 3E-05 43.3 3.9 26 17-42 41-66 (187)
442 2w58_A DNAI, primosome compone 82.4 1.1 3.7E-05 43.9 4.6 23 20-42 55-77 (202)
443 3syl_A Protein CBBX; photosynt 82.2 2.8 9.5E-05 43.9 8.0 26 17-42 65-90 (309)
444 3cmu_A Protein RECA, recombina 81.7 3 0.0001 54.8 9.3 27 17-43 1425-1451(2050)
445 2vp4_A Deoxynucleoside kinase; 81.7 0.64 2.2E-05 46.9 2.6 24 18-41 19-42 (230)
446 1njg_A DNA polymerase III subu 81.6 1.2 4.1E-05 44.1 4.7 34 9-42 35-68 (250)
447 3be4_A Adenylate kinase; malar 81.6 0.89 3E-05 45.3 3.6 25 20-44 6-30 (217)
448 3gd7_A Fusion complex of cysti 81.5 0.7 2.4E-05 50.8 3.1 21 20-40 48-68 (390)
449 2wbm_A MTHSBDS, ribosome matur 81.4 2.2 7.6E-05 43.3 6.4 67 728-796 183-249 (252)
450 2xb4_A Adenylate kinase; ATP-b 81.2 0.9 3.1E-05 45.6 3.6 24 21-44 2-25 (223)
451 2w0m_A SSO2452; RECA, SSPF, un 81.1 0.88 3E-05 45.3 3.5 36 7-42 10-46 (235)
452 3d31_A Sulfate/molybdate ABC t 80.8 0.49 1.7E-05 51.2 1.4 21 20-40 27-47 (348)
453 1tue_A Replication protein E1; 80.4 1.1 3.7E-05 44.5 3.7 24 19-42 58-81 (212)
454 1iy2_A ATP-dependent metallopr 80.3 0.99 3.4E-05 46.9 3.6 23 20-42 74-96 (278)
455 2npi_A Protein CLP1; CLP1-PCF1 80.3 0.87 3E-05 51.2 3.4 24 19-42 138-161 (460)
456 1m7g_A Adenylylsulfate kinase; 79.9 0.94 3.2E-05 44.9 3.2 24 18-41 24-47 (211)
457 1u94_A RECA protein, recombina 79.7 2.2 7.5E-05 46.2 6.2 25 18-42 62-86 (356)
458 1q3t_A Cytidylate kinase; nucl 79.6 1.2 4.1E-05 45.0 3.9 28 17-44 14-41 (236)
459 3qf7_A RAD50; ABC-ATPase, ATPa 79.3 0.93 3.2E-05 49.4 3.1 22 21-42 25-46 (365)
460 1in4_A RUVB, holliday junction 79.2 1 3.5E-05 48.3 3.4 27 18-44 50-76 (334)
461 1cr0_A DNA primase/helicase; R 79.2 1.1 3.7E-05 47.0 3.5 26 17-42 33-58 (296)
462 1oxx_K GLCV, glucose, ABC tran 79.1 0.49 1.7E-05 51.4 0.8 21 20-40 32-52 (353)
463 2cvh_A DNA repair and recombin 79.1 1.6 5.4E-05 43.1 4.5 35 7-41 7-42 (220)
464 3r20_A Cytidylate kinase; stru 79.1 1.2 3.9E-05 45.3 3.5 25 20-44 10-34 (233)
465 1lv7_A FTSH; alpha/beta domain 79.1 1.1 3.8E-05 45.8 3.5 24 19-42 45-68 (257)
466 3h4m_A Proteasome-activating n 79.1 1.4 4.9E-05 45.6 4.4 27 17-43 49-75 (285)
467 1svm_A Large T antigen; AAA+ f 79.1 1.4 4.8E-05 48.1 4.4 26 17-42 167-192 (377)
468 4a1f_A DNAB helicase, replicat 78.9 1.8 6.2E-05 46.5 5.2 34 9-42 36-69 (338)
469 3ake_A Cytidylate kinase; CMP 78.7 1.2 4E-05 43.6 3.4 24 21-44 4-27 (208)
470 3foz_A TRNA delta(2)-isopenten 78.7 1.5 5E-05 46.5 4.3 26 19-44 10-35 (316)
471 3d3q_A TRNA delta(2)-isopenten 78.4 1.4 4.6E-05 47.4 3.9 25 20-44 8-32 (340)
472 3u61_B DNA polymerase accessor 78.4 9.3 0.00032 40.2 10.7 24 19-42 47-71 (324)
473 1t95_A Hypothetical protein AF 78.3 2.6 9E-05 42.5 5.8 67 729-797 169-235 (240)
474 3euj_A Chromosome partition pr 78.2 1 3.5E-05 50.8 3.1 23 20-42 30-52 (483)
475 3ug7_A Arsenical pump-driving 78.1 5.2 0.00018 43.1 8.6 42 122-163 237-279 (349)
476 4eaq_A DTMP kinase, thymidylat 78.1 1.5 5.3E-05 44.2 4.1 27 17-43 24-50 (229)
477 1xp8_A RECA protein, recombina 77.9 4.1 0.00014 44.2 7.7 25 19-43 74-98 (366)
478 2qby_A CDC6 homolog 1, cell di 77.7 1.7 5.7E-05 46.9 4.5 26 17-42 43-68 (386)
479 2obl_A ESCN; ATPase, hydrolase 77.6 1.3 4.6E-05 47.7 3.7 25 19-43 71-95 (347)
480 1d1n_A Initiation factor 2; be 77.4 4.7 0.00016 34.8 6.3 63 382-455 13-75 (99)
481 1r6b_X CLPA protein; AAA+, N-t 77.4 18 0.00063 43.0 14.0 26 18-43 487-512 (758)
482 3cf0_A Transitional endoplasmi 77.0 1.8 6E-05 45.6 4.4 27 17-43 47-73 (301)
483 3ez9_A Para; DNA binding, wing 77.0 3.1 0.00011 45.7 6.6 65 96-162 246-322 (403)
484 3pg5_A Uncharacterized protein 76.8 2.4 8.3E-05 45.9 5.5 35 97-133 153-187 (361)
485 1n0w_A DNA repair protein RAD5 76.6 1.3 4.4E-05 44.5 3.1 36 7-42 11-47 (243)
486 3crm_A TRNA delta(2)-isopenten 76.6 1.6 5.5E-05 46.5 3.8 25 20-44 6-30 (323)
487 1qvr_A CLPB protein; coiled co 75.9 12 0.00042 45.3 12.1 24 19-42 588-611 (854)
488 1ltq_A Polynucleotide kinase; 75.9 1.4 4.7E-05 46.2 3.1 22 20-41 3-24 (301)
489 1a7j_A Phosphoribulokinase; tr 75.5 0.9 3.1E-05 47.8 1.5 23 19-41 5-27 (290)
490 1nlf_A Regulatory protein REPA 75.1 1.7 5.8E-05 45.1 3.6 22 20-41 31-52 (279)
491 2dpy_A FLII, flagellum-specifi 75.0 1.6 5.6E-05 48.7 3.6 27 17-43 155-181 (438)
492 3pvs_A Replication-associated 74.8 11 0.00037 42.0 10.3 26 18-43 49-74 (447)
493 3qks_A DNA double-strand break 74.7 1.6 5.5E-05 43.1 3.1 23 21-43 25-47 (203)
494 1sxj_E Activator 1 40 kDa subu 74.6 1.8 6.3E-05 46.3 3.8 25 17-41 34-58 (354)
495 3b60_A Lipid A export ATP-bind 74.2 1.6 5.3E-05 50.8 3.3 21 20-40 370-390 (582)
496 1yqt_A RNAse L inhibitor; ATP- 74.1 1.5 5E-05 50.5 3.0 22 20-41 48-69 (538)
497 3of5_A Dethiobiotin synthetase 74.1 8.2 0.00028 38.7 8.3 68 96-163 109-182 (228)
498 2ocp_A DGK, deoxyguanosine kin 74.1 1.9 6.5E-05 43.6 3.6 24 20-43 3-26 (241)
499 1l8q_A Chromosomal replication 74.1 2.2 7.4E-05 45.3 4.1 25 18-42 36-60 (324)
500 3b5x_A Lipid A export ATP-bind 74.0 1.4 4.9E-05 51.1 2.9 23 19-41 369-391 (582)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=6.8e-156 Score=1420.83 Aligned_cols=840 Identities=62% Similarity=1.038 Sum_probs=755.4
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe
Q 003166 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|+.++.+++.++|...+++|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+||.++.+++.|.
T Consensus 1 ~~~~~~~~~~~~m~~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~ 80 (842)
T 1n0u_A 1 MVAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80 (842)
T ss_dssp --CBCHHHHHHHHHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEE
T ss_pred CcccCHHHHHHHhhCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEec
Confidence 78999999999999888999999999999999999999999999887765666789999999999999999999999886
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcC
Q 003166 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~ 160 (843)
........+....+++++.+||||||||.||..++.++++.+|+||+|+|+++|++.|+..+|+++...++|+++|+||+
T Consensus 81 ~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~ 160 (842)
T 1n0u_A 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKV 160 (842)
T ss_dssp CCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECH
T ss_pred ccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 22111111111234457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHH
Q 003166 161 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|+...+++.++++++..+++++++++..+..+.+...+++.+.|..++|+|+|+.+||+|++.+|++.|..+|+++...+
T Consensus 161 D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l 240 (842)
T 1n0u_A 161 DRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKM 240 (842)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHH
T ss_pred CcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHH
Confidence 99988888999999999999999999998776554445566889999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCceeecC--CCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHH
Q 003166 241 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 318 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
.+++||+.||+.++++|...+ .++...++.|++++++|+|+|++++++.|+++|++||+++|++++.+|++...++|+
T Consensus 241 ~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~ 320 (842)
T 1n0u_A 241 MDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALL 320 (842)
T ss_dssp HHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHH
T ss_pred HHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHH
Confidence 999999999988777776654 223345789999999999999999999999999999999999999999887889999
Q ss_pred HHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003166 319 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
++++++|+|++++|||+|++|+|||.+++.++...+|.|+.+++....++.||+++|++|+|||+..+++.|++++|+||
T Consensus 321 ~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV 400 (842)
T 1n0u_A 321 KVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEE
T ss_pred HHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEE
Confidence 99999999999999999999999999998888887777754433334567899999999999999999999977999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003166 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 478 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~~~~~~~~ 478 (843)
|||+|++|+.|+++++++++++.+++..+||++|++++|+++++|++|.|||||+|.||+++.++|||||+... +.++
T Consensus 401 ~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~--~~~l 478 (842)
T 1n0u_A 401 FAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSET--AHNM 478 (842)
T ss_dssp EESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTT--CCCB
T ss_pred EeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCC--cccc
Confidence 99999999999999888776654444458999999999999999999999999999999998778889998777 7788
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCCeeEEEc
Q 003166 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
+++.++.+|+++++|+|+++.|++||.+||++|.+|||+|+++.+||||++|+||||||||||++||+++| +|++++++
T Consensus 479 ~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f-~~vev~~~ 557 (842)
T 1n0u_A 479 KVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDH-AGVPLKIS 557 (842)
T ss_dssp CCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTT-SCSCEEEE
T ss_pred ccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHh-cCCceEec
Confidence 99988757999999999999999999999999999999999999999999999999999999999999999 79999999
Q ss_pred CCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEec
Q 003166 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (843)
+|+|+|||||+++++..++.+++++|+++++++|||+.++...++.|.+...++.+++...|..+|+||...++++|+||
T Consensus 558 ~P~V~yrETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~ 637 (842)
T 1n0u_A 558 PPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFG 637 (842)
T ss_dssp CCCCCCEEEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEES
T ss_pred CcEEEEEEeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeec
Confidence 99999999999999888888999999999999999999999999999888778888999999999999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003166 639 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~ 718 (843)
|+..|+|+|+|.++|++++++++++|++||++|+++|||||+||+||+|+|+|+++|.|+++++++||++|+++||++|+
T Consensus 638 p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~ 717 (842)
T 1n0u_A 638 PDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGF 717 (842)
T ss_dssp STTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHH
Confidence 98778999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred hhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeE
Q 003166 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|||+||++++|+|++||++|||+|+++++.+|+++++|+|++|++|||||+++|||+|||+|+|+|+
T Consensus 718 ~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~ 797 (842)
T 1n0u_A 718 LLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMV 797 (842)
T ss_dssp HHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred HhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEE
Confidence 99999999999999999999999999999999999999999877777899999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003166 799 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 843 (843)
Q Consensus 799 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
|+||++||+||++++|+|+++++++||||||++++|.+.+|+|+|
T Consensus 798 F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl~~~~p~~~~~~d~~ 842 (842)
T 1n0u_A 798 FDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842 (842)
T ss_dssp EEEEEECCSCTTCTTSHHHHHHHHHHHHTTCCSSCCCGGGGCCCC
T ss_pred eccceeCCCCccchhhHHHHHHHHHHHhCCCCCCCCCHHHhccCC
Confidence 999999999999999999999999999999999999999999997
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.5e-123 Score=1117.26 Aligned_cols=671 Identities=28% Similarity=0.396 Sum_probs=528.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
++||||||+||+|||||||+++||+++|.+.+. ..+..+++|++++|++|||||+++.+++.|.. ...+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~---------~~~~ 81 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKG---------SRGQ 81 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECC---------TTSC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEecc---------CcCC
Confidence 689999999999999999999999999998762 11225799999999999999999999999962 1123
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHH
Q 003166 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~ 174 (843)
.+++.|||||||||+||..|+.++|+.+||||+||||++||++||+.+|++|.++++|+|+|||||||. +++
T Consensus 82 ~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~----~a~---- 153 (709)
T 4fn5_A 82 YDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ----GAN---- 153 (709)
T ss_dssp SCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST----TCC----
T ss_pred CCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc----Ccc----
Confidence 357999999999999999999999999999999999999999999999999999999999999999999 887
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCC
Q 003166 175 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
+...+++++..+.. .+...+++++++ +.|+ +|+..+..++|++...
T Consensus 154 ---~~~~~~ei~~~l~~-----------~~~~~~~pi~~~~~~~g~----------------vd~~~~~~~~~~~~~~-- 201 (709)
T 4fn5_A 154 ---FLRVVEQIKKRLGH-----------TPVPVQLAIGAEENFVGQ----------------VDLIKMKAIYWNDDDK-- 201 (709)
T ss_dssp ---HHHHHHHHHHHHCS-----------CEEESEEEESSSTTCCEE----------------EETTTTEEEEEEC--C--
T ss_pred ---HHHHHHHhhhhccc-----------ceeeeecccCchhccceE----------------EEEeeeeEEEeecccC--
Confidence 44555555555532 233346677654 3343 2333444556654221
Q ss_pred CCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc---
Q 003166 253 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA--- 328 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~--- 328 (843)
+..+...+ ....+.+.....+..+++.+++.|++++++|+++ .+++.+++. ..+.+... .+++|+
T Consensus 202 -g~~~~~~~-----~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~--~~~~~~~~~---~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 202 -GMTYREEE-----IPAELKDLAEEWRSSMVEAAAEANEELMNKYLEE--GELSEAEIK---EGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp -CCEEEECC-----CCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHH--SCCCHHHHH---HHHHHHHHTTSCEEEEEC
T ss_pred -Cceecccc-----ccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCccHHHHH---HHHHHhhhhceeeeeeee
Confidence 11222221 2234455555566788999999999999999998 678888775 44555544 577886
Q ss_pred -------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEee
Q 003166 329 -------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSG 401 (843)
Q Consensus 329 -------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG 401 (843)
++.|||+|++++|||.+++..+... ..++.....+.||+++|++++|||+..+++.|. ++|+|||||
T Consensus 271 sa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~-----~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~-la~~RV~sG 344 (709)
T 4fn5_A 271 SSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVS-----PDDETVEDERHADDNEPFSSLAFKIATDPFVGT-LTFARVYSG 344 (709)
T ss_dssp BTTTTBTHHHHHHHHHHHSCCTTSSCCEECBC-----CC-CCSCCEECSCTTSCCEEEEEECCCBTTTBC-CCEEEEEES
T ss_pred ecccCCchHHHHHHHHhhCCCCcccccccccC-----CccccccccccCCccCcceEEEEEeecccCCCc-eEEEeccCC
Confidence 6899999999999998876554322 123334456789999999999999999999887 999999999
Q ss_pred EecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccc
Q 003166 402 KVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRA 480 (843)
Q Consensus 402 ~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~ 480 (843)
+|++||.|++ .+++++ +++++|+.++|+++++|++|+|||||+|.|++++ .+| |||+.+. +..+++
T Consensus 345 tl~~G~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~--~~gdTl~~~~~--~~~~~~ 411 (709)
T 4fn5_A 345 VLSSGDSVLN----SVKGKK-----ERVGRMVQMHANQREEIKEVRAGDIAALIGMKDV--TTGDTLCSIEK--PIILER 411 (709)
T ss_dssp CEETTCBCBC----TTTCCC-----CBCCCEECCCSSCCCEESEECTTCEEEECSCSSC--CTTCEEECSSS--CCBCC-
T ss_pred CCCCCCEEEE----ecCCcE-----EeecceeEeecceeeEeeeecCCCeeeecCCCcC--ccCCEecCCCc--cccCCC
Confidence 9999999994 444443 7999999999999999999999999999999886 677 9999887 778888
Q ss_pred cccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcC
Q 003166 481 MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 481 ~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
+.++ +|+++++|+|.+++|++||.+||++|.+|||+|+++.+ +|||++|+||||||||||++||+++| |+++++++
T Consensus 412 ~~~~-~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~--gvev~vs~ 488 (709)
T 4fn5_A 412 MDFP-EPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREF--GVEANIGK 488 (709)
T ss_dssp ---C-CCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTT--CCCBCCBC
T ss_pred CCCC-CcceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHh--CceEEEee
Confidence 8886 99999999999999999999999999999999999986 89999999999999999999999999 99999999
Q ss_pred CeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcC--CcccccceEEEe
Q 003166 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFG--WDKDLAKKIWCF 637 (843)
Q Consensus 560 p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~--~~~~~~~~i~~~ 637 (843)
|+|+|||||++.+. +..++|++ ++|+. +||+ |.......+|.+
T Consensus 489 P~V~yrETi~~~~~-----~~~~~~~k----------------~~~~~--------------~~~~~~~~~~~~~~~~e~ 533 (709)
T 4fn5_A 489 PQVAYRETITKDNV-----EIEGKFVR----------------QSGGR--------------GQFGHCWIRFSAADVDEK 533 (709)
T ss_dssp CCCCCEEECCCCSE-----EEEEEEEE----------------EETTE--------------EEEEEEEEEEECCCBC-C
T ss_pred ceEEEEEEEecCCc-----eecceeee----------------ccCCc--------------CcceeEEEEEeecccccc
Confidence 99999999987542 11223322 22221 2222 111112223444
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHH
Q 003166 638 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 638 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a 717 (843)
+|.. .++.|.|.+.|..++++++++|++||+||+++|||||+||+||+|+|.|+++|.+.++.. .+..|+++||++|
T Consensus 534 g~~~-~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~--~f~~a~~~a~~~a 610 (709)
T 4fn5_A 534 GNIT-EGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEM--AFKIAASMATKQL 610 (709)
T ss_dssp CCBC-CEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHH--HHHHHHHHHHHTH
T ss_pred CCCc-CceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChH--HHHHHHHHHHHHH
Confidence 4432 358999999999999999999999999999999999999999999999999998433332 2456999999999
Q ss_pred HhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeee
Q 003166 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 797 (843)
Q Consensus 718 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||.|+|+||++++|+|+++|++|||+|++++..++ ..+|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 611 ~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~--~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 611 AQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVS--GKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp HHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSS--EEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred HHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCC--CEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 9999999999999999999999999999999999999999987764 67899999999999999999999999999999
Q ss_pred EecceeecCCCC
Q 003166 798 VFDHWDMMSSDP 809 (843)
Q Consensus 798 ~f~~y~~v~~d~ 809 (843)
+|+||++||+|+
T Consensus 689 ~F~~y~~vp~~~ 700 (709)
T 4fn5_A 689 EFSKYAEAPSNI 700 (709)
T ss_dssp CEEEEEECCHHH
T ss_pred EECCcccCCcCH
Confidence 999999999985
No 3
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=1.4e-114 Score=1038.43 Aligned_cols=672 Identities=28% Similarity=0.368 Sum_probs=563.9
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
..+++|||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.+.|++||+|+.++..++.|...
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~--------- 75 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG-AATMDWMEQEQERGITITSAATTAFWSGM--------- 75 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCC-ceeecChhhHHhcCceeeeceEEEEECCc---------
Confidence 45779999999999999999999999998877652 122 47899999999999999999988888610
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCH
Q 003166 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~ 171 (843)
..+++.+.+||||||||.||..++.++++.+|+||+|||+++|++.||+.+|+++...++|+++|+||+|+. ++++
T Consensus 76 ~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~----~~~~ 151 (704)
T 2rdo_7 76 AKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM----GANF 151 (704)
T ss_pred cccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcc----cccH
Confidence 012345899999999999999999999999999999999999999999999999999999999999999999 7764
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003166 172 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
+ +++++++..+.. .+...++|++.+ +.|+ +|+..+..++|.+.
T Consensus 152 ~-------~~~~~l~~~l~~-----------~~~~~~~Pi~~~~~f~g~----------------~dl~~~~~~~~~~~- 196 (704)
T 2rdo_7 152 L-------KVVNQIKTRLGA-----------NPVPLQLAIGAEEHFTGV----------------VDLVKMKAINWNDA- 196 (704)
T ss_pred H-------HHHHHHHHHhCC-----------CceeEEccccccccccce----------------eehhhhhhhcccCc-
Confidence 4 444444444421 111224555433 2222 56677777777421
Q ss_pred cCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003166 250 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
..+.++...+ ....+.+++.+++++|++++++.|+++|++||++ .+++.+++. ++++++++ ++|+|+
T Consensus 197 --~~g~~~~~~~-----~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~--~~l~~~~l~---~~l~~~~~~~~~~Pv 264 (704)
T 2rdo_7 197 --DQGVTFEYED-----IPADMVELANEWHQNLIESAAEASEELMEKYLGG--EELTEAEIK---GALRQRVLNNEIILV 264 (704)
T ss_pred --cCCcceEEec-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 0122233322 2235778899999999999999999999999986 789999987 56666665 689997
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003166 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
+++|||+|++++|||.+++.++. +. +..++ ....+.||+++|++|+|||++.+++.|+ ++|+||
T Consensus 265 ~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~---~~-~~~~~-~~~~~~~~~~~p~~~~VfK~~~d~~~G~-~~~~RV 338 (704)
T 2rdo_7 265 TCGSAFKNKGVQAMLDAVIDYLPSPVDVPAING---IL-DDGKD-TPAERHASDDEPFSALAFKIATDPFVGN-LTFFRV 338 (704)
T ss_pred EEeecccCccHHHHHHHHHHHCCChhhcccccc---cC-Ccccc-cccccccCCCCceEEEEEEEEEcCCCce-EEEEEE
Confidence 69999999999999988765443 11 11111 1245678899999999999999999888 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003166 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 477 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~ 477 (843)
|||+|++||.|++.. .+++ ++|++|+.++|++++++++|.|||||++.|++++ ++| |||+... +.+
T Consensus 339 ~sG~l~~g~~v~~~~----~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~--~~GdTl~~~~~--~~~ 405 (704)
T 2rdo_7 339 YSGVVNSGDTVLNSV----KAAR-----ERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDV--TTGDTLCDPDA--PII 405 (704)
T ss_pred EeeeecCCCEEEeCC----CCcE-----EEeceEEEEeCCCceEcceeCCCCEEEEeCcccC--ccCCEEeCCCc--ccc
Confidence 999999999999542 3332 7999999999999999999999999999999987 788 9998877 778
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEE
Q 003166 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 556 (843)
Q Consensus 478 ~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~ 556 (843)
++++.++ .|+++++|+|.++.|++||.+||++|.+|||+|+++.+ +|||++|+||||||||||++||+++| |+++.
T Consensus 406 l~~~~~~-~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f--~v~v~ 482 (704)
T 2rdo_7 406 LERMEFP-EPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREF--NVEAN 482 (704)
T ss_pred cCCCCCC-CceEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8999987 99999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EcCCeEeeEecccccc-ceeeeee----cCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCccccc
Q 003166 557 KSDPVVSFRETVLEKS-CRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLA 631 (843)
Q Consensus 557 ~~~p~V~yrETi~~~~-~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 631 (843)
+++|+|+|||||++++ +....++ +.+++.+++++++|+++ |
T Consensus 483 ~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~--------~-------------------------- 528 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEP--------G-------------------------- 528 (704)
T ss_pred EeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCC--------C--------------------------
Confidence 9999999999999876 4433322 23344556666666531 0
Q ss_pred ceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHH
Q 003166 632 KKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTA 710 (843)
Q Consensus 632 ~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~ 710 (843)
| +..+|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+
T Consensus 529 -------~-~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~ 597 (704)
T 2rdo_7 529 -------S-NPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSEL---AFKLAA 597 (704)
T ss_pred -------C-CCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHH---HHHHHH
Confidence 1 11258999999999999999999999999999999999999999999999999997 56554 578999
Q ss_pred HHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCC
Q 003166 711 RRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATS 790 (843)
Q Consensus 711 ~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 790 (843)
++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+| +++|+|++|++|||||+++|||+|+
T Consensus 598 ~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~ 675 (704)
T 2rdo_7 598 SIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVT--GVKIHAEVPLSEMFGYATQLRSLTK 675 (704)
T ss_pred HHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCC--eEEEEEEecHHHHhhHHHHhHhhcC
Confidence 99999999999999999999999999999999999999999999999998764 7999999999999999999999999
Q ss_pred CceeeeeEecceeecCCCCCCCchhHHHHHHH
Q 003166 791 GQAFPQCVFDHWDMMSSDPLEPGSQASQLVLD 822 (843)
Q Consensus 791 G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~ 822 (843)
|+|+|+|+|+||+++|+++ +++++++
T Consensus 676 G~~~~~~~f~~y~~~~~~~------~~~i~~~ 701 (704)
T 2rdo_7 676 GRASYTMEFLKYDEAPSNV------AQAVIEA 701 (704)
T ss_pred CceEEEEEeCcceECCccH------HHHHHHH
Confidence 9999999999999999996 8888876
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-112 Score=1016.95 Aligned_cols=662 Identities=26% Similarity=0.386 Sum_probs=535.4
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
.+++|||+|+||+|+|||||+++|++.++.+.+. ..| .+++|+.+.|+++|+|+.+....+.|.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~-~~~~D~~~~e~~~giTi~~~~~~~~~~------------ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG-ASQMDWMEQEQDRGITITSAATTAAWE------------ 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------CCSEEEEEET------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC-ceecccchhhhhcCceEeeeeEEEEEC------------
Confidence 4679999999999999999999999988876541 112 468999999999999999999888885
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHH
Q 003166 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~ 172 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. ++++.
T Consensus 74 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~----~~~~~ 145 (693)
T 2xex_A 74 ----GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL----GANFE 145 (693)
T ss_dssp ----TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCCHH
T ss_pred ----CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcc----ccchH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 77633
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeecc--CccceEEeehhHHHHHhhhcCCCHHHHHHhhcccccc
Q 003166 173 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSA--GLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s--~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
+++++++..+.. .+....+|+++ ++.|+.- ... +..| +|
T Consensus 146 -------~~~~~l~~~l~~-----------~~~~~~ipisa~~~~~~l~d----------------~l~--~~~~---~~ 186 (693)
T 2xex_A 146 -------YSVSTLHDRLQA-----------NAAPIQLPIGAEDEFEAIID----------------LVE--MKCF---KY 186 (693)
T ss_dssp -------HHHHHHHHHHCC-----------CEEESEEEECCGGGCCEEEE----------------TTT--TEEE---EC
T ss_pred -------HHHHHHHHHhCC-----------CceeEEeecccCCCcceeee----------------eec--ceeE---Ee
Confidence 344444444421 11112344433 3333311 111 1222 33
Q ss_pred C-CCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003166 251 D-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
+ ..+..+...+ ....|.+.....+.++++.+++.|+++|++||++ .+++.+++. +++++++. .+++|+
T Consensus 187 ~~~~~~~~~~~~-----~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~--~~~~~~~~~---~~l~~~~~~~~~~Pv 256 (693)
T 2xex_A 187 TNDLGTEIEEIE-----IPEDHLDRAEEARASLIEAVAETSDELMEKYLGD--EEISVSELK---EAIRQATTNVEFYPV 256 (693)
T ss_dssp CSSSSCSCEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred ccCCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcC--CCCCHHHHH---HHHHHHHHhCCeeeE
Confidence 3 2111122222 1235777788889999999999999999999996 788888886 45666655 578897
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003166 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|||.+++.++.. . +.++. ....+.||+++||+|+|||++.+++.|+ ++|+||
T Consensus 257 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~---~-~~~~~-~~~~~~~~~~~p~~a~VfK~~~d~~~g~-~~~~RV 330 (693)
T 2xex_A 257 LCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGH---R-ASNPE-EEVIAKADDSAEFAALAFKVMTDPYVGK-LTFFRV 330 (693)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEE---E-TTEEE-EEEEECSCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHHCCCchhccccccc---C-CCccc-cceeecCCCCCceEEEEEEeeecCCCce-EEEEEE
Confidence 689999999999999887654331 1 11111 2346678999999999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccc
Q 003166 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHP 477 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~ 477 (843)
|||+|++||.|++. +.++ .++|++|+.++|++++++++|.|||||++.|++++ ++| |||+... +.+
T Consensus 331 ~sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdTl~~~~~--~~~ 397 (693)
T 2xex_A 331 YSGTMTSGSYVKNS----TKGK-----RERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDT--GTGDTLCGEKN--DII 397 (693)
T ss_dssp EESEEETTEEEEET----TTTE-----EEEECCEEEECSSCEEECSEEETTCEEEEESCSSC--CTTCEEEETTC--CEE
T ss_pred EeeeEecCCEEEec----CCCc-----eEEeceEEEEeCCCceEccccCcCCEEEEeCcccC--ccCCEEecCCC--ccc
Confidence 99999999999954 3333 37999999999999999999999999999999987 678 9999877 778
Q ss_pred ccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEE
Q 003166 478 IRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEII 556 (843)
Q Consensus 478 ~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~ 556 (843)
++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|+++.+ +|||++|+|||||||||+++||+++| |+++.
T Consensus 398 ~~~~~~~-~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~--~v~v~ 474 (693)
T 2xex_A 398 LESMEFP-EPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEF--NVECN 474 (693)
T ss_dssp CCCCSSC-SCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHS--CCCEE
T ss_pred cCCcCCC-CceEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHh--CceEE
Confidence 8999987 89999999999999999999999999999999999997 89999999999999999999999999 99999
Q ss_pred EcCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEE
Q 003166 557 KSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636 (843)
Q Consensus 557 ~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 636 (843)
+++|+|+|||||+++++.. ++|++ |+|+. +||+ .+|.
T Consensus 475 ~~~p~V~yrEti~~~~~~~------~~~~k----------------q~gg~--------------~~~~-------~v~~ 511 (693)
T 2xex_A 475 VGAPMVSYRETFKSSAQVQ------GKFSR----------------QSGGR--------------GQYG-------DVHI 511 (693)
T ss_dssp ECCCEECCEEEESSCEEEE------EEEEE----------------CTTSS--------------CEEE-------EEEE
T ss_pred EeCCeEEEEEEecccccee------Eeecc----------------ccCCC--------------CceE-------EEEE
Confidence 9999999999999877433 33444 44443 3444 2443
Q ss_pred -eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHH
Q 003166 637 -FGPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRV 713 (843)
Q Consensus 637 -~~p~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a 713 (843)
++|...| +|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++|
T Consensus 512 ~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~a 588 (693)
T 2xex_A 512 EFTPNETGAGFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEM---AFKIAASLA 588 (693)
T ss_dssp EEEECCTTCCCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHH---HHHHHHHHH
T ss_pred EEEECCCCCCCEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHH---HHHHHHHHH
Confidence 4553222 58999999999999999999999999999999999999999999999999997 77665 478999999
Q ss_pred HHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCce
Q 003166 714 IYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQA 793 (843)
Q Consensus 714 ~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~ 793 (843)
|++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+| +++|+|++|++|||||+++|||+|+|+|
T Consensus 589 ~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~ 666 (693)
T 2xex_A 589 LKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGN--AQVVNAYVPLSEMFGYATSLRSNTQGRG 666 (693)
T ss_dssp HHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT--EEEEEEEEEGGGCTTHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCC--eEEEEEEeCHHHHHhHHHHhHHhcCCce
Confidence 99999999999999999999999999999999999999999999998764 7999999999999999999999999999
Q ss_pred eeeeEecceeecCCCCCCCchhHHHHHHHH
Q 003166 794 FPQCVFDHWDMMSSDPLEPGSQASQLVLDI 823 (843)
Q Consensus 794 ~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~ 823 (843)
+|+|+|+||+++|+++ +++++++.
T Consensus 667 ~~~~~f~~y~~~~~~~------~~~i~~~~ 690 (693)
T 2xex_A 667 TYTMYFDHYAEVPKSI------AEDIIKKN 690 (693)
T ss_dssp EEEEEEEEEEECCHHH------HHHHHHHH
T ss_pred EEEEEeCcceECChhH------HHHHHHHh
Confidence 9999999999999986 88988763
No 5
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=2.1e-112 Score=1018.83 Aligned_cols=660 Identities=27% Similarity=0.408 Sum_probs=492.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
..+++|||+|+||+|||||||+++|++.++.+.+.. .+..+++|+.+.|+++|+|+.+...++.|.
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~------------ 75 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK------------ 75 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET------------
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC------------
Confidence 346799999999999999999999999888775420 112468999999999999999999888885
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHH
Q 003166 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~ 172 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|++.++..+|+++...++|+++|+||+|+. +++
T Consensus 76 ----~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~----~~~-- 145 (691)
T 1dar_A 76 ----DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT----GAD-- 145 (691)
T ss_dssp ----TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTST----TCC--
T ss_pred ----CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcc----cCC--
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 776
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeee--ccCccceEEeehhHHHHHhhhcCCCHHHHHHhhcccccc
Q 003166 173 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAF--SAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~--~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
+.+++++++..+.. .+...++|+ ++++.||...+. ...| +|
T Consensus 146 -----~~~~~~~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~~d~~~------------------~~~~---~~ 188 (691)
T 1dar_A 146 -----LWLVIRTMQERLGA-----------RPVVMQLPIGREDTFSGIIDVLR------------------MKAY---TY 188 (691)
T ss_dssp -----HHHHHHHHHHTTCC-----------CEEECEEEESCGGGCCEEEETTT------------------TEEE---EE
T ss_pred -----HHHHHHHHHHHhCC-----------CccceeccccCCCcccchhhhhc------------------ceee---Ee
Confidence 34444555554431 111223344 455677755433 1222 23
Q ss_pred C-CCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003166 251 D-PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
+ ..+..+...+ ....|.++..+.+.++++.+++.|+++|++||++ .+++.+++. +++++.+. .+++|+
T Consensus 189 ~~~~g~~~~~~~-----~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~--~~~~~~~~~---~~~~~~~~~~~~~Pv 258 (691)
T 1dar_A 189 GNDLGTDIREIP-----IPEEYLDQAREYHEKLVEVAADFDENIMLKYLEG--EEPTEEELV---AAIRKGTIDLKITPV 258 (691)
T ss_dssp CSTTSCCEEEEC-----CCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred ccCCCceeEEec-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCcEeEE
Confidence 2 1121222222 2345778888999999999999999999999996 788998886 45556555 578897
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003166 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|+|.+++.++... + +++ ...+.|++++|++|+|||+..+++.|+ ++|+||
T Consensus 259 ~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~----~-~~~--~~~~~~~~~~p~~~~Vfk~~~d~~~G~-~~~~RV 330 (691)
T 1dar_A 259 FLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTT----P-EGE--VVEIHPDPNGPLAALAFKIMADPYVGR-LTFIRV 330 (691)
T ss_dssp EECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEEC----S-SSC--EEEECCCTTSCCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCChhhcccccccC----C-Ccc--ccccccCCCCCcEEEEEEEEEcCCCCc-EEEEEE
Confidence 6899999999999998876544321 1 111 245678999999999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCc-c
Q 003166 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA-H 476 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~-~ 476 (843)
|||+|++||.|++. +.+. .++|++|+.++|++++++++|.|||||++.||+++ .+| |||+... + .
T Consensus 331 ~sG~l~~g~~v~~~----~~~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~ 397 (691)
T 1dar_A 331 YSGTLTSGSYVYNT----TKGR-----KERVARLLRMHANHREEVEELKAGDLGAVVGLKET--ITGDTLVGEDA--PRV 397 (691)
T ss_dssp EESEEESSCEEEET----TTTE-----EEECCEEEEECSSCEEEESEEETTCEEEEECCSSC--CTTCEEEETTC--CCC
T ss_pred eeeeEecCCEEEec----CCCc-----EEEEceEEEEeCCCceEcceecCCCEEEEeCcccC--ccCCEEecCCC--ccc
Confidence 99999999999954 2333 37999999999999999999999999999999987 678 9999876 6 7
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeE
Q 003166 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
Q Consensus 477 ~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v 555 (843)
+++++.++ .|+++++|+|.++.|.+||.+||++|.+|||+|+++.+ +|||++|+||||||||||++||+++| |+++
T Consensus 398 ~l~~~~~~-~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~--~v~v 474 (691)
T 1dar_A 398 ILESIEVP-EPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREF--KVDA 474 (691)
T ss_dssp BCC---------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCE--EEBT
T ss_pred ccCCCCCC-CceEEEEEEECCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHhh--CceE
Confidence 88999987 89999999999999999999999999999999999997 89999999999999999999999999 9999
Q ss_pred EEcCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEE
Q 003166 556 IKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW 635 (843)
Q Consensus 556 ~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 635 (843)
.+++|+|+|||||+++++.. ++|++ |+|+. +||+ .+|
T Consensus 475 ~~~~p~V~yrEti~~~~~~~------~~~~k----------------q~gg~--------------~~~~-------~v~ 511 (691)
T 1dar_A 475 NVGKPQVAYRETITKPVDVE------GKFIR----------------QTGGR--------------GQYG-------HVK 511 (691)
T ss_dssp TTBCCCBCCEEECSSCEEEE------EEEEE----------------CCSSS--------------CEEE-------EEE
T ss_pred EEeCCeEEEEEeeccceeee------eeecc----------------ccCCC--------------CceE-------EEE
Confidence 99999999999999877443 33433 44443 3444 244
Q ss_pred E-eccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHH
Q 003166 636 C-FGPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (843)
Q Consensus 636 ~-~~p~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~ 712 (843)
. ++|...| +|.|.|.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. ||++. +|+.|+++
T Consensus 512 ~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~---~f~~a~~~ 588 (691)
T 1dar_A 512 IKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEM---AFKIAGSM 588 (691)
T ss_dssp EEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHH---HHHHHHHH
T ss_pred EEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchH---HHHHHHHH
Confidence 3 4443222 58899999999999999999999999999999999999999999999999997 77665 47899999
Q ss_pred HHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCc
Q 003166 713 VIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792 (843)
Q Consensus 713 a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (843)
||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+| +++|+|++|++|||||+++|||+|+|+
T Consensus 589 a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~ 666 (691)
T 1dar_A 589 AIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGN--AQVIRAFVPLAEMFGYATDLRSKTQGR 666 (691)
T ss_dssp HHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETT--EEEEEEEEETTTSSSHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCC--eEEEEEEecHHHHhhHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999998764 799999999999999999999999999
Q ss_pred eeeeeEecceeecCCCCCCCchhHHHHHH
Q 003166 793 AFPQCVFDHWDMMSSDPLEPGSQASQLVL 821 (843)
Q Consensus 793 ~~~~~~f~~y~~v~~d~~~~~~~~~~~~~ 821 (843)
|+|+|+|+||+++|+++ ++++++
T Consensus 667 ~~~~~~f~~y~~~~~~~------~~~i~~ 689 (691)
T 1dar_A 667 GSFVMFFDHYQEVPKQV------QEKLIK 689 (691)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHC
T ss_pred eEEEEEeCcceECChhH------HHHHHh
Confidence 99999999999999986 777764
No 6
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=8e-115 Score=1031.97 Aligned_cols=602 Identities=21% Similarity=0.269 Sum_probs=504.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+||||||+||+|||||||+++||+++|.+.+.- .+..+++|++++|++|||||+++.+++.|+
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------------- 65 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------------- 65 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS---------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC---------------
Confidence 589999999999999999999999999998731 112468999999999999999999999996
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHH
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~ 175 (843)
+++|||||||||.||..|+.++++.+|+||+||||++|+++||+.+|++|.++++|+|+||||||+. ++++....
T Consensus 66 -~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~----~a~~~~~~ 140 (638)
T 3j25_A 66 -NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQN----GIDLSTVY 140 (638)
T ss_dssp -SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSS----SCCSHHHH
T ss_pred -CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccc----cCCHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 88855443
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCC
Q 003166 176 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+++...+.. ++.+.... .+|.+... .
T Consensus 141 -------~~i~~~l~~----------------~~~~~~~~---------------------------~~~~~~~~----~ 166 (638)
T 3j25_A 141 -------QDIKEKLSA----------------EIVIKQKV---------------------------ELYPNVCV----T 166 (638)
T ss_dssp -------HHHHHTTCC----------------CCCCCCCC---------------------------CSCGGGCC----C
T ss_pred -------HHHHHHhCC----------------Ccccccee---------------------------Eeeccccc----c
Confidence 344433321 01110000 00100000 0
Q ss_pred ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc------
Q 003166 256 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA------ 328 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 328 (843)
.+ .+ .+..+.+++.|++++++|+++ ..++..++.. .+...+. ..++|+
T Consensus 167 ~~----------~~----------~~~~e~~~e~~d~l~e~~~~~--~~~~~~~~~~---~~~~~~~~~~~~Pv~~gSa~ 221 (638)
T 3j25_A 167 NF----------TE----------SEQWDTVIEGNDDLLEKYMSG--KSLEALELEQ---EESIRFQNCSLFPLYHGSAK 221 (638)
T ss_dssp CC----------CC----------HHHHHHHHHHHCHHHHHHHHH--CCCCSHHHHH---HHHHHHHHTSCCCCCCCCST
T ss_pred cc----------ch----------hhhhhhhhcccHHHHhhhccC--CccchHHHHH---HHhhhhcccccccccccccc
Confidence 00 00 133577777889999999998 6677776652 2333333 577886
Q ss_pred ----hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEec
Q 003166 329 ----SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVA 404 (843)
Q Consensus 329 ----~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~ 404 (843)
+++|||+|++++|+|.+. +++|++|+|||+..+++.|+ ++|+|||||+|+
T Consensus 222 ~~~Gv~~LLd~i~~~~p~p~~~-------------------------~~~~~~~~Vfk~~~d~~~G~-la~~RV~sG~l~ 275 (638)
T 3j25_A 222 SNIGIDNLIEVITNKFYSSTHR-------------------------GPSELCGNVFKIEYTKKRQR-LAYIRLYSGVLH 275 (638)
T ss_dssp TCCSHHHHHHHHHHSCCCSGGG-------------------------SCCCCCBEEBCCCCCSTTCC-CCBCCBSSBCCC
T ss_pred cCCCchhHhhhhhccccCcccc-------------------------hhhhhcceeeeeeeeccCce-EEEEEEEcCccc
Confidence 799999999999999532 35789999999999999987 999999999999
Q ss_pred CCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccccc
Q 003166 405 TGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKF 483 (843)
Q Consensus 405 ~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~ 483 (843)
+||.|++.+ . ++ +++.+++.++|.+++++++|.|||||++.| ... ++| |+++... ...++++.+
T Consensus 276 ~g~~v~~~~----~-~~-----~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g-~~~--~~~~tl~d~~~--~~~~~~i~~ 340 (638)
T 3j25_A 276 LRDSVRVSE----K-EK-----IKVTEMYTSINGELCKIDRAYSGEIVILQN-EFL--KLNSVLGDTKL--LPQRKKIEN 340 (638)
T ss_dssp SCCCSSSCC----C-CC-----SSBCCCCSSCCCCBSCCCTTBCCCCSCCCS-SSC--SSEECSSSSSS--GGGCSCCCC
T ss_pred CCCcccccc----C-cc-----eeEEeeecccccccccccccccceEEEEec-ccc--ccCceecCCCC--cccccCccC
Confidence 999998532 1 12 699999999999999999999999999988 232 566 7877665 566677777
Q ss_pred CCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeE
Q 003166 484 SVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVV 562 (843)
Q Consensus 484 ~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V 562 (843)
+ .|+++++|+|.++.|++||.++|++|.+|||+|+++.+ +|||++|+|||||||||+++||+++| |+++.+++|+|
T Consensus 341 p-~Pv~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~ef--gvev~~~~P~V 417 (638)
T 3j25_A 341 P-HPLLQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKY--HVEIELKEPTV 417 (638)
T ss_dssp C-CCCCCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTT--CCCCEEECCCC
T ss_pred C-CccceeeeccCChHHHHHHHHHHHHHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHh--CCcEEEeCCce
Confidence 5 99999999999999999999999999999999999987 89999999999999999999999999 99999999999
Q ss_pred eeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEE-eccCC
Q 003166 563 SFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC-FGPET 641 (843)
Q Consensus 563 ~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~p~~ 641 (843)
+|||||.++++..+.. ++|+. ++|+- |+. ++|..
T Consensus 418 ~yrEti~~~~~~~~~~------------------------~~~~~--------------~~~~~-------v~~~~eP~~ 452 (638)
T 3j25_A 418 IYMERPLKNAEYTIHI------------------------EVPPN--------------PFWAS-------IGLSVSPLP 452 (638)
T ss_dssp CCCBCCCSCCEECCCC------------------------CSSSC--------------CCCCC-------CCEECCCCC
T ss_pred eEEEEecccceEEEEE------------------------ecCCC--------------CceEE-------EEEEEeccc
Confidence 9999999876432221 22221 23331 333 55543
Q ss_pred CC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHh
Q 003166 642 IG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQL 719 (843)
Q Consensus 642 ~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a~~ 719 (843)
.| ++.|.+.+.|+.++++++++|++||++|+++| |||+||+|++|+|.|+++|. ||+ ..+|+.|+++||++|++
T Consensus 453 ~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~l~dg~~h~~~s~---~~~f~~a~~~a~~~a~~ 528 (638)
T 3j25_A 453 LGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKICFKYGLYYSPVST---PADFRMLAPIVLEQVLK 528 (638)
T ss_dssp SSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCCCCCCCCSSCSCC---SHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEeeeecccchhhhhhHHhhhHHHHHhcc-ccCCcccceEEEEEECcccCCCCC---HHHHHHHHHHHHHHHHH
Confidence 33 57788888999999999999999999999999 99999999999999999996 554 44688999999999999
Q ss_pred hcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEe
Q 003166 720 TAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVF 799 (843)
Q Consensus 720 ~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 799 (843)
+|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+|
T Consensus 529 ~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f 606 (638)
T 3j25_A 529 KAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKN--NEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTEL 606 (638)
T ss_dssp HHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCT--TEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCC
T ss_pred HCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecC--CeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999998765 57899999999999999999999999999999999
Q ss_pred cceeecCCCCCCCc
Q 003166 800 DHWDMMSSDPLEPG 813 (843)
Q Consensus 800 ~~y~~v~~d~~~~~ 813 (843)
+||++||+||++.+
T Consensus 607 ~~y~~vpgdp~~~~ 620 (638)
T 3j25_A 607 KGYHVTTGEPVCQP 620 (638)
T ss_dssp CCCCCCCSCCSCCC
T ss_pred CceEECCCCccccc
Confidence 99999999999754
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=3.2e-104 Score=945.19 Aligned_cols=634 Identities=24% Similarity=0.336 Sum_probs=540.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCccccccccceeeeeeEEEEEeechhhhhcccc
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
..+.+||+|+||.|||||||+++|++..+.+.. .|+ .+++|+.+.|+++|+|+......+.|.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~--~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~----------- 72 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKER--RGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR----------- 72 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSS--CCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-----------
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCc--cceecCCcccccCCHHHHhcCCeEEecceEEeeC-----------
Confidence 367899999999999999999999988776543 222 367899999999999999988888875
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCH
Q 003166 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~ 171 (843)
++.+||||||||.+|..++.++++.+|++++|+|+++|+..|++.+|+++...++|+++|+||+|+. . ..
T Consensus 73 -----~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~----~~ 142 (665)
T 2dy1_A 73 -----GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-G----DY 142 (665)
T ss_dssp -----TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-C----CH
T ss_pred -----CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-h----hH
Confidence 7899999999999999999999999999999999999999999999999999999999999999986 1 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeec--cCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003166 172 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
++ ++++++..+.. ..| ..+|++ +++.||. |... ...| |
T Consensus 143 ~~-------~~~~l~~~l~~----------~~~--~~~Pi~~~~~~~g~~----------------d~~~--~~~~---~ 182 (665)
T 2dy1_A 143 YA-------LLEDLRSTLGP----------ILP--IDLPLYEGGKWVGLI----------------DVFH--GKAY---R 182 (665)
T ss_dssp HH-------HHHHHHHHHCS----------EEE--CEEEEEETTEEEEEE----------------ETTT--TEEE---E
T ss_pred HH-------HHHHHHHHhCC----------cce--EEeeecCCCcccchh----------------hhhh--hhee---e
Confidence 23 33333333310 011 134443 3344442 1212 2334 3
Q ss_pred cCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003166 250 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
|++. .+...+ ....|.++..++++++++.+++.|++++++|+++ .+++.+++. .++++.++ .+|+|+
T Consensus 183 ~~~g--~~~~~~-----~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~--~~l~~~~~~---~~~~~~~~~~~~~pv 250 (665)
T 2dy1_A 183 YENG--EEREAE-----VPPEERERVQRFRQEVLEAIVETDEGLLEKYLEG--EEVTGEALE---KAFHEAVRRGLLYPV 250 (665)
T ss_dssp EETT--EEEEEC-----CCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHT--CCCCHHHHH---HHHHHHHHTTSCEEE
T ss_pred cCCC--ceeEec-----CCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHhCCeeEE
Confidence 3331 243332 2346788889999999999999999999999996 789999887 45666665 478886
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003166 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
++.|||+|++++|+|.++ ++++|++++|||+..+++.|+ ++|+||
T Consensus 251 ~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------------~~~~p~~~~V~k~~~d~~~G~-~~~~rV 305 (665)
T 2dy1_A 251 ALASGEREIGVLPLLELILEALPSPTER------------------------FGDGPPLAKVFKVQVDPFMGQ-VAYLRL 305 (665)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCCHHHH------------------------HCSCSCEEEEEEEEEETTTEE-EEEEEE
T ss_pred EEeecccCcCHHHHHHHHHHhCCCcccc------------------------CCCCCeEEEEEEEEEcCCCCe-EEEEEE
Confidence 689999999999999642 145899999999999999887 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCc--
Q 003166 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDA-- 475 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~-- 475 (843)
|||+|++||.|++.+ . .++|++|+.++|++.+++++|.|||||++.|++++ ++| ||++... +
T Consensus 306 ~sG~l~~g~~v~~~~------~-----~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~--~~Gdtl~~~~~--~~~ 370 (665)
T 2dy1_A 306 YRGRLKPGDSLQSEA------G-----QVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGL--HRGMVLWQGEK--PES 370 (665)
T ss_dssp EESEECTTEEEBCTT------S-----CEEESSEEEEETTEEEEESCEETTCEEEESSCTTC--CTTCEEESSSC--CCG
T ss_pred cccEEecCCEEEcCC------C-----eEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccC--ccCCEEecCCC--ccc
Confidence 999999999999532 2 27999999999999999999999999999999986 678 9998776 5
Q ss_pred ccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCee
Q 003166 476 HPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAE 554 (843)
Q Consensus 476 ~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~ 554 (843)
.+++++.++ .|+++++|+|.++.|.+||.++|++|.+|||+|++..+ +|||++|+|||||||||+++||+ +| |++
T Consensus 371 ~~l~~~~~~-~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~--~v~ 446 (665)
T 2dy1_A 371 EEVPFARLP-DPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DY--GVE 446 (665)
T ss_dssp GGSCCCCCC-CCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HT--TCC
T ss_pred cccCCCCCC-CceEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHH-HC--Cce
Confidence 678899887 89999999999999999999999999999999999997 89999999999999999999999 99 999
Q ss_pred EEEcCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceE
Q 003166 555 IIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKI 634 (843)
Q Consensus 555 v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
+.+++|+|+|||||+++++ ..++|++ |+|+. +||+ .+
T Consensus 447 v~~~~p~V~yrEti~~~~~------~~~~~~k----------------~~gg~--------------g~~~-------~v 483 (665)
T 2dy1_A 447 VEFSVPKVPYRETIKKVAE------GQGKYKK----------------QTGGH--------------GQYG-------DV 483 (665)
T ss_dssp EEEECCCCCCEEEESSCEE------EEEEEEE----------------EETTE--------------EEEE-------EE
T ss_pred EEEeCCEEEEEEeecccee------eeeeccc----------------ccCCC--------------cceE-------EE
Confidence 9999999999999998764 3445655 55653 5666 36
Q ss_pred EE-eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHH
Q 003166 635 WC-FGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (843)
Q Consensus 635 ~~-~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~ 712 (843)
|. ++|.. +|.|.+.+.|+.++++++++|++||+||+++|||||+||+||+|+|+|+++|. |+++. +|+.|+++
T Consensus 484 ~~~~eP~~--g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~---~f~~a~~~ 558 (665)
T 2dy1_A 484 WLRLEPAS--EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDL---AFQIAASL 558 (665)
T ss_dssp EEEEEECS--SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHH---HHHHHHHH
T ss_pred EEEEEECC--CCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccCCCCCHH---HHHHHHHH
Confidence 65 66654 48899999999999999999999999999999999999999999999999997 77765 46789999
Q ss_pred HHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCc
Q 003166 713 VIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792 (843)
Q Consensus 713 a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (843)
||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..+ ++++|+|++|++|||||+++|||+|+|+
T Consensus 559 a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P~~e~~~~~~~Lrs~T~G~ 636 (665)
T 2dy1_A 559 AFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVPLAEVLEYYKALPGLTGGA 636 (665)
T ss_dssp HHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHHTTC
T ss_pred HHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEECHHHHhhHHHHhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999876 5899999999999999999999999999
Q ss_pred eeeeeEecceeecCCCCCCCchhHHHHHHHHH
Q 003166 793 AFPQCVFDHWDMMSSDPLEPGSQASQLVLDIR 824 (843)
Q Consensus 793 ~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r 824 (843)
|+|+|+|+||+++|+++ +++++++.+
T Consensus 637 ~~~~~~f~~y~~~~~~~------~~~~~~~~~ 662 (665)
T 2dy1_A 637 GAYTLEFSHYAEVPPHL------AQRIVQERA 662 (665)
T ss_dssp CEEEEEEEEEEECCHHH------HHHHHHHHH
T ss_pred EEEEEEeCceeECCccH------HHHHHHHHh
Confidence 99999999999999986 889988864
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=3.7e-79 Score=711.71 Aligned_cols=449 Identities=22% Similarity=0.287 Sum_probs=320.4
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc------cCCceEeecCccccccccceeeeeeEEEEEeechhhhhc
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
...++|||||+||+|||||||+++||+++|++.+. ..+..+++|++++|++|||||.++.+++.|+
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~-------- 98 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR-------- 98 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET--------
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC--------
Confidence 45689999999999999999999999999998762 1112468999999999999999999999996
Q ss_pred cccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccccccc
Q 003166 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~ 168 (843)
+++|||||||||+||..|+.++|+++|+||+||||++|+++||+.+|++|.++++|+|+|||||||. +
T Consensus 99 --------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~----~ 166 (548)
T 3vqt_A 99 --------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDRE----A 166 (548)
T ss_dssp --------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSC----C
T ss_pred --------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccch----h
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhcc
Q 003166 169 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWG 246 (843)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~ 246 (843)
+++.++.+.+++ .+.. .+...++|+|.+ +.|+...+.. ..++|.
T Consensus 167 ad~~~~~~~i~~-------~l~~-----------~~~p~~~Pig~~~~f~g~vdl~~~----------------~~~~~~ 212 (548)
T 3vqt_A 167 LHPLDVMADIEQ-------HLQI-----------ECAPMTWPIGMGSSFKGTYDLLHK----------------QLHLFS 212 (548)
T ss_dssp CCHHHHHHHHHH-------HHTS-----------EEEESEEEESCGGGCCEEEETTTT----------------EEEECC
T ss_pred cchhHhhhhhhh-------hcCC-----------ceEeEEeeeecCCcccceEeeeee----------------eeeecc
Confidence 996655444443 3321 223335566544 5555443332 223332
Q ss_pred ccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhc
Q 003166 247 ENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWL 326 (843)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~ 326 (843)
... .+.................+.. +...+...+.++.+ ...+.+...+. . +..+++
T Consensus 213 ~~~----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~-~~~~~~~~~e~-------~---~~g~~~ 269 (548)
T 3vqt_A 213 ATH----GGRIQSGIVIHGADDPQLDEYL--------GDQAEQLRMDLALL-EEAGTPFDEER-------Y---LKGELT 269 (548)
T ss_dssp -----------CCCEECCSTTCTHHHHHH--------GGGHHHHHHHHHHH-HHHCCCCCHHH-------H---HTTSEE
T ss_pred ccc----CCcccccccccccchHHHHHHH--------HHHHHHhhhHHHHH-hhccCchhHHH-------H---HhCCcc
Confidence 110 0000000000000001111100 00000000111111 11112222111 1 114677
Q ss_pred cc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeec---CCCCcee
Q 003166 327 PA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA---SDKGRFF 393 (843)
Q Consensus 327 P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~---~~~g~~l 393 (843)
|+ +++|||+|++|+|||.+.+... . ...+.++||+|+|||+..+ ++.|+ +
T Consensus 270 PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~---------------~-~~~~~~~p~~a~vfKi~~~~~~~~~Gr-l 332 (548)
T 3vqt_A 270 PVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT---------------R-VVEPGEEAFTGVVFKIQANMDKAHRDR-M 332 (548)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS---------------S-EECTTCSSCEEEEEEEECC-------C-E
T ss_pred eeeecccccCcCHHHHHHHHHHhCCCCCCccccc---------------c-ccCCCCcCceEEEEEEEccCCcCCCCe-E
Confidence 76 7999999999999996543210 0 1123467999999999876 67787 9
Q ss_pred EEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCC
Q 003166 394 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 472 (843)
Q Consensus 394 ~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~ 472 (843)
+|+|||||+|++|+.|++.+ .+++ +|+++++.++|++++++++|.|||||+|.|++++ .+| |||+.+.
T Consensus 333 a~~RV~sG~l~~g~~v~~~~----~~~~-----~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GDTl~~~~~ 401 (548)
T 3vqt_A 333 AFLRICSGTFTRGMRLKHHR----TGKD-----VTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI--KIGDTFTESKE 401 (548)
T ss_dssp EEEEEEESCEETTCEEEETT----TTEE-----EECTTCEECCCSSCCSSCEECTTCEEEEECSSCC--CTTCEEESSSS
T ss_pred EEEEEecceecCCCEEEeec----cccc-----cccchhhhhccccccccCEEecCCEEEecCCccC--ccCCEecCCCC
Confidence 99999999999999999643 3333 8999999999999999999999999999999997 788 9999877
Q ss_pred CCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCC
Q 003166 473 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGG 552 (843)
Q Consensus 473 ~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~ 552 (843)
+.++++++++ .|+++++|+|+++.|.++|.++|++|.+|||+..++.++|||++|+|||||||||+++||+++| |
T Consensus 402 --~~~~~~i~~~-~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey--~ 476 (548)
T 3vqt_A 402 --VLKFVGIPNF-APEHFRRVRLKNPLKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY--G 476 (548)
T ss_dssp --CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH--C
T ss_pred --ccccCCCCCC-CCcceeeeeeCCchhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh--C
Confidence 7788888886 9999999999999999999999999999999665554599999999999999999999999999 9
Q ss_pred eeEE-----EcCCeEeeEeccccccc
Q 003166 553 AEII-----KSDPVVSFRETVLEKSC 573 (843)
Q Consensus 553 v~v~-----~~~p~V~yrETi~~~~~ 573 (843)
|++. ++.|+|+|||||+..++
T Consensus 477 vev~~e~v~~~~P~V~YrEti~~~~~ 502 (548)
T 3vqt_A 477 VDAVYEGVSTHTARWVYCEDKKIFAD 502 (548)
T ss_dssp CCEEEEECSCCEEEEEECSCHHHHHH
T ss_pred CCEEEeeccccCceEEecCCccchhh
Confidence 9976 57899999999998763
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.6e-74 Score=673.75 Aligned_cols=489 Identities=26% Similarity=0.428 Sum_probs=378.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGITI~~~~~~~~~~~-----------~dg 70 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKR-EQLLDTLDVERERGITVKMQAVRMFYKA-----------KDG 70 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEEC-----------TTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccccc-ccccccchhhhcccceeeeeEEEEEEEc-----------CCC
Confidence 3579999999999999999999999999988764333 4789999999999999999999988861 123
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHH
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~ 175 (843)
+.+.+||||||||.||..++.++++.+|+||+|||+++|++.||..+|.++...++|+++|+||||+. ++++++..
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~----~a~~~~v~ 146 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLP----SADVDRVK 146 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHH
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcc----ccCHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 77754332
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCC
Q 003166 176 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+ ++...+. +.+ ..+.++|+..|
T Consensus 147 ~-------el~~~lg-----------~~~--~~vi~vSAktg-------------------------------------- 168 (600)
T 2ywe_A 147 K-------QIEEVLG-----------LDP--EEAILASAKEG-------------------------------------- 168 (600)
T ss_dssp H-------HHHHTSC-----------CCG--GGCEECBTTTT--------------------------------------
T ss_pred H-------HHHHhhC-----------CCc--ccEEEEEeecC--------------------------------------
Confidence 2 2222111 000 01223333111
Q ss_pred ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 003166 256 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 335 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 335 (843)
. .++.||++
T Consensus 169 ---------------------------------------------~--------------------------GI~~Lle~ 177 (600)
T 2ywe_A 169 ---------------------------------------------I--------------------------GIEEILEA 177 (600)
T ss_dssp ---------------------------------------------B--------------------------SHHHHHHH
T ss_pred ---------------------------------------------C--------------------------CchHHHHH
Confidence 0 02567888
Q ss_pred HHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCC
Q 003166 336 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 415 (843)
Q Consensus 336 i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 415 (843)
+++++|+|. .++++|+.++|||++.+++.|. ++++||++|+|++||.|+++..
T Consensus 178 I~~~lp~p~-------------------------~~~~~pl~~lV~~~~~d~~~G~-v~~~rV~sG~l~~Gd~I~~~~~- 230 (600)
T 2ywe_A 178 IVNRIPPPK-------------------------GDPQKPLKALIFDSYYDPYRGA-VAFVRIFDGEVKPGDKIMLMST- 230 (600)
T ss_dssp HHHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESEECTTCEEEETTT-
T ss_pred HHHhccccc-------------------------ccccCCcceeEEEEeecccceE-EEEEEEEeCEEecCCEEEeccc-
Confidence 999999983 1356899999999999998887 9999999999999999997642
Q ss_pred CCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceEE
Q 003166 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl---~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~ 490 (843)
+. .++|.+++.+.+ +.++++++.||||+++. |+ +++ ++| ||++...+...+++++.++ +|+++
T Consensus 231 ---~~-----~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~ 298 (600)
T 2ywe_A 231 ---GK-----EYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDI--RIGDTITHAKNPTKEPVPGFQPA-KPMVY 298 (600)
T ss_dssp ---TE-----EEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSS--CTTCEEEESSSCCSSCCSCCCCC-CCCEE
T ss_pred ---cc-----eEeeecccccCC-CceECCEEecCceeeeeccccchhhc--cCCCEEEeCCCccccccCCCCCC-CcEEE
Confidence 22 279999998887 58899999999999885 54 454 778 9998776111467888876 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEe-----chhhHHHHHHHHHHhhccCCeeEEEcCCeEeeE
Q 003166 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 491 ~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
++|+|.+..|.++|.++|++|.+|||+|+++ .+|+|.++.| ||||||||+++||+++| |+++.+++|+|+||
T Consensus 299 ~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~g~~~~~~G~lHlei~~erl~re~--~~~v~~~~P~V~yr 375 (600)
T 2ywe_A 299 AGIYPAEDTTYEELRDALEKYAINDAAIVYE-PESSPALGMGFRVGFLGLLHMEIVQERLEREY--GVKIITTAPNVIYR 375 (600)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHHS--CCCEEECCCEECEE
T ss_pred EEeeccccccHHHHHHHHHHHhhhCCEEEEE-ECCccccccceEEEeccHHHHHHHHHHHHhhc--CceEEEEeeeEEEE
Confidence 9999999999999999999999999999997 4677777777 99999999999999999 99999999999999
Q ss_pred eccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCc
Q 003166 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 645 (843)
|||++.. ++ +++ . |
T Consensus 376 eti~~~g----------~~----~~~----------------------------------------------~------~ 389 (600)
T 2ywe_A 376 VKKKFTD----------EV----IEV----------------------------------------------R------N 389 (600)
T ss_dssp EEETTCS----------SC----EEE----------------------------------------------S------S
T ss_pred EEecCCC----------cE----EEE----------------------------------------------e------C
Confidence 9997421 00 000 0 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCee
Q 003166 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~L 725 (843)
| +++|+.+ + +. +.|
T Consensus 390 ------------------------------p-~~~p~~~----------~----~~---------------------~~l 403 (600)
T 2ywe_A 390 ------------------------------P-MDFPDNA----------G----LI---------------------EYV 403 (600)
T ss_dssp ------------------------------G-GGSCSCG----------G----GE---------------------EEE
T ss_pred ------------------------------h-hhCCCCC----------c----cc---------------------ccc
Confidence 1 3566554 0 00 379
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceee
Q 003166 726 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
|||||+++|.+|++|+|+|+++|++|||++++++..++ ++..|+|++|++|+ +||.++|||+|+|+|+|+++|+||++
T Consensus 404 lEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~-~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~ 482 (600)
T 2ywe_A 404 EEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDP-NTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRP 482 (600)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCC-CEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceE
Confidence 99999999999999999999999999999999998643 58999999999999 89999999999999999999999999
Q ss_pred c---------CCCCCCC----------chhHHHHHHHHH
Q 003166 805 M---------SSDPLEP----------GSQASQLVLDIR 824 (843)
Q Consensus 805 v---------~~d~~~~----------~~~~~~~~~~~r 824 (843)
+ .++|.|. ....++++.+.+
T Consensus 483 ~~~~~~~~~~ng~~v~~~~~~~~~~~~~~~~~~~~~~~~ 521 (600)
T 2ywe_A 483 SDLIKLTVLINKKPVDALSFIVHADRAQKFARRVAEKLR 521 (600)
T ss_dssp CCEEEEEEEESSSBCGGGCEEEEGGGHHHHHHHHHHHHH
T ss_pred ccccccccccCCCEeccchhhhhhHHHHHHHHHHHHHHH
Confidence 9 8887763 235677777755
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=7.5e-73 Score=661.28 Aligned_cols=485 Identities=27% Similarity=0.412 Sum_probs=370.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++|||+|+||+|||||||+++|++.+|.+.....+ .+++|+.+.|++||+|+.+..+.+.|.. .+++
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~-~~~~D~~~~ErerGiTi~~~~~~~~~~~-----------~~g~ 69 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREME-AQVLDSMDLERERGITIKAQSVTLDYKA-----------SDGE 69 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEEC-----------TTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCccccccc-ccccccchhhhcccceeeeeEEEEEEec-----------CCCC
Confidence 469999999999999999999999999988764333 4789999999999999999999998861 1234
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
++.+||||||||.||..++.++++.+|+||+|+|+++|++.||..+|.++...++|+++|+||+|+. ++++++..+
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~----~a~~~~v~~ 145 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLP----AADPERVAE 145 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTST----TCCHHHHHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcc----cccHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 777554333
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003166 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+ .+.. .+ ..+..+|+..|
T Consensus 146 ei~~-------~lg~-----------~~--~~vi~vSAktg--------------------------------------- 166 (599)
T 3cb4_D 146 EIED-------IVGI-----------DA--TDAVRCSAKTG--------------------------------------- 166 (599)
T ss_dssp HHHH-------HTCC-----------CC--TTCEEECTTTC---------------------------------------
T ss_pred HHHH-------HhCC-----------Cc--ceEEEeecccC---------------------------------------
Confidence 2222 1110 00 01222233110
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003166 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
. .++.|++++
T Consensus 167 ----------------------------------------------~------------------------GI~~Ll~~I 176 (599)
T 3cb4_D 167 ----------------------------------------------V------------------------GVQDVLERL 176 (599)
T ss_dssp ----------------------------------------------T------------------------THHHHHHHH
T ss_pred ----------------------------------------------C------------------------CchhHHHHH
Confidence 0 025678889
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003166 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
++++|+|. .++++|+.++||+++.+++.|. ++++||++|+|++||.++++..
T Consensus 177 ~~~lp~p~-------------------------~~~~~p~~alI~d~~~d~~~G~-v~~~rV~sG~l~~Gd~v~~~~~-- 228 (599)
T 3cb4_D 177 VRDIPPPE-------------------------GDPEGPLQALIIDSWFDNYLGV-VSLIRIKNGTLRKGDKVKVMST-- 228 (599)
T ss_dssp HHHSCCCC-------------------------CCTTSCCEEEEEEEEEETTTEE-EEEEEEEESCEESSCEEEETTT--
T ss_pred hhcCCCcc-------------------------ccccCCceeeeeeccccccccE-EEEEEEEeCEEecCCEEEeccc--
Confidence 99999983 1357899999999999999887 9999999999999999997642
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe-c---cccccccce-eeecCCCCCcccccccccCCCceEEE
Q 003166 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-G---LDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-g---l~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (843)
+. .+++.+++.+.+. .++++++.||||+++. | ++++ ++| ||++...+...+++++..+ +|++++
T Consensus 229 --~~-----~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~--~~GDtl~~~~~~~~~~l~~~~~~-~P~v~~ 297 (599)
T 3cb4_D 229 --GQ-----TYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGA--PVGDTLTLARNPAEKALPGFKKV-KPQVYA 297 (599)
T ss_dssp --CC-----EEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGS--CTTCEEEESSSCCSSCCTTCCCC-CCCEEE
T ss_pred --cc-----eeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccC--ccCCEeeecCCccccccccccCC-CcceEE
Confidence 22 2699999988875 8899999999999884 5 4454 678 9998776112567888876 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEe-----chhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEe
Q 003166 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRE 566 (843)
Q Consensus 492 aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrE 566 (843)
+++|.+..|.++|.++|.+|.++||+|.++ .+|+|.++.| ||||||||+++||+++| |+++.+++|+|+|||
T Consensus 298 ~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~-~et~~~l~~gfr~g~lG~lhlei~~erl~~e~--~~~~~~~~P~V~yre 374 (599)
T 3cb4_D 298 GLFPVSSDDYEAFRDALGKLSLNDASLFYE-PESSSALGFGFRCGFLGLLHMEIIQERLEREY--DLDLITTAPTVVYEV 374 (599)
T ss_dssp EEEESSGGGHHHHHHHHHHHHTTCSSCEEE-EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS--CCCEEECCCEECEEE
T ss_pred EEEecCccCHHHHHHHHHHHHhhCcEEEEE-eccccccccceEEEeccHHHHHHHHHHHHHHc--CceEEEEeeeEEEEE
Confidence 999999999999999999999999999997 5788877777 99999999999999999 999999999999999
Q ss_pred ccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCce
Q 003166 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNM 646 (843)
Q Consensus 567 Ti~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~ 646 (843)
||++.+.. .+ . .|.
T Consensus 375 ti~~g~~~---------------~~-----------~----------------------------------~p~------ 388 (599)
T 3cb4_D 375 ETTSREVI---------------YV-----------D----------------------------------SPS------ 388 (599)
T ss_dssp EESSSCEE---------------EE-----------S----------------------------------SGG------
T ss_pred EecCCceE---------------Ee-----------c----------------------------------Chh------
Confidence 99753200 00 0 010
Q ss_pred EEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeee
Q 003166 647 VVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLL 726 (843)
Q Consensus 647 ~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~Ll 726 (843)
++|..+ .-+.||
T Consensus 389 --------------------------------~~p~~~------------------------------------~~~~ll 400 (599)
T 3cb4_D 389 --------------------------------KLPAVN------------------------------------NIYELR 400 (599)
T ss_dssp --------------------------------GSCCGG------------------------------------GEEEEE
T ss_pred --------------------------------hCCCcc------------------------------------ccchhh
Confidence 112110 002699
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceeec
Q 003166 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||+++|.+|++|+|+|+++|++|||++++++..+ ++..|+|++|++|+ +||.++|||+|+|+|+|+++|+||+++
T Consensus 401 EP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 401 EPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--NQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--TEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--CeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEe
Confidence 999999999999999999999999999999999865 38999999999999 899999999999999999999999999
Q ss_pred ---------CCCCCCC----------chhHHHHHHHHH
Q 003166 806 ---------SSDPLEP----------GSQASQLVLDIR 824 (843)
Q Consensus 806 ---------~~d~~~~----------~~~~~~~~~~~r 824 (843)
.++|.|. ....++++.+.+
T Consensus 479 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 516 (599)
T 3cb4_D 479 DMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMK 516 (599)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred cccccccccCCcEecccceeccHHHHHHHHHHHHHHHH
Confidence 6666552 235677777755
No 11
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=5.7e-63 Score=573.21 Aligned_cols=444 Identities=20% Similarity=0.261 Sum_probs=311.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc------cCCceEeecCccccccccceeeeeeEEEEEeechhhhhcc
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~------~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (843)
..++|||+|+||+|||||||+++|++..+.+... .....+++|+.+.|++||+|+.++...+.|.
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------- 80 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH--------- 80 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET---------
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC---------
Confidence 3568999999999999999999999988776441 0111457899999999999999999988885
Q ss_pred ccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccC
Q 003166 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~ 169 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++|+..+++.+|+.+...++|+++|+||+|+. +.
T Consensus 81 -------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~----~~ 149 (529)
T 2h5e_A 81 -------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRD----IR 149 (529)
T ss_dssp -------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSC----CS
T ss_pred -------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCc----cc
Confidence 8999999999999999999999999999999999999999999999999988999999999999999 77
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003166 170 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
++.++. +++...+.. .+...++|++|+..+.++. |+.....+.|.+
T Consensus 150 ~~~~~~-------~~i~~~l~~-----------~~~~~~~pi~sa~~~~Gv~--------------dl~~~~~~~~~~-- 195 (529)
T 2h5e_A 150 DPMELL-------DEVENELKI-----------GCAPITWPIGCGKLFKGVY--------------HLYKDETYLYQS-- 195 (529)
T ss_dssp CHHHHH-------HHHHHHHCC-----------EEEESEEEESCGGGCCEEE--------------ETTTTEEEECCT--
T ss_pred cHHHHH-------HHHHHHhCC-----------CccceecceecccCcceee--------------ehhhhhHhhhcc--
Confidence 754433 333333321 1222356778876554431 111111122210
Q ss_pred cCCCCCceee-cCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhcc
Q 003166 250 FDPATRKWTS-RNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLP 327 (843)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P 327 (843)
..+..+.. .+.+. .. + + .+.+.+ +++++++|+++ .++..+++. ..+.+++. ..++|
T Consensus 196 --~~g~~~~~~~~i~~--~~----~----~--~l~e~~---~~~~~~~~~e~--~~l~~~~~~---~~~~~~~~~~~~~P 253 (529)
T 2h5e_A 196 --GKGHTIQEVRIVKG--LN----N----P--DLDAAV---GEDLAQQLRDE--LELVKGASN---EFDKELFLAGEITP 253 (529)
T ss_dssp --TCCSSCCCCCEECC--SS----C----H--HHHHHH---CHHHHHHHHHH--HHHHHHHSC---CCCHHHHHTTSEEE
T ss_pred --cCCCcccccccCCC--CC----H----H--HHHHhh---CHHHHHHhhcc--cchhhhhhh---hhhHHHHHhCceeE
Confidence 00000000 00000 00 0 0 111221 45677777776 233222221 11223333 46777
Q ss_pred c----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccC-CCCeEEEEEEeee---cCCCCcee
Q 003166 328 A----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIP---ASDKGRFF 393 (843)
Q Consensus 328 ~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~p~~a~VfK~~~---~~~~g~~l 393 (843)
+ +++|||+|++++|+|.+++.. ...+++ ++||+|+|||+.. ++++|+ +
T Consensus 254 v~~gSA~~~~Gv~~LLd~i~~~~P~P~~~~~~-----------------~~~~~~~~~~~~~~vfKi~~~~d~~~~G~-i 315 (529)
T 2h5e_A 254 VFFGTALGNFGVDHMLDGLVEWAPAPMPRQTD-----------------TRTVEASEDKFTGFVFKIQANMDPKHRDR-V 315 (529)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCSSCCEEBS-----------------SCEECTTCCSCEEEEEEECSSCCSSSSCC-C
T ss_pred EEeeecccCCCHHHHHHHHHHhCCCCCccccc-----------------ccccCCCCCCeEEEEEEEeeccCcCCCce-E
Confidence 5 689999999999999654210 011222 6899999999976 356787 9
Q ss_pred EEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCC
Q 003166 394 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKE 472 (843)
Q Consensus 394 ~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~ 472 (843)
+|+|||||+|++|+.|++.+ .++ .+||++++.++|.+++++++|.|||||++.|++++ ++| |||+.+
T Consensus 316 ~~~RV~sG~l~~g~~v~~~~----~~~-----~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~--~~Gdtl~~~~- 383 (529)
T 2h5e_A 316 AFMRVVSGKYEKGMKLRQVR----TAK-----DVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTI--QIGDTFTQGE- 383 (529)
T ss_dssp EEEEEEESCEETTCEEEETT----TTE-----EEECSCEECCCC-----CCEECTTCEEEECCSSCC--CTTCEEESSC-
T ss_pred EEEEEecCeEcCCCEEEEee----CCC-----EEEeceeeEEeCCCceEcceECCCCEEEEeccCCC--ccCCEeecCC-
Confidence 99999999999999999754 233 27999999999999999999999999999999987 778 999865
Q ss_pred CCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccC
Q 003166 473 VDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMG 551 (843)
Q Consensus 473 ~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~ 551 (843)
...+++++++ .|+++++|+|.++.|.++|.+||++|.+||| +++..+ +|||++|+|||||||||+++||+++|
T Consensus 384 --~~~~~~~~~~-~P~~~~~v~~~~~~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey-- 457 (529)
T 2h5e_A 384 --MMKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEY-- 457 (529)
T ss_dssp --CCCBCCCEEE-CCSEEEEEEESCC---CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHS--
T ss_pred --ccccCCCCCC-CccEEEEEEECChHHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHh--
Confidence 3567888876 9999999999999999999999999999998 788776 89999999999999999999999999
Q ss_pred CeeEEEcCCeEeeEeccccc
Q 003166 552 GAEIIKSDPVVSFRETVLEK 571 (843)
Q Consensus 552 ~v~v~~~~p~V~yrETi~~~ 571 (843)
||++.+++|+|+|||||...
T Consensus 458 ~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 458 NVEAVYESVNVATARWVECA 477 (529)
T ss_dssp SCCEEEECCCCSEEEEEECS
T ss_pred CcEEEEecCceeEEEEEcCC
Confidence 99999999999999999643
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=6.3e-61 Score=555.41 Aligned_cols=440 Identities=21% Similarity=0.285 Sum_probs=333.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--------eEeecCccccccccceeeeeeEEEEEeechhhhh
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
..++|||+|+||+|+|||||+++|++.+|.+.. .|. ..++|+.+.|+++|+|+.++...+.|.
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~--~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------- 80 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQL--AGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK------- 80 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHH--HHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-------
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCccc--ceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-------
Confidence 357899999999999999999999999998855 221 347899999999999999999998886
Q ss_pred ccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccc
Q 003166 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~ 167 (843)
++.++|||||||.+|..++.++++.+|+||+|+|+++|+..++..+|+++...++|+++|+||+|+.
T Consensus 81 ---------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~---- 147 (528)
T 3tr5_A 81 ---------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRD---- 147 (528)
T ss_dssp ---------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSC----
T ss_pred ---------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc----
Confidence 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhc
Q 003166 168 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
+.++.+..+.+ ...+.. .+...++|++++ +.|. +|+.....+.|
T Consensus 148 ~~~~~~~l~ei-------~~~l~~-----------~~~~~~~pig~~~~f~gv----------------~dl~~~~~~~~ 193 (528)
T 3tr5_A 148 TRPSIELLDEI-------ESILRI-----------HCAPVTWPIGMGKYFKGI----------------YHLIEDAIYLY 193 (528)
T ss_dssp CSCHHHHHHHH-------HHHHCC-----------EEEESEEEESCGGGCCEE----------------EETTTTEEEEC
T ss_pred cccHHHHHHHH-------HHhhCC-----------CceeeecccccCCceeEE----------------EEeecCEEEEe
Confidence 87755443332 222211 112235666654 2221 33333333444
Q ss_pred cccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hh
Q 003166 246 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QT 324 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~ 324 (843)
.+. ........+ ..... -++ .+-+.+. ++ +++|+++ +++..++... ..++++. .+
T Consensus 194 ~~~----~~~~~~~~~-----~~~~~----~~~--~~~~~l~---~~-~~~~~e~--~~l~~~~~~~---~~~~~~~~~~ 249 (528)
T 3tr5_A 194 QPG----KHERVGESE-----RIEGI----NNP--ELDKKLG---DL-ASELRNE--IELVKGASHP---FEREGYLKGE 249 (528)
T ss_dssp CTT----SSSSTTCSC-----EEECT----TCH--HHHHHHT---HH-HHHHHHH--HHHHHHHSCC---CCHHHHHTTS
T ss_pred cCC----CCCcccccc-----ccccc----chH--HHHHHHH---HH-HHHHhhh--cchhhhhhhH---HHHHHHhcCc
Confidence 211 000010000 00000 011 1111111 11 5666655 2222111110 0023333 56
Q ss_pred hccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCccccccccccc-CCCCeEEEEEEeee--cC-CCC
Q 003166 325 WLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCD-PEGPLMLYVSKMIP--AS-DKG 390 (843)
Q Consensus 325 ~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~p~~a~VfK~~~--~~-~~g 390 (843)
++|+ ++.|||+|++++|+|.+..... ..++ .++|++|+|||+.. ++ ++|
T Consensus 250 ~~PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~-----------------~~~~~~~~~~~~~VFKi~~~~dp~~~g 312 (528)
T 3tr5_A 250 LTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNS-----------------RLVKPEEEKFSGFVFKIQANMDPGHRD 312 (528)
T ss_dssp EEEEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSS-----------------SCBCTTSSSCEEEEEEEEECCC-CCCC
T ss_pred eeEEEeccccCCccHHHHHHHHHHhCCCCCcccccc-----------------eeeCCCcccceeEEEEEecccCccCCc
Confidence 7786 7999999999999996543210 0112 36899999999985 66 778
Q ss_pred ceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeec
Q 003166 391 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTN 469 (843)
Q Consensus 391 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~ 469 (843)
+ ++|+|||||+|++|+.|++.+ .+++ +|+++++.++|++++++++|.|||||++.|++++ ++| |||+
T Consensus 313 ~-l~~~RV~sG~l~~g~~v~~~~----~~~~-----~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~--~~GDtl~~ 380 (528)
T 3tr5_A 313 R-IAFLRIASGQYQKGMKAYHVR----LKKE-----IQINNALTFMAGKRENAEEAWPGDIIGLHNHGTI--QIGDTFTQ 380 (528)
T ss_dssp E-EEEEEEEESCEETTEEEEETT----TTEE-----EEESSCBCCBTTCSSCCSEECTTCEEEEEESSSC--CTTCEEES
T ss_pred e-EEEEEEecCeEcCCCEEEecC----CCce-----EEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCC--ccCCEEcC
Confidence 7 999999999999999999643 3333 7999999999999999999999999999999887 788 9998
Q ss_pred CCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhh
Q 003166 470 EKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDD 548 (843)
Q Consensus 470 ~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~ 548 (843)
. . ...+.+++++ .|+++++|+|+++.|.+||.+||++|.+|||+ ++..+ +|||++|+|||||||||+++||+++
T Consensus 381 ~-~--~~~~~~~~~~-~P~~~~~i~~~~~~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~e 455 (528)
T 3tr5_A 381 G-E--RFKFTGIPNF-ASELFRLVRLKDPLKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENE 455 (528)
T ss_dssp S-C--CCCBCCCEEE-CCSEEEEEEESCGGGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHH
T ss_pred C-C--CcccCCCCCC-CCCEEEEEEECChhHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 4 3 5667888877 89999999999999999999999999999997 66666 8999999999999999999999999
Q ss_pred ccCCeeEEEcCCeEeeEeccccc
Q 003166 549 FMGGAEIIKSDPVVSFRETVLEK 571 (843)
Q Consensus 549 f~~~v~v~~~~p~V~yrETi~~~ 571 (843)
| ||+|.+++|+|+|+|+|...
T Consensus 456 y--~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 456 Y--NVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp H--CCCEEEECCSCCEEEEEECS
T ss_pred h--CcEEEEecCceEEEEEecCC
Confidence 9 99999999999999999753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=8.8e-39 Score=340.62 Aligned_cols=195 Identities=22% Similarity=0.388 Sum_probs=158.7
Q ss_pred EEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCCC----CC-----hhHHHHHHHHHHhcCCcEEEEE
Q 003166 453 AMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVA----SD-----LPKLVEGLKRLAKSDPMVVCSM 522 (843)
Q Consensus 453 ~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~----~d-----~~kL~~aL~~L~~eDPsl~v~~ 522 (843)
++.||+++ ++| |||+... +.+++++.++ +|+++++|+|.+. .| ..+|.++|.+|.++||+|+|+.
T Consensus 2 av~Gl~~~--~iGDTl~~~~~--p~~L~~~~~~-ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~ 76 (332)
T 3e3x_A 2 NATGLGEL--KISDTICAQNA--VEALPALSVD-EPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQ 76 (332)
T ss_dssp -------------------------------CC-CCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CccCCCCC--ccCCEEcCCCC--cccCCCCCCC-CCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEE
Confidence 57789887 788 9999877 7788889886 9999999999987 65 6799999999999999999999
Q ss_pred c-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhH
Q 003166 523 E-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEA 601 (843)
Q Consensus 523 ~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~ 601 (843)
+ +++|++|+|||||||||+++||+++ |+++.+++|+|+|||| .
T Consensus 77 ~~~t~~~~v~G~GELHLeIl~ErLrrE---g~ev~v~~P~V~YrEt--~------------------------------- 120 (332)
T 3e3x_A 77 TDDPDKFRVSGRGELHLSILIENMRRE---GFELAVSRPEVIIXEE--D------------------------------- 120 (332)
T ss_dssp CSSTTEEEEEESSHHHHHHHHHHHHHH---TBCEEECCCEECCEEE--T-------------------------------
T ss_pred cCCCCeEEEEeeCHHHHHHHHHHHHhc---CceEEEeCCEEEEEEE--C-------------------------------
Confidence 8 8999999999999999999999998 9999999999999995 0
Q ss_pred HhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCC
Q 003166 602 IDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEEN 681 (843)
Q Consensus 602 i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~p 681 (843)
|
T Consensus 121 ---------------------------------------------------G---------------------------- 121 (332)
T 3e3x_A 121 ---------------------------------------------------G---------------------------- 121 (332)
T ss_dssp ---------------------------------------------------T----------------------------
T ss_pred ---------------------------------------------------C----------------------------
Confidence 0
Q ss_pred ccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeeccc
Q 003166 682 MRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR 761 (843)
Q Consensus 682 v~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~ 761 (843)
+||||||+++|.||++++|.|+++|++|||+|.+++..
T Consensus 122 ------------------------------------------~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~ 159 (332)
T 3e3x_A 122 ------------------------------------------QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD 159 (332)
T ss_dssp ------------------------------------------EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC
T ss_pred ------------------------------------------EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC
Confidence 68999999999999999999999999999999999986
Q ss_pred CCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeec-CCCCC
Q 003166 762 PGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM-SSDPL 810 (843)
Q Consensus 762 ~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v-~~d~~ 810 (843)
++ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++ |++.-
T Consensus 160 ~~-g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 160 GK-GRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp SS-SEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCS
T ss_pred CC-CeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccc
Confidence 43 58899999999999999999999999999999999999999 89864
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.97 E-value=4.4e-29 Score=284.14 Aligned_cols=287 Identities=20% Similarity=0.307 Sum_probs=209.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCccccccccceeeeeeEEEEEe
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
....+||+++||+|+|||||+++|++.++.+.... .|. .+++|..++|+++|+|++.....+.+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 35578999999999999999999999998876542 121 347899999999999999988887775
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-------hhHHHHHHHHHcCCCc-
Q 003166 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-------~~t~~~l~~~~~~~~p- 152 (843)
++.++|||||||.+|...+..+++.+|++|+||||.+|+. +||++++..+...++|
T Consensus 94 ----------------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~ 157 (439)
T 3j2k_7 94 ----------------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 157 (439)
T ss_pred ----------------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCe
Confidence 7899999999999999999999999999999999999986 7999999999999999
Q ss_pred eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeec-cceeeeccCccceEEeehhHHHHHhh
Q 003166 153 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPE-KGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~-~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
+|+++||||+. ..++. .+++.++.+++..++..+. +.+. ..++...||+.|++....
T Consensus 158 iIvviNK~Dl~----~~~~~--~~~~~~i~~~~~~~l~~~g--------~~~~~~~~~i~iSA~~G~ni~~l-------- 215 (439)
T 3j2k_7 158 LIVLINKMDDP----TVNWS--NERYEECKEKLVPFLKKVG--------FNPKKDIHFMPCSGLTGANLKEQ-------- 215 (439)
T ss_pred EEEEeecCCCc----ccchH--HHHHHHHHHHHHHHHHHhc--------ccccCCeeEEEeeccCCcccccc--------
Confidence 78999999987 44322 2345555555555554322 1111 123455677666543210
Q ss_pred hcCCCHHHHHH-hhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHH
Q 003166 232 KFGVDESKMME-RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEK 310 (843)
Q Consensus 232 ~~~i~~~~l~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el 310 (843)
.+ .-| |+ +
T Consensus 216 ---------~~~~~w----~~------------------------------------------------g---------- 224 (439)
T 3j2k_7 216 ---------SDFCPW----YI------------------------------------------------G---------- 224 (439)
T ss_pred ---------cccccc----cC------------------------------------------------c----------
Confidence 00 001 00 0
Q ss_pred HHhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCC
Q 003166 311 ELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKG 390 (843)
Q Consensus 311 ~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g 390 (843)
..|++.+ +.+|.|. .+.++|+.+.|..++. +.|
T Consensus 225 -------------------~~L~~~l-~~i~~~~-------------------------~~~~~p~r~~v~~~~~--~~G 257 (439)
T 3j2k_7 225 -------------------LPFIPYL-DNLPNFN-------------------------RSVDGPIRLPIVDKYK--DMG 257 (439)
T ss_pred -------------------hHHHHHH-HhCCCCc-------------------------cCCCCCeEEEEEEEEc--CCC
Confidence 1233322 2355552 1245789999888764 456
Q ss_pred ceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEE--Eeccccccccce-ee
Q 003166 391 RFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVA--MVGLDQYITKNA-TL 467 (843)
Q Consensus 391 ~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~--i~gl~~~~~~tg-TL 467 (843)
. +..+||.+|+|++||.|.+++.+ . ..+|.+|+. ...++++|.|||+|+ +.|++....+.| +|
T Consensus 258 ~-v~~G~v~~G~l~~Gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl 323 (439)
T 3j2k_7 258 T-VVLGKLESGSIFKGQQLVMMPNK----H-----NVEVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFIL 323 (439)
T ss_pred e-EEEEEEEeeEEecCCEEEEccCC----c-----eEEEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEe
Confidence 5 89999999999999999986532 1 258888865 557899999999999 568776655778 88
Q ss_pred ecCCC
Q 003166 468 TNEKE 472 (843)
Q Consensus 468 ~~~~~ 472 (843)
+++++
T Consensus 324 ~~~~~ 328 (439)
T 3j2k_7 324 CDPSN 328 (439)
T ss_pred cCCCC
Confidence 87654
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.97 E-value=5.3e-30 Score=288.55 Aligned_cols=283 Identities=22% Similarity=0.307 Sum_probs=200.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..||+++||+|||||||+++|++..........-..+.+|..+.|+++|+|++.+...+.+. ++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------------~~ 66 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA----------------AR 66 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS----------------SC
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC----------------Ce
Confidence 46899999999999999999987532110000001124788899999999999876655543 68
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHHHHHHH
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
.++|||||||.+|...+.++++.+|++|+|||+++|+..||+++|..+...++| +++++||||+. + +. + .
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~----~-~~-~---~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV----Q-DS-E---M 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC----S-CH-H---H
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC----C-CH-H---H
Confidence 999999999999999999999999999999999999999999999999889999 57899999987 4 21 1 2
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCce
Q 003166 178 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+..+.+++..++..+. +.+...++...|+..|+.- ..
T Consensus 138 ~~~~~~~~~~~l~~~~--------~~~~~~~~i~~SA~~g~n~--------------------------------~~--- 174 (397)
T 1d2e_A 138 VELVELEIRELLTEFG--------YKGEETPIIVGSALCALEQ--------------------------------RD--- 174 (397)
T ss_dssp HHHHHHHHHHHHHHTT--------SCTTTSCEEECCHHHHHTT--------------------------------CC---
T ss_pred HHHHHHHHHHHHHHcC--------CCcccCcEEEeehhhcccc--------------------------------cC---
Confidence 2333334444443221 0011112333444322100 00
Q ss_pred eecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccc-hHHHHHHH
Q 003166 258 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA-SSALLEMM 336 (843)
Q Consensus 258 ~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~-~~~LLd~i 336 (843)
+ .|... +..|++++
T Consensus 175 --------------------~---------------------------------------------~~~~g~i~~Ll~~l 189 (397)
T 1d2e_A 175 --------------------P---------------------------------------------ELGLKSVQKLLDAV 189 (397)
T ss_dssp --------------------T---------------------------------------------TTTHHHHHHHHHHH
T ss_pred --------------------C---------------------------------------------CccCCcHHHHHHHH
Confidence 0 00000 25788889
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003166 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
.+++|.|.. +.++|+.+.|++++..++.|. ++++||++|+|+.||.|++++.+.
T Consensus 190 ~~~~p~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~~~~~ 243 (397)
T 1d2e_A 190 DTYIPVPTR-------------------------DLEKPFLLPVESVYSIPGRGT-VVTGTLERGILKKGDECEFLGHSK 243 (397)
T ss_dssp HHHSCCCCC-------------------------CTTSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEEETTE
T ss_pred HHhCCCCCC-------------------------CCCCcEEEEEEEEEEeCCceE-EEEEEEeeceEeCCCEEEEeCCCC
Confidence 999998831 245799999999998888887 899999999999999999875320
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003166 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 471 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~~ 471 (843)
. ...+|.+|... ..++++|.|||++++. |++....+.| +|+++.
T Consensus 244 ---~----~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 244 ---N----IRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ---E----EEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ---C----eEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 0 12688887652 3679999999999886 6654334678 888754
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.97 E-value=1.2e-29 Score=286.45 Aligned_cols=297 Identities=25% Similarity=0.337 Sum_probs=204.7
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.....+||+++||+|+|||||+++|++....... ...-....+|..++|+++|+|++.....+.+.
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------------- 73 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA------------- 73 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-------------
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-------------
Confidence 3456789999999999999999999874211000 00001125788999999999999877666553
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHH
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~ 172 (843)
+..++|||||||.+|...+.++++.+|++|+|+|+.+|...|++++|..+...++| +++++||+|+. + +.
T Consensus 74 ---~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~----~-~~- 144 (405)
T 2c78_A 74 ---KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV----D-DP- 144 (405)
T ss_dssp ---SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC----C-CH-
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc----C-cH-
Confidence 68999999999999999999999999999999999999999999999999889999 77899999987 4 21
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCC
Q 003166 173 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
+ .+..+.+++..++..+.. .+...++...|+..|++. .+. .+
T Consensus 145 ~---~~~~~~~~~~~~l~~~~~--------~~~~~~~i~~SA~~g~~v--------------------~~~--~~----- 186 (405)
T 2c78_A 145 E---LLDLVEMEVRDLLNQYEF--------PGDEVPVIRGSALLALEQ--------------------MHR--NP----- 186 (405)
T ss_dssp H---HHHHHHHHHHHHHHHTTS--------CTTTSCEEECCHHHHHHH--------------------HHH--CT-----
T ss_pred H---HHHHHHHHHHHHHHHhcc--------cccCCCEEEccHHHhhhh--------------------hcc--cc-----
Confidence 1 222333334444432210 111113444555433211 000 00
Q ss_pred CCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHH
Q 003166 253 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 332 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 332 (843)
.+.. + . ..|.+.+..|
T Consensus 187 ---~~~~----~--------------------------------------~-------------------~~~~~~i~~L 202 (405)
T 2c78_A 187 ---KTRR----G--------------------------------------E-------------------NEWVDKIWEL 202 (405)
T ss_dssp ---TCCT----T--------------------------------------S-------------------CHHHHHHHHH
T ss_pred ---cccc----C--------------------------------------C-------------------CcccccHHHH
Confidence 0000 0 0 0011113578
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEc
Q 003166 333 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 412 (843)
Q Consensus 333 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 412 (843)
++++.+++|.|.. +.++|+.++|..++..++.|. ++++||+||+|+.||.|+++
T Consensus 203 l~~l~~~lp~p~~-------------------------~~~~p~~~~v~~v~~~~~~G~-v~~g~v~~G~l~~gd~v~~~ 256 (405)
T 2c78_A 203 LDAIDEYIPTPVR-------------------------DVDKPFLMPVEDVFTITGRGT-VATGRIERGKVKVGDEVEIV 256 (405)
T ss_dssp HHHHHHHSCCCCC-------------------------CCSSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEE
T ss_pred HHHHHhhcCCCCC-------------------------CCCCCcEEEEEEEEEcCCCce-EEEEEEecccccCCCEEEEe
Confidence 9999999998831 245789999999888888887 89999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003166 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 471 (843)
Q Consensus 413 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~~ 471 (843)
+.+. + ....+|.+|... ..++++|.|||++++. |++....+.| +|+++.
T Consensus 257 ~~~~--~----~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 257 GLAP--E----TRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp SSSS--S----CEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred CCCC--C----eeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 5321 0 013688888642 3689999999999886 6644334678 888754
No 17
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.96 E-value=1e-29 Score=297.59 Aligned_cols=328 Identities=19% Similarity=0.205 Sum_probs=213.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc--ccCC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQG 95 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~ 95 (843)
+..+|+++||+|||||||+++|++.... ++ ..+|+|.......+.|............ ..+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~------------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA------------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS------------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc------------cc----cCCceecccCeEEEeechhhhhcccccccccccc
Confidence 3568999999999999999999764311 10 1135665544444433210000000000 0011
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccc-c--cc----
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFL-E--LQ---- 168 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~-~--~~---- 168 (843)
....++|||||||.+|..++.++++.+|++|+|+|+++|+++||..+|+++...++|+++|+||||+.-. . .+
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 2336999999999999999999999999999999999999999999999999999999999999999610 0 00
Q ss_pred ----CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeecc----------ceeeeccCccceEEeehhHHHHHhhhcC
Q 003166 169 ----VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEK----------GTVAFSAGLHGWAFTLTNFAKMYASKFG 234 (843)
Q Consensus 169 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~----------~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 234 (843)
.+.+.+.+.+.+.+.++...+.... +.+.. .++..+|+..|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~g--------l~~e~~~~l~~~~~~vpvv~vSA~tG----------------- 202 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEG--------FESERFDRVTDFASQVSIIPISAITG----------------- 202 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTT--------CEEEEGGGCSCTTTEEEEEECCTTTC-----------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcC--------cchHHHHHHHhccCcceEEEEeccCC-----------------
Confidence 0123333344444433332222100 00000 00001111000
Q ss_pred CCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhh
Q 003166 235 VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMG 314 (843)
Q Consensus 235 i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~ 314 (843)
.
T Consensus 203 ------------------------------------------------------------------~------------- 203 (594)
T 1g7s_A 203 ------------------------------------------------------------------E------------- 203 (594)
T ss_dssp ------------------------------------------------------------------T-------------
T ss_pred ------------------------------------------------------------------C-------------
Confidence 0
Q ss_pred HHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeE
Q 003166 315 KALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFA 394 (843)
Q Consensus 315 ~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~ 394 (843)
.+..||+++..++|+|.+. ...+++++|+.++|||+..+++.|. ++
T Consensus 204 -------------GI~eLl~~I~~~~~~~~~~--------------------~l~~~~~~p~~~~V~~~~~d~g~G~-v~ 249 (594)
T 1g7s_A 204 -------------GIPELLTMLMGLAQQYLRE--------------------QLKIEEDSPARGTILEVKEETGLGM-TI 249 (594)
T ss_dssp -------------THHHHHHHHHHHHHHHCSG--------------------GGEECTTSBCEEEEEEEEEETTEEE-EE
T ss_pred -------------CchhHHHHHHhhccccchh--------------------hhccccCCCceeEEEEEEEeCCcEE-EE
Confidence 1245677777777665321 0123567899999999999998887 99
Q ss_pred EEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEe--------cCCeeeecccc--CCCEEEEeccccccccc
Q 003166 395 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM--------GKKQETVEDVP--CGNTVAMVGLDQYITKN 464 (843)
Q Consensus 395 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~--------g~~~~~v~~a~--AGdIv~i~gl~~~~~~t 464 (843)
++||++|+|++||.|++.+.+ .. ...+|.+|+.+. |.+..++++|. ||+++++.||+++ .+
T Consensus 250 ~~rV~~G~Lk~Gd~v~~~~~~----~~---~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~--~~ 320 (594)
T 1g7s_A 250 DAVIYDGILRKDDTIAMMTSK----DV---ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV--MA 320 (594)
T ss_dssp EEEEEESEEETTCEEEEEBSS----SE---EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB--CT
T ss_pred EEEEeeCEEeeCCEEEECCCC----Cc---eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEEEcccCCC--CC
Confidence 999999999999999976422 21 125999999873 67788999998 9999999999987 67
Q ss_pred e-eeecCCCCCcc--------cccccccCCCceEEEEEEeCCCCChhHHHHHHHHH
Q 003166 465 A-TLTNEKEVDAH--------PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRL 511 (843)
Q Consensus 465 g-TL~~~~~~~~~--------~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L 511 (843)
| ||+...+ .. .+..+... .+.+.+.|.+......+.|.++|.++
T Consensus 321 Gd~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~vkad~~gs~eal~~~l~~~ 373 (594)
T 1g7s_A 321 GSPLRVVTD--PEKVREEILSEIEDIKID-TDEAGVVVKADTLGSLEAVVKILRDM 373 (594)
T ss_dssp TCEEEECSS--HHHHHHHHHHHHHTTSCB-CSSSCCEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEecCC--HHHHHHHHHHHHHhcccc-cccccEEEEeCCCCCHHHHHHHHHhC
Confidence 8 8887654 10 12223332 55667778888888888888888876
No 18
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.96 E-value=1e-29 Score=289.41 Aligned_cols=289 Identities=25% Similarity=0.370 Sum_probs=190.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCccccccccceeeeeeEEEEEee
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
+..+||+++||+|+|||||+++|++.++.+.+.. .|. .+++|+.++|+++|+|++.....+.+.
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~- 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK- 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-
Confidence 4578999999999999999999999877665321 121 145899999999999999887777664
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcCCCc-e
Q 003166 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR-P 153 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~~~p-~ 153 (843)
++.++|||||||.+|..++.++++.+|++|+|+|+++| +..|+++++..+...++| +
T Consensus 83 ---------------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~i 147 (435)
T 1jny_A 83 ---------------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL 147 (435)
T ss_dssp ---------------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTC
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 78999999999999999999999999999999999999 888999999999888885 7
Q ss_pred EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhc
Q 003166 154 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKF 233 (843)
Q Consensus 154 ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~ 233 (843)
++++||||+. +.+.. .+++..+.+++..++..+. +.+...++...|+..|.+...
T Consensus 148 ivviNK~Dl~----~~~~~--~~~~~~~~~~i~~~~~~~~--------~~~~~~~~i~iSA~~g~~v~e----------- 202 (435)
T 1jny_A 148 IVAVNKMDLT----EPPYD--EKRYKEIVDQVSKFMRSYG--------FNTNKVRFVPVVAPSGDNITH----------- 202 (435)
T ss_dssp EEEEECGGGS----SSTTC--HHHHHHHHHHHHHHHHHTT--------CCCTTCEEEECBTTTTBTTTB-----------
T ss_pred EEEEEcccCC----Ccccc--HHHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecccCccccc-----------
Confidence 7999999998 63211 1234445555555554322 111111334445544331100
Q ss_pred CCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHh
Q 003166 234 GVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELM 313 (843)
Q Consensus 234 ~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~ 313 (843)
.+. . + +++++
T Consensus 203 ------------------------------------~~~-------------------~-~-~~~~g------------- 212 (435)
T 1jny_A 203 ------------------------------------KSE-------------------N-M-KWYNG------------- 212 (435)
T ss_dssp ------------------------------------CCS-------------------S-C-TTCCS-------------
T ss_pred ------------------------------------ccc-------------------c-c-ccccc-------------
Confidence 000 0 0 00000
Q ss_pred hHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCcee
Q 003166 314 GKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFF 393 (843)
Q Consensus 314 ~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l 393 (843)
..||+++.. +|+|.. +.++|+.+.|..++..++.|. +
T Consensus 213 ----------------~~Ll~~l~~-~~~p~~-------------------------~~~~~~~~~v~~v~~~~~~G~-v 249 (435)
T 1jny_A 213 ----------------PTLEEYLDQ-LELPPK-------------------------PVDKPLRIPIQDVYSISGVGT-V 249 (435)
T ss_dssp ----------------CCHHHHHTT-CCCCCC-------------------------GGGSCCBEEEEEEEEETTTEE-E
T ss_pred ----------------hhHHHHHhc-cCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-E
Confidence 246666554 444521 013455555555555567776 9
Q ss_pred EEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecC
Q 003166 394 AFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNE 470 (843)
Q Consensus 394 ~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~ 470 (843)
+++||+||+|++||.|++++. +. ..+|++|.. ...++++|.|||+|++. |++...+++| +|++.
T Consensus 250 ~~g~v~~G~l~~gd~v~~~p~----~~-----~~~V~~i~~----~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~ 316 (435)
T 1jny_A 250 PVGRVESGVLKVGDKIVFMPA----GK-----VGEVRSIET----HHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP 316 (435)
T ss_dssp EEEECCBSCEETTCEEEEETT----TE-----EEEEEEEEE----TTEEESEECTTCEEEEEEESSCGGGCCTTCEEECT
T ss_pred EEEEEecCeEEcCCEEEECCc----ee-----EEEEEEEEE----CCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCC
Confidence 999999999999999998642 12 279999965 24789999999999984 5543334778 89876
Q ss_pred CC
Q 003166 471 KE 472 (843)
Q Consensus 471 ~~ 472 (843)
..
T Consensus 317 ~~ 318 (435)
T 1jny_A 317 NN 318 (435)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 19
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=2.3e-29 Score=295.77 Aligned_cols=288 Identities=21% Similarity=0.272 Sum_probs=174.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEEEee
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
..++||+++||+|+|||||+++|++.++.+... ..|. .+++|..++|+++|+|++.....+.+.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 457899999999999999999999988776543 1121 458899999999999999988877765
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-------chhHHHHHHHHHcCCCc-e
Q 003166 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR-P 153 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~~t~~~l~~~~~~~~p-~ 153 (843)
++.++|||||||.+|...+..+++.+|++|||||+.+|. ..||+.++..+...++| +
T Consensus 254 ---------------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~i 318 (592)
T 3mca_A 254 ---------------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEI 318 (592)
T ss_dssp --------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCE
T ss_pred ---------------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeE
Confidence 689999999999999999999999999999999999864 89999999999999998 7
Q ss_pred EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhh-hhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhh
Q 003166 154 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIM-ATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (843)
Q Consensus 154 ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 232 (843)
|+|+||||+. +++.+ ++..+.+++..++ ..+. +.+...++...|+..|++.....
T Consensus 319 IvviNKiDl~----~~~~~----~~~~i~~el~~~l~~~~g--------~~~~~~~ii~iSA~~G~gI~e~~-------- 374 (592)
T 3mca_A 319 VVSVNKLDLM----SWSED----RFQEIKNIVSDFLIKMVG--------FKTSNVHFVPISAISGTNLIQKD-------- 374 (592)
T ss_dssp EEEEECGGGG----TTCHH----HHHHHHHHHHHHHTTTSC--------CCGGGEEEEEECSSSCSSSCSCC--------
T ss_pred EEEEeccccc----cccHH----HHHHHHHHHHHHHHHhhC--------CCccceEEEEEecccCccccccc--------
Confidence 7899999998 76633 3445555555554 3211 12222245556776665432100
Q ss_pred cCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHH
Q 003166 233 FGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKEL 312 (843)
Q Consensus 233 ~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~ 312 (843)
... ..-|
T Consensus 375 ----~~~--~~~w------------------------------------------------------------------- 381 (592)
T 3mca_A 375 ----SSD--LYKW------------------------------------------------------------------- 381 (592)
T ss_dssp ----CCG--GGGT-------------------------------------------------------------------
T ss_pred ----ccc--cccc-------------------------------------------------------------------
Confidence 000 0001
Q ss_pred hhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCce
Q 003166 313 MGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRF 392 (843)
Q Consensus 313 ~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~ 392 (843)
.- ...|++++..++|.+ .+.++|+.+.|..++.. ..|.
T Consensus 382 -------------~~-g~~Lle~l~~~~pp~--------------------------~~~~~p~r~~v~~v~~~-~~g~- 419 (592)
T 3mca_A 382 -------------YK-GPTLLSALDQLVPPE--------------------------KPYRKPLRLSIDDVYRS-PRSV- 419 (592)
T ss_dssp -------------CC-SCCHHHHHHTSCCCS--------------------------CTTTSCCEEEEEEEEEE-TTEE-
T ss_pred -------------cc-hHHHHHHHHhhcccc--------------------------ccccccchheeeEEEec-CCeE-
Confidence 00 024666676777632 12457899999998877 5555
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeec-cccCCCEEEE--eccccccccce-eee
Q 003166 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVE-DVPCGNTVAM--VGLDQYITKNA-TLT 468 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~-~a~AGdIv~i--~gl~~~~~~tg-TL~ 468 (843)
+..+||.+|+|++||.|.+++.+ . ..+|..|.. ...+++ +|.|||+|++ .|++...++.| +|+
T Consensus 420 v~~G~v~~G~l~~Gd~v~i~p~~----~-----~~~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~ 486 (592)
T 3mca_A 420 TVTGRVEAGNVQVNQVLYDVSSQ----E-----DAYVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILS 486 (592)
T ss_dssp EEEEEEEESEEETTCEEEETTTT----E-----EEEEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEE
T ss_pred EEEEEEeeeeEccCCEEEEccCC----c-----eEEEEEEEE----cCccCcceecCCCEEEEEEccccccccceEEEec
Confidence 88999999999999999986432 1 258888874 346789 9999999985 57765445778 888
Q ss_pred cCCC
Q 003166 469 NEKE 472 (843)
Q Consensus 469 ~~~~ 472 (843)
++..
T Consensus 487 ~~~~ 490 (592)
T 3mca_A 487 NYEN 490 (592)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 7654
No 20
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=1.8e-27 Score=274.48 Aligned_cols=305 Identities=20% Similarity=0.300 Sum_probs=194.3
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEE
Q 003166 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGIS 76 (843)
Q Consensus 12 ~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~ 76 (843)
.+.......||+++||+|+|||||+++|++..+.+... ..|. .+++|....|+++|+|++.....
T Consensus 26 ~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 105 (483)
T 3p26_A 26 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 105 (483)
T ss_dssp HHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE
T ss_pred HHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE
Confidence 33334567799999999999999999999998876542 1221 35789999999999999998887
Q ss_pred EEEeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcC
Q 003166 77 LYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGE 149 (843)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~ 149 (843)
+.+. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|+++++..+...
T Consensus 106 ~~~~----------------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~ 169 (483)
T 3p26_A 106 FSTH----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL 169 (483)
T ss_dssp EECS----------------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT
T ss_pred EecC----------------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc
Confidence 7664 78999999999999999999999999999999999998 678999999999888
Q ss_pred CCc-eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHH
Q 003166 150 RIR-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKM 228 (843)
Q Consensus 150 ~~p-~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~ 228 (843)
+++ +|+++||||+. +++.. ++.++.+++..++..+. +.+...++...|+..|.+...-
T Consensus 170 ~~~~iIvviNK~Dl~----~~~~~----~~~~i~~~~~~~l~~~g--------~~~~~~~~i~iSA~~g~gi~el----- 228 (483)
T 3p26_A 170 GIHNLIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYKI----- 228 (483)
T ss_dssp TCCCEEEEEECGGGG----TTCHH----HHHHHHHHHHHHHHHHT--------CCGGGEEEEECCSSSCTTSSSS-----
T ss_pred CCCcEEEEEECcCcc----cchHH----HHHHHHHHHHHHHHHcC--------CCcccceEEEEeeecCCCcccc-----
Confidence 875 78899999998 65422 33444444444443221 1111223455666655432100
Q ss_pred HhhhcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHH
Q 003166 229 YASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSE 308 (843)
Q Consensus 229 ~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~ 308 (843)
. ......-| |..
T Consensus 229 -------~-~~~~~~~w----y~g-------------------------------------------------------- 240 (483)
T 3p26_A 229 -------E-YTDEVRQW----YNG-------------------------------------------------------- 240 (483)
T ss_dssp -------C-CCHHHHHH----CCS--------------------------------------------------------
T ss_pred -------C-cccccccc----cCC--------------------------------------------------------
Confidence 0 00000111 100
Q ss_pred HHHHhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecC-
Q 003166 309 EKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS- 387 (843)
Q Consensus 309 el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~- 387 (843)
|....+|+.+...+|.+. + ..+.+.|+.+.|..++..+
T Consensus 241 ------------------~~L~~~L~~i~~~~~~~~-----------p------------~~~~~~p~r~~v~~v~~~~~ 279 (483)
T 3p26_A 241 ------------------PNLMSTLENAAFKISKEN-----------E------------GINKDDPFLFSVLEIIPSKK 279 (483)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH-----------T------------TCCSSSCCEEEEEEEEC---
T ss_pred ------------------CCHHHHHHHHHhhccccc-----------c------------cccCCCceEEEEEEEEccCC
Confidence 001234555544444410 0 0124678888888887654
Q ss_pred --CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCCeeeeccccCCCEEEEe--cccc
Q 003166 388 --DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAMV--GLDQ 459 (843)
Q Consensus 388 --~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdIv~i~--gl~~ 459 (843)
..|. +..+||.+|+|++||.|.+++.+ . ..+|.+|.... |.+..++++|.|||+|++. +++.
T Consensus 280 ~~g~g~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~~~~ 349 (483)
T 3p26_A 280 TSNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYP 349 (483)
T ss_dssp CCSCCE-EEEEEEEESEECTTCEEEEETTT----E-----EEEEEEEEETTTC-----CCEESCEETTCEEEEEEESCCG
T ss_pred cCCCce-EEEEEEecceEccCCEEEEeCCC----C-----eEEEEEEEEcCccccccccccccEECCCCEEEEEEEeccc
Confidence 2454 89999999999999999986532 1 26888888652 4457899999999999983 3322
Q ss_pred ccccce-eeecCCC
Q 003166 460 YITKNA-TLTNEKE 472 (843)
Q Consensus 460 ~~~~tg-TL~~~~~ 472 (843)
...+.| +|++++.
T Consensus 350 ~di~rG~vl~~~~~ 363 (483)
T 3p26_A 350 EDIQNGDLAASVDY 363 (483)
T ss_dssp GGCCTTCEEECTTC
T ss_pred ccCCceEEEEcCCC
Confidence 223667 8887543
No 21
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.95 E-value=9.4e-28 Score=290.43 Aligned_cols=284 Identities=21% Similarity=0.319 Sum_probs=187.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....||+++||+|+|||||+++|++..........-....+|..+.|+++|+|++.....+.+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~---------------- 357 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP---------------- 357 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS----------------
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC----------------
Confidence 4568999999999999999999987531100000001235788899999999999887766553
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHHHHH
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~~~~ 175 (843)
+..++|||||||.+|...+.++++.+|++|+|||+++|+..||+++|..+...++| +|+++||||+. + +. +
T Consensus 358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv----~-d~-e-- 429 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV----D-DE-E-- 429 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC----C-CH-H--
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc----c-ch-h--
Confidence 78999999999999999999999999999999999999999999999998888999 67899999987 4 21 1
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCC
Q 003166 176 QTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 255 (843)
Q Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
++..+.+++..++..+.. .+...++...|++.||.
T Consensus 430 -~le~i~eEi~elLk~~G~--------~~~~vp~IpvSAktG~n------------------------------------ 464 (1289)
T 3avx_A 430 -LLELVEMEVRELLSQYDF--------PGDDTPIVRGSALKALE------------------------------------ 464 (1289)
T ss_dssp -HHHHHHHHHHHHHHHTTS--------CTTTCCEEECCSTTTTT------------------------------------
T ss_pred -hHHHHHHHHHHHHHhccc--------cccceeEEEEEeccCCC------------------------------------
Confidence 233333444444432210 01111344445533310
Q ss_pred ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHH
Q 003166 256 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEM 335 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~ 335 (843)
+ .+-| + ++ +..|+++
T Consensus 465 --------g------------~~~w--~---------------eG----------------------------I~eLlea 479 (1289)
T 3avx_A 465 --------G------------DAEW--E---------------AK----------------------------ILELAGF 479 (1289)
T ss_dssp --------C------------CHHH--H---------------HH----------------------------HHHHHHH
T ss_pred --------C------------Cccc--c---------------cc----------------------------chhhHhH
Confidence 0 0000 0 01 2578888
Q ss_pred HHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCC
Q 003166 336 MIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 415 (843)
Q Consensus 336 i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 415 (843)
+.+++|.|.. +.++|+.+.|..++..++.|. ++++||++|+|++||.|.+++.+
T Consensus 480 L~~~Ip~P~r-------------------------~~d~Pfr~pId~Vf~i~G~Gt-VvtGrV~sGtLkvGD~V~I~ps~ 533 (1289)
T 3avx_A 480 LDSYIPEPER-------------------------AIDKPFLLPIEDVFSISGRGT-VVTGRVERGIIKVGEEVEIVGIK 533 (1289)
T ss_dssp HHHTSCCCCC-------------------------GGGSCCEEECCEEEEETTTEE-EEEEECCBSEEETTCEEEEESSS
T ss_pred HhhhcCCCcc-------------------------ccccceeeeccccccccCCcE-EEEEEEeccEEecCCEEEEecCC
Confidence 8999998831 135789998888887788887 99999999999999999987532
Q ss_pred CCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003166 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 471 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~~ 471 (843)
.. ...+|..|.. ...++++|.|||+|++. |++....+.| +|+++.
T Consensus 534 ----~~---~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~ 581 (1289)
T 3avx_A 534 ----ET---QKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581 (1289)
T ss_dssp ----SC---EEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred ----Cc---eeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccEEecCC
Confidence 10 1268888854 23678999999998875 6654444678 888754
No 22
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.95 E-value=2.6e-27 Score=270.93 Aligned_cols=302 Identities=24% Similarity=0.358 Sum_probs=207.3
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEE
Q 003166 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISL 77 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~ 77 (843)
|.......||+++||+|+|||||+++|++..+.+... ..|. ..++|..++|+++|+|++.....+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 3434556899999999999999999999987655431 1232 135688899999999999988777
Q ss_pred EEeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-------hHHHHHHHHHcCC
Q 003166 78 YYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-------QTETVLRQALGER 150 (843)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-------~t~~~l~~~~~~~ 150 (843)
.+. ++.++|||||||.+|...+..+++.+|++|+|||+.+|+.. ||++++..+...+
T Consensus 81 ~~~----------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~ 144 (458)
T 1f60_A 81 ETP----------------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG 144 (458)
T ss_dssp ECS----------------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT
T ss_pred ecC----------------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcC
Confidence 664 78999999999999999999999999999999999999866 9999999888889
Q ss_pred Cc-eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHH
Q 003166 151 IR-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 151 ~p-~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
+| +|+++||||+. +++.+ ++..+.+++..++..+. +.+...++...|++.|++....
T Consensus 145 v~~iivviNK~Dl~----~~~~~----~~~~i~~~~~~~l~~~g--------~~~~~~~~i~vSA~~g~nv~~~------ 202 (458)
T 1f60_A 145 VRQLIVAVNKMDSV----KWDES----RFQEIVKETSNFIKKVG--------YNPKTVPFVPISGWNGDNMIEA------ 202 (458)
T ss_dssp CCEEEEEEECGGGG----TTCHH----HHHHHHHHHHHHHHHHT--------CCGGGCCEEECCTTTCBTTTBC------
T ss_pred CCeEEEEEEccccc----cCCHH----HHHHHHHHHHHHHHHcC--------CCccCceEEEeecccCcCcccc------
Confidence 97 78899999998 65533 23344444444443321 1111124555677666533110
Q ss_pred hhhcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHH
Q 003166 230 ASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEE 309 (843)
Q Consensus 230 ~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~e 309 (843)
.. ..-| |.. |......+ .++
T Consensus 203 --------~~--~~~~----~~~----~~~~~~tg---------------------------------------~~~--- 222 (458)
T 1f60_A 203 --------TT--NAPW----YKG----WEKETKAG---------------------------------------VVK--- 222 (458)
T ss_dssp --------CS--SCTT----CCC----EEEECSSS---------------------------------------EEE---
T ss_pred --------cc--cCch----hhc----cccccccc---------------------------------------ccc---
Confidence 00 0011 110 11100000 000
Q ss_pred HHHhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCC
Q 003166 310 KELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK 389 (843)
Q Consensus 310 l~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~ 389 (843)
...|++++.. +|.|. .+.+.|+.++|..++..++.
T Consensus 223 -------------------~~~Ll~~l~~-~~~p~-------------------------~~~~~p~r~~i~~v~~~~g~ 257 (458)
T 1f60_A 223 -------------------GKTLLEAIDA-IEQPS-------------------------RPTDKPLRLPLQDVYKIGGI 257 (458)
T ss_dssp -------------------ESSHHHHHHT-SCCCC-------------------------CCTTSCCEEEEEEEEEETTT
T ss_pred -------------------hHHHHHHhhc-cCCCc-------------------------ccCCCCcEEEEEEEEEeCCC
Confidence 0245555443 45551 02357899999999888888
Q ss_pred CceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-e
Q 003166 390 GRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-T 466 (843)
Q Consensus 390 g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-T 466 (843)
|. +..+||.+|+++.||.|.+++.+ . ..+|.++.. ...++++|.|||++++. |++....+.| +
T Consensus 258 G~-v~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~~~i~rG~v 323 (458)
T 1f60_A 258 GT-VPVGRVETGVIKPGMVVTFAPAG----V-----TTEVKSVEM----HHEQLEQGVPGDNVGFNVKNVSVKEIRRGNV 323 (458)
T ss_dssp EE-EEEEECCBSCBCTTCEEEEETTT----E-----EEEEEEEEE----TTEECSCBCTTCEEEEEESSCCTTTSCTTCE
T ss_pred cE-EEEEEEeCCeEcCCCEEEECCCC----c-----eEEEeEEEE----CCeEEEEEcCCCEEEEEEcCCcccccCceeE
Confidence 86 99999999999999999987532 1 268888874 23679999999998874 6643334667 8
Q ss_pred eecCC
Q 003166 467 LTNEK 471 (843)
Q Consensus 467 L~~~~ 471 (843)
|++..
T Consensus 324 l~~~~ 328 (458)
T 1f60_A 324 CGDAK 328 (458)
T ss_dssp EEETT
T ss_pred EecCC
Confidence 87754
No 23
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.95 E-value=1.4e-27 Score=273.83 Aligned_cols=289 Identities=21% Similarity=0.319 Sum_probs=169.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEEEee
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
...+||+++||+|||||||+++|++.+|.+... ..|. .+.+|..++|+++|+|++.....+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 457899999999999999999999988876431 1232 346899999999999999887777664
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-------hhHHHHHHHHHcCCCc-e
Q 003166 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-P 153 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-------~~t~~~l~~~~~~~~p-~ 153 (843)
+..++|||||||.+|...+.++++.+|++|||||+.+|+. +||++++..+...++| +
T Consensus 120 ---------------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 120 ---------------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ---------------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred ---------------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 7899999999999999999999999999999999999973 7999999999889998 8
Q ss_pred EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhc-cCCCCCCeeeee-ccceeeeccCccceEEeehhHHHHHhh
Q 003166 154 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGDVQVYP-EKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 154 ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~p-~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
|+++||||+. ..+++ .++++.+.+++..++..+ . +.+ ...++...|+..|++..--
T Consensus 185 ivviNK~Dl~----~~~~~--~~~~~~i~~e~~~~l~~~~g--------~~~~~~~~~i~vSA~~g~~i~~l-------- 242 (467)
T 1r5b_A 185 VVVINKMDEP----SVQWS--EERYKECVDKLSMFLRRVAG--------YNSKTDVKYMPVSAYTGQNVKDR-------- 242 (467)
T ss_dssp EEEEECTTST----TCSSC--HHHHHHHHHHHHHHHHHHHC--------CCHHHHEEEEECBTTTTBTTSSC--------
T ss_pred EEEEECccCC----Ccccc--HHHHHHHHHHHHHHHHHhcC--------CCccCCceEEecccccccccccc--------
Confidence 8999999996 43211 123444444444444321 1 000 0112344566554322100
Q ss_pred hcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHH
Q 003166 232 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 311 (843)
+ +... .
T Consensus 243 -~-----------------~~~~----------------------~---------------------------------- 248 (467)
T 1r5b_A 243 -V-----------------DSSV----------------------C---------------------------------- 248 (467)
T ss_dssp -C-----------------CTTT----------------------C----------------------------------
T ss_pred -c-----------------cccc----------------------C----------------------------------
Confidence 0 0000 0
Q ss_pred HhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCc
Q 003166 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~ 391 (843)
.|+.. ..|++.+ +.+|.|.. +.++|+.+.|..++. ..|.
T Consensus 249 ------------~w~~g-~~L~~~l-~~i~~~~~-------------------------~~~~p~~~~v~~~~~--~~G~ 287 (467)
T 1r5b_A 249 ------------PWYQG-PSLLEYL-DSMTHLER-------------------------KVNAPFIMPIASKYK--DLGT 287 (467)
T ss_dssp ------------SSCCS-CCHHHHH-HHCCCCHH-------------------------HHTSCCEEECCEEEE--SSSE
T ss_pred ------------ccccc-hhHHHHH-HhCCCCcC-------------------------CCCCCcEEEEEEEEe--CCCe
Confidence 01000 1233332 23565521 124688888888765 3565
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eee
Q 003166 392 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~ 468 (843)
+..+||.+|+|+.||.|.+++.+ . ..+|.+|+. ....++++|.|||+|++ .| +....+.| +|+
T Consensus 288 -v~~G~v~~G~l~~gd~v~~~p~~-----~----~~~V~~i~~---~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~ 353 (467)
T 1r5b_A 288 -ILEGKIEAGSIKKNSNVLVMPIN-----Q----TLEVTAIYD---EADEEISSSICGDQVRLRVRG-DDSDVQTGYVLT 353 (467)
T ss_dssp -EEEEECCBSEEETTEEEEEETTT-----E----EEEEEEEEC---TTCCEESEEETTCEEEEEEES-CCTTCCTTCEEE
T ss_pred -EEEEEEeeeEEeeCCEEEEccCC-----e----eEEEEEEec---cCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEe
Confidence 99999999999999999986421 1 257877764 23578999999999988 46 33334667 888
Q ss_pred cCCC
Q 003166 469 NEKE 472 (843)
Q Consensus 469 ~~~~ 472 (843)
++..
T Consensus 354 ~~~~ 357 (467)
T 1r5b_A 354 STKN 357 (467)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 7543
No 24
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.95 E-value=9.6e-27 Score=258.55 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=94.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++||+++||+|+|||||+++|+ +||+|++.+...+.+. +
T Consensus 20 ~m~~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~----------------~ 59 (370)
T 2elf_A 20 HMANVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKE----------------G 59 (370)
T ss_dssp CEEEEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSS----------------S
T ss_pred cCCEEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecC----------------C
Confidence 35599999999999999999993 5788998887766654 6
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEE-cCCc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN-KMDR 162 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviN-K~D~ 162 (843)
+.++|||||||.+|..++.++++.+|+||+||| .+|+.+||++++..+...++|. |+++| |||+
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 789999999999999999999999999999999 9999999999999999999998 89999 9996
No 25
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.95 E-value=8.6e-27 Score=265.42 Aligned_cols=297 Identities=21% Similarity=0.233 Sum_probs=190.4
Q ss_pred HHHHHhhcc--cCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCce-------EeecCcccccccc
Q 003166 7 EELRRIMDF--KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRQDEAERG 67 (843)
Q Consensus 7 ~~~~~~~~~--~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-------~~~D~~~~E~~rg 67 (843)
..+.+++.. ....+||+++||+|||||||+++|++..+.+.... .|++ ..+|..++|++||
T Consensus 10 ~~i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rG 89 (434)
T 1zun_B 10 EDILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQG 89 (434)
T ss_dssp ------CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----
T ss_pred hhHHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCC
Confidence 345555543 24468999999999999999999999886654321 1221 2478889999999
Q ss_pred ceeeeeeEEEEEeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH
Q 003166 68 ITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL 147 (843)
Q Consensus 68 iTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~ 147 (843)
+|++.+...+.+. +..++|||||||.+|...+..+++.+|++|+|+|+.+|+..|+++++..+.
T Consensus 90 iTi~~~~~~~~~~----------------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~ 153 (434)
T 1zun_B 90 ITIDVAYRYFSTA----------------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIAS 153 (434)
T ss_dssp CCCCCEEEEEECS----------------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred cEEEeeeeEeecC----------------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH
Confidence 9999887766654 788999999999999999999999999999999999999999999999888
Q ss_pred cCCCc-eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHH
Q 003166 148 GERIR-PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFA 226 (843)
Q Consensus 148 ~~~~p-~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a 226 (843)
..++| +|+++||+|+. +++++ ++..+.+++..++..+... ....++...|+..|++...-
T Consensus 154 ~~~~~~iIvviNK~Dl~----~~~~~----~~~~i~~~~~~~~~~~g~~--------~~~~~~i~vSA~~g~gi~~~--- 214 (434)
T 1zun_B 154 LLGIKHIVVAINKMDLN----GFDER----VFESIKADYLKFAEGIAFK--------PTTMAFVPMSALKGDNVVNK--- 214 (434)
T ss_dssp HTTCCEEEEEEECTTTT----TSCHH----HHHHHHHHHHHHHHTTTCC--------CSEEEEEECCTTTCTTTSSC---
T ss_pred HcCCCeEEEEEEcCcCC----cccHH----HHHHHHHHHHHHHHHhCCC--------ccCceEEEEeccCCCCcccc---
Confidence 88886 77899999998 66532 2333444444444332100 00113444566554322100
Q ss_pred HHHhhhcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCC
Q 003166 227 KMYASKFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMK 306 (843)
Q Consensus 227 ~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~ 306 (843)
+. ..-| |+. ..|
T Consensus 215 ------~~-------~~~w----~~g--------------------------------------------------~~L- 226 (434)
T 1zun_B 215 ------SE-------RSPW----YAG--------------------------------------------------QSL- 226 (434)
T ss_dssp ------CT-------TCTT----CCS--------------------------------------------------CCT-
T ss_pred ------cc-------cCcc----ccC--------------------------------------------------chH-
Confidence 00 0001 000 000
Q ss_pred HHHHHHhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeec
Q 003166 307 SEEKELMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPA 386 (843)
Q Consensus 307 ~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~ 386 (843)
..+|+ .+|.|.. +.++|+.+.|..++..
T Consensus 227 -----------------------~~~l~----~i~~~~~-------------------------~~~~~~~~~v~~v~~~ 254 (434)
T 1zun_B 227 -----------------------MEILE----TVEIASD-------------------------RNYTDLRFPVQYVNRP 254 (434)
T ss_dssp -----------------------THHHH----HSCCTTC-------------------------CCSSSCEEECCEEECS
T ss_pred -----------------------HHHHh----cCCCccc-------------------------CCCCCcEEEEEEEecc
Confidence 11222 2354410 1346788877776654
Q ss_pred CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-
Q 003166 387 SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA- 465 (843)
Q Consensus 387 ~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg- 465 (843)
...++ ...+||.+|+|+.||.|.+++.+ . ..+|.+|.... .++++|.|||++++...+....+.|
T Consensus 255 ~~~~~-g~~G~v~~G~l~~gd~v~~~p~~----~-----~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~ 320 (434)
T 1zun_B 255 NLNFR-GFAGTLASGIVHKGDEIVVLPSG----K-----SSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGD 320 (434)
T ss_dssp SSSCC-EEEEECCBSCEETTCEEEETTTC----C-----EEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTC
T ss_pred CCCce-EEEEEEecceEeCCCEEEEecCC----e-----EEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCcc
Confidence 44454 56799999999999999986421 1 26888888643 4799999999999986543333567
Q ss_pred eeecCCC
Q 003166 466 TLTNEKE 472 (843)
Q Consensus 466 TL~~~~~ 472 (843)
+|+++..
T Consensus 321 ~l~~~~~ 327 (434)
T 1zun_B 321 LLVHADN 327 (434)
T ss_dssp EEEETTS
T ss_pred EEECCCC
Confidence 8887654
No 26
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.2e-27 Score=276.45 Aligned_cols=300 Identities=20% Similarity=0.296 Sum_probs=206.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEEE
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYY 79 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 79 (843)
......||+++||+|+|||||+++|++..+.+... ..|. .+++|..+.|+++|+|++.....+.+
T Consensus 163 ~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~ 242 (611)
T 3izq_1 163 SALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST 242 (611)
T ss_dssp CCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec
Confidence 33456699999999999999999999887776542 1221 34678899999999999998888776
Q ss_pred eechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcCCCc
Q 003166 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR 152 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~~~p 152 (843)
. ++.++|||||||.+|...+..+++.+|++|+|||+.+| +..|++.++..+...++|
T Consensus 243 ~----------------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~ 306 (611)
T 3izq_1 243 H----------------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIH 306 (611)
T ss_dssp S----------------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCC
T ss_pred C----------------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCC
Confidence 5 78999999999999999999999999999999999998 578999999999888887
Q ss_pred -eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhh
Q 003166 153 -PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 -~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
+|+|+||||+. +++.. ++.++.+++..++..+. +.+...++...|+..|.+...-
T Consensus 307 ~iIVVvNKiDl~----~~~~~----~~~ei~~~l~~~l~~~g--------~~~~~~~~i~vSA~tG~gI~el-------- 362 (611)
T 3izq_1 307 NLIIAMNKMDNV----DWSQQ----RFEEIKSKLLPYLVDIG--------FFEDNINWVPISGFSGEGVYKI-------- 362 (611)
T ss_dssp EEEEEEECTTTT----TTCHH----HHHHHHHHHHHHHHHHT--------CCGGGCEEEECCTTTCTTTSSC--------
T ss_pred eEEEEEeccccc----chhHH----HHHHHHHHHHHHHHhhc--------ccccCccEEeeecccCCCcccc--------
Confidence 77899999998 65422 33444444444443221 1111223455666555322100
Q ss_pred hcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHH
Q 003166 232 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 311 (843)
.. .....-| |.+
T Consensus 363 ----~~-~~~~~~W----y~g----------------------------------------------------------- 374 (611)
T 3izq_1 363 ----EY-TDEVRQW----YNG----------------------------------------------------------- 374 (611)
T ss_dssp ----TT-SCTTCCS----CCS-----------------------------------------------------------
T ss_pred ----Cc-ccccccc----ccC-----------------------------------------------------------
Confidence 00 0000001 100
Q ss_pred HhhHHHHHHHHHhhccchHHHHHHHHhcCCC--hhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecC--
Q 003166 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPS--PATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPAS-- 387 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPs--P~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~-- 387 (843)
|....+|+.+...+|. |. .+.+.|+.+.|..++..+
T Consensus 375 ---------------~~L~~~L~~l~~~~p~~~p~-------------------------~~~~~p~r~~V~~v~~~~~~ 414 (611)
T 3izq_1 375 ---------------PNLMSTLENAAFKISKENEG-------------------------INKDDPFLFSVLEIIPSKKT 414 (611)
T ss_dssp ---------------CCHHHHHTTSCCCCCCSSSC-------------------------CSCCSCCEEECCEEECCSSS
T ss_pred ---------------CcHHHHHHHHhhcccccCcc-------------------------cccccchhhheeeeeccCcc
Confidence 0012344444444444 21 124678888888887755
Q ss_pred -CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEe----cCCeeeeccccCCCEEEE--eccccc
Q 003166 388 -DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWM----GKKQETVEDVPCGNTVAM--VGLDQY 460 (843)
Q Consensus 388 -~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~----g~~~~~v~~a~AGdIv~i--~gl~~~ 460 (843)
..|. +..+||.+|+|++||.|.+++.+ . ..+|.+|.... |....++++|.|||+|++ .|++..
T Consensus 415 ~g~g~-v~~G~V~~G~lk~Gd~v~~~p~~----~-----~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~~~~~ 484 (611)
T 3izq_1 415 SNDLA-LVSGKLESGSIQPGESLTIYPSE----Q-----SCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRKAYPE 484 (611)
T ss_dssp CSSSS-EEEEEEEESEECTTCEEEETTTT----E-----EEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESSCCTT
T ss_pred CCCee-EEEEEEEeceeccCCEEEEecCC----c-----eEEEEEEEEcccccccccccccceecCCCcceEEeeeccHh
Confidence 3455 89999999999999999986432 1 25888887652 556789999999999998 344322
Q ss_pred cccce-eeecCCC
Q 003166 461 ITKNA-TLTNEKE 472 (843)
Q Consensus 461 ~~~tg-TL~~~~~ 472 (843)
..+.| +|+++..
T Consensus 485 di~rGdvl~~~~~ 497 (611)
T 3izq_1 485 DIQNGDLAASVDY 497 (611)
T ss_dssp SCCTTCEEBCSTT
T ss_pred hCcceEEccCCCC
Confidence 23677 8887543
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.95 E-value=3.1e-26 Score=259.02 Aligned_cols=134 Identities=30% Similarity=0.394 Sum_probs=103.3
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc--
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER-- 93 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~-- 93 (843)
....+||+++||+|||||||+++|+ | ..+|..++|+++|+|+......+.+...... ..+....
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~-~~y~~~~~~ 72 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT-----------G--VWTDTHSEELRRGITIKIGFADAEIRRCPNC-GRYSTSPVC 72 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH-----------T--CCCC--CGGGGSCSSSCCEEEEEEEEECTTT-CCEESSSBC
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh-----------C--CccccChhhhcCCcEEEEeeeeeeccccccc-ccccccccc
Confidence 3557899999999999999999994 2 1356678899999999988776665310000 0000000
Q ss_pred C--CC----ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCC-ceEEEEEcCCcc
Q 003166 94 Q--GN----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 94 ~--~~----~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~-p~ilviNK~D~~ 163 (843)
. ++ ...++|||||||.+|..++.++++.+|++|+||||.+|+ .+||.+++..+...++ |+++++||||+.
T Consensus 73 ~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~ 150 (410)
T 1kk1_A 73 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV 150 (410)
T ss_dssp TTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence 0 11 278999999999999999999999999999999999998 9999999988877776 577899999987
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=8.2e-25 Score=247.16 Aligned_cols=133 Identities=27% Similarity=0.357 Sum_probs=96.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc--cC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE--RQ 94 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~--~~ 94 (843)
+...||+++||+|||||||+++|+ | ...|...+|+++|+|+......+.+..... ...+... ..
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~-----------g--~~~~~~~~e~~~giTi~~~~~~~~~~~~~~-~~~y~~~~~~~ 71 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALT-----------G--VWTDRHSEELRRGISIRLGYADCEIRKCPQ-CGTYTTKPRCP 71 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHH-----------S--CCCCC-------CCCCCCEEEEEEEEECTT-TCCEESSSBCT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHh-----------C--CccccCcccccCCcEEEecccccccccccc-ccccccccccc
Confidence 456799999999999999999993 3 135667789999999988766554421000 0000000 00
Q ss_pred --C----CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCC-ceEEEEEcCCcc
Q 003166 95 --G----NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 95 --~----~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~-p~ilviNK~D~~ 163 (843)
+ ....++|||||||.+|...+.++++.+|++|+|+|+++|+ .+||.+++..+...++ |+++++||+|+.
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 1 1278999999999999999999999999999999999998 8999999988877776 577999999987
No 29
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.92 E-value=1.1e-26 Score=265.42 Aligned_cols=114 Identities=29% Similarity=0.429 Sum_probs=97.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+.++|+++||+|||||||+++|+...- . ....+|+|++.....+.++ +
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v--~--------------~~e~~GIT~~i~~~~v~~~----------------~ 50 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV--A--------------SGEAGGITQHIGAYHVETE----------------N 50 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH--S--------------BTTBCCCCCCSSCCCCCTT----------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC--c--------------cccCCCeeEeEEEEEEEEC----------------C
Confidence 567999999999999999999965321 0 1123678887665544443 5
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++|||||||.+|...+.++++.+|++|||+|+.+|+.+||.++|.++...++|+|+++||||+.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEecccc
Confidence 689999999999999999999999999999999999999999999999999999999999999998
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=7.7e-24 Score=238.84 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=94.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..||+++||+|||||||+++|+............ .........+..++++.......+.+. .....
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 73 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSD-----------DEPKF 73 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCC-----------SCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceeccccccccccc-----------ccccc
Confidence 445699999999999999999996532111100011 111112233344555543321111110 00112
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCC-ceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~-p~ilviNK~D~~ 163 (843)
...++|||||||.+|...+..+++.+|++|+|+|+.+|. ..|+++++..+...+. |+++++||+|+.
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 378999999999999999999999999999999999998 8999999998887776 688899999987
No 31
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=2.3e-25 Score=256.09 Aligned_cols=122 Identities=34% Similarity=0.449 Sum_probs=93.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..||+++||+|+|||||+++|+... ....+|..++|+++|+|++.....+.+.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~---------~~~~~d~~~~e~~~GiTi~~~~~~~~~~---------------- 71 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA---------STSAHDKLPESQKRGITIDIGFSAFKLE---------------- 71 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEET----------------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC---------cccccccccccccCccEEecceEEEEEC----------------
Confidence 446799999999999999999995332 1235788889999999999888777774
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++.++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.+++..+...++|.++++||+|+.
T Consensus 72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSS
T ss_pred CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999987
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=3.6e-25 Score=255.03 Aligned_cols=114 Identities=30% Similarity=0.419 Sum_probs=94.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|+++||+|||||||+++|....-. .+...|+|.+.....+.+. ++.
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~----------------~~~~~giT~~i~~~~v~~~---------------~g~ 52 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVA----------------AMEAGGITQHIGAFLVSLP---------------SGE 52 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHH----------------HSSSCCBCCCTTSCCBCSS---------------CSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc----------------cccCCceeEEEeEEEEEeC---------------CCC
Confidence 457999999999999999999654311 1123456665544433332 256
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||..+|.++...++|+++++||+|+.
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGT
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998
No 33
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.61 E-value=2.7e-15 Score=162.00 Aligned_cols=119 Identities=24% Similarity=0.189 Sum_probs=91.2
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
....+.++|+++|++|+|||||+++|++....+....+++ |.......+.+
T Consensus 2 ~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~t---------------Tr~~i~~i~~~-------------- 52 (301)
T 1wf3_A 2 AEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQT---------------TRKRLRGILTE-------------- 52 (301)
T ss_dssp -CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCC---------------CCSCEEEEEEE--------------
T ss_pred CCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCc---------------eeEEEEEEEEe--------------
Confidence 3345567899999999999999999986654332221221 22111111223
Q ss_pred CCCceEEEEEcCCCCcc--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
++.+++||||||+.+ |...+..+++.+|++++|+|++++....+..+++++... ++|+++|+||+|+.
T Consensus 53 --~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~ 130 (301)
T 1wf3_A 53 --GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA 130 (301)
T ss_dssp --TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred --CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence 278999999999987 677888999999999999999999988888888888776 89999999999987
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.55 E-value=1.3e-14 Score=165.11 Aligned_cols=115 Identities=23% Similarity=0.318 Sum_probs=86.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+.....+.. ...|+|.+.....+.+. +
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~---------------~~~gtT~d~~~~~~~~~----------------~ 222 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYN----------------Q 222 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEEEET----------------T
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec---------------CCCCceeeeeEEEEEEC----------------C
Confidence 4579999999999999999999654332221 23456666655566664 6
Q ss_pred eEEEEEcCCCCcc----------chHH-HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVD----------FSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d----------f~~e-~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++||||||+.+ |... ...+++.+|++++|+|+++|...|+..++..+...++|+++++||+|+.
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 7899999999843 3222 3468899999999999999999999998888888899999999999987
No 35
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=4e-14 Score=149.51 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=86.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|++....+... + ..++|.......+.|.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~--~------------~~~~t~~~~~~~~~~~---------------- 69 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKL--G------------SQTLTKTCSKSQGSWG---------------- 69 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT--T------------SCCCCCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCC--C------------CCceeeeeEEEEEEeC----------------
Confidence 456799999999999999999998765443221 1 1124555444455564
Q ss_pred ceEEEEEcCCCCccch-----------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC-----CCceEEEEE-c
Q 003166 97 EYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN-K 159 (843)
Q Consensus 97 ~~~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~-----~~p~ilviN-K 159 (843)
++.++||||||+.++. ..+..+++.+|++|+|+|+.. +..+...+++.+... +.|+++++| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 7899999999998863 223347788999999999985 777778787777654 678888888 9
Q ss_pred CCcc
Q 003166 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|+.
T Consensus 149 ~Dl~ 152 (260)
T 2xtp_A 149 EDLN 152 (260)
T ss_dssp GGGT
T ss_pred cccC
Confidence 9998
No 36
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.54 E-value=8.5e-15 Score=144.44 Aligned_cols=115 Identities=27% Similarity=0.434 Sum_probs=90.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-. . ....++|.......+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~---------------- 53 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVT--E--------------QEAGGITQHIGAYQVTVN---------------- 53 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSS--C--------------SSCCSSSTTCCCCEEEET----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccc--c--------------CCCCceeEeeeEEEEEeC----------------
Confidence 45679999999999999999999543211 0 011123333333334443
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..++||||||+.+|.......++.+|++++|+|+.++...++...+..+...++|+++++||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCC
Confidence 6789999999999998877788899999999999999988888888888877889999999999998
No 37
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.54 E-value=4e-14 Score=153.44 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=89.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+.+.-.|+++|++|+|||||+++|+...-.+..... +.|.......+.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~---------------~tT~~~~~~~~~~~--------------- 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKA---------------GTTRMRVLGVKNIP--------------- 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEET---------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCC---------------CceeeEEEEEEecC---------------
Confidence 345668999999999999999999765433222112 23333222222221
Q ss_pred CceEEEEEcCCCCccch----------HHHHHHhhccCeEEEEEeCCCccchhHHHH-HHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFS----------SEVTAALRITDGALVVVDCIEGVCVQTETV-LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~----------~e~~~~l~~~D~ailVvda~~gv~~~t~~~-l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+..++||||||+.++. ..+..+++.+|++++|+|+.++...++..+ +..+...++|+++|+||+|+.
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 27889999999997654 677889999999999999999999999988 667777789999999999986
No 38
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.52 E-value=1.6e-14 Score=155.95 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=84.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++||+|+|||||+++|++....+....++ .|.......+.+ ++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~---------------tTr~~~~gi~~~----------------~~ 55 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---------------TTRHRIVGIHTE----------------GA 55 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS---------------CCSSCEEEEEEE----------------TT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCC---------------cceeeEEEEEEE----------------CC
Confidence 35689999999999999999997653222111111 122111112333 27
Q ss_pred eEEEEEcCCCCc-c--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHV-D--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~-d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++++||||+. . |...+..+++.+|++++|+|+.+ +..+++.+++.+...+.|.++++||+|+.
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNV 129 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTC
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccC
Confidence 799999999998 3 33445667889999999999988 99999999988887889999999999988
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.50 E-value=1.2e-13 Score=133.52 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=83.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|+++|+.|+|||||+++|+........ ...+.|.......+.+. +.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 49 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETD----------------RG 49 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeC----------------Cc
Confidence 478999999999999999999654321111 11123333333333343 56
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+ +...+...++.+|++++|+|+.++.......+.+.+...++|+++++||+|+.
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSG
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccc
Confidence 899999999987 45566778899999999999999887777777777777789999999999987
No 40
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.49 E-value=7e-14 Score=143.57 Aligned_cols=117 Identities=16% Similarity=0.134 Sum_probs=82.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCc-cccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+..... ... ...|.|.......+.+ .
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~---------------~~~~~t~~~~~~~~~~---------------~ 76 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS---------------KTPGRTQHINYFSVGP---------------A 76 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT---------------CCCCSCCCEEEEEESC---------------T
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeec---------------CCCCcccceEEEEecC---------------C
Confidence 34679999999999999999999654311 111 1123344332222211 1
Q ss_pred CceEEEEEcCCCCcc----------chHHHHHHh---hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCc
Q 003166 96 NEYLINLIDSPGHVD----------FSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~d----------f~~e~~~~l---~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
++..++||||||+.+ |...+...+ ..+|++++|+|+.++.......+++.+...++|+++|+||+|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 357899999999743 233333444 4488899999999998888888888888889999999999998
Q ss_pred c
Q 003166 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 157 ~ 157 (223)
T 4dhe_A 157 L 157 (223)
T ss_dssp S
T ss_pred C
Confidence 7
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.49 E-value=7.1e-14 Score=159.90 Aligned_cols=115 Identities=23% Similarity=0.324 Sum_probs=89.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. +
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 242 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN---------------VAGTTRDAVDTSFTYN----------------Q 242 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------------CTTSEEEEET----------------T
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCC---------------CCCeEEEEEEEEEEEC----------------C
Confidence 46799999999999999999997544332221 2245555555555554 6
Q ss_pred eEEEEEcCCC----------CccchHH-HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPG----------HVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPG----------h~df~~e-~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++|||||| +..|... ...+++.+|++|+|+|+.+++..++..++.++...++|+++|+||+|+.
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 7899999999 4555544 4458899999999999999999999999999989999999999999987
No 42
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.48 E-value=2e-13 Score=143.18 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=87.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|+.....+.... ..|.|.......+.+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~T~~~~~~~~~~~---------------- 68 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG--------------ATSVTRACTTGSRRWD---------------- 68 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEET----------------
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCC--------------CCCccccEEEEEEEEC----------------
Confidence 3456999999999999999999976654332210 1133444444445553
Q ss_pred ceEEEEEcCCCC--------ccchHHHHHHh----hccCeEEEEEeCCCccchhHHHHHHHHHcC------CCceEEEEE
Q 003166 97 EYLINLIDSPGH--------VDFSSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTVN 158 (843)
Q Consensus 97 ~~~i~liDTPGh--------~df~~e~~~~l----~~~D~ailVvda~~gv~~~t~~~l~~~~~~------~~p~ilviN 158 (843)
+..++||||||. .+|..++.+++ +.+|++|+|+|+.. ....+..+++.+... +.|+++|.|
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 788999999998 66777777777 89999999999985 666676666666543 678999999
Q ss_pred cCCcccccccCCHHHH
Q 003166 159 KMDRCFLELQVDGEEA 174 (843)
Q Consensus 159 K~D~~~~~~~~~~~~~ 174 (843)
|+|+. +.+.++.
T Consensus 148 K~Dl~----~~~~~~~ 159 (247)
T 3lxw_A 148 KEDLA----GGSLHDY 159 (247)
T ss_dssp GGGGT----TCCHHHH
T ss_pred hHhcC----CCCHHHH
Confidence 99998 6664443
No 43
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.47 E-value=2.7e-14 Score=160.49 Aligned_cols=115 Identities=22% Similarity=0.202 Sum_probs=87.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...++|+++|+.|+|||||+++|+.... ...+..+|+|++.....+.+. .
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~---------------~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELH---------------P 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEET---------------T
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEEC---------------C
Confidence 4578999999999999999999943221 122345677888777777664 2
Q ss_pred ceEEEEEcCCCCccchH-------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...++|||||||.+|.. .+..+++.+|++|+|+|+ +...++..++..+...++|+++|+||+|+.
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 34899999999998743 367788899999999999 788999999999999999999999999998
No 44
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.44 E-value=3e-13 Score=142.52 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=83.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|+++|++|+|||||+++|..... .. ....|+|++.....+.+. +.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~----------~v------~~~pg~Tv~~~~~~~~~~----------------~~ 48 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ----------RV------GNWPGVTVEKKTGEFLLG----------------EH 48 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE----------EE------EECTTSSSEEEEEEEEET----------------TE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC----------Cc------cCCCCceEEEEEEEEEEC----------------Ce
Confidence 46899999999999999999943320 11 112367777666666664 67
Q ss_pred EEEEEcCCCCccchHH----------HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSE----------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e----------~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++||||||+.+|... ....+ +.+|++|+|+|++. ......++.++...++|+++++||+|+.
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIA 123 (256)
T ss_dssp EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHH
T ss_pred EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 9999999999988642 23344 78999999999987 3445566677778899999999999986
No 45
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.42 E-value=4.5e-13 Score=152.49 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++|+.....+... ..|+|.+.....+.|. +..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~---------------~~g~T~d~~~~~~~~~----------------~~~ 50 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVED---------------EEGVTRDPVQDTVEWY----------------GKT 50 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecC---------------CCCCccceeeEEEEEC----------------CeE
Confidence 579999999999999999996543222221 2356666666667775 778
Q ss_pred EEEEcCCCCcc---------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d---------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.||||||... +...+..+++.||++++|+|+.+|.......+.+.+...++|+++++||+|..
T Consensus 51 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 51 FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred EEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 99999999765 34567788999999999999999998888877777777789999999999976
No 46
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.42 E-value=4.3e-13 Score=142.62 Aligned_cols=112 Identities=16% Similarity=0.217 Sum_probs=84.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
++++|+++|++|+|||||+++|+.... ......|+|++.....+.+. +
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~----------------~ 49 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYR----------------E 49 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEEC----------------C
Confidence 367999999999999999999943311 11123466777666666664 6
Q ss_pred eEEEEEcCCCCccchHH------HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCC-CceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e------~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p~ilviNK~D~~ 163 (843)
..++||||||+.+|... +...+ ..+|++++|+|++.+ ......+.++...+ +|+++++||+|+.
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLL 122 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHH
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcC
Confidence 78999999999988652 33333 579999999999985 45566677777778 9999999999965
No 47
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.42 E-value=8.3e-13 Score=132.32 Aligned_cols=114 Identities=13% Similarity=0.201 Sum_probs=79.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...... . . ....|.|...... .+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~--~-----------~~~~~~t~~~~~~--~~----------------- 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA-R--T-----------SSKPGKTQTLNFY--II----------------- 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEE--EE-----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-c--c-----------CCCCCceeeEEEE--EE-----------------
Confidence 456799999999999999999996432100 0 0 0111223322211 11
Q ss_pred ceEEEEEcCCC----------CccchHHHHHHhhcc---CeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPG----------HVDFSSEVTAALRIT---DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPG----------h~df~~e~~~~l~~~---D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.|||||| +..|...+...++.+ |++++|+|+.++.......+++.+...++|+++++||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKI 147 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 23689999999 444555555566666 99999999999988888878888877889999999999987
No 48
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.42 E-value=1.7e-12 Score=132.46 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=83.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
...+..+|+++|+.|+|||||+++|+...- ... ..|+......+.+. .
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~-----------------~~~~~~~~~~~~~~-------------~ 50 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQY--RDT-----------------QTSITDSSAIYKVN-------------N 50 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCC--CCB-----------------CCCCSCEEEEEECS-------------S
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCc--ccc-----------------cCCcceeeEEEEec-------------C
Confidence 345567999999999999999999965431 110 01111111223332 1
Q ss_pred CCceEEEEEcCCCCccchH-HHHHHhhccCeEEEEEeCCCccchhHH---HHHHHHH------cCCCceEEEEEcCCccc
Q 003166 95 GNEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTE---TVLRQAL------GERIRPVLTVNKMDRCF 164 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~~t~---~~l~~~~------~~~~p~ilviNK~D~~~ 164 (843)
..+..++||||||+.+|.. .....++.+|++|+|+|+++ ...... ..|.... ..++|+++|+||+|+.
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~- 128 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA- 128 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST-
T ss_pred CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC-
Confidence 1257899999999999988 56667899999999999986 222222 2232221 2368999999999987
Q ss_pred ccccC-CHHHHHHHHHHHHHH
Q 003166 165 LELQV-DGEEAYQTFQKVIEN 184 (843)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~~~~ 184 (843)
.. ..++..+.+.+.+..
T Consensus 129 ---~~~~~~~~~~~l~~~l~~ 146 (214)
T 2fh5_B 129 ---MAKSAKLIQQQLEKELNT 146 (214)
T ss_dssp ---TCCCHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHH
Confidence 54 445555555554443
No 49
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.42 E-value=5.3e-13 Score=133.59 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=82.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||++.|........ .+.. .......+. |+. ..+... .....+++
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~---~~~~-~~~~~~~~~----t~~-----~~~~~~------~~~~~~~~ 72 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGR---KGEM-VSLATEDER----TLF-----FDFLPL------DIGEVKGF 72 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGG---BCCC-EEEECSSCE----EEE-----EEECCS------SCCCSSSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccc---cccc-ccccccccc----cee-----eeeccc------ccccccCC
Confidence 3456999999999999999976633211110 1100 000000001 111 111100 00012345
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc---------CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~---------~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 7789999999999999999999999999999999998766665544443322 478999999999987
No 50
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.41 E-value=6.9e-13 Score=133.27 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=81.1
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+...-.. .++.+ |+......+.+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~----------~~~~~-------t~~~~~~~~~~---------------- 60 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSS----------KHITA-------TVGYNVETFEK---------------- 60 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC--------------CCCC-------CSSEEEEEEEE----------------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcc----------ccccc-------ccceeEEEEEe----------------
Confidence 4567899999999999999999994322110 01111 22222222333
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHcC-----------CCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGE-----------RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~~-----------~~p~ilviNK~D~~ 163 (843)
.+..++||||||+.+|.......++.+|++|+|+|++++...... ..+..+... ++|+++|+||+|+.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 378999999999999998888899999999999999987654443 333444333 78999999999987
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=133.58 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=82.8
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+...- ..+...+++.......+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~------------- 54 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTF----------------SGSYITTIGVDFKIRTVEIN------------- 54 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC-------------------CCTTTBSEEEEEEEEEET-------------
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCC----------------CCccCCCceeEEEEEEEEEC-------------
Confidence 3446678999999999999999999932211 01112233433333333332
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH--cCCCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
+..+.++|+||||+.+|.......++.+|++++|+|++++........| ..+. ..++|+++|+||+|+.
T Consensus 55 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 55 -GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP 126 (181)
T ss_dssp -TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred -CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence 2247899999999999988888899999999999999986555443333 2222 2357889999999987
No 52
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.41 E-value=1.5e-12 Score=130.06 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+........ ...|.|.... ....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~t~~~~---~~~~---------------- 66 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS---------------KTPGKTRSIN---FYLV---------------- 66 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC---------------SSCCCCCCEE---EEEE----------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccccc---------------CCCCCccCeE---EEEE----------------
Confidence 34568999999999999999999655411111 1112233221 1111
Q ss_pred ceEEEEEcCCC----------CccchHHHHHHhh---ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPG----------HVDFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPG----------h~df~~e~~~~l~---~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.+||||| +..|.......++ .+|++++|+|+..+.......+++.+...++|+++|+||+|+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 44688999999 3334444444444 4599999999999888888888888888899999999999987
No 53
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.41 E-value=1.4e-12 Score=128.25 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=81.9
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+...-.. +....++.......+.+.
T Consensus 2 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------- 52 (177)
T 1wms_A 2 AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDT----------------QLFHTIGVEFLNKDLEVD------------- 52 (177)
T ss_dssp CCCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC--------------------CCSEEEEEEEEEET-------------
T ss_pred CCccceeEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeEEEEEEEEC-------------
Confidence 334456799999999999999999996542110 001111222222222232
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH---c----CCCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---G----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~---~----~~~p~ilviNK~D~~ 163 (843)
+....+.|+||||+.+|.......++.+|++++|+|+.++...+....|. ... . .++|+++++||+|+.
T Consensus 53 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 53 -GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp -TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred -CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 23468999999999999998889999999999999999876544433222 221 1 567999999999986
No 54
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.40 E-value=5.9e-13 Score=133.40 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=84.1
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+...-.. +...+++.......+.+.
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~------------- 61 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELD------------- 61 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS----------------CCCCCSSEEEEEEEEEET-------------
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------CCCCcccceEEEEEEEEC-------------
Confidence 334557899999999999999999996532111 111223333333333332
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
+..+.+.|+||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++++||+|+.
T Consensus 62 -~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 -GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp -TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred -CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 2347899999999999999999999999999999999986544333323 2222 3378999999999986
No 55
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.40 E-value=1.2e-12 Score=138.34 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|++|+|||||+++|++....... ...+.|.......+.+.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~---------------- 82 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS---------------PFQAEGLRPVMVSRTMG---------------- 82 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC---------------SSCC-CCCCEEEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC---------------CCCCcceeeEEEEEEEC----------------
Confidence 45679999999999999999999765432211 11234555545555554
Q ss_pred ceEEEEEcCCCCccchHHH---HHHhh------ccCeEEEEEeCCC-ccchhHHHHHHHHHcC---C--CceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEV---TAALR------ITDGALVVVDCIE-GVCVQTETVLRQALGE---R--IRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~---~~~l~------~~D~ailVvda~~-gv~~~t~~~l~~~~~~---~--~p~ilviNK~D 161 (843)
+..++||||||+.+|.... ...+. .+|++++|+|... +.......+++.+... + .|+++++||+|
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 7799999999998875332 22222 7899999988765 3333334455444332 2 38889999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 163 l~ 164 (262)
T 3def_A 163 FS 164 (262)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.40 E-value=7.5e-13 Score=131.47 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+........ ...++.......+.+. ++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~ 57 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS----------------NHTIGVEFGSKIINVG--------------GK 57 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC----------------CCCSEEEEEEEEEEET--------------TE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC----------------CCccceEEEEEEEEEC--------------CE
Confidence 45679999999999999999999654321110 0112222222222222 22
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|...+...++.+|++|+|+|++++...+....| ......++|+++++||+|+.
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 46899999999999999999999999999999999986654443333 22224578999999999986
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.40 E-value=1.4e-12 Score=128.54 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=81.1
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
..+.+..+|+++|+.|+|||||+++|+...-. ....+ ..+.+.. ..+.+.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~------------t~~~~~~---~~~~~~------------- 53 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDP------------TIEDSYT---KICSVD------------- 53 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCT------------TCCEEEE---EEEEET-------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCC------------CcCceEE---EEEEEC-------------
Confidence 34466789999999999999999999765211 10011 0011111 112221
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+....+.|+||||+.+|.......++.+|++++|+|+++....... .+++.....++|+++++||+|+.
T Consensus 54 -~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 54 -GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp -TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred -CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999988888899999999999999975433322 22233334578999999999987
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.39 E-value=1.3e-12 Score=128.86 Aligned_cols=119 Identities=20% Similarity=0.174 Sum_probs=70.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+...-... ....++.+.....+.+. ++
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------~~ 55 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ----------------YKATIGADFLTKEVTVD-------------GD 55 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------------C---CCCSCEEEEECCS-------------SS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc----------------cCCccceEEEEEEEEEc-------------CC
Confidence 45678999999999999999999965431100 00111111111122221 12
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc-------CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG-------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~-------~~~p~ilviNK~D~~ 163 (843)
....+.|+||||+.+|.......++.+|++|+|+|+.++........|. .+.. .++|+++++||+|+.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 3578999999999999988888999999999999999875544433332 2211 578999999999985
No 59
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.39 E-value=1.4e-12 Score=128.28 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=81.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+........ . ...|.+.... .+.+ ++.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~------------~t~~~~~~~~--~~~~--------------~~~ 62 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC--P------------HTIGVEFGTR--IIEV--------------SGQ 62 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSC--T------------TSCCCCEEEE--EEEE--------------TTE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--C------------CccceEEEEE--EEEE--------------CCe
Confidence 45679999999999999999999654321100 0 0112222211 1222 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHH---HcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~---~~~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++++|+|+.++........| ..+ ...++|+++++||+|+.
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 57899999999999999999999999999999999987554443333 222 23578899999999986
No 60
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.39 E-value=2.6e-12 Score=124.69 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=77.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+...-. ++. . |+......+.+ ++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~------------~~~---~----t~~~~~~~~~~----------------~~~~~ 46 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV------------TTI---P----TIGFNVETVEY----------------KNISF 46 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS------------CCC---C----CSSCCEEEEEC----------------SSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC------------ccc---C----cCceeEEEEEE----------------CCEEE
Confidence 7999999999999999999654311 010 1 22111222333 26889
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|+++.-..... ..+..... .+.|+++++||+|+.
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 9999999999998888899999999999999986443332 22333322 378999999999987
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.3e-12 Score=131.07 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=80.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-. .+....++.+.....+.+. +..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~~ 74 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC----------------EACKSTVGVDFKIKTVELR--------------GKK 74 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC------------------------CCTTEEEEEEEEEET--------------TEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC----------------cCCCCccceeEEEEEEEEC--------------CeE
Confidence 3568999999999999999999332110 0111112222222223332 235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HH---HcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~---~~~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|.......++.+|++|+|+|++++...+....|. .+ ...++|+++|+||+|+.
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 68999999999999999999999999999999999876655543332 22 23478999999999986
No 62
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.38 E-value=5.5e-12 Score=122.32 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- .....+. .+.+. ...+.+ ++..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~ 51 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPT------------KADSY---RKKVVL--------------DGEE 51 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTT------------CCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCC------------cceEE---EEEEEE--------------CCEE
Confidence 357999999999999999999975431 1100110 00011 111222 1235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-----HHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-----~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++++|+|+.+.........| +.....++|+++++||+|+.
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 6899999999999999999999999999999999975443332222 22222478999999999986
No 63
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.38 E-value=3.3e-13 Score=153.50 Aligned_cols=113 Identities=26% Similarity=0.311 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+...-.+. +...|+|.+.....+.|. +..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~----------------~~~ 52 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWL----------------NYD 52 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTC----------------SSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEEC----------------Cce
Confidence 5899999999999999999943221111 123355665544444443 678
Q ss_pred EEEEcCCCCc--------cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~--------df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.||||||+. .|...+..+++.+|++|+|+|+.+|.......+++.+...++|+++++||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 9999999986 566778889999999999999999999988888888878899999999999976
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.38 E-value=1.1e-12 Score=128.03 Aligned_cols=111 Identities=19% Similarity=0.126 Sum_probs=79.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- . .+. -|+......+.+. +
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~----------~~~-------~t~~~~~~~~~~~----------------~ 50 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV--V----------TTI-------PTIGFNVETVTYK----------------N 50 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC--C----------CCC-------CCSSEEEEEEEET----------------T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC--C----------CcC-------CcCccceEEEEEC----------------C
Confidence 356899999999999999999954321 0 000 1222222233443 7
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
..+.++||||+.+|...+...++.+|++++|+|++++-..... ..+..... .++|+++++||+|+.
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 8899999999999988888889999999999999987443332 22233222 578999999999987
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=131.96 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=78.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-. .. . ....|.+.... .+.+. +.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~-----------~~t~~~~~~~~--~~~~~--------------~~ 75 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR--EN-I-----------SATLGVDFQMK--TLIVD--------------GE 75 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEE--EEEET--------------TE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC--cc-C-----------CCCccceeEEE--EEEEC--------------CE
Confidence 44679999999999999999999654211 00 0 00112222211 12221 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~---~~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|...+...++.+|++|+|+|++++...+....|. .+. ..++|+++|+||+|+.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 578999999999999999999999999999999999876555443332 222 2478999999999986
No 66
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.38 E-value=4.1e-12 Score=126.17 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=82.7
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcc
Q 003166 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (843)
Q Consensus 10 ~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (843)
.++...+....+|+++|+.|+|||||+++|.... . .+ .....|+++ ..+.+.
T Consensus 7 ~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~--~----------~~---~~~t~g~~~----~~~~~~--------- 58 (181)
T 1fzq_A 7 RKLKSAPDQEVRILLLGLDNAGKTTLLKQLASED--I----------SH---ITPTQGFNI----KSVQSQ--------- 58 (181)
T ss_dssp HHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSC--C----------EE---EEEETTEEE----EEEEET---------
T ss_pred HHHhccCCCceEEEEECCCCCCHHHHHHHHhcCC--C----------Cc---ccCcCCeEE----EEEEEC---------
Confidence 3344444566799999999999999999993221 0 00 011122221 223332
Q ss_pred ccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH----cCCCceEEEEEcCCcc
Q 003166 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+..+.++||||+.+|.......++.+|++++|+|+++.-..... ..+.... ..++|+++++||+|+.
T Consensus 59 -------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 59 -------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp -------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred -------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 68899999999999999899999999999999999976544332 2223222 2468999999999987
No 67
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.37 E-value=2.4e-12 Score=127.59 Aligned_cols=115 Identities=22% Similarity=0.263 Sum_probs=79.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+..+|+++|+.|+|||||+++|+...-. . ++.+ |+.... ....+ ++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 63 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV--D---------DYDP-------TIEDSYLKHTEI--------------DN 63 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--S---------CCCT-------TCCEEEEEEEEE--------------TT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--C---------CCCC-------CccceeEEEEEe--------------CC
Confidence 45679999999999999999999743211 1 0000 111111 11111 22
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
....++++||||+.+|.......++.+|++++|+|++++...... .+.+.....++|+++|+||+|+.
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 356788899999999998889999999999999999986443332 22233344678999999999986
No 68
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.37 E-value=2e-12 Score=129.11 Aligned_cols=112 Identities=18% Similarity=0.140 Sum_probs=79.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...-. . ++ .-|+......+.+ .+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~---------~~-------~~t~~~~~~~~~~----------------~~ 66 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN--E---------DM-------IPTVGFNMRKITK----------------GN 66 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--C---------SC-------CCCCSEEEEEEEE----------------TT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC--C---------cc-------CCCCceeEEEEEe----------------CC
Confidence 3569999999999999999999653211 0 00 0122222222333 37
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
..++||||||+.+|...+...++.+|++|+|+|+++.-..+.. ..+..+.. .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 67 VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp EEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 8999999999999998889999999999999999875443332 22333322 578999999999987
No 69
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.37 E-value=3.4e-13 Score=154.27 Aligned_cols=116 Identities=25% Similarity=0.295 Sum_probs=84.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...++|+++|++|+|||||+++|+...-.+ .+...|+|.+.....+.|.
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~---------------v~~~~g~t~~~~~~~~~~~---------------- 69 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI---------------VEDTPGVTRDRIYSSAEWL---------------- 69 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTC----------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCcceeEEEEEEEEC----------------
Confidence 346799999999999999999993321111 1123366665554444443
Q ss_pred ceEEEEEcCCC--------CccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPG--------HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPG--------h~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+++||||| +..+...+..+++.+|++|+|+|+.+|.......+++.+...++|+++|+||+|+.
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 67899999999 56677788889999999999999999999999999999888899999999999976
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.37 E-value=1.6e-12 Score=138.50 Aligned_cols=110 Identities=20% Similarity=0.270 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.... .. ....|+|++.....+.+. +..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~----------~v------~~~~g~t~~~~~~~~~~~----------------~~~ 51 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ----------RV------GNWAGVTVERKEGQFSTT----------------DHQ 51 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE----------EE------EECTTSSSEEEEEEEECS----------------SCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc----------cc------CCCCCeeEEEEEEEEEeC----------------CCc
Confidence 5899999999999999999954321 01 112366776666555553 678
Q ss_pred EEEEcCCCCccchH---------HHHH---HhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSS---------EVTA---ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~---------e~~~---~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++||||||+.+|.. .+.+ ..+.+|++|+|+|++. ......++.++...++|+++|+||+|+.
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 99999999998762 1111 2368999999999987 3344556667777899999999999986
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.37 E-value=7.1e-12 Score=124.11 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=79.3
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
...+..+|+++|+.|+|||||+++|+...- .....+ .+.......+.+.
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~-------------- 62 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD-------------- 62 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCT---------------TCCEEEEEEEEET--------------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCC---------------ccceEEEEEEEEC--------------
Confidence 345568999999999999999999975431 110011 0000001112221
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.+.|+||||+.+|.......++.+|++++|+|+.+....+.. .+.......++|+++|+||+|+.
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2356899999999999999999999999999999999975443332 22222223478999999999986
No 72
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.37 E-value=2.1e-12 Score=140.13 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcc-------------chHHHHHHhhccCeEEEEEeC-CCccchhH-HHHHHHHHcCCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVD-------------FSSEVTAALRITDGALVVVDC-IEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l~~~D~ailVvda-~~gv~~~t-~~~l~~~~~~~~p~ilviNK~D 161 (843)
...++||||||+.+ +...+..+++.+|++++|+|+ ..+...+. ..+++.+...+.|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 56899999999864 566788899999999999997 56666454 4777787778899999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 210 l~ 211 (315)
T 1jwy_B 210 LM 211 (315)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.37 E-value=1e-12 Score=133.00 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=80.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|+........ ...++.+.....+.+ ++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~--------------~~ 54 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY----------------KATIGADFLTKEVMV--------------DD 54 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC----------------CCCCSEEEEEEEEES--------------SS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCcccceEEEEEEEE--------------CC
Confidence 456789999999999999999999654321100 011122222222222 22
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc-------CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~-------~~~p~ilviNK~D~~ 163 (843)
....+.||||||+.+|.......++.+|++|+|+|++++........|.. +.. .++|+++++||+|+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 35789999999999998888888899999999999998655444333322 111 468999999999987
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.37 E-value=1.4e-12 Score=128.24 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=80.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
++.+..+|+++|+.|+|||||+++|+...-... ....++++.....+.+.
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------------- 59 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----------------YQATIGIDFLSKTMYLE-------------- 59 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS----------------CCCCCSEEEEEEEEEET--------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeeEEEEEEEEEC--------------
Confidence 334456899999999999999999975321110 01112222222222232
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHH---HcCCCceEEEEEcCCcc
Q 003166 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~---~~~~~p~ilviNK~D~~ 163 (843)
+....+.|+||||+.+|...+...++.+|++++|+|+++.........| ..+ ...++|+++++||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 2356899999999999999889999999999999999875443332222 222 23478899999999986
No 75
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.37 E-value=3e-12 Score=126.01 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=80.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-. .+....++++.....+.+. ++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~-------------~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFG----------------KQYKQTIGLDFFLRRITLP-------------GNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTT----------------HHHHHTTTSSEEEEEEEET-------------TTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCC----------------CCCCCceeEEEEEEEEEeC-------------CCC
Confidence 34568999999999999999999653211 0111111222222233332 112
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc-----CCCc-eEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~-----~~~p-~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|++++...+....| ..+.. .+.| +++++||+|+.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 47899999999999998889999999999999999986554443333 22222 2667 67899999987
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.37 E-value=3.4e-12 Score=128.22 Aligned_cols=66 Identities=21% Similarity=0.266 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH-cCCCceEEEEEcCCc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL-GERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~-~~~~p~ilviNK~D~ 162 (843)
...+.||||||+.+|...+...++.+|++|+|+|+.++...+....| ..+. ..+.|+++|+||+|.
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 37899999999999999999999999999999999987655554333 3332 356889999999993
No 77
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.36 E-value=1.6e-12 Score=128.42 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=80.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.+. +.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 59 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVE----------------FQESTIGAAFFSQTLAVN--------------DA 59 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTT----------------TSCCCSCCSEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC----------------cCCCCceeEEEEEEEEEC--------------CE
Confidence 445699999999999999999996542111 011111211111222222 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++|+|+|++++...+.. ..+..+.. .++|+++++||+|+.
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 57899999999999999899999999999999999986654443 33333333 367899999999986
No 78
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.36 E-value=5.3e-12 Score=127.05 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=78.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
..+..+|+++|..|+|||||++++..... .. ...+.+.........+. ++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~-------------~~ 66 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS--PN---------------ETLFLESTNKIYKDDIS-------------NS 66 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC--GG---------------GGGGCCCCCSCEEEEEC-------------CT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC--Cc---------------ceeeeccccceeeeecc-------------CC
Confidence 34566999999999999999998743211 00 11112222222222221 12
Q ss_pred CceEEEEEcCCCCccchHHH---HHHhhccCeEEEEEeCCCccchhHHHHHHHHH-----cCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~---~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~-----~~~~p~ilviNK~D~~ 163 (843)
+...++||||||+.+|.... ...++.+|++|+|+|+++........+...+. ..++|+++|+||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 46789999999999998777 78999999999999999873233333322222 3478999999999987
No 79
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.36 E-value=2.6e-12 Score=126.66 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|.......... ..|.|.+.....+.+. +..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----------------~~~ 53 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTD---------------IAGTTRDVLREHIHID----------------GMP 53 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------STTCCCSCEEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeC---------------CCCceeceeeEEEEEC----------------CeE
Confidence 479999999999999999996543211111 1123333222333443 567
Q ss_pred EEEEcCCCCccchH--------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc---CCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~--------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
+.++||||+.++.. .+...++.+|++++|+|++++........+..+.. .++|+++|+||+|+.
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADIT 128 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHH
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCC
Confidence 89999999976421 13346789999999999998776655555444433 368999999999986
No 80
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.36 E-value=1.5e-12 Score=126.77 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=79.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...-... .+...|.+.... .+.+ ++.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~--------------~~~~ 54 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEF--------------QESTIGAAFLTQ--TVCL--------------DDTT 54 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--------------CCCCSSEEEEEE--EEEE--------------TTEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceEEEEE--EEEE--------------CCEE
Confidence 356899999999999999999965321100 011112222221 1222 1236
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
..++++||||+.+|.......++.+|++++|+|++++........| ..+.. .++|+++++||+|+.
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 7899999999999999999999999999999999986554443322 33322 367888999999986
No 81
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=2.1e-12 Score=125.68 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+...-.... ...-|.+... ..+.+. +....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~~~~~~~~~--~~~~~~--------------~~~~~ 53 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK--------------EPTIGAAFLT--QRVTIN--------------EHTVK 53 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCSSEEEEE--EEEEET--------------TEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEE--EEEEEC--------------CEEEE
Confidence 58999999999999999999654311000 0011112211 122221 23568
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|+++.........| ..+. ..++|+++++||+|+.
T Consensus 54 ~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 54 FEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 99999999999999999999999999999999986554443333 2222 2477889999999987
No 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=3e-12 Score=127.56 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=76.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-. ++ .. |+......+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~------------~~---~~----t~~~~~~~~~~~---------------- 58 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV------------HT---SP----TIGSNVEEIVIN---------------- 58 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE------------EE---EC----CSCSSCEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC------------cC---cC----CCccceEEEEEC----------------
Confidence 44568999999999999999999543211 00 01 111112233343
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+..+.|+||||+.+|.......++.+|++|+|+|++++-..... ..+..... .+.|+++|+||+|+.
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 68999999999999988888899999999999999987543332 23333332 578999999999987
No 83
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.36 E-value=1.6e-12 Score=131.38 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=80.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-... + ....|.+.... .+.+ ++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------~---~~t~~~~~~~~--~~~~--------------~~~~ 56 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPA-----------F---VSTVGIDFKVK--TIYR--------------NDKR 56 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSC-----------C---CCCCSEEEEEE--EEEE--------------TTEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------c---CCccceeEEEE--EEEE--------------CCeE
Confidence 467999999999999999999954321100 0 00112222211 1222 1236
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|...+...++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+.
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 7899999999999999999999999999999999986554443333 33332 478999999999986
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.35 E-value=3.5e-12 Score=128.76 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|.... +..+. -|+......+.+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~------------~~~~~-------~t~~~~~~~~~~~---------------- 67 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDR------------LGQHV-------PTLHPTSEELTIA---------------- 67 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEET----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC------------CCccC-------CCCCceeEEEEEC----------------
Confidence 445689999999999999999993211 11111 1222222334443
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHH----cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+..++++||||+.+|...+...++.+|++++|+|+++.-...... .+.... ..++|+++++||+|+.
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 589999999999998887778899999999999999865443322 222222 2578999999999987
No 85
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=2.5e-12 Score=135.69 Aligned_cols=112 Identities=21% Similarity=0.341 Sum_probs=82.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|++|+|||||+++|....- .. ....|+|+......+.+. +
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~----------~~------~~~pg~tv~~~~~~~~~~----------------~ 51 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ----------YV------ANWPGVTVEKKEGVFTYK----------------G 51 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE----------EE------EECTTSCCEEEEEEEEET----------------T
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC----------cc------cCCCCceEEEEEEEEEEC----------------C
Confidence 356899999999999999999943211 11 112377877666666553 6
Q ss_pred eEEEEEcCCCCccchH-----HH-HHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSS-----EV-TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~-----e~-~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|.. .+ ...+ ..+|++++|+|++... .....+.++...++|+++++||+|+.
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 8999999999988753 12 2333 4799999999998742 33446677778899999999999986
No 86
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.35 E-value=6.2e-12 Score=122.10 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=77.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+|+++|+.|+|||||+++|+...- ...... |+.... ..+.+ ++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~~ 50 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDP----------------TIEDSYRKQVEV--------------DCQQ 50 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCC----------------CSEEEEEEEEES--------------SSCE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCC----------------CccceEEEEEEE--------------CCEE
Confidence 35899999999999999999965321 110000 111110 11111 2346
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++++|+|+++....... .+.+.....++|+++++||+|+.
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1c1y_A 51 CMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121 (167)
T ss_dssp EEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence 7899999999999999999999999999999999875433322 22222223578999999999986
No 87
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.35 E-value=6.4e-12 Score=127.11 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...- .. +....++.+.....+.+. +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~--------------~~ 76 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF--SE--------------RQGSTIGVDFTMKTLEIQ--------------GK 76 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEET--------------TE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC--CC--------------CCCCCcceEEEEEEEEEC--------------CE
Confidence 3467999999999999999999954321 00 000011111112222232 22
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 47899999999999999999999999999999999876544333222 33322 568899999999987
No 88
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.35 E-value=5.7e-12 Score=122.08 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=77.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCCCc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+|+++|+.|+|||||+++|+...-.... .. |+. .....+.+ ++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~----------------~~~~~~~~~~~~--------------~~~~ 50 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKY--DP----------------TIEDFYRKEIEV--------------DSSP 50 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CT----------------TCCEEEEEEEEE--------------TTEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccC--CC----------------CcceeEEEEEEE--------------CCEE
Confidence 358999999999999999999654311000 00 110 00111222 1235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++++|+|+.+....+.. .+++.....++|+++++||+|+.
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 6799999999999999999999999999999999975443322 22222223578999999999986
No 89
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.8e-12 Score=126.47 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.... ....+++......+.+ ++.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~t~~~~~~~~~~~~--------------~~~ 58 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---------------FISTVGIDFRNKVLDV--------------DGV 58 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC---------------CCCCCSCEEEEEEEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC---------------cCCceeeEEEEEEEEE--------------CCE
Confidence 44579999999999999999999654321110 0111222211112222 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...++++||||+.+|...+...++.+|++++|+|++++........| ..+. ..++|+++++||+|+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 56899999999999998888999999999999999986554432222 2222 2578999999999987
No 90
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2e-12 Score=131.04 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=81.9
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003166 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
|.......+|+++|+.|+|||||+++|+...-. . +....++++.....+.+.
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~--------------~~~~t~~~~~~~~~~~~~------------ 71 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFP--P--------------GQGATIGVDFMIKTVEIN------------ 71 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCC--T--------------TCCCCCSEEEEEEEEEET------------
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCC--C--------------CCCCccceeEEEEEEEEC------------
Confidence 344455789999999999999999999653211 0 000111222222223332
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
+....++|+||||+.+|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++|+||+|+.
T Consensus 72 --~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 72 --GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp --TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred --CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 2356899999999999999899999999999999999986544333223 2222 3467889999999986
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.35 E-value=3.3e-12 Score=127.59 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=78.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+........ ...|+......+.+. +
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~t~~~~~~~~~~~----------------~ 66 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-----------------ILPTIGFSIEKFKSS----------------S 66 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-----------------CCCCSSEEEEEEECS----------------S
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------cCCccceeEEEEEEC----------------C
Confidence 3568999999999999999999433211100 011222222233332 6
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHH-Hc-----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~-~~-----~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++|+|+|++++...... ..+..+ .. .++|+++|+||+|+.
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 7899999999999998888899999999999999986433332 222332 22 478999999999987
No 92
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.34 E-value=2.3e-12 Score=129.08 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+........ ....|.+.... .+.. ++.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~~ 72 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS--------------RTTIGVEFSTR--TVML--------------GTA 72 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC--------------CCCSSEEEEEE--EEEE--------------TTE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCccceeEEEE--EEEE--------------CCE
Confidence 44679999999999999999999764321110 00112222111 1111 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++++||+|+.
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 67899999999999998899999999999999999986554333223 33332 367899999999987
No 93
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.34 E-value=3.5e-12 Score=127.09 Aligned_cols=126 Identities=18% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+...-. .. .. ..++.... ...+.+.... -.....+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~~-------------~t~~~~~~~~~~~~~~~~~-----~~~~~~~ 67 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFN--SK-FI-------------TTVGIDFREKRVVYRANGP-----DGAVGRG 67 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC--CS-CC-------------CCCSEEEEEEEEEECTTSC-----CCSSCCC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCC--cC-cc-------------cccceeeeeEEEEEecCCc-----ccccccC
Confidence 44679999999999999999999653211 00 00 00111111 0111111000 0000011
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc----CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~----~~~p~ilviNK~D~~ 163 (843)
....++|+||||+.+|...+...++.+|++|+|+|+.++...+....| ..+.. .++|+++|+||+|+.
T Consensus 68 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred cEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 256899999999999999999999999999999999986655443322 32222 578999999999986
No 94
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.34 E-value=2.5e-12 Score=128.45 Aligned_cols=117 Identities=23% Similarity=0.224 Sum_probs=78.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-... ....++.+.....+.+. +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 67 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR----------------TEATIGVDFRERAVDID--------------GE 67 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS----------------CCCCCSCCEEEEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCCcceEEEEEEEEEC--------------CE
Confidence 4567999999999999999999965321100 00111111111222222 23
Q ss_pred ceEEEEEcCCCCccch-HHHHHHhhccCeEEEEEeCCCccchhHHHHH-H----HHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVL-R----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~-~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~----~~~~~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|. ......++.+|++|+|+|+++........-| . .+...++|+++++||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5789999999999988 6677889999999999999975443332222 2 2224578999999999986
No 95
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.34 E-value=1.6e-12 Score=129.88 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=80.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.. +++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~--------------~~~~ 70 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAF--------------VSTVGIDFKVK--TVYR--------------HDKR 70 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCCCEEEEE--EEEE--------------TTEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCc--------------CCceeEEEEEE--EEEE--------------CCeE
Confidence 4679999999999999999999654311100 01112222222 1222 1236
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHHc---CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+|.......++.+|++|+|+|++++....... .+..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp EEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 78999999999999888888999999999999998765444332 2333333 378999999999986
No 96
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.34 E-value=1.9e-12 Score=125.83 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...- ... . ...++.+.....+.+. +.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~-~-------------~~t~~~~~~~~~~~~~--------------~~ 52 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIF--TKD-Y-------------KKTIGVDFLERQIQVN--------------DE 52 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCC--CCC-S-------------SCCCSSSEEEEEEEET--------------TE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCC--CCC-C-------------CCceEEEEEEEEEEEC--------------CE
Confidence 3456899999999999999999965321 100 0 0011111111222221 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc--CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++++|+|+++.........| ..+.. .+.|+++++||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence 56899999999999988888899999999999999986543333222 22222 478999999999987
No 97
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.34 E-value=9.6e-13 Score=130.43 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=59.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-. .+...+++.+.....+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~--------------~~ 55 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFN----------------STFISTIGIDFKIRTIELD--------------GK 55 (183)
T ss_dssp SEEEEEEEECCCCC--------------------------------CHHHHHCEEEEEEEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC----------------CCCCCcccceeEEEEEEEC--------------CE
Confidence 44679999999999999999999532110 0111222322222233332 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++|+|+|+++........-| ..+.. .++|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 57899999999999988888889999999999999986543333222 33332 368999999999986
No 98
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.34 E-value=1.2e-11 Score=131.21 Aligned_cols=116 Identities=15% Similarity=0.138 Sum_probs=75.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-..... ..+.|.......+.+ +
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~----------------~ 85 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP---------------FQSEGPRPVMVSRSR----------------A 85 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCSSCEEEEEEE----------------T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeeEEEEEee----------------C
Confidence 456799999999999999999997543211111 122333333333333 2
Q ss_pred ceEEEEEcCCCCccch---HHHHHHh------hccCeEEEEEeCCC-ccchhHHHHHHHHHcC-C----CceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFS---SEVTAAL------RITDGALVVVDCIE-GVCVQTETVLRQALGE-R----IRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~---~e~~~~l------~~~D~ailVvda~~-gv~~~t~~~l~~~~~~-~----~p~ilviNK~D 161 (843)
+..++||||||+.+|. ......+ +.+|++++|+|... .........++.+... + +|+++++||+|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D 165 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ 165 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence 7789999999998764 2333332 36999999988765 3444444555544322 2 58999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 166 l~ 167 (270)
T 1h65_A 166 FS 167 (270)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 99
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.34 E-value=1.5e-12 Score=126.82 Aligned_cols=115 Identities=20% Similarity=0.155 Sum_probs=78.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.. +....++.+.....+.+ ++...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~--------------~~~~~ 52 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDI--------------NGKKV 52 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-----------------------CCEEEEEEES--------------SSCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEE--------------CCEEE
Confidence 5689999999999999999996532110 00111122221222222 22357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|...+...++.+|++++|+|++++........| ..+.. .++|+++++||+|+.
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 899999999999988888899999999999999976544333222 22222 478999999999985
No 100
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=2.4e-12 Score=129.03 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-... .....|.+..... +.+ ++.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~~--~~~--------------~~~ 70 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN--------------ISPTIGASFMTKT--VPC--------------GNE 70 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT--------------CCCCSSEEEEEEE--EEC--------------SSS
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC--------------cCCCcceeEEEEE--EEe--------------CCE
Confidence 3456999999999999999999965431100 0011122222111 111 224
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 67899999999999999899999999999999999986654443333 22322 378899999999986
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.34 E-value=2.5e-12 Score=127.86 Aligned_cols=112 Identities=19% Similarity=0.172 Sum_probs=79.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... .. ++.+ |+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------~~~~-------t~~~~~~~~~~~---------------- 60 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------TISP-------TLGFNIKTLEHR---------------- 60 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------SCCC-------CSSEEEEEEEET----------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------cccc-------cCccceEEEEEC----------------
Confidence 456799999999999999999995432 10 1111 222222233333
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+..++++||||+.+|...+...++.+|++++|+|+++....... ..+..... .++|+++++||+|+.
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 78999999999999988888889999999999999986544332 23333332 468999999999987
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.34 E-value=5.5e-12 Score=126.36 Aligned_cols=112 Identities=17% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|....-. . + ..|+......+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~----------~-------~~t~~~~~~~~~~~---------------- 65 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--T----------L-------QPTWHPTSEELAIG---------------- 65 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--C----------C-------CCCCSCEEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--c----------c-------ccCCCCCeEEEEEC----------------
Confidence 34458999999999999999999653211 0 0 01222222334443
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHH----cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|++++....... .+.... ..+.|+++++||+|+.
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 689999999999998877778889999999999999875544322 223332 2578999999999987
No 103
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=5.2e-12 Score=143.70 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=83.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|+.....+....+ |+|.+.....+.+. +.
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~---------------gtT~d~~~~~i~~~----------------g~ 228 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIP---------------GTTRDPVDDEVFID----------------GR 228 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---------------------CCEEEEET----------------TE
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCC---------------CCcCCceEEEEEEC----------------CE
Confidence 468999999999999999999654432222212 34555444555554 66
Q ss_pred EEEEEcCCCCccchH------------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSS------------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~------------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.+|||||+..+.. .+..+++.+|++++|+|+.++...+...++..+...++|+++++||+|+.
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLV 305 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 899999999854322 23567889999999999999998888888888888899999999999987
No 104
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=5.6e-12 Score=126.53 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=78.7
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003166 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
|.......+|+++|+.|+|||||+++|+...-. .. +.+ ..+.+.. .....
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~---------~~~---t~~~~~~---~~~~~------------- 51 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFR--DT---------YIP---TIEDTYR---QVISC------------- 51 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCC--CT---------TSC---CCCEEEE---EEEEE-------------
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCC--Cc---------ccC---cccccee---EEEEE-------------
Confidence 343445569999999999999999999653211 00 000 0011110 00111
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc-----CCCceEEEEEcCCcc
Q 003166 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~-----~~~p~ilviNK~D~~ 163 (843)
++....+.|+||||+.+|.......++.+|++++|+|+++....... ..+..+.. .++|+++|+||+|+.
T Consensus 52 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 52 -DKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp -TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred -CCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 12356899999999999999999999999999999999875443332 23322222 367999999999987
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.33 E-value=5.3e-12 Score=126.73 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... . .++ .. |+......+.+ +
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~--~----------~~~---~~----t~~~~~~~~~~----------------~ 71 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE--I----------VTT---IP----TIGFNVETVEY----------------K 71 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC--C----------EEE---EE----ETTEEEEEEEE----------------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC--c----------ccc---CC----cCceeEEEEEE----------------C
Confidence 345689999999999999999993211 0 010 11 22222223333 2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+..++|+||||+.+|.......++.+|++++|+|++++...... ..+..... .++|+++|+||+|+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 78999999999999988888899999999999999986544332 22333322 378999999999987
No 106
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.33 E-value=2.2e-12 Score=130.77 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.+. +.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~--------------~~ 55 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN----------------DYISTIGVDFKIKTVELD--------------GK 55 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT----------------TCCCSSCCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcccceeEEEEEEEC--------------CE
Confidence 456799999999999999999996543110 001112222222223332 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|.......++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 56899999999999988888889999999999999986655543333 2222 2467899999999987
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.33 E-value=6.3e-12 Score=122.80 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=74.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|...... .+ ...|+|++.....+.+. +.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-----~~-----------~~~~~t~~~~~~~~~~~----------------~~ 50 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-----IG-----------NWPGVTVEKKEGEFEYN----------------GE 50 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-----CC----------------CCCCCEEEEEET----------------TE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-----cc-----------CCCCcceeeeEEEEEEC----------------Cc
Confidence 468999999999999999999532110 01 11234444444444443 67
Q ss_pred EEEEEcCCCCccch------HHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|. .-....++ .+|++++|+|+.+. ......+..+...++|++++.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhc
Confidence 89999999999874 12233443 79999999999862 222334445556789999999999986
No 108
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=5.1e-12 Score=123.21 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=76.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-. .. +.+ ..+.+.. ..... +....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~---------~~~---t~~~~~~---~~~~~--------------~~~~~ 51 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ES---------YIP---TVEDTYR---QVISC--------------DKSIC 51 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SS---------CCC---CSCEEEE---EEEEE--------------TTEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CC---------CCC---CccccEE---EEEEE--------------CCEEE
Confidence 358999999999999999999643210 00 000 0011110 01111 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHHc-----CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~~-----~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++++|+|+++...... ...+..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 89999999999999999999999999999999987543332 233333332 368999999999986
No 109
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.33 E-value=2e-11 Score=123.25 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...- .....+ .+.......+.+. +.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~~--------------~~ 60 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP---------------TKADSYRKKVVLD--------------GE 60 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCT---------------TCCEEEEEEEEET--------------TE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC---------------ccceEEEEEEEEC--------------CE
Confidence 4567999999999999999999975431 110011 0001111112221 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHH----HcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~----~~~~~p~ilviNK~D~~ 163 (843)
.+.+.||||||+.+|.......++.+|++++|+|+++.........| ..+ ...++|+++++||+|+.
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 56899999999999999999999999999999999975443332222 222 22478999999999987
No 110
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=2.2e-12 Score=131.14 Aligned_cols=117 Identities=21% Similarity=0.166 Sum_probs=79.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.. +....++.......+.+. +.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~ 67 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP----------------SFITTIGIDFKIKTVDIN--------------GK 67 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC----------------SSSCCCSCCEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEEEC--------------CE
Confidence 345799999999999999999996432110 011112222222223332 12
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|...+...++.+|++|+|+|+.++...+....| ..+. ..++|+++|+||+|+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 47899999999999988888899999999999999986544332222 2332 2368899999999985
No 111
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.33 E-value=3.6e-12 Score=124.15 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=79.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-... .....|.+.... .+.+. +...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~~--------------~~~~ 55 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPN--------------INPTIGASFMTK--TVQYQ--------------NELH 55 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTT--------------CCCCCSEEEEEE--EEEET--------------TEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC--------------CCCceeEEEEEE--EEEEC--------------CeEE
Confidence 46899999999999999999965431100 001112222221 12221 2357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++++|+|++++...+....| ..+. ..++|+++++||+|+.
T Consensus 56 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 56 KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 899999999999998889999999999999999987655543333 3333 3456788999999987
No 112
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.32 E-value=1e-11 Score=120.10 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCce
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|+.|+|||||+++|+..... ....+ |+... ...+.+ ++..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~----------------~~~~~~~~~~~~--------------~~~~~ 51 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDP----------------TIEDSYRKQVVI--------------DGETC 51 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCT----------------TCCEEEEEEEEE--------------TTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCC----------------ccceEEEEEEEE--------------CCEEE
Confidence 48999999999999999999754211 10011 11000 111112 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH----cCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++++|+|+.+....... ..+..+. ..++|+++++||+|+.
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 789999999999999999999999999999999875443332 2222222 2378999999999987
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.6e-12 Score=128.44 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=80.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...-.... ....|.+.... .+.+. +..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--------------~~t~~~~~~~~--~~~~~--------------~~~ 63 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPEL--------------AATIGVDFKVK--TISVD--------------GNK 63 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--------------CCCCSEEEEEE--EEEET--------------TEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccC--------------CCccceEEEEE--EEEEC--------------CeE
Confidence 4569999999999999999999654311000 01112222221 22221 236
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~----~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|.......++.+|++|+|+|+.++........| ..+.. .++|+++++||+|+.
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 7899999999999998889999999999999999986554443333 33332 367889999999985
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=8.7e-12 Score=124.02 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=78.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+.... . .+...++|++.....+.+. +
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~----------~------~~~~~~~t~~~~~~~~~~~----------------~ 53 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV----------Y------IGNWPGVTVEKKEGEFEYN----------------G 53 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE----------E------EEECTTSCCEEEEEEEEET----------------T
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc----------c------ccCCCCeeccceEEEEEeC----------------C
Confidence 457999999999999999999953210 0 1112355655544455553 6
Q ss_pred eEEEEEcCCCCccch------HHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++++||||+.+|. ......++ .+|++++|+|+.. .......+..+...+.|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 889999999999884 22333343 4999999999985 2233445556666788999999999986
No 115
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.31 E-value=6.6e-12 Score=124.67 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=75.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.... .+ .+.......+.+ ++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~---------------t~~~~~~~~~~~--------------~~~~~ 52 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY--DP---------------TIEDSYRKQVVI--------------DGETC 52 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC--CT---------------TCCEEEEEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC--CC---------------CchheEEEEEEE--------------CCcEE
Confidence 458999999999999999999754311100 11 011111111122 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HH----HHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~----~~~~~~p~ilviNK~D~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|+.+.........| .. ....++|+++++||+|+.
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 788999999999999999999999999999999986443333222 22 223478999999999987
No 116
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.31 E-value=2.8e-12 Score=128.39 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.... ....|.+.. ...+.+. ++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~--~~~~~~~--------------~~~ 69 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFG--ARMVNID--------------GKQ 69 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCSSEE--EEEEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--------------CCcccceeE--EEEEEEC--------------CEE
Confidence 4569999999999999999999654321110 001112221 1122221 235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+|.......++.+|++|+|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 139 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139 (191)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 7899999999999988888899999999999999986544443222 3332 2378899999999986
No 117
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.31 E-value=3e-12 Score=126.62 Aligned_cols=115 Identities=20% Similarity=0.182 Sum_probs=75.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- ...... ..+.+. ...+.+ ++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~------------t~~~~~---~~~~~~--------------~~~~ 53 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDP------------TIENTF---TKLITV--------------NGQE 53 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT------------TCCEEE---EEEEEE--------------TTEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCC------------CccccE---EEEEEE--------------CCEE
Confidence 356999999999999999999964331 110011 011111 111122 1235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-----HHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-----~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.++|+||||+.+|.......++.+|++++|+|+.+........ +++.....++|+++++||+|+.
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 124 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 78899999999999777778889999999999998754433322 2223234478999999999985
No 118
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.31 E-value=5.3e-12 Score=123.74 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=70.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+........ ...|.+.... .+.+. +..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------------~~~~~~~~~~--~~~~~--------------~~~ 51 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------------EQLGEDVYER--TLTVD--------------GED 51 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C---------------CCSSSSEEEE--EEEET--------------TEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc---------------CccccceeEE--EEEEC--------------CEE
Confidence 4568999999999999999999543211100 1123333222 12222 235
Q ss_pred eEEEEEcCCCCcc--chHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVD--FSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d--f~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
..+.++||||+.+ +.......++.+|++++|+|+++........ .+..+.. .++|+++++||+|+.
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~ 124 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence 6899999999988 4555566778899999999998755443332 3333333 278999999999987
No 119
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=2.1e-12 Score=129.22 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=81.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.... ....|++..... +.. ++.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~--~~~--------------~~~ 70 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF--------------VSTVGIDFKVKT--VYR--------------HEK 70 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE--------------EEEETTTEEEEE--EEE--------------TTT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc--------------CCCeeeEEEEEE--EEE--------------CCE
Confidence 34568999999999999999999764321100 001122222221 222 224
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++|+|+|+++.........| ..+.. .++|+++|+||+|+.
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 141 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 78899999999999999999999999999999999875444332223 33333 478999999999986
No 120
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.31 E-value=4.1e-12 Score=129.78 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...- .. +....++++.....+.+...... .......
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~ 82 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKF--NP--------------KFITTVGIDFREKRVVYNAQGPN----GSSGKAF 82 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCC--CC--------------EEEEEEEEEEEEEEEEEEC-----------CCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCC--Cc--------------CCCCceeEEEEEEEEEECCcccc----ccccCce
Confidence 4467999999999999999999954321 00 00001111111112222200000 0000111
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~----~~~p~ilviNK~D~~ 163 (843)
...++||||||+.+|...+...++.+|++|+|+|+++....+....|.. +.. .++|+++|+||+|+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence 5789999999999999999999999999999999998655544433332 211 467899999999986
No 121
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.31 E-value=3.9e-12 Score=126.13 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=79.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|+.|+|||||+++|+...- . .+. ...|.+. ..+.+. +
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~-------~~~------~t~~~~~----~~~~~~----------------~ 64 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV--V-------HTS------PTIGSNV----EEIVIN----------------N 64 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC--E-------EEE------CCSSSSC----EEEEET----------------T
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC--C-------ccC------CcCceee----EEEEEC----------------C
Confidence 456999999999999999999964321 0 000 1112221 233333 6
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++++|+|+++....+.. ..+..... .++|+++++||+|+.
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 135 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 135 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence 8999999999999988888889999999999999987544332 33333332 578999999999987
No 122
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.31 E-value=5e-12 Score=123.28 Aligned_cols=116 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.. . ....++.......+.+ ++..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~---------------~~~t~~~~~~~~~~~~--------------~~~~ 54 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-K---------------HITTLGASFLTKKLNI--------------GGKR 54 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-S---------------CCCCCSCEEEEEEEES--------------SSCE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-C---------------CCCccceEEEEEEEEE--------------CCEE
Confidence 45689999999999999999996543110 0 0001111111112222 2346
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHH---HcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~---~~~~~p~ilviNK~D~~ 163 (843)
..+.+|||||+.+|.......++.+|++++|+|+.++...+....| ..+ ...++|+++++||+|+.
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 7899999999999988888888999999999999986544443322 222 23578899999999987
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=1.7e-11 Score=125.21 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-.... ... .-|+.. .+ .
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~--------~~~-------~~~~~~-----~~----------------~ 53 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV--------VSQ-------EPLSAA-----DY----------------D 53 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC--------CCS-------SCEEET-----TG----------------G
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee--------eec-------CceEEE-----Ee----------------e
Confidence 45679999999999999999999654311000 000 001100 00 2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhc----cCeEEEEEeCC-C--ccchhHHHHHHHHH------cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-E--GVCVQTETVLRQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~----~D~ailVvda~-~--gv~~~t~~~l~~~~------~~~~p~ilviNK~D~~ 163 (843)
...++++||||+.+|...+...++. +|++|+|+|+. + ........+..... ..++|+++++||+|+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 5678999999999998888888877 99999999998 3 22222222222221 2578999999999987
No 124
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.30 E-value=2.7e-12 Score=131.21 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=79.7
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003166 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.......+|+++|+.|+|||||+++|+...- .. .+ ..|+........+.. .
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~------~~----------~~t~~~~~~~~~~~~-----------~ 56 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRF--EK------NY----------NATVGAVNHPVTFLD-----------D 56 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCST--TC------EE----------ETTTTEEEEEEEEEB-----------T
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCC--CC------CC----------CCccceeeEEEEEEe-----------C
Confidence 3445567999999999999999999843211 00 00 011111111122210 0
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HHHHcCCCceEEEEEcCCcc
Q 003166 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~~~~p~ilviNK~D~~ 163 (843)
.+....++||||||+.+|.......++.+|++|+|+|++++...+....| ......++|+++|+||+|+.
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 11237899999999999988888889999999999999987766554333 22334468999999999987
No 125
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=3.7e-12 Score=126.05 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=75.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+.. .. ..+ . -|+......+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~-----------~~-~~~---~----~t~~~~~~~~~~~---------------- 60 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG-----------EV-VTT---K----PTIGFNVETLSYK---------------- 60 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS-----------EE-EEE---C----SSTTCCEEEEEET----------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC-----------Cc-Ccc---C----CcCccceEEEEEC----------------
Confidence 45679999999999999999999321 11 100 0 1222222233343
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH----cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+..+.++||||+.+|...+...++.+|++++|+|++++...+.. ..+.... ..++|+++++||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 68899999999999988888889999999999999886544332 2333333 2567999999999987
No 126
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.30 E-value=8.5e-12 Score=125.07 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=79.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...- ......+ .+.+.. ..+.+ ++.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t------------~~~~~~---~~~~~--------------~~~ 69 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPT------------VFENFS---HVMKY--------------KNE 69 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCC------------SEEEEE---EEEEE--------------TTE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCe------------eeeeeE---EEEEE--------------CCE
Confidence 3456999999999999999999965431 1100110 011111 11111 223
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHH-HHH--cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
.+.++|+||||+.+|.......++.+|++|+|+|+++....... ..|. .+. ..++|+++|+||+|+.
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 56789999999999998888899999999999999986554442 3332 222 2368999999999986
No 127
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.30 E-value=2.4e-11 Score=129.37 Aligned_cols=122 Identities=16% Similarity=0.244 Sum_probs=76.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..||+++|++|+|||||+++|+......... .+ .......++++......+.+. +...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~-~~-------~~~~~~~t~~~~~~~~~~~~~--------------~~~~ 65 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY-PG-------PSHRIKKTVQVEQSKVLIKEG--------------GVQL 65 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC----------------CCE
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCC-CC-------cccccCCceEEEEEEEEEecC--------------CeEE
Confidence 4689999999999999999984432221110 00 000112333444333333222 2345
Q ss_pred EEEEEcCCCCccc-------hHHH-------HHHhhc-------------cCeEEEEEeCCC-ccchhHHHHHHHHHcCC
Q 003166 99 LINLIDSPGHVDF-------SSEV-------TAALRI-------------TDGALVVVDCIE-GVCVQTETVLRQALGER 150 (843)
Q Consensus 99 ~i~liDTPGh~df-------~~e~-------~~~l~~-------------~D~ailVvda~~-gv~~~t~~~l~~~~~~~ 150 (843)
.++||||||+.++ ..-+ ...++. +|+++++|++.. +.......+++.+.. +
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~ 144 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-K 144 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-T
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-c
Confidence 8999999999543 1111 333443 778999886654 888888888888766 8
Q ss_pred CceEEEEEcCCcc
Q 003166 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNK~D~~ 163 (843)
+|+|+|+||+|+.
T Consensus 145 ~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 145 VNIIPLIAKADTL 157 (274)
T ss_dssp SCEEEEESSGGGS
T ss_pred CCEEEEEeccCCC
Confidence 9999999999976
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.30 E-value=2.9e-12 Score=130.01 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=79.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+...-. ....+ .+.......+.+ ++.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~---------------t~~~~~~~~~~~--------------~~~ 76 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP---------------TVFDNYSANVMV--------------DGK 76 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCC---------------CSEEEEEEEEEC--------------C-C
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCC---------------eecceeEEEEEE--------------CCE
Confidence 34458999999999999999999654221 10011 011111111111 224
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
.+.++|+||||+.+|.......++.+|++++|+|++++...+... .| ..+.. .++|+++|+||+|+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 677889999999999888888999999999999999876655543 33 33333 378999999999987
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.29 E-value=6.2e-12 Score=130.95 Aligned_cols=117 Identities=19% Similarity=0.201 Sum_probs=73.9
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....++|+++|+.|+|||||+++|+....... + ....++|.......+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~----~----------~~~~~~t~~~~~~~~~~~--------------- 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHS----G----------TAAKSITKKCEKRSSSWK--------------- 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEET---------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCcc----C----------CCCCceeeeEEEEEEEeC---------------
Confidence 35578999999999999999999965432111 1 112245555555555554
Q ss_pred CceEEEEEcCCCCccc-----------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH-----cCCCceEEEEEc
Q 003166 96 NEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNK 159 (843)
Q Consensus 96 ~~~~i~liDTPGh~df-----------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~-----~~~~p~ilviNK 159 (843)
+..++||||||+.+. ...+..+.+.+|++|+|+|+... .......+..+. ....|+++|+||
T Consensus 77 -~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 77 -ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp -TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred -CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 679999999997653 22333344567999999999753 333333333322 234589999999
Q ss_pred CCcc
Q 003166 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|+.
T Consensus 155 ~D~~ 158 (239)
T 3lxx_A 155 KDDL 158 (239)
T ss_dssp GGGC
T ss_pred CccC
Confidence 9987
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.29 E-value=6.5e-12 Score=135.98 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=82.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|+........ ...|.|+......+.+. ++..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~---------------~~~~~Ti~~~~~~~~~~---------------~~~~ 53 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDT---------------RRLGATIDVEHSHLRFL---------------GNMT 53 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGG---------------GGCCCCCSEEEEEEEET---------------TTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc---------------cCcCCccceEEEEEEeC---------------CceE
Confidence 58999999999999999998554222211 12234555544444442 2689
Q ss_pred EEEEcCCCCccc-----hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH----HH--cCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDF-----SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df-----~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~----~~--~~~~p~ilviNK~D~~ 163 (843)
++||||||+.+| .......++.+|++|+|+|+++....+....|.. +. ..++|+++++||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~ 128 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV 128 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence 999999999998 4456667789999999999998766555444322 21 2378999999999987
No 131
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.29 E-value=4.7e-12 Score=139.10 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.++||||||+.++...+ .+.+|++++|+|+..+...+.... ...++|.++|+||+|+.
T Consensus 147 ~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDDGD 207 (341)
T ss_dssp TTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCCTT
T ss_pred cCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCCCC
Confidence 36789999999999876553 589999999999987654332211 11257899999999987
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.29 E-value=4.2e-12 Score=130.31 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=82.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-.. .+ ....|.+.......+ +..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~--------~~------~~t~~~~~~~~~~~~----------------~~~ 62 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEK--------KY------VATLGVEVHPLVFHT----------------NRG 62 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTC--------EE------ETTTTEEEEEEEEEE----------------TTE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC--------CC------CCccceeEEEEEEEE----------------CCE
Confidence 445699999999999999999965332100 00 011233333222222 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH-Hc--CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-LG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~-~~--~~~p~ilviNK~D~~ 163 (843)
...++||||||+.+|.......++.+|++|+|+|++++...+....|... .. .++|+++|+||+|+.
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSS
T ss_pred EEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccc
Confidence 67899999999999988888899999999999999987665554444322 22 378999999999987
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.29 E-value=4.3e-12 Score=144.95 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. ++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~---------------~~gtT~d~~~~~i~~~----------------g~~ 282 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSH---------------MPGTTRDYIEECFIHD----------------KTM 282 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCceEEEEEEEEEEC----------------CeE
Confidence 369999999999999999995543222221 1244555444445553 788
Q ss_pred EEEEcCCCCccchHHH--------HHHhhccCeEEEEEeCCCccch----hHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCV----QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~--------~~~l~~~D~ailVvda~~gv~~----~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++||||||+.++...+ ...++.+|++++|+|++++... ....++..+. ++|+++|+||+|+.
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRA 356 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSC
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCC
Confidence 9999999998876543 3356889999999999998877 3444444332 78999999999998
No 134
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.28 E-value=3.5e-12 Score=128.83 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+....... ....++.......+.+. +.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~ 72 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD----------------SNHTIGVEFGSRVVNVG--------------GK 72 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC----------------------------CCEEEEEEEET--------------TE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc----------------CCCcccceeEEEEEEEC--------------Ce
Confidence 4467999999999999999999954321100 00111211111222221 22
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|...+...++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence 47899999999998887788899999999999999986554443333 2222 2478899999999986
No 135
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.28 E-value=2.5e-12 Score=128.38 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=78.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+... . .++ .. |+......+.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~--~----------~~~---~~----t~~~~~~~~~~~---------------- 64 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGD--V----------VTT---VP----TVGVNLETLQYK---------------- 64 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSC--C----------EEE---CS----STTCCEEEEEET----------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCC--C----------CCc---CC----CCceEEEEEEEC----------------
Confidence 345689999999999999999993211 0 111 11 221222233333
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|++++-..... ..+..... .++|+++++||+|+.
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 136 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLP 136 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCc
Confidence 78999999999999887777788999999999999986443332 22333322 378999999999987
No 136
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.28 E-value=1.4e-11 Score=122.96 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=68.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...- .....+ .+.......+.+ ++..+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~~~ 69 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDP---------------TIEDSYRKQVVI--------------DGETC 69 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCT---------------TCCEEEEEEEEE--------------TTEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCC---------------ccceEEEEEEEE--------------CCEEE
Confidence 45899999999999999999975421 110011 000000111222 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH----cCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~----~~~~p~ilviNK~D~~ 163 (843)
.+.||||||+.+|.......++.+|++++|+|+.+.........|. .+. ..++|+++++||+|+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 139 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP 139 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence 7999999999999998899999999999999999865544433332 222 2478999999999987
No 137
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.28 E-value=9.9e-12 Score=121.13 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=68.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.+|+++|+.|+|||||+++|+......... ...+.......+.+ ++...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~--------------~~~~~ 51 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE----------------MENSEDTYERRIMV--------------DKEEV 51 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC----------------------------CEEEEEEEE--------------TTEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc----------------CCCcCCeeeEEEEE--------------CCeEE
Confidence 4689999999999999999995432211110 00111111112222 22367
Q ss_pred EEEEEcCCCCccchH-HHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHHc----CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.. .....++.+|++++|+|+++........ .+..+.. .++|+++++||+|+.
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence 899999999999876 4455678899999999998854333322 2222222 378999999999986
No 138
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.27 E-value=6.8e-12 Score=121.94 Aligned_cols=113 Identities=15% Similarity=0.091 Sum_probs=61.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+....... ....|.+.. ..+.+ ++...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~---------------~~~~~~~~~---~~~~~--------------~~~~~ 49 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE---------------AEAAGHTYD---RSIVV--------------DGEEA 49 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE---EEEEE--------------TTEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC---------------CCccccceE---EEEEE--------------CCEEE
Confidence 35899999999999999999932111000 001122221 11112 22367
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++++|+|+++.-..... ..+..+.. .++|+++++||+|+.
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 899999999999998888899999999999999975443332 22333332 368999999999986
No 139
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.27 E-value=7.6e-12 Score=126.36 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=77.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-.... .. |+.... ..... .++.
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~----------------t~~~~~-~~~~~------------~~~~ 70 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY--DP----------------TVENTY-SKIVT------------LGKD 70 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC--CC----------------CSEEEE-EEEEC----------------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC--CC----------------ccceEE-EEEEE------------ECCE
Confidence 45679999999999999999999654321100 00 111111 00111 1224
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH----cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~----~~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|.......++.+|++++|+|+++....+....| ..+. ..++|+++|+||+|+.
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence 67899999999999988888899999999999999976544443333 2222 2378999999999986
No 140
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.27 E-value=8.9e-12 Score=124.61 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=79.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+...-... . .. ...+++. .+ .
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~-----~~-----~~~~~~~-------~~----------------~ 89 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---V-----VS-----QEPLSAA-------DY----------------D 89 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CC----------------C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc---c-----cc-----CCCceee-------ee----------------c
Confidence 3456999999999999999999965431110 0 00 0000110 01 2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhc----cCeEEEEEeCC-CccchhH-HHHHHHHH-------cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRI----TDGALVVVDCI-EGVCVQT-ETVLRQAL-------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~----~D~ailVvda~-~gv~~~t-~~~l~~~~-------~~~~p~ilviNK~D~~ 163 (843)
...+.+|||||+.+|.......++. +|++|+|+|++ +.-.... ...+.... ..++|+++|+||+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 5678999999999887666666655 89999999998 3211111 12122221 1478999999999987
Q ss_pred cccccC-CHHHHHHHHHHHHHH
Q 003166 164 FLELQV-DGEEAYQTFQKVIEN 184 (843)
Q Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~ 184 (843)
+. ..+++.+.+.+.++.
T Consensus 170 ----~~~~~~~~~~~l~~~l~~ 187 (193)
T 2ged_A 170 ----TARPPSKIKDALESEIQK 187 (193)
T ss_dssp ----TCCCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHH
Confidence 53 455555555555444
No 141
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.27 E-value=4.2e-12 Score=125.78 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=78.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...- ......+ . +.+. ...+.+ ++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t--~----------~~~~---~~~~~~--------------~~~~~ 53 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPT--V----------FDNY---SANVMV--------------DGKPV 53 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCC--S----------CCEE---EEEEEE--------------TTEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCc--c----------ccee---EEEEEE--------------CCEEE
Confidence 45899999999999999999965321 1100000 0 0011 111122 12367
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHcC--CCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~~--~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|++++...+... .| ..+... ++|+++++||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc
Confidence 7889999999999888888889999999999999866555432 23 333332 78999999999987
No 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.27 E-value=6.4e-13 Score=134.05 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=78.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+... ...+...+++.+.....+.+. +.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~--------------~~ 80 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT----------------YTESYISTIGVDFKIRTIELD--------------GK 80 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC----------------CCCHHHHHHCCSEEEEEEEET--------------TE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC----------------CCCCcCCcccceEEEEEEEEC--------------CE
Confidence 456799999999999999999983211 111112233333333333332 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHcC---CCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE---RIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~~---~~p~ilviNK~D~~ 163 (843)
.+.++|+||||+.+|.......++.+|++|+|+|+++.........|. .+... ++|+++|+||+|+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 468999999999999888888899999999999999876555443343 33332 67899999999986
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.27 E-value=4.7e-12 Score=144.06 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=74.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+.....| +|.+.....+.+. +..
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g---------------tT~d~~~~~i~~~----------------g~~ 273 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG---------------TTRDVVESQLVVG----------------GIP 273 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT---------------CCHHHHHHEEEET----------------TEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC---------------eeEEEEEEEEEEC----------------CEE
Confidence 369999999999999999998875443332233 3333322233343 778
Q ss_pred EEEEcCCCCccchHHHHH--------HhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSSEVTA--------ALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~--------~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++||||||+.++...+.. .++.+|++++|+|++++...+...+++.+. ..|+++|+||+|+.
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~ 343 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLV 343 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSS
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCC
Confidence 999999999876544333 567899999999999998888888877764 37999999999987
No 144
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.26 E-value=7.1e-12 Score=126.63 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=59.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC--
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN-- 96 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (843)
..+|+++|+.|+|||||+++|+............ .+.++.....+.+. +.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~--------------~~~~ 71 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM--------------TSGVEVVVAPVTIP--------------DTTV 71 (208)
T ss_dssp EEEEEEC------------------------------------------------CEEEECT--------------TSSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC--------------ccceEEEEEEEEEC--------------Cccc
Confidence 4589999999999999999996441111110000 00111111222222 22
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc------CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~------~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+|.......++.+|++|+|+|++++........| ..+.. .++|+++|+||+|+.
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence 57899999999999998888889999999999999987654443333 23322 478999999999987
No 145
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5e-12 Score=130.02 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=78.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|+........ ...++.......+.+. +.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~--------------~~ 60 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS----------------KSTIGVEFATRTLEIE--------------GK 60 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC----------------------CCSEEEEEEEET--------------TE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCcccceeEEEEEEEC--------------CE
Confidence 45679999999999999999999654321110 0111111111222232 22
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|...+...++.+|++|+|+|++++...+....| ..+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 47899999999999988888889999999999999987655543333 2232 2368899999999987
No 146
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.26 E-value=1.2e-11 Score=123.88 Aligned_cols=115 Identities=18% Similarity=0.178 Sum_probs=79.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...- ......+ -+... ...+.+ ++..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~ 65 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPT------------VFDHY---AVSVTV--------------GGKQ 65 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCS------------SCCCE---EEEEES--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCc------------cccee---EEEEEE--------------CCEE
Confidence 456999999999999999999975421 1100110 01111 111222 2235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH--HHHHHHcC--CCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET--VLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~--~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+|.......++.+|++|+|+|+++....+... .+..+... ++|+++++||+|+.
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 135 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 135 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 78999999999999888888899999999999998865444432 22333333 78999999999987
No 147
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.25 E-value=1e-11 Score=141.89 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=85.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|.+|+|||||+++|+.....+....+| .|.+.....+.+. +..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g---------------TT~d~~~~~i~~~----------------g~~ 292 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG---------------TTRDVISEEIVIR----------------GIL 292 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC---------------CSSCSCCEEEEET----------------TEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC---------------eeeeeEEEEEecC----------------CeE
Confidence 489999999999999999998765433322233 3444444444453 678
Q ss_pred EEEEcCCCCc-cch--------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHV-DFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~-df~--------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.||||||+. ++. ..+...++.+|++|+|+|++++...+...+|+.+ .++|+++|+||+|+.
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~ 363 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVV 363 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 9999999998 653 3456788999999999999998887777777665 478999999999987
No 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.9e-11 Score=133.61 Aligned_cols=109 Identities=18% Similarity=0.159 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+... +... .. |+......+.+. +..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~------------~~~~---~p----T~~~~~~~~~~~----------------~~~ 210 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGE------------IVTT---IP----TIGFNVETVEYK----------------NIS 210 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSC------------CEEE---EE----ETTEEEEEEEET----------------TEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCC------------CCCc---cc----ccceEEEEEecC----------------cEE
Confidence 489999999999999999993211 0100 11 333333344443 789
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH--HHHHHHHc---CCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~--~~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
++|+||||+.+|.......++.+|++|+|+|+++....... .+...... .++|+++|+||+|+.
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~ 279 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCC
Confidence 99999999999999899999999999999999875443332 22222222 378999999999987
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.24 E-value=2.8e-11 Score=123.04 Aligned_cols=115 Identities=13% Similarity=0.068 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...- ......+ -|... ...+.+ ++..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t------------~~~~~---~~~~~~--------------~~~~ 56 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPT------------VFDNF---SANVAV--------------DGQI 56 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCS------------SCCCE---EEEEEC--------------SSCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCc------------cceeE---EEEEEE--------------CCEE
Confidence 456899999999999999999965321 1100110 01111 011112 2246
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|.......++.+|++|+|+|+++........ .| ..+.. .++|+++++||+|+.
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 78999999999999888888899999999999999865544432 23 33332 278999999999987
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=5.2e-11 Score=119.56 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+..+|+++|+.|+|||||+++|+...-.... .. |+... ...+.+ ++.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~----------------t~~~~~~~~~~~--------------~~~ 74 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY--DP----------------TLESTYRHQATI--------------DDE 74 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC--CT----------------TCCEEEEEEEEE--------------TTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc--CC----------------CCCceEEEEEEE--------------CCE
Confidence 3468999999999999999999664211000 00 11100 011122 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...+.|+||||+.+ .......++.+|++++|+|+++.-..... .+.+.....++|+++++||+|+.
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 67899999999998 67778888999999999999874332221 22222223578999999999987
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.24 E-value=1.1e-11 Score=123.09 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=78.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+...-. . ++.+ |+.... ..+.+ ++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 52 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--E---------NYVP-------TVFENYTASFEI--------------DT 52 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--S---------SCCC-------CSEEEEEEEEEC--------------SS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--C---------CCCC-------ccceeEEEEEEE--------------CC
Confidence 44568999999999999999999654211 0 0000 111000 11111 23
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHHc--CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
....+.|+||||+.+|.......++.+|++|+|+|+++....... ..| ..+.. .++|+++++||+|+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 467899999999999987777788999999999999976544433 233 22222 478999999999987
No 152
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=1.5e-11 Score=124.79 Aligned_cols=115 Identities=14% Similarity=0.061 Sum_probs=77.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+...-.... .. + -+.+.. ..+.+ ++..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~--t----------~~~~~~---~~~~~--------------~~~~ 72 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VP--T----------VFENYV---ADIEV--------------DGKQ 72 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEE---EEEEE--------------TTEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CC--c----------ccceEE---EEEEE--------------CCEE
Confidence 3569999999999999999999654321100 00 0 011111 11122 1235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-H-HHHHHHc--CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-T-VLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~-~l~~~~~--~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+.+|.......++.+|++|+|+|+++....... . .+..+.. .++|+++|+||+|+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 6899999999999988888889999999999999875443332 2 2233333 378999999999987
No 153
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.24 E-value=3e-11 Score=140.63 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=58.2
Q ss_pred eEEEEEcCCCCcc-----------chHHHHHHhhccCeEEEEEeCCC-ccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d-----------f~~e~~~~l~~~D~ailVvda~~-gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++||||||+.+ |...+..+++.+|++|+|+|+.. +...++..+++.+...+.|+++|+||+|+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGS
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 3689999999986 77788889999999999999988 677888888888877788999999999987
No 154
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.24 E-value=5.3e-11 Score=122.82 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...- ...+ ..+.|.......+.+ +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~----------~~~~------~~~~t~~~~~~~~~~----------------~ 74 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV----------DVQS------YSFTTKNLYVGHFDH----------------K 74 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE----------EEEC------C-----CEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------ccCC------CCCcceeeeeeeeec----------------C
Confidence 4567999999999999999999943211 0000 112233322222223 2
Q ss_pred ceEEEEEcCCCCccc---------hHHHHHHhhccCeEEEEEeCCCccchh---HHHHHHHHHcC--CCceEEEEEcCCc
Q 003166 97 EYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQ---TETVLRQALGE--RIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df---------~~e~~~~l~~~D~ailVvda~~gv~~~---t~~~l~~~~~~--~~p~ilviNK~D~ 162 (843)
+..+.||||||+.++ ...+....+.+|++|+|+|+++..... ....+..+... ++|+++|+||+|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl 154 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDK 154 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGG
T ss_pred CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCccc
Confidence 678999999999431 122333467889999999999875533 23444555554 7899999999998
Q ss_pred c
Q 003166 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 155 ~ 155 (228)
T 2qu8_A 155 C 155 (228)
T ss_dssp C
T ss_pred C
Confidence 7
No 155
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.24 E-value=3.9e-12 Score=125.66 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=72.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...- .....+ +..+ .... .+. .++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~--t~~~----------~~~~---~~~--------------~~~~~~ 56 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVP--TVFD----------NFSA---NVV--------------VNGATV 56 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC--C----------------------CBC---CCC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC--eeee----------eEEE---EEE--------------ECCEEE
Confidence 45899999999999999999965431 110011 0000 0000 000 112356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|+++........ .| ..+.. .++|+++++||+|+.
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 57 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp -CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 7889999999999888888899999999999998765544432 23 23322 378999999999987
No 156
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.23 E-value=1.8e-11 Score=123.66 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=77.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.... .. .-+.+.. ..+.+. +...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~------------t~~~~~~---~~~~~~--------------~~~~ 73 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VP------------TVFENYI---ADIEVD--------------GKQV 73 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CC------------SSCCCCE---EEEEET--------------TEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc--CC------------cccceEE---EEEEEC--------------CEEE
Confidence 468999999999999999999654321100 00 0011111 112221 2356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHHcC--CCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~~~--~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|+++....+.. ..| ..+... ++|+++|+||+|+.
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 899999999999988888889999999999999875443332 223 333332 78999999999987
No 157
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=124.79 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=63.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+..+|+++|+.|+|||||+++|+... ... ++.+ |+... ...+.+ ++.
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~--~~~---------~~~~-------t~~~~~~~~~~~--------------~~~ 80 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA--FPE---------SYTP-------TVFERYMVNLQV--------------KGK 80 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC------------------CC-------CCCEEEEEEEEE--------------TTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC--CCC---------CCCC-------ccceeEEEEEEE--------------CCE
Confidence 45699999999999999999995322 110 0000 11100 111122 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|.......++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+.
T Consensus 81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 568999999999999988888999999999999999765544432 23 22222 378999999999987
No 158
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.23 E-value=1.2e-11 Score=131.20 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=76.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|...... .+ + ..|+|+......+ .. +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-----v~-----~------~pg~tv~~~~~~~----------------~~-~~ 49 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-----VG-----N------WPGVTVERKSGLV----------------KK-NK 49 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-----CC-----S------SSCCCCSCEEEEC----------------TT-CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-----cc-----C------CCCCcEEEEEEEE----------------ec-CC
Confidence 468999999999999999999432110 11 1 1255665433222 11 45
Q ss_pred EEEEEcCCCCccch------HHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFS------SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+++|||||+.+|. .-....++ .+|++++|+|++.. ......+.++...++|+++++||+|+.
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHH
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhC
Confidence 79999999999885 22334444 59999999999863 223344456667899999999999986
No 159
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.22 E-value=1.6e-11 Score=123.71 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=76.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|+.|+|||||+++|+... ......+ |+. .....+.+ ++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~----------------t~~~~~~~~~~~--------------~~ 65 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIP----------------TAFDNFSAVVSV--------------DG 65 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------C----------------CSSEEEEEEEEE--------------TT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------cccceeEEEEEE--------------CC
Confidence 445689999999999999999996432 1110000 111 00111222 12
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
..+.+.|+||||+.+|.......++.+|++|+|+|+++........ .| ..+.. .++|+++|+||+|+.
T Consensus 66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 66 RPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 3567889999999999877777889999999999999865544432 23 22322 378999999999987
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.22 E-value=5.3e-11 Score=127.95 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCc-------------cchHHHHHHhhccCeEE-EEEeCCCccchhHH-HHHHHHHcCCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHV-------------DFSSEVTAALRITDGAL-VVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~-------------df~~e~~~~l~~~D~ai-lVvda~~gv~~~t~-~~l~~~~~~~~p~ilviNK~D 161 (843)
...++||||||+. .+...+..+++.+|.+| +|+|+..+...+.. .+++.+...+.|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 4689999999974 34556777888888877 69999998887774 467777677899999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 204 l~ 205 (299)
T 2aka_B 204 LM 205 (299)
T ss_dssp GS
T ss_pred cC
Confidence 87
No 161
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.21 E-value=1.1e-10 Score=116.33 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=73.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|..|+|||||+++|+...- ...... |+.... ..+.+ ++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~ 66 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDP----------------NLEDTYSSEETV--------------DH 66 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCT----------------TCCEEEEEEEEE--------------TT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCC----------------CccceeeEEEEE--------------CC
Confidence 3456899999999999999999975431 110001 111110 11111 22
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc------CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~------~~~p~ilviNK~D~~ 163 (843)
....+.|+||||+.+|.. +...++.+|++++|+|+++....+....| ..+.. .++|+++++||+|+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 140 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA 140 (187)
T ss_dssp EEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred EEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence 367899999999998865 46788999999999999975544433322 22222 478999999999986
No 162
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.21 E-value=2.2e-11 Score=123.75 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=78.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....+|+++|..|+|||||+++|+...-. . ++.+ |+.... ..+.+ ++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 73 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--E---------NYVP-------TVFENYTASFEI--------------DT 73 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--S---------SCCC-------CSEEEEEEEEES--------------SS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--C---------CcCC-------ccceeEEEEEEE--------------CC
Confidence 45679999999999999999999653211 0 0000 111110 11111 23
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHHc--CCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
....+.||||||+.+|.......++.+|++|+|+|+++....... ..| ..+.. .++|+++|+||+|+.
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 467899999999999987777788999999999999976544433 233 22322 468899999999987
No 163
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.19 E-value=4.3e-11 Score=122.30 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=78.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+++|+...-.... ..+ -+.+. ...+.. ++..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~--~~t------------~~~~~---~~~~~~--------------~~~~ 74 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETY--VPT------------VFENY---TACLET--------------EEQR 74 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCC------------SEEEE---EEEEEC----------------CE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCc--CCe------------eeeeE---EEEEEE--------------CCEE
Confidence 3468999999999999999999654311100 000 01111 011111 2246
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHH-HHHHc--CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
..+.||||||+.+|.......++.+|++|+|+|+++...... ...| ..+.. .++|+++|+||+|+.
T Consensus 75 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred EEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 789999999999998888888999999999999998665544 2333 33332 378999999999987
No 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.18 E-value=1.1e-10 Score=116.16 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|+...-. . ++.+ |.......+.+. +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~---------~~~~-------t~~~~~~~~~~~--------------~~ 65 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--Q---------EESP-------EGGRFKKEIVVD--------------GQ 65 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--C---------CCCT-------TCEEEEEEEEET--------------TE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--C---------CcCC-------CcceEEEEEEEC--------------CE
Confidence 44568999999999999999999653211 0 0001 100001122222 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~----~~~p~ilviNK~D~~ 163 (843)
...+.||||||+.+|. .++.+|++++|+|+++....+....| ..+.. .++|++++.||+|+.
T Consensus 66 ~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132 (184)
T ss_dssp EEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB
T ss_pred EEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 5678999999999987 77889999999999987665553333 34433 367899999999984
No 165
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.17 E-value=2.5e-10 Score=112.32 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|..|+|||||+++|+...-.. +.+ .-|.+. ...+.+ ++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------~~~---t~~~~~---~~~~~~--------------~~~~ 53 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV------------LEK---TESEQY---KKEMLV--------------DGQT 53 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC------------CSS---CSSSEE---EEEEEE--------------TTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC------------cCC---CcceeE---EEEEEE--------------CCEE
Confidence 34689999999999999999996532110 000 001111 111122 1235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH----HHHc---CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~----~~~~---~~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+ ...++.+|++|+|+|+++.........|. .... .++|++++.||+|+.
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 6899999999988 35678899999999999866555544432 2222 367899999999984
No 166
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.78 E-value=3e-12 Score=129.62 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=81.4
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhh
Q 003166 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 8 ~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.|.+.+.. .+..+|+++|+.|+|||||+++|+... ....... .+.......+.+
T Consensus 20 ~m~~~~~~-~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~---------------t~~~~~~~~~~~-------- 73 (204)
T 3th5_A 20 HMENLYFQ-GQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIP---------------TVFDNYSANVMV-------- 73 (204)
Confidence 34444333 344589999999999999999995322 1110000 000000001111
Q ss_pred ccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHcC--CCceEEEEEcCCcc
Q 003166 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~~--~~p~ilviNK~D~~ 163 (843)
++....++||||||+.+|.......++.+|++|+|+|++++....... .| ..+... ++|+++|+||+|+.
T Consensus 74 ------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 74 ------DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 123567889999999999988888999999999999999876555432 33 333333 78999999999987
No 167
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.16 E-value=1.5e-10 Score=116.46 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|......... ..+++.+.....+.+. +.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--------------~~ 70 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH----------------EPENPEDTYERRIMVD--------------KE 70 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG----------------TTTSCTTEEEEEEEET--------------TE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC----------------CCCcccceEEEEEEEC--------------CE
Confidence 45679999999999999999999322211110 0111221111222222 23
Q ss_pred ceEEEEEcCCCCccchH-HHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~----~~~p~ilviNK~D~~ 163 (843)
...+.++||||+.+|.. .....++.+|++|+|+|+++........-| ..+.. .++|++++.||+|+.
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 56889999999998865 445667899999999999875443332222 22222 478999999999986
No 168
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.14 E-value=2.6e-10 Score=116.73 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=78.0
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+.+-.+|+++|..++|||||+.+++... ... ++ . -|+.......... .++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~--f~~---------~~-----~--~Tig~d~~~k~~~------------~~~ 59 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDS--FDN---------TY-----Q--ATIGIDFLSKTMY------------LED 59 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSC--CC--------------------------CEEEEEE------------CSS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCC--CCC---------Cc-----C--CccceEEEEEEEE------------ecc
Confidence 3344589999999999999999996432 111 00 0 0221111111111 123
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-H---HHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-Q---ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~---~~~~~~p~ilviNK~D~~ 163 (843)
..+.++||||+|+.+|.......++.+|++++|+|.++.-......-|. . ....++|++||.||+|+.
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 4678999999999999999999999999999999999765544433332 2 223567899999999986
No 169
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.14 E-value=2e-10 Score=114.06 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+...- . .....|+|..... +.+ + .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~--------------~~~~~~~t~~~~~--~~~-----------------~-~ 45 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV--R--------------RGKRPGVTRKIIE--IEW-----------------K-N 45 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC--S--------------SSSSTTCTTSCEE--EEE-----------------T-T
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC--c--------------cCCCCCccceeEE--Eec-----------------C-C
Confidence 5899999999999999999954321 0 1112244443222 122 1 6
Q ss_pred EEEEcCCCC-----------ccchHHHHHHhhc----cCeEEEEEeCCCcc-----------chhHHHHHHHHHcCCCce
Q 003166 100 INLIDSPGH-----------VDFSSEVTAALRI----TDGALVVVDCIEGV-----------CVQTETVLRQALGERIRP 153 (843)
Q Consensus 100 i~liDTPGh-----------~df~~e~~~~l~~----~D~ailVvda~~gv-----------~~~t~~~l~~~~~~~~p~ 153 (843)
++++||||+ ..|.......++. +++++.|+|+.... ..++..++..+...++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 899999994 4444444444443 55666666664321 112334555566678999
Q ss_pred EEEEEcCCcc
Q 003166 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNK~D~~ 163 (843)
++++||+|+.
T Consensus 126 ilv~nK~Dl~ 135 (190)
T 2cxx_A 126 IVAVNKLDKI 135 (190)
T ss_dssp EEEEECGGGC
T ss_pred EEEeehHhcc
Confidence 9999999987
No 170
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.13 E-value=1.2e-10 Score=134.72 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=81.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|.+|+|||||+++|+....... . -|+......+.+. +
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~------------~-------~T~~~~~~~~~~~----------------~ 365 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT------------I-------PTVGFNVETVTYK----------------N 365 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC------------C-------CCSSEEEEEEESS----------------S
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------C-------CccceeEEEEEeC----------------C
Confidence 356899999999999999999965431100 0 0333333333333 7
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHHc----CCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+.++|+||||+.+|...+..+++.+|++|+|+|+++....+... .+..... .++|+|+|+||+|+.
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp CEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 89999999999999988888999999999999999875544433 2222222 478999999999987
No 171
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.07 E-value=3.8e-10 Score=135.07 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcc---chHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVD---FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d---f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~~~~p~ilviNK~D~~ 163 (843)
..++||||||+.+ ....+...++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccc
Confidence 4699999999765 4556778889999999999999988887777775 4445678999999999986
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=1.5e-09 Score=119.79 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=72.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++.|+++|++|+|||||+++|..... .. +...+.|.+.....+.+. +
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~---------------~~~~~~T~d~~~~~i~~~----------------g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KV---------------DTKLFTTMSPKRYAIPIN----------------N 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEET----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cc---------------cCCcccccCCEEEEEEEC----------------C
Confidence 355699999999999999999954321 10 111233444444445553 5
Q ss_pred eEEEEEcCCCCccc--------hHHHHHHhhccCeEEEEEeCCCcc--ch-hH---HHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGV--CV-QT---ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv--~~-~t---~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.++||||+.+- ...+...++.+|++++|+|++++. .. +. ..+++.....++|+++|.||+|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 78999999997431 123445678999999999998764 22 21 222333333578999999999987
No 173
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.04 E-value=3.6e-10 Score=123.01 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=79.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|+...- .....+ .+.......+.. ++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~---------------t~~~~~~~~~~~--------------~~~ 201 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP---------------TVFDNYSANVMV--------------DGK 201 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC---------------CSEEEEEEEEEE--------------TTE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC---------------cccceeEEEEEE--------------CCE
Confidence 3456899999999999999999965321 110011 011111111112 223
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHHc--CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++++|+|++++....... .| ..+.. .++|+++++||+|+.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcc
Confidence 567789999999999888888899999999999999876554432 23 23332 278999999999987
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.01 E-value=1.1e-09 Score=121.03 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCccc-------------hHHHHHHhhccCeEEEEEeCCC-ccc-hhHHHHHHHHHcCCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVDCIE-GVC-VQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~e~~~~l~~~D~ailVvda~~-gv~-~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
...+.||||||..++ ...+..+++.+|++|+|+|+.. ... .....+++.+...+.|.++|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999999887 5667788899999999998753 222 2334555565567889999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 215 l~ 216 (360)
T 3t34_A 215 LM 216 (360)
T ss_dssp GC
T ss_pred cC
Confidence 87
No 175
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.01 E-value=3.1e-10 Score=124.19 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=75.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.+|+++|.+|+|||||+++|..... ...++ ...|.......+.+. ...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~----------~i~~~------~ftTl~p~~g~v~~~---------------~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP----------KIADY------HFTTLVPNLGMVETD---------------DGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC----------EESST------TSSCCCCCEEEEECS---------------SSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC----------ccccC------CccccCceEEEEEeC---------------CCc
Confidence 45799999999999999999833211 11111 123444443344443 236
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC---ccchhH-HHHHHHHHc-----CCCceEEEEEcCCc
Q 003166 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE---GVCVQT-ETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~---gv~~~t-~~~l~~~~~-----~~~p~ilviNK~D~ 162 (843)
.+.|+||||+.+ +.....+.+..+|++|+|+|+++ .-.... ..++..+.. .++|+++|+||+|+
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl 286 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM 286 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccC
Confidence 899999999753 45666777788999999999976 222222 333344433 36899999999998
Q ss_pred c
Q 003166 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 287 ~ 287 (342)
T 1lnz_A 287 P 287 (342)
T ss_dssp T
T ss_pred C
Confidence 7
No 176
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.00 E-value=1e-09 Score=121.06 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcc-------------chHHHHHHhhccC-eEEEEEeCCCccchhHH-HHHHHHHcCCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVD-------------FSSEVTAALRITD-GALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l~~~D-~ailVvda~~gv~~~t~-~~l~~~~~~~~p~ilviNK~D 161 (843)
...+.||||||..+ +...+..+++.++ .+++|+|+..+...+.. .+++.+...+.|.++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 46799999999743 3334555665555 55567788877777765 377777777899999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 209 l~ 210 (353)
T 2x2e_A 209 LM 210 (353)
T ss_dssp GS
T ss_pred cc
Confidence 87
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.99 E-value=1.1e-09 Score=127.80 Aligned_cols=123 Identities=14% Similarity=0.155 Sum_probs=78.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|.+|+|||||+++|....-. . ++ ....|.++. +.... ....+.-..+++
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~---------~~---~~t~g~~~~----~~~~~----~~~~v~~~~~~~ 96 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFD--P---------KE---SQTHGLNVV----TKQAP----NIKGLENDDELK 96 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEE----EEEGG----GSGGGTTCSTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCC--C---------CC---CCccceEEE----Eeccc----cccceeecCCCc
Confidence 44568999999999999999999533210 0 00 001111111 10000 000001112234
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
+..++++||||+..|.......++.+|++|+|+|++.+ ......+..+... ++|+++|+||+|+.
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~ 163 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDEN 163 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcc
Confidence 68999999999999988888888999999999999875 3334444555443 48999999999987
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.99 E-value=1.6e-09 Score=109.77 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=71.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|+.... .. ......|.|.... .+.+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~-----------~~---~~~~~~G~~~~~~--~~~~~----------------~ 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKS-----------LA---RTSKTPGRTQLIN--LFEVA----------------D 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEE--EEEEE----------------T
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-----------cc---cccCCCccceeeE--EEEec----------------C
Confidence 345899999999999999999932210 00 0011223333211 12222 2
Q ss_pred eEEEEEcCCCCccc----------hHHHHHH---hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDF----------SSEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df----------~~e~~~~---l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+. ...+... .+.+|++++|+|+..+.......+.+.+...++|.+++.||+|+.
T Consensus 73 -~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 150 (210)
T 1pui_A 73 -GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKL 150 (210)
T ss_dssp -TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred -CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCC
Confidence 5789999998642 2222222 357899999999998877666666666777889999999999976
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.98 E-value=1.1e-09 Score=110.37 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=76.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+...-.... ...+++......+.+. +...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~--------------g~~~ 54 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD--------------GKTI 54 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------------------CCCSCEEEEEEEEET--------------TEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceeEEEEEEEEC--------------CEEE
Confidence 568999999999999999999654321100 0011111112223332 2346
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+..|........+.+|++++|+|..+.........| ..+. ..+.|+++++||+|+.
T Consensus 55 ~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 123 (199)
T 2f9l_A 55 KAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 123 (199)
T ss_dssp EEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 788999999998876677777899999999999876554433233 2222 2467888999999986
No 180
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=1.7e-09 Score=110.24 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=72.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+++|+.....+..... .-|.+... ..+.+. +.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-------------~~g~d~~~--~~i~~~--------------~~ 85 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-------------VLGEDTYE--RTLMVD--------------GE 85 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----------------CCTTEEE--EEEEET--------------TE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-------------ccceeeEE--EEEEEC--------------Ce
Confidence 34578999999999999999999643322211000 00111111 112221 23
Q ss_pred ceEEEEEcCCCCccc-hHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc----CCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df-~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~----~~~p~ilviNK~D~~ 163 (843)
...+.++||+|.... ........+.+|++|+|+|.++.-......-| ..+.. .++|+++|.||+|+.
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh
Confidence 567889999998873 32233345789999999999874443333223 33332 368999999999986
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.97 E-value=6.3e-10 Score=110.54 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|+....... + ++ ...+.++.....+.+. ..+++...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~----~-----~~-----~~t~g~~~~~~~~~~~-----------~~~~~~~~ 57 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL----G-----MQ-----SATVGIDVKDWPIQIR-----------DKRKRDLV 57 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC--------------------CE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC----C-----Cc-----ceeccEEeEEeeeccc-----------cCCCCceE
Confidence 4799999999999999999943211110 0 00 0001111111111110 00123678
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-hhHHHHH-HHHH--cCCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~~t~~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|.+++.. ......| ..+. ..+.|++++.||+|+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 58 LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVS 125 (184)
T ss_dssp EEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGC
T ss_pred EEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcc
Confidence 9999999998887766777889999999999988632 2222222 2222 2368888999999987
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.96 E-value=2.9e-09 Score=117.57 Aligned_cols=115 Identities=20% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|+.... ... ...+.|.......+.+ .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~----------~~~------~~~~~t~~~~~~~~~~----------------~ 212 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP----------EIA------SYPFTTRGINVGQFED----------------G 212 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC----------EEE------CCTTCSSCEEEEEEEE----------------T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------ccC------CCCCeeeceeEEEEEe----------------c
Confidence 3457899999999999999999933210 000 0112333333233333 2
Q ss_pred ceEEEEEcCCCCccchH--------HHHHHh-hccCeEEEEEeCCCcc--chhH-HHHHHHHHc--CCCceEEEEEcCCc
Q 003166 97 EYLINLIDSPGHVDFSS--------EVTAAL-RITDGALVVVDCIEGV--CVQT-ETVLRQALG--ERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~--------e~~~~l-~~~D~ailVvda~~gv--~~~t-~~~l~~~~~--~~~p~ilviNK~D~ 162 (843)
+..+.++||||+.++.. ....++ ..+|++++|+|++.+- .... ...+..+.. .++|+++++||+|+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 67899999999876421 222233 3699999999988743 3333 233333322 27899999999998
Q ss_pred c
Q 003166 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 293 ~ 293 (357)
T 2e87_A 293 A 293 (357)
T ss_dssp C
T ss_pred C
Confidence 7
No 183
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.92 E-value=3.2e-09 Score=106.32 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=70.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|.+|+|||||+++|+.....+...... -|.+.. ...+.++ +..
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~--------------~~~ 55 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-------------LGEDTY--ERTLMVD--------------GES 55 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-------------GCTTEE--EEEEEET--------------TEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-------------cceeEE--EEEEEEC--------------CeE
Confidence 35689999999999999999997654332221000 111111 1122222 235
Q ss_pred eEEEEEcCCCCcc-chHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH----cCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d-f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~----~~~~p~ilviNK~D~~ 163 (843)
..+.++||+|... +.......++.+|++++|+|.++.-......-| ..+. ..++|++++.||+|+.
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 5778999999765 222234456789999999999875443333222 2222 2468999999999986
No 184
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=117.73 Aligned_cols=123 Identities=17% Similarity=0.247 Sum_probs=61.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+... .... + ..+....+...++++......+.+. +...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~-~~~~---~---~~~~~~~~~~~ti~~~~~~~~~~~~--------------~~~~ 95 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTD-LYPE---R---VIPGAAEKIERTVQIEASTVEIEER--------------GVKL 95 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCC-C---------------------CEEEEEEEEC------------------CEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCC-CCCC---C---cccCCCcccCCceeEEEEEEEeecC--------------Cccc
Confidence 4689999999999999999984331 1111 1 1111111222233333222222221 1245
Q ss_pred EEEEEcCCCCccchHH-------HH-------HHhhcc-------------CeEEEEEeC-CCccchhHHHHHHHHHcCC
Q 003166 99 LINLIDSPGHVDFSSE-------VT-------AALRIT-------------DGALVVVDC-IEGVCVQTETVLRQALGER 150 (843)
Q Consensus 99 ~i~liDTPGh~df~~e-------~~-------~~l~~~-------------D~ailVvda-~~gv~~~t~~~l~~~~~~~ 150 (843)
.+++|||||+.|+... +. ..++.+ |+++++|++ ..+.......+++.+ ..+
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~ 174 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNK 174 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccC
Confidence 7999999999554321 11 334333 457788876 556666555555544 567
Q ss_pred CceEEEEEcCCcc
Q 003166 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNK~D~~ 163 (843)
+|+|+|+||+|+.
T Consensus 175 ~piIlV~NK~Dl~ 187 (361)
T 2qag_A 175 VNIVPVIAKADTL 187 (361)
T ss_dssp SCEEEEEECCSSS
T ss_pred CCEEEEEECCCCC
Confidence 8999999999987
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.92 E-value=1.3e-09 Score=121.67 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=47.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe--echhhhhccccc------
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE--MTDAALKSYRGE------ 92 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~--~~~~~~~~~~~~------ 92 (843)
+|+++|++|+|||||+++|+... ......++ .|+........+. .....+...-.+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~---------------tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~ 65 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPF---------------TTIEANVGVTYAITDHPCKELGCSPNPQNYEYR 65 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCC---------------cccCCceEEEeeccCCchHHhhhhccccccccc
Confidence 69999999999999999996543 21111111 1222222111110 000000000000
Q ss_pred cCCCceEEEEEcCCCCccch-------HHHHHHhhccCeEEEEEeCCCc
Q 003166 93 RQGNEYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEG 134 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~-------~e~~~~l~~~D~ailVvda~~g 134 (843)
...+...++|+||||+.++. .....+++.+|++++|+|+.++
T Consensus 66 ~~~~~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 66 NGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp TTEEEEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcceEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 00114679999999987532 1223457899999999999885
No 186
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.91 E-value=2.3e-09 Score=115.41 Aligned_cols=110 Identities=13% Similarity=0.178 Sum_probs=72.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+.++.. +..... ...-+-|+......+ . ...++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~--~~~~~~-------------~~~~~~Tig~~~~~v--~---------------~~v~L 48 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFH--NMQPLD-------------TLYLESTSNPSLEHF--S---------------TLIDL 48 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHS--CCCSGG-------------GTTCCCCCSCCCEEE--C---------------SSSCE
T ss_pred CEEEECCCCCCHHHHHHHHHc--CCCCCc-------------cceecCeeeeeeEEE--c---------------cEEEE
Confidence 478999999999999987632 111100 001122333222221 1 24789
Q ss_pred EEEcCCCCccchH---HHHHHhhccCeEEEEEeCCCccchhHHHHHH----HHH--cCCCceEEEEEcCCcc
Q 003166 101 NLIDSPGHVDFSS---EVTAALRITDGALVVVDCIEGVCVQTETVLR----QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~---e~~~~l~~~D~ailVvda~~gv~~~t~~~l~----~~~--~~~~p~ilviNK~D~~ 163 (843)
+||||||+.+|.. .....++.++++|+|+|+++. ......-|. .+. ..++|++++.||+|+.
T Consensus 49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 9999999999964 457788999999999999986 333333332 221 2478999999999987
No 187
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.89 E-value=1.7e-09 Score=119.45 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=44.3
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.||||||...- ....+..+|++++|+|+..+...+... . ....+|.++|+||+|+.
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGE 230 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGG
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCc
Confidence 4678999999996542 333458999999999998765443321 1 12346999999999987
No 188
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4.4e-09 Score=115.90 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-+|+++|.+|+|||||+|+|......+ ... .+.|++.....+.+. +.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v-~~~---------------pftT~~~~~g~~~~~----------------~~~ 120 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEA-AEY---------------EFTTLVTVPGVIRYK----------------GAK 120 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCG-GGT---------------CSSCCCEEEEEEEET----------------TEE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcc-cCC---------------CCceeeeeeEEEEeC----------------CcE
Confidence 479999999999999999995433221 111 245666666666665 789
Q ss_pred EEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc-----CCCceEEEEEcCCcc
Q 003166 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~-----~~~p~ilviNK~D~~ 163 (843)
+.|+||||..+ ....+...++.||++++|||+.+++.. ...+...+.. ...|.++++||+|+.
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 99999999864 334578889999999999999975432 1222222222 356889999999985
No 189
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.86 E-value=5.3e-09 Score=104.63 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=76.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.|+|||||+++|....-.... ...++.......+.+. +..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~----------------~~t~~~~~~~~~i~~~--------------g~~ 77 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES----------------KSTIGVEFATRSIQVD--------------GKT 77 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC----------------CCCCSEEEEEEEEEET--------------TEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------------CCccceEEEEEEEEEC--------------CEE
Confidence 3568999999999999999999654221100 0011121112223332 224
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
..+.++||||+..|...+...++.+|++++|+|..+....+....| ..+. ..+.|+++++||+|+.
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 147 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 5677899999998887777788899999999999875443332222 2222 2467888999999986
No 190
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.84 E-value=1.1e-08 Score=121.54 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcc-------------chHHHHHHh-hccCeEEEEEeCCCccchhHH-HHHHHHHcCCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVD-------------FSSEVTAAL-RITDGALVVVDCIEGVCVQTE-TVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------------f~~e~~~~l-~~~D~ailVvda~~gv~~~t~-~~l~~~~~~~~p~ilviNK~D 161 (843)
...+.||||||... +...+..++ ..+|.+++|+||..+...+.. .+++.+...+.|.|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45799999999765 122233344 478999999999999888876 688888888999999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 229 lv 230 (772)
T 3zvr_A 229 LM 230 (772)
T ss_dssp SS
T ss_pred cC
Confidence 87
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.71 E-value=1.4e-08 Score=116.22 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=78.8
Q ss_pred HHHHHhhccc--------CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eE--eecCc-c--------ccccc
Q 003166 7 EELRRIMDFK--------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VR--MTDTR-Q--------DEAER 66 (843)
Q Consensus 7 ~~~~~~~~~~--------~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~--~~D~~-~--------~E~~r 66 (843)
+++.+++... .+.++|+++|+.|+|||||+++|.+.... .|. +- ..|.. + ...+.
T Consensus 81 ~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~-----~G~kVllVd~D~~r~aa~~qL~~~~~~~ 155 (504)
T 2j37_W 81 KELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQR-----KGWKTCLICADTFRAGAFDQLKQNATKA 155 (504)
T ss_dssp HHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEEECCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEeccccchhHHHHHHHHhhcc
Confidence 4455666531 34679999999999999999999865421 121 11 11211 1 11223
Q ss_pred cceeeeeeEEEEEeechhhh-hccccccCCCceEEEEEcCCCCcc----chHHHHHHhh--ccCeEEEEEeCCCccchhH
Q 003166 67 GITIKSTGISLYYEMTDAAL-KSYRGERQGNEYLINLIDSPGHVD----FSSEVTAALR--ITDGALVVVDCIEGVCVQT 139 (843)
Q Consensus 67 giTi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~liDTPGh~d----f~~e~~~~l~--~~D~ailVvda~~gv~~~t 139 (843)
++++.... ...+...+ ..........++.+.||||||+.. +..++....+ .+|.+++|+||..|.. .
T Consensus 156 ~i~v~~~~----~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~ 229 (504)
T 2j37_W 156 RIPFYGSY----TEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--C 229 (504)
T ss_dssp TCCEEECC----CCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--H
T ss_pred CceEEccC----CCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--H
Confidence 44332210 00000000 000000111367899999999873 4444433332 7899999999998754 2
Q ss_pred HHHHHHHHcCCCce-EEEEEcCCcc
Q 003166 140 ETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 140 ~~~l~~~~~~~~p~-ilviNK~D~~ 163 (843)
...++.... .+|+ ++++||+|..
T Consensus 230 ~~~a~~~~~-~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 230 EAQAKAFKD-KVDVASVIVTKLDGH 253 (504)
T ss_dssp HHHHHHHHH-HHCCCCEEEECTTSC
T ss_pred HHHHHHHHh-hcCceEEEEeCCccc
Confidence 233333222 2674 7999999976
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.70 E-value=7.2e-09 Score=105.91 Aligned_cols=135 Identities=15% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCc----cccc-cccceeeeeeEEEEEeechhhhhcccc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR----QDEA-ERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~----~~E~-~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.++++|+++|+.|+|||||+++|+.......+ .+. ...|.. .... ..|+++........+......+.....
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~--~~~-i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVK--IGA-MLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK 104 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSC--EEE-EECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCe--EEE-EecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH
Confidence 46789999999999999999999877432111 110 001110 1111 113321100000000000000000000
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...+..+.+|||||..+-.... -...+.+++|+|+..+... .+......+.|.++++||+|+.
T Consensus 105 --~~~~~d~iiidt~G~~~~~~~~---~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 105 --KFSDCDLLLIENVGNLICPVDF---DLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALA 167 (221)
T ss_dssp --GGTTCSEEEEEEEEBSSGGGGC---CCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGH
T ss_pred --hcCCCCEEEEeCCCCCCCCchh---ccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCC
Confidence 2235789999999952211100 0246889999999987432 2333334568999999999986
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.59 E-value=3e-08 Score=104.08 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred ccCeEEEEEeCCCc--cchhHHHHH-HHH----HcCCCceEEEEEcCCcc
Q 003166 121 ITDGALVVVDCIEG--VCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 121 ~~D~ailVvda~~g--v~~~t~~~l-~~~----~~~~~p~ilviNK~D~~ 163 (843)
.+|++|+|+|+++. -......-| ..+ ...++|+++|+||+|+.
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~ 211 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG 211 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc
Confidence 68999999999875 333332222 222 23578999999999986
No 194
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.59 E-value=1.8e-07 Score=104.64 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|+++|++|+|||||+++|..... .+.++ ...|+......+.+. ...
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~----------~i~~~------~ftTl~p~~G~V~~~---------------~~~ 205 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP----------KIAPY------PFTTLSPNLGVVEVS---------------EEE 205 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC----------EECCC------TTCSSCCEEEEEECS---------------SSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc----------cccCc------ccceecceeeEEEec---------------Ccc
Confidence 34689999999999999999932211 11111 112333333333332 136
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc-----CCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~-----~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+ +.......+..+|.++.|+|+......+....+++... ...|.++++||+|..
T Consensus 206 ~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 206 RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp EEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred eEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 789999999854 33344556778999999999972111122222222222 357999999999987
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.55 E-value=8.2e-08 Score=105.17 Aligned_cols=98 Identities=26% Similarity=0.207 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhccccccCCCce
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (843)
.+|+++|.+|+|||||+++|.... ......+ +.|+......+.+.... ..+.....+......
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p---------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYP---------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------C---------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCC---------------CceECceEEEEecCCcccceeeeeecccceeee
Confidence 379999999999999999997643 1111111 12333222222232000 000000000111135
Q ss_pred EEEEEcCCCCccchH-------HHHHHhhccCeEEEEEeCCC
Q 003166 99 LINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 99 ~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~ 133 (843)
.++|+||||..++.. .....++.+|++++|+|+.+
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999988753 35567899999999999987
No 196
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.52 E-value=1.5e-07 Score=103.28 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.|+||||..+-. ......+|.+++|+|+..|...+.. .. .-...|.++++||+|+.
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGD 225 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGG
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCC
Confidence 36789999999965322 2335789999999999876433221 11 12356889999999987
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.52 E-value=1.4e-07 Score=98.99 Aligned_cols=66 Identities=21% Similarity=0.085 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCccchHH------HHHHhhccCeEEEEEeCCCccchhHHH-H----HHHHHcCCCceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSE------VTAALRITDGALVVVDCIEGVCVQTET-V----LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e------~~~~l~~~D~ailVvda~~gv~~~t~~-~----l~~~~~~~~p~ilviNK~D~~ 163 (843)
++.+.||||||..++... +..++.. +.+|+|+|+..+....... . +......++|.++++||+|+.
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLL 184 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGC
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccc
Confidence 468999999999876432 3345556 8899999998765544422 1 122234578999999999986
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.48 E-value=8.7e-07 Score=97.58 Aligned_cols=98 Identities=20% Similarity=0.187 Sum_probs=57.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhccccccC----
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQ---- 94 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~---- 94 (843)
.+|+++|++|+|||||+++|......+.. .. +.|+........+.... ..+.......+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~-~p---------------~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~ 65 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAAN-YP---------------FATIDKNVGVVPLEDERLYALQRTFAKGERVPP 65 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSS-CC---------------GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccC-CC---------------CceeccceeeEecChHHHHHHHHHhcccccccc
Confidence 47999999999999999999765311110 01 11232222222211000 00000000000
Q ss_pred CCceEEEEEcCCCCccc-------hHHHHHHhhccCeEEEEEeCCC
Q 003166 95 GNEYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~ 133 (843)
.....+.|+||||..++ .......++.+|++++|+|+.+
T Consensus 66 ~~~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 66 VVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 12467999999999875 3456778999999999999986
No 199
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.44 E-value=1.9e-06 Score=91.03 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeec--CccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD--TRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D--~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.|++++|+.|+|||||++.|+...... .|+..+.. .......++++ +..+. ..-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~----~G~i~~~g~~i~~~~~~~~i~-------~v~q~------------~~~~ 59 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSR----KASSWNREEKIPKTVEIKAIG-------HVIEE------------GGVK 59 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------------CCCCCSCCEEE-------ESCC----------------C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC----CCccccCCcccCcceeeeeeE-------EEeec------------CCCc
Confidence 489999999999999999997654221 23222111 11111111221 11110 0012
Q ss_pred eEEEEEcCCCCccch---------HH-----HHH--------------HhhccCeEEEEEeCC-CccchhHHHHHHHHHc
Q 003166 98 YLINLIDSPGHVDFS---------SE-----VTA--------------ALRITDGALVVVDCI-EGVCVQTETVLRQALG 148 (843)
Q Consensus 98 ~~i~liDTPGh~df~---------~e-----~~~--------------~l~~~D~ailVvda~-~gv~~~t~~~l~~~~~ 148 (843)
..++++|+||..+.. .+ ... ++..++++++++|.. +|..+....+++.+..
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~ 139 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK 139 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh
Confidence 368999999975311 00 111 112258889999955 8999999888888876
Q ss_pred CCCceEEEEEcCCcc
Q 003166 149 ERIRPVLTVNKMDRC 163 (843)
Q Consensus 149 ~~~p~ilviNK~D~~ 163 (843)
. +++|+++||+|..
T Consensus 140 ~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 V-VNIIPVIAKADTM 153 (270)
T ss_dssp T-SEEEEEETTGGGS
T ss_pred c-CcEEEEEeccccC
Confidence 6 8999999999976
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=1.2e-06 Score=98.01 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=62.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+........ .|... .+. .-|+....+.+.+. ..+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~--~~~~~-~~~-------~~t~~~~~i~~v~q------------~~~~~~~ 89 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE--YPGPS-HRI-------KKTVQVEQSKVLIK------------EGGVQLL 89 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC--CCSCC-------------CCEEEEEECC------------------CEE
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC--CCCcc-cCC-------ccceeeeeEEEEEe------------cCCcccc
Confidence 46899999999999999999443211110 11000 000 00111111111111 0112347
Q ss_pred EEEEcCCCCccchH------HH--------HHH-----------hhc--cCeEEEEEeCC-CccchhHHHHHHHHHcCCC
Q 003166 100 INLIDSPGHVDFSS------EV--------TAA-----------LRI--TDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh~df~~------e~--------~~~-----------l~~--~D~ailVvda~-~gv~~~t~~~l~~~~~~~~ 151 (843)
++++||||..++.. .+ ... ++. ++++|++++++ .|..+....+++.+. .++
T Consensus 90 Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-~~v 168 (418)
T 2qag_C 90 LTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-EKV 168 (418)
T ss_dssp EEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-TTS
T ss_pred eeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-ccC
Confidence 89999999977532 11 111 122 34466666665 688887776776664 488
Q ss_pred ceEEEEEcCCcc
Q 003166 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNK~D~~ 163 (843)
|+|+|+||+|+.
T Consensus 169 ~iIlVinK~Dll 180 (418)
T 2qag_C 169 NIIPLIAKADTL 180 (418)
T ss_dssp EEEEEEESTTSS
T ss_pred cEEEEEEcccCc
Confidence 999999999976
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=5.3e-08 Score=107.79 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=70.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-++|+++|.+|+|||||+|+|+....... +..... ...|.|..... +.+ +.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~----~~~~~~------~~~gtT~~~~~--~~~-----------------~~ 212 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKG----NVITTS------YFPGTTLDMIE--IPL-----------------ES 212 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTT----CCCEEE------ECTTSSCEEEE--EEC-----------------ST
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCc----cceeec------CCCCeEEeeEE--EEe-----------------CC
Confidence 46899999999999999999987621000 000011 12244544322 112 22
Q ss_pred EEEEEcCCCCccch-------HHHHHHh---hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFS-------SEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-------~e~~~~l---~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.++||||..+.. .+....+ ...|.+++++++...........+.+....+.|+++++||+|..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 37899999976432 2233344 67899999999953221111111233345678999999999987
No 202
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.37 E-value=1.3e-06 Score=97.54 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=68.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.+.|++|+|+.|+|||||++.|+... + .|. ...... .+.+.. .+.+.+.. .+-.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~--l----~g~-~~~~~~-----~~~~~~--~i~~v~Q~------------~~l~ 94 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTK--F----EGE-PATHTQ-----PGVQLQ--SNTYDLQE------------SNVR 94 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSC--C------------CC-----SSCEEE--EEEEEEEC--------------CE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCcc--c----cCC-cCCCCC-----ccceEe--eEEEEeec------------Cccc
Confidence 35679999999999999999995542 1 111 000000 112222 12222220 0012
Q ss_pred eEEEEEcCCCCccch--------------HHHHHHhh-------------cc--C-eEEEEEeCCCccchhHHHHHHHHH
Q 003166 98 YLINLIDSPGHVDFS--------------SEVTAALR-------------IT--D-GALVVVDCIEGVCVQTETVLRQAL 147 (843)
Q Consensus 98 ~~i~liDTPGh~df~--------------~e~~~~l~-------------~~--D-~ailVvda~~gv~~~t~~~l~~~~ 147 (843)
..++++|+||..+.. ......+. .+ | ++++|+|+..|.......+++.+.
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~ 174 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD 174 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 368999999986531 11111111 11 2 466788999999988888877764
Q ss_pred cCCCceEEEEEcCCcc
Q 003166 148 GERIRPVLTVNKMDRC 163 (843)
Q Consensus 148 ~~~~p~ilviNK~D~~ 163 (843)
.++|+|+++||+|..
T Consensus 175 -~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 175 -SKVNIIPIIAKADAI 189 (427)
T ss_dssp -SCSEEEEEESCGGGS
T ss_pred -hCCCEEEEEcchhcc
Confidence 788999999999966
No 203
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.32 E-value=1.3e-07 Score=104.60 Aligned_cols=116 Identities=12% Similarity=0.103 Sum_probs=67.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCcc-ccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-++|+++|.+|+|||||+|+|+...... ... .. .-...|.|...... .+ +
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~----~~------~~~~~gtT~~~~~~--~~-----------------~ 210 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENV----IT------TSHFPGTTLDLIDI--PL-----------------D 210 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSC----CE------EECCC----CEEEE--ES-----------------S
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccc----ee------cCCCCCeecceEEE--Ee-----------------c
Confidence 3689999999999999999998764211 000 00 01122444433221 12 1
Q ss_pred eEEEEEcCCCCccc-------hHHHHHH---hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 98 YLINLIDSPGHVDF-------SSEVTAA---LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df-------~~e~~~~---l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.++||||..+. ..+.... ....+.+++++|+...........+.++...++|+++++||+|..
T Consensus 211 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 211 EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 23889999997643 2233333 357889999999853322111111233345678999999999987
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.25 E-value=5.3e-06 Score=89.05 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=61.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+...-... .| ..... .+ ... |+......+..+ ..+....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g-~~--~~~--t~~~~~~~~~~q------------~~~~~~~ 77 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAA-EK--IER--TVQIEASTVEIE------------ERGVKLR 77 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------------------------CEEEEC---------------CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCC---CC-cccCC-cc--cCC--cceEeeEEEEec------------CCCcccC
Confidence 5889999999999999999853211111 11 00000 00 000 111111111121 0112467
Q ss_pred EEEEcCCCC-------ccchHHHH-------HHhhcc-------------CeEEEEEeCCC-ccchhHHHHHHHHHcCCC
Q 003166 100 INLIDSPGH-------VDFSSEVT-------AALRIT-------------DGALVVVDCIE-GVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh-------~df~~e~~-------~~l~~~-------------D~ailVvda~~-gv~~~t~~~l~~~~~~~~ 151 (843)
++++||||. ..|...+. ..++.+ ++++++++++. |..+....+++.+. .++
T Consensus 78 ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~ 156 (301)
T 2qnr_A 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKV 156 (301)
T ss_dssp EEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTS
T ss_pred cchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcC
Confidence 899999998 33332222 333322 33666666554 57777766666653 467
Q ss_pred ceEEEEEcCCcc
Q 003166 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNK~D~~ 163 (843)
++++++||.|+.
T Consensus 157 ~iilV~~K~Dl~ 168 (301)
T 2qnr_A 157 NIVPVIAKADTL 168 (301)
T ss_dssp CEEEEECCGGGS
T ss_pred CEEEEEEeCCCC
Confidence 899999999987
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.21 E-value=1.4e-06 Score=96.36 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=53.9
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechh-hhhccc
Q 003166 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA-ALKSYR 90 (843)
Q Consensus 12 ~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~~~~ 90 (843)
++.....-.+|+++|.+|+|||||+++|....- ... ...+.|+......+.+..... .+....
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~---------------~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAE---------------NFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHH
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCCCc-ccc---------------CCCccccCceeEEEEECCccceeecccc
Confidence 333334455899999999999999999954321 111 111234443333333321000 000000
Q ss_pred cccCCCceEEEEEcCCCCccchH-------HHHHHhhccCeEEEEEeCCC
Q 003166 91 GERQGNEYLINLIDSPGHVDFSS-------EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~-------e~~~~l~~~D~ailVvda~~ 133 (843)
.+.......+.++||||...+.. .....++.+|++++|+|+.+
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 00111134699999999987654 56788999999999999975
No 206
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.12 E-value=3.6e-06 Score=94.68 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCccchHHHHHHh------hccCeEEEEEeCCCccchhHHHHHHHHHcCCC-c-eEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l------~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~-p-~ilviNK~D~~ 163 (843)
.++.+.||||||...........+ ..+|.+++|+||..|. ......+.. ...+ | ..+++||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 467889999999876433333222 2589999999998874 222222222 3346 6 66899999965
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.09 E-value=1.7e-06 Score=94.43 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.||||||..+-.. .....+|.+++|+|+..|...+. +.... ..++.++++||+|+.
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDG 206 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTT
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhcc
Confidence 367899999999865322 23478999999999875432110 00000 124678888999965
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.07 E-value=7.6e-06 Score=92.12 Aligned_cols=135 Identities=14% Similarity=0.110 Sum_probs=72.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEeecCcc-----------ccccccceeeeeeEEEEEeechhh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQ-----------DEAERGITIKSTGISLYYEMTDAA 85 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~D~~~-----------~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
..++|+++|+.|+||||++..|.+..... .|. +-..|.++ .....|+.+-.... ..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~----~~dp~~ 170 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV----GQKPVD 170 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCS----SSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCC----CCCHHH
Confidence 46799999999999999999997654221 021 11222111 01122332221100 000000
Q ss_pred h-hccccccCCCceEEEEEcCCCCccchHHHHHH------hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEE
Q 003166 86 L-KSYRGERQGNEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTV 157 (843)
Q Consensus 86 ~-~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~------l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilvi 157 (843)
+ ..........++.+.||||||...+...+..+ +...|.+++|+|+..|.. .....+.. ..++++ -+++
T Consensus 171 i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~--~~~~~~~f-~~~l~i~gvVl 247 (433)
T 2xxa_A 171 IVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD--AANTAKAF-NEALPLTGVVL 247 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT--HHHHHHHH-HHHSCCCCEEE
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH--HHHHHHHH-hccCCCeEEEE
Confidence 0 00011111136789999999987765544443 346889999999987632 22222221 223553 3799
Q ss_pred EcCCcc
Q 003166 158 NKMDRC 163 (843)
Q Consensus 158 NK~D~~ 163 (843)
||+|..
T Consensus 248 nK~D~~ 253 (433)
T 2xxa_A 248 TKVDGD 253 (433)
T ss_dssp ECTTSS
T ss_pred ecCCCC
Confidence 999965
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.03 E-value=1.1e-05 Score=89.24 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=62.4
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhcccc
Q 003166 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRG 91 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~ 91 (843)
+.....-..|+++|++|+|||||+++|...........+ +.|+......+.+.... ..+..+..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p---------------~tTi~p~~G~v~v~~~r~~~l~~~~~ 78 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP---------------YATIDPEEAKVAVPDERFDWLCEAYK 78 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCS---------------SCCCCTTEEEEEECCHHHHHHHHHHC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCC---------------ceeecceeeeeeeCCcchhhhhhhcc
Confidence 334444568999999999999999999764321111111 22333333333332100 00000000
Q ss_pred ccCCCceEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003166 92 ERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
+...-+..+.++||||... +.......++.+|+++.|+|+.+
T Consensus 79 ~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 79 PKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0001124689999999654 44567888999999999999975
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=1.1e-05 Score=90.38 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=70.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEe--ecCcc-c--c------ccccceeeeeeEEEEEeechh-hh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRQ-D--E------AERGITIKSTGISLYYEMTDA-AL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~D~~~-~--E------~~rgiTi~~~~~~~~~~~~~~-~~ 86 (843)
.+.|+++|+.|+||||++..|...... . -+++.+ .|... . | ...|+.+.... ...... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~--~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~----~~~dp~~i~ 168 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK--R--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEP----NNQNPIEIA 168 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH--T--TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCT----TCSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--c--CCeEEEEecCccchhHHHHHHHHHHhcCCceeecc----ccCCHHHHH
Confidence 578999999999999999999654311 0 111111 12111 0 0 11122211100 000000 00
Q ss_pred hccccccCCCceEEEEEcCCCCcc------chHHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEE
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVD------FSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVN 158 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~d------f~~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviN 158 (843)
..........++.+.||||||... +..++....+ ..|.+++|+|+..|-.. ..+.+.....-.+..+++|
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlT 246 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIIT 246 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEe
Confidence 000111222467889999999755 4555544333 45999999999976332 2233332222234668999
Q ss_pred cCCcc
Q 003166 159 KMDRC 163 (843)
Q Consensus 159 K~D~~ 163 (843)
|+|..
T Consensus 247 KlD~~ 251 (433)
T 3kl4_A 247 KMDGT 251 (433)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 99965
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.95 E-value=2e-05 Score=88.27 Aligned_cols=133 Identities=17% Similarity=0.091 Sum_probs=69.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eE--eecCccc---------cccccceeeeeeEEEEEeechh-h
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VR--MTDTRQD---------EAERGITIKSTGISLYYEMTDA-A 85 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~--~~D~~~~---------E~~rgiTi~~~~~~~~~~~~~~-~ 85 (843)
.+.|+++|..|+||||++..|...... .|. +. ..|.... -...|+.+.... ...+.. .
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-----~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~----~~~dp~~i 170 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-----RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNP----QEKDAIKL 170 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCT----TCCCHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecC----CCCCHHHH
Confidence 568999999999999999999754311 121 11 1222110 112233221100 000000 0
Q ss_pred hhccccccCCCceEEEEEcCCCCccchH----HHH--HHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEE
Q 003166 86 LKSYRGERQGNEYLINLIDSPGHVDFSS----EVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVN 158 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~----e~~--~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviN 158 (843)
+..........++.+.||||||...... ++. .....+|.+++|+||..|-.. ....+... ..++ ..+++|
T Consensus 171 ~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~-~~~~i~gVIlT 247 (443)
T 3dm5_A 171 AKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA--YNQALAFK-EATPIGSIIVT 247 (443)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHH-HSCTTEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH--HHHHHHHH-hhCCCeEEEEE
Confidence 0000011112357899999999654332 222 223357999999999976322 22222222 2344 458999
Q ss_pred cCCcc
Q 003166 159 KMDRC 163 (843)
Q Consensus 159 K~D~~ 163 (843)
|+|..
T Consensus 248 KlD~~ 252 (443)
T 3dm5_A 248 KLDGS 252 (443)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 99965
No 212
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.94 E-value=1.6e-05 Score=84.95 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=72.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc-----------cccccceeeeeeEEEEEeechh-hh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD-----------EAERGITIKSTGISLYYEMTDA-AL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~-----------E~~rgiTi~~~~~~~~~~~~~~-~~ 86 (843)
.+.|+++|+.|+||||++..|..... . ..+++.+.|.+.. -.+.|+.+-... ...+.. .+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~----~~~~p~~~~ 169 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---K-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP----GEKDVVGIA 169 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---H-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCT----TCCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---H-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecC----CCCCHHHHH
Confidence 45789999999999999999965431 1 0122223332210 011233322110 000000 00
Q ss_pred hccccccCCCceEEEEEcCCCCcc--chHHHH------HHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEE
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVD--FSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTV 157 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~d--f~~e~~------~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilvi 157 (843)
.........+++.+.||||||... ...... ..+..+|.+++|+|+..| .......+.... .++ ..+++
T Consensus 170 ~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVl 246 (297)
T 1j8m_F 170 KRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIII 246 (297)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEE
Confidence 011111111467899999999877 433322 345679999999999865 223333333322 467 55899
Q ss_pred EcCCcc
Q 003166 158 NKMDRC 163 (843)
Q Consensus 158 NK~D~~ 163 (843)
||+|..
T Consensus 247 nk~D~~ 252 (297)
T 1j8m_F 247 TKMDGT 252 (297)
T ss_dssp ECGGGC
T ss_pred eCCCCC
Confidence 999965
No 213
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.84 E-value=2.2e-05 Score=91.17 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=65.3
Q ss_pred cHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechh
Q 003166 5 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (843)
Q Consensus 5 ~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
+.+-+.-+..-..+...|+|+|.+|+|||||+|+|+.....+.. .|++ ++.|. ..+.|...
T Consensus 24 ~~eal~~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~--~~tt-----------~~~T~----gi~~~~~~-- 84 (592)
T 1f5n_A 24 NPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSL--GSTV-----------QSHTK----GIWMWCVP-- 84 (592)
T ss_dssp CHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCC--CCSS-----------SCCCC----SEEEEEEE--
T ss_pred CHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHhHcCCCCcccc--CCCC-----------CCcee----EEEEeecc--
Confidence 33333333333456778999999999999999999654322211 1110 11111 11223100
Q ss_pred hhhccccccCCCceEEEEEcCCCCccchH------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc
Q 003166 85 ALKSYRGERQGNEYLINLIDSPGHVDFSS------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALG 148 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~ 148 (843)
.....+..+.||||||..+... ....++...-..++|+|+..++..+...++..+..
T Consensus 85 -------~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 85 -------HPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp -------CSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHT
T ss_pred -------cccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHH
Confidence 0012366899999999875322 12222333223378888888888887766665543
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.83 E-value=4.6e-05 Score=77.62 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCc------cccccccceeeeeeEEEE----Eeechhhh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTR------QDEAERGITIKSTGISLY----YEMTDAAL 86 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~------~~E~~rgiTi~~~~~~~~----~~~~~~~~ 86 (843)
.+.++|+++|+.|+|||||+++|+.......+ .. +...|.. ..+ ..|.. ...+. +.......
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~--~~-~i~~d~~~~~d~~~~~-~~~~~----~~~~~~~~~~~l~~~~~ 107 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYK--IA-CIAGDVIAKFDAERME-KHGAK----VVPLNTGKECHLDAHLV 107 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCC--EE-EEEEETTTHHHHHHHH-TTTCE----EEEEECTTCSSCCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCe--EE-EEECCCCCCccHHHHH-hcCCc----EEEecCCceEeccHHHH
Confidence 46789999999999999999999876422111 11 0011111 000 00110 01110 00000000
Q ss_pred hccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..........+..+.++||+|....... .-...+..+.|+|+..+....... ....+.|.++++||+|+.
T Consensus 108 ~~~~~~l~~~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 108 GHALEDLNLDEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIEKH----PGIMKTADLIVINKIDLA 177 (226)
T ss_dssp HHHHTTSCGGGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTTTC----HHHHTTCSEEEEECGGGH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHhhh----hhHhhcCCEEEEeccccC
Confidence 0000111123457899999995321100 012345678888876544322211 112368899999999986
No 215
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.64 E-value=0.00012 Score=73.23 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=51.4
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC-----CceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~-----~p~ilviNK~D~~ 163 (843)
.+.+.|||||+.. ...+..++..+|.+|+++.+...- ..+...++.+...+ +++.+++|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999987 456788899999999999998766 67777777776543 4667899999954
No 216
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.57 E-value=5.1e-05 Score=83.07 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-----------chhHHHHHHHHHc----CCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-----------~~~t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.+|||+|+..|...+...++.++++|+|+|.++-- .......+..... .++|+|||+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 688999999999999999999999999999999998721 1122334444433 4689999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 272 L~ 273 (353)
T 1cip_A 272 LF 273 (353)
T ss_dssp HH
T ss_pred ch
Confidence 75
No 217
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=97.50 E-value=0.00011 Score=74.01 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=62.4
Q ss_pred CCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCE
Q 003166 372 PEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNT 451 (843)
Q Consensus 372 ~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdI 451 (843)
.++||.+.|..++. ..|. +..+||.+|++++||.|.+++.+ . ..+|++|.. ...++++|.|||.
T Consensus 3 ~~~p~rl~v~~v~~--g~G~-v~~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~~I~~----~~~~~~~A~aGd~ 66 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGT-VVLGKLESGSICKGQQLVMMPNK----H-----NVEVLGILS----DDVETDTVAPGEN 66 (204)
T ss_dssp ----CBEEEEEEEE--SSSE-EEEEECCBSCEESSCCEEETTTT----E-----EEEEEEECS----SSSCBSEECTTSE
T ss_pred CCCCEEEEEEEEEc--CCCE-EEEEEEecCEEECCCEEEECCCC----C-----EEEEEEEEE----CCEEeEEECCCCE
Confidence 35788888888765 4565 89999999999999999986422 1 258888874 3367999999999
Q ss_pred EEE--eccccccccce-eeecCCC
Q 003166 452 VAM--VGLDQYITKNA-TLTNEKE 472 (843)
Q Consensus 452 v~i--~gl~~~~~~tg-TL~~~~~ 472 (843)
+++ .|++......| +|+++.+
T Consensus 67 V~l~L~gi~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 67 LKIRLKGIEEEEILPGFILCDPNN 90 (204)
T ss_dssp EEEEEEESSSSCCCTTCEEBCSSS
T ss_pred EEEEEcCCCHHHCccceEEECCCC
Confidence 999 67765445677 8887654
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.43 E-value=0.00027 Score=78.74 Aligned_cols=117 Identities=13% Similarity=0.082 Sum_probs=67.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..++++|+.|+|||||++.|+.. ... ..|.... +..+..+ +++ .++ ......
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl---~~p-~~GsI~~-~g~~~t~-~~~---------v~q-------------~~~~~~ 121 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI---GNE-EEGAAKT-GVVEVTM-ERH---------PYK-------------HPNIPN 121 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC---CTT-STTSCCC-CC----C-CCE---------EEE-------------CSSCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCC---CCc-cCceEEE-CCeecce-eEE---------ecc-------------ccccCC
Confidence 48999999999999999999652 211 1222111 1101000 111 121 001225
Q ss_pred EEEEcCCCCcc---chHHHHHH--hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccccc
Q 003166 100 INLIDSPGHVD---FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 100 i~liDTPGh~d---f~~e~~~~--l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~ 166 (843)
++++|+||... -..+.... +...|..++ +|+.. .+.|...+.+.+...+.|+++++||.|..+++
T Consensus 122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD 191 (413)
T 1tq4_A 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITN 191 (413)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccC
Confidence 78999999642 12333332 233454444 77654 46666677777777889999999999987543
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.00025 Score=76.57 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=67.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc---------cc-----cccceeeeeeEEEEEee---
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD---------EA-----ERGITIKSTGISLYYEM--- 81 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~---------E~-----~rgiTi~~~~~~~~~~~--- 81 (843)
.+.|+++|+.|+||||++..|..... . ..|++.+.|.+.. +. ..++.+-. ...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~---~-~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip------~~~~~~ 174 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA---E-LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVK------ANKLNA 174 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH---H-TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEEC------CSSTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---H-CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEe------CCCCCC
Confidence 46799999999999999999965421 1 1233333332211 00 12222210 110
Q ss_pred ch--hhhhccccccCCCceEEEEEcCCCCccchHHHHHHh------------hccCeEEEEEeCCCccchhHHHHHHHHH
Q 003166 82 TD--AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAAL------------RITDGALVVVDCIEGVCVQTETVLRQAL 147 (843)
Q Consensus 82 ~~--~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l------------~~~D~ailVvda~~gv~~~t~~~l~~~~ 147 (843)
.. .....+.. ...+++.+.||||||...........+ ..+|.+++|+|+..| .. .+.++.
T Consensus 175 ~p~~~~~~~l~~-~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~ 248 (320)
T 1zu4_A 175 DPASVVFDAIKK-AKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAE 248 (320)
T ss_dssp CHHHHHHHHHHH-HHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHH
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHH
Confidence 00 00111111 112467899999999776433322222 137899999999854 12 223332
Q ss_pred c--CCCceE-EEEEcCCcc
Q 003166 148 G--ERIRPV-LTVNKMDRC 163 (843)
Q Consensus 148 ~--~~~p~i-lviNK~D~~ 163 (843)
. ...++. +++||+|..
T Consensus 249 ~~~~~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 249 EFSKVADVSGIILTKMDST 267 (320)
T ss_dssp HHTTTSCCCEEEEECGGGC
T ss_pred HHhhcCCCcEEEEeCCCCC
Confidence 2 234444 789999965
No 220
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.40 E-value=0.00051 Score=80.79 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=39.8
Q ss_pred eEEEEEcCCCCccc---------hHHHHH---H-hhc-cCeEEEEEeCCCccchhH-HHHHHHHHcCCCceEEEEEcCCc
Q 003166 98 YLINLIDSPGHVDF---------SSEVTA---A-LRI-TDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 98 ~~i~liDTPGh~df---------~~e~~~---~-l~~-~D~ailVvda~~gv~~~t-~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
-.+.|+|.||...- ...+.. . +.. ...+++++++......+. ..+++.+...+.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 35899999985431 122222 2 222 355667777665544332 45555666678899999999998
Q ss_pred c
Q 003166 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 227 v 227 (608)
T 3szr_A 227 V 227 (608)
T ss_dssp S
T ss_pred c
Confidence 7
No 221
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.40 E-value=0.0001 Score=81.04 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=46.2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc----------cc-hhHHHHHHHHHc----CCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG----------VC-VQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g----------v~-~~t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.++||+|+..|...+...++.++++|+|+|.++- -. ......|..... .++|+|||+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 68899999999999999999999999999999999872 11 122344444432 4689999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 280 L~ 281 (362)
T 1zcb_A 280 LL 281 (362)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 222
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.38 E-value=0.00014 Score=78.74 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC----------ccc-hhHHHHHHHHHc----CCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVC-VQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~----------gv~-~~t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.+|||+|+..|...+...++.++++|+|+|.++ --. ......|..... .++|++||.||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 6889999999999999999999999999999999982 111 122334443332 4689999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 240 L~ 241 (340)
T 4fid_A 240 LF 241 (340)
T ss_dssp HH
T ss_pred hh
Confidence 77
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.20 E-value=0.00042 Score=75.01 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=67.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCcc---cc------ccccceeeeeeEEEEEeechhhhh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRQ---DE------AERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--D~~~---~E------~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
-..|+++|+.|+|||||+..|..... . ..|++.+. |... .| +..|+.+......+ ........
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~---~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~v~e 202 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK---N-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAVAYD 202 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH---H-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---h-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHHHHH
Confidence 45789999999999999999965421 1 12332221 2111 11 12232211000000 00000001
Q ss_pred ccccccCCCceEEEEEcCCCCcc----chHHHHHH--hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCC
Q 003166 88 SYRGERQGNEYLINLIDSPGHVD----FSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~d----f~~e~~~~--l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
++.... ..++.+.++||+|... +..++... .-..|-.++|+|+..|- +....++.....--...+++||+|
T Consensus 203 ~l~~~~-~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 203 AIQHAK-ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHH-HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHH-hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 110000 1234567899999743 33333221 12478999999988762 222333332222233578899999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
-.
T Consensus 280 ~~ 281 (328)
T 3e70_C 280 AD 281 (328)
T ss_dssp GC
T ss_pred Cc
Confidence 54
No 224
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.20 E-value=0.00035 Score=77.46 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=52.5
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC----------ccchh-HHHHHHHHHc----CCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE----------GVCVQ-TETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~----------gv~~~-t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.||||+|+..|...+...++.++++|+|+|.++ --..+ ....+..... .++|++||.||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6889999999999999999999999999999999987 22222 2233343332 3678999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 296 L~ 297 (402)
T 1azs_C 296 LL 297 (402)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.18 E-value=0.00031 Score=74.41 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...+|+++|.+|+|||||+|+|+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34589999999999999999996543
No 226
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.16 E-value=0.00038 Score=75.11 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCC-------Cccch----hHHHHHHHHHc----CCCceEEEEEcCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCV----QTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~-------~gv~~----~t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.+|||.|+..|...+...++.++++|+|+|.+ +.-.. .....|..... .++|+++|.||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 789999999999999999999999999999999776 21111 12334444432 4689999999999
Q ss_pred cc
Q 003166 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 246 L~ 247 (327)
T 3ohm_A 246 LL 247 (327)
T ss_dssp HH
T ss_pred hh
Confidence 86
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.14 E-value=0.00061 Score=76.10 Aligned_cols=134 Identities=17% Similarity=0.213 Sum_probs=67.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCcc---ccc------cccceeeeeeEEEEEeechhhh-
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRQ---DEA------ERGITIKSTGISLYYEMTDAAL- 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--D~~~---~E~------~rgiTi~~~~~~~~~~~~~~~~- 86 (843)
.+.|+++|+.|+||||++..|......- .+.+... |... .++ ..|+.+-... ...+...+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~----g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~----~~~~p~~i~ 169 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK----GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM----DGESPESIR 169 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC----TTCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEeeccccCchhHHHHHHhcccCCccEEecC----CCCCHHHHH
Confidence 4678999999999999999996543210 1222222 2111 011 1222221110 00000000
Q ss_pred hccccccCCCceEEEEEcCCCCccch----HHHH--HHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEc
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVDFS----SEVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNK 159 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~----~e~~--~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK 159 (843)
..........++.+.||||||..... .++. ..+..+|.+++|+|+..|. ......+.. ...++ .-+++||
T Consensus 170 ~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq--~av~~a~~f-~~~l~i~GVIlTK 246 (425)
T 2ffh_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALSVARAF-DEKVGVTGLVLTK 246 (425)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHH-HHHTCCCEEEEES
T ss_pred HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH--HHHHHHHHH-HhcCCceEEEEeC
Confidence 11111111246778999999976443 2221 1223589999999998652 122222221 12344 4478999
Q ss_pred CCcc
Q 003166 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|..
T Consensus 247 lD~~ 250 (425)
T 2ffh_A 247 LDGD 250 (425)
T ss_dssp GGGC
T ss_pred cCCc
Confidence 9965
No 228
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.13 E-value=0.0017 Score=65.37 Aligned_cols=66 Identities=11% Similarity=-0.060 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCC-ccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC-CCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh-~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~-~~p~ilviNK~D~~ 163 (843)
..+.+.+||||+. .+. .+..++..+|.+|+++.+...-...+...++.+... +.+..+++|++|..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 3678999999997 543 456788999999999998765555666666666553 67777899999966
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.10 E-value=0.00081 Score=76.04 Aligned_cols=135 Identities=13% Similarity=0.176 Sum_probs=65.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCccc---c------ccccceeeeeeEEEEEeechhhhh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRQD---E------AERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--D~~~~---E------~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
-..|+|+|..|+|||||+..|.+... . ..|++.+. |.... + .++++.+-.....+ ........
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~---~-~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~--~p~~tV~e 366 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE---Q-QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA--DSASVIFD 366 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH---H-TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC--CHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh---h-cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc--CHHHHHHH
Confidence 35789999999999999999965421 1 13443332 22111 1 12333321110000 00000001
Q ss_pred ccccccCCCceEEEEEcCCCCccc----hHH---HHHHhh-----ccCeEEEEEeCCCccchhHHHHHHHHH-cCCCceE
Q 003166 88 SYRGERQGNEYLINLIDSPGHVDF----SSE---VTAALR-----ITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPV 154 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df----~~e---~~~~l~-----~~D~ailVvda~~gv~~~t~~~l~~~~-~~~~p~i 154 (843)
++... ..+++.+.||||+|.... ..+ +.+.++ .-+-++||+|+..|-.. ...++... ..+ ...
T Consensus 367 ~l~~a-~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a--l~~ak~f~~~~~-itg 442 (503)
T 2yhs_A 367 AIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEAVG-LTG 442 (503)
T ss_dssp HHHHH-HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH--HHHHHHHHHHTC-CSE
T ss_pred HHHHH-HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH--HHHHHHHHhhcC-CCE
Confidence 11000 113456889999997533 222 222222 14567999999876321 12222222 223 345
Q ss_pred EEEEcCCcc
Q 003166 155 LTVNKMDRC 163 (843)
Q Consensus 155 lviNK~D~~ 163 (843)
+++||+|..
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 789999964
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.01 E-value=0.00085 Score=71.82 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=27.0
Q ss_pred HHHHHHhhccc-------CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 6 AEELRRIMDFK-------HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 6 ~~~~~~~~~~~-------~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+.+.+++... ...+.|+++|+.|+||||++..|...
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34555665432 23457899999999999999999654
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.95 E-value=0.0033 Score=70.52 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=30.7
Q ss_pred ccHHHHHHhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 4 FTAEELRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 4 ~~~~~~~~~~~~----~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.+-+..++.. ..++.-|+|+|..++|||||+|+|+..
T Consensus 48 v~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp ECHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 455556556553 356788999999999999999999976
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.94 E-value=0.00046 Score=72.28 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++++|.+|+|||||+++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 58999999999999999999644
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.92 E-value=0.0007 Score=72.19 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=38.2
Q ss_pred CceEEEEEcCCCCccchHHH----HHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCC-Cc-eEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEV----TAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~----~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p-~ilviNK~D~~ 163 (843)
.++.+.|+||||........ ...+. ..|.+++|+|+..+.. .+.+.+.... ++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~----~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE----DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH----HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH----HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 35689999999987654332 22222 2578899999986531 2222222222 22 33677999965
No 234
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.88 E-value=0.0014 Score=70.00 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|+++|+.|+|||||+..|...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999654
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.81 E-value=0.0018 Score=69.07 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=66.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc-----c------ccccceeeeeeEEEEEeechhhh-
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD-----E------AERGITIKSTGISLYYEMTDAAL- 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~-----E------~~rgiTi~~~~~~~~~~~~~~~~- 86 (843)
.+.|+++|+.|+||||++..|..... . ..|++.+.|.+.. + .+.|+.+-.+. ...+...+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~---~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~----~~~~p~~l~ 169 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK---G-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM----DGESPESIR 169 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH---H-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC----TTCCHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---H-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcC----CCCCHHHHH
Confidence 46789999999999999999965421 1 0223333222110 0 01122221100 00000000
Q ss_pred hccccccCCCceEEEEEcCCCCccchH----HHHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEc
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVDFSS----EVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNK 159 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~----e~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK 159 (843)
..........++.+.||||||...... ++.... ..+|.+++|+|+..+ .......+... ..+++ -+++||
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk 246 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTK 246 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEEC
Confidence 000001111357899999998754322 222222 258999999998754 22222222221 12443 378999
Q ss_pred CCcc
Q 003166 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|..
T Consensus 247 ~d~~ 250 (295)
T 1ls1_A 247 LDGD 250 (295)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 9965
No 236
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.80 E-value=0.00068 Score=74.08 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCC----------Cccc-hhHHHHHHHHHc----CCCceEEEEEcC
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCI----------EGVC-VQTETVLRQALG----ERIRPVLTVNKM 160 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~----------~gv~-~~t~~~l~~~~~----~~~p~ilviNK~ 160 (843)
+...+.||||+|+..|...+...++.+|++|+|+|.+ +--. ......|..... .++|++||.||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4678999999999999999999999999999999987 1111 112334444332 468999999999
Q ss_pred Ccc
Q 003166 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 261 DL~ 263 (354)
T 2xtz_A 261 DIF 263 (354)
T ss_dssp HHH
T ss_pred chh
Confidence 976
No 237
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.53 E-value=0.0043 Score=66.27 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=45.7
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc----CCCceE-EEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~----~~~p~i-lviNK~D~ 162 (843)
..+.+.|||||+..... .+..++..+|.+|+|+++...-...+..+++.+.. .+++++ +++|+.+.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46889999999876532 23457789999999998865433444555555544 345555 89999984
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.35 E-value=0.0011 Score=70.76 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=49.6
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhH-HHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t-~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.+||| +..|..-...+++.+|++|+|+|+++.. .... ...+..+...++|+++|+||+|+.
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 6889999 8888877778899999999999999754 2322 233334455789999999999987
No 239
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.32 E-value=0.0032 Score=66.59 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=44.2
Q ss_pred EEcCCCCc-cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 102 LIDSPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~-df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+=+-|||. ....++...+..+|+++.|+||.++.......+-+.. .++|.++++||+|+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGS
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccC
Confidence 34679998 5778899999999999999999998776544443332 578999999999987
No 240
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.29 E-value=0.0046 Score=63.98 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC---------CceEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER---------IRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~---------~p~ilviNK~D~~ 163 (843)
.+.+.|||||+... ..+..++..+|.+|+|+++...-...+..+++.+...+ .+.-+++|+.|..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 57899999999654 47788899999999999987644445555666655443 3455899999854
No 241
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=96.29 E-value=0.0094 Score=58.35 Aligned_cols=110 Identities=21% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003166 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~ 758 (843)
+.-+.||.+.++-+- .-...+++-++.|-..|.++|+..++.+-..|...+.|+++-..+|+|...|.+.. .|++.
T Consensus 80 ~~~l~nv~vVVtRyf---GGi~LG~ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~ 155 (191)
T 2cve_A 80 AQGLDRVAVLVVRYF---GGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEE 155 (191)
T ss_dssp HTTBCSEEEEEEEEC---CSSCCHHHHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEE
T ss_pred HcCCCcEEEEEEEEe---CCcccCcchHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceecc
Confidence 567888888887542 33456666677888899999999999999999999999999999999999999888 99888
Q ss_pred cccCCCCc-EEEEEEeehhhhcCccHHHhhhCCCceee
Q 003166 759 MQRPGTPL-YNIKAYLPVVESFGFSSTLRAATSGQAFP 795 (843)
Q Consensus 759 ~~~~g~~~-~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+..+ . +.++..+|..+.-.|...|..+|+|++.+
T Consensus 156 ~y~~---~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 156 TYTP---EGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEET---TEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEcC---CeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 7653 4 88999999999999999999999999754
No 242
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=96.18 E-value=0.0066 Score=60.66 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=95.1
Q ss_pred CCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003166 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~ 758 (843)
+.-+.||.|.++-+- .-...+++-++.|-..|.++|+.+|+.+-..|...+.|.++-..+|+|...|.+..+.|++.
T Consensus 92 ~~~l~nv~vVVtRyf---GGikLG~ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~ 168 (217)
T 1vi7_A 92 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINS 168 (217)
T ss_dssp HHTCCSEEEECCEEC---CSCCCCHHHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEE
T ss_pred HcCCCCEEEEEEEEe---CCceecccHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEce
Confidence 456788888776442 33456666677889999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceee
Q 003166 759 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 795 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+..+ .+.+...+|..+.-.|...|..+|+|++.+
T Consensus 169 ~y~~---~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~ 202 (217)
T 1vi7_A 169 DYQA---FVLLRVALPAAKVAEFSAKLADFSRGSLQL 202 (217)
T ss_dssp EESS---SEEEEEEECSSTHHHHHHHHHHHHTTCCCC
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEE
Confidence 8653 588899999999999999999999999854
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.12 E-value=0.024 Score=60.48 Aligned_cols=135 Identities=19% Similarity=0.206 Sum_probs=66.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCccc---c------ccccceeeeeeEEEEEeechhhhhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRQD---E------AERGITIKSTGISLYYEMTDAALKS 88 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--D~~~~---E------~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
..++++|+.|+|||||+..|.+... . ..|++.+. |.... | .++++.+-..... ..........+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~---~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~~~v~e~ 175 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLK---N-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAATVLSKA 175 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH---H-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH---H-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHHHHHHHH
Confidence 5789999999999999999965421 1 13443322 22111 1 1224433211110 00000000011
Q ss_pred cccccCCCceEEEEEcCCCCccchHHH-------HHHh-----hccCeEEEEEeCCCccchhHHHHHHHHH-cCCCceEE
Q 003166 89 YRGERQGNEYLINLIDSPGHVDFSSEV-------TAAL-----RITDGALVVVDCIEGVCVQTETVLRQAL-GERIRPVL 155 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~-------~~~l-----~~~D~ailVvda~~gv~~~t~~~l~~~~-~~~~p~il 155 (843)
+..... .+....++||.|...+.... ..++ ...+-.++|+|++.|..+... .+... ..++ .++
T Consensus 176 l~~~~~-~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~i 251 (302)
T 3b9q_A 176 VKRGKE-EGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGL 251 (302)
T ss_dssp HHHHHH-TTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEE
T ss_pred HHHHHH-cCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEE
Confidence 110000 12335789999976543221 1111 124556999999888765543 22222 2343 567
Q ss_pred EEEcCCcc
Q 003166 156 TVNKMDRC 163 (843)
Q Consensus 156 viNK~D~~ 163 (843)
+++|+|-.
T Consensus 252 iiThlD~~ 259 (302)
T 3b9q_A 252 ILTKLDGS 259 (302)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCC
Confidence 89999954
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.74 E-value=0.03 Score=61.04 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=66.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEee--cCccc---c------ccccceeeeeeEE-EEEeechhhh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMT--DTRQD---E------AERGITIKSTGIS-LYYEMTDAAL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~--D~~~~---E------~~rgiTi~~~~~~-~~~~~~~~~~ 86 (843)
-..|+++|+.|+|||||+..|..... . ..|++.+. |.... | .++++.+-..... + .......
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~---~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~--~p~~tv~ 230 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK---N-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA--KAATVLS 230 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH---H-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC--CHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc---c-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc--ChhhhHH
Confidence 35789999999999999999965421 1 13433322 22110 1 1223332111000 0 0000000
Q ss_pred hccccccCCCceEEEEEcCCCCccchHHH-------HHHh-----hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE
Q 003166 87 KSYRGERQGNEYLINLIDSPGHVDFSSEV-------TAAL-----RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV 154 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~-------~~~l-----~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i 154 (843)
.++.... ..+....++||.|...+.... ..++ ...+-+++|+|++.|....... .......++ .+
T Consensus 231 e~l~~~~-~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~-~~~~~~~g~-t~ 307 (359)
T 2og2_A 231 KAVKRGK-EEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA-REFNEVVGI-TG 307 (359)
T ss_dssp HHHHHHH-HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH-HHHHHHTCC-CE
T ss_pred HHHHHHH-hCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH-HHHHHhcCC-eE
Confidence 1111000 012335789999976543221 1111 1245569999988876655431 122222333 46
Q ss_pred EEEEcCCcc
Q 003166 155 LTVNKMDRC 163 (843)
Q Consensus 155 lviNK~D~~ 163 (843)
++++|+|-.
T Consensus 308 iiiThlD~~ 316 (359)
T 2og2_A 308 LILTKLDGS 316 (359)
T ss_dssp EEEESCTTC
T ss_pred EEEecCccc
Confidence 789999954
No 245
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.36 E-value=0.016 Score=63.75 Aligned_cols=62 Identities=18% Similarity=-0.002 Sum_probs=40.6
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.-+|+| +.+|........+.+|++++|+|+.+........+.+.+ .++|+++|+||+|+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl 111 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLL 111 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGS
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcC
Confidence 34445555 778888887777999999999999986543333333332 378999999999987
No 246
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.27 E-value=0.0047 Score=64.53 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=39.3
Q ss_pred CCCccc-hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 106 PGHVDF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df-~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
|||... ..++...+..+|.++.|+||.++.......+ .. . ++|+++++||+|+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~l-l--~k~~iivlNK~DL~ 59 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DF-S--RKETIILLNKVDIA 59 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CC-T--TSEEEEEEECGGGS
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hh-c--CCCcEEEEECccCC
Confidence 898754 4688999999999999999998776543222 11 1 89999999999987
No 247
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=94.97 E-value=0.028 Score=56.12 Aligned_cols=65 Identities=5% Similarity=-0.054 Sum_probs=36.6
Q ss_pred EEEEEcCC------CCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HHHHc----CCCceEEEEEcC-Ccc
Q 003166 99 LINLIDSP------GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALG----ERIRPVLTVNKM-DRC 163 (843)
Q Consensus 99 ~i~liDTP------Gh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~----~~~p~ilviNK~-D~~ 163 (843)
++..--+| |+..+...+..+...+|++|+|||+++.-....+.-+ +.+.. .++|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44555666 6667777789999999999999999986333343322 22211 467999999995 676
No 248
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.88 E-value=0.053 Score=56.26 Aligned_cols=67 Identities=21% Similarity=0.045 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~ 162 (843)
..+.+.|||||+..........++..+|.+|+|+.+...-...+...++.+...+++.+ +++|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 46789999999976543333344557999999999887666666777777777888877 89999984
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.63 E-value=0.011 Score=63.10 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=41.0
Q ss_pred CccchHHHHHHhhccCeEEEEEeCCCcc-chhH-HHHHHHHHcCCCceEEEEEcCCcc
Q 003166 108 HVDFSSEVTAALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 108 h~df~~e~~~~l~~~D~ailVvda~~gv-~~~t-~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..|..-...+++.+|++++|+|+++.. .... ...+..+...++|+++++||+|+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLL 123 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCC
Confidence 4444444445789999999999999764 4432 334445666889999999999987
No 250
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.60 E-value=0.15 Score=56.85 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=30.1
Q ss_pred ccHHHHHHhhcc----cCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 4 FTAEELRRIMDF----KHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 4 ~~~~~~~~~~~~----~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.+-+..++.. ..++.-|+|+|..++|||+|+|.|+..
T Consensus 48 ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~~ 90 (457)
T 4ido_A 48 LDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (457)
T ss_dssp ECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHHH
T ss_pred ECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHHH
Confidence 455666655543 356889999999999999999988754
No 251
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.48 E-value=0.017 Score=61.65 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|++|+|||||+++|+
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 478999999999999999994
No 252
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.11 E-value=0.043 Score=60.20 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=38.4
Q ss_pred CccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 108 HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 108 h~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+|...+....+.+|++++|+|+.+........+.+. ..++|+++|+||+|+.
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~--~~~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF--VGNNKVLLVGNKADLI 109 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH--SSSSCEEEEEECGGGS
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHH--hCCCcEEEEEEChhcC
Confidence 46788777778888999999999987432111122122 2378999999999986
No 253
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.04 E-value=0.098 Score=54.22 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCccchHH-HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc----CCCceE-EEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~----~~~p~i-lviNK~D~ 162 (843)
..+.+.||||||......- .......+|.+|+|+.+...-...+..+++.+.. .+++.+ +++|+.+.
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 3578999999996532111 1112357999999998865333333344444332 245643 78999874
No 254
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.04 E-value=0.17 Score=53.17 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCccchHH-HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc----CCCceE-EEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~----~~~p~i-lviNK~D~ 162 (843)
..+.+.||||||......- .......+|.+|+|+.+...-...+..+++.+.. .+.+++ +++|+.+.
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 4678999999996432111 1122367999999998764333333333333322 356644 78999863
No 255
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.41 E-value=0.085 Score=55.20 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=41.4
Q ss_pred CCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-------HHHHHH-cCCCceEEEEEc-CCcc
Q 003166 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-------VLRQAL-GERIRPVLTVNK-MDRC 163 (843)
Q Consensus 106 PGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-------~l~~~~-~~~~p~ilviNK-~D~~ 163 (843)
-|+..+...+..+...+|++|+|||+++.-....+. ++.... ..++|++|+.|| .|.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 367888899999999999999999998864322322 121222 257899999997 5887
No 256
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.26 E-value=0.1 Score=52.83 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
..+.+.|||||+... ..+..++..+|.+|+|+++...-...+...++.+...+.+.+ +++||.|..
T Consensus 110 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 467899999999765 567788999999999998876544555666666666676655 799999965
No 257
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.18 E-value=0.11 Score=55.37 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=37.0
Q ss_pred HHhhccCeEEEEEeCCCccchhH--HHHHHHHHcCCCceEEEEEcCCcc
Q 003166 117 AALRITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 117 ~~l~~~D~ailVvda~~gv~~~t--~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+..+|.+++|+|+.++..... .+.+..+...++|+++++||+|+.
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 36889999999999997654433 344455667899999999999987
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.14 E-value=0.11 Score=55.37 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|+|||||+++|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 259
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.89 E-value=0.11 Score=53.64 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
..+.+.|||||+... ..+..++..+|.+|+|+.+...-...+...++.+...+.+.+ +++|++|..
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 357799999998765 667788999999999998875544555666666666566655 799999854
No 260
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.87 E-value=0.25 Score=50.88 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH------cCCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL------GERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~------~~~~p~i-lviNK~D~~ 163 (843)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-...+..+++.+. ..+++++ +++|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 5688999999997653 3567788999999999987533333333333332 1356665 899999854
No 261
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.86 E-value=0.42 Score=51.18 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=34.3
Q ss_pred CeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
+++++|+-+..-....++..+..+...++|+. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48899998877667778888899999999987 799998754
No 262
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.32 E-value=0.17 Score=53.27 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.+.+.|||||+..... .+....+.+|++|+|+.+...-.......++.+...+.+++ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 4678999999987653 34455678999999999987666777777788888888866 799999965
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.30 E-value=0.082 Score=52.29 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=22.7
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 10 ~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+. ..-..|+++|..|+|||||++.|....|
T Consensus 21 ~~~m~~-~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 21 QSMMTG-EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HhhhcC-CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344543 3345799999999999999999966544
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.29 E-value=0.072 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+++++|+.|+|||||++.|....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976654
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.25 E-value=0.064 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.++|+|+.|+|||||++.|+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999764
No 266
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.20 E-value=0.083 Score=51.54 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 16 KHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..+-..|+++|+.|+|||||++.|..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 34445799999999999999999944
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.17 E-value=0.075 Score=51.68 Aligned_cols=24 Identities=8% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+-++++|++|+|||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999997653
No 268
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.17 E-value=0.096 Score=43.31 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=54.3
Q ss_pred EEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceee
Q 003166 730 YLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 795 (843)
Q Consensus 730 ~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
-...++++-..+|+|...|.+..+.|.+.+..+ .+.+...+|..+.-.|...|+.+|+|++.+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~---~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQA---FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE---EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEcccccC---eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 356788999999999999999999999988753 689999999999999999999999999854
No 269
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.05 E-value=0.19 Score=52.54 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.+.+.|||||+..... .+...++.+|++|+|+.+...-.......++.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 5679999999976543 33344568999999999987666777777777777888877 899999965
No 270
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=91.98 E-value=0.49 Score=42.14 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=36.4
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003166 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
+..+||.+|+|++|+.| ++ +. ...+|.+|.. +.+.+++|.|||-|++.
T Consensus 50 vivGrVe~G~LK~G~~V----Pg----~~---~vg~VkSIE~----~~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 50 VIIGTVESGMIGVGFKV----KG----PS---GIGGIVRIER----NREKVEFAIAGDRIGIS 97 (116)
T ss_dssp EEEEEEEEEEEETTCEE----EC----SS---CEEEEEEEEE----TTEEESEEETTCEEEEE
T ss_pred eeEEEEeEEEEcCCCCc----CC----Cc---eEEEEEEEEE----CCcCcCCcCCCCEEEEE
Confidence 77889999999999999 12 10 0145666664 55679999999999885
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.94 E-value=0.094 Score=55.72 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||+++|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 3689999999999999999943
No 272
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.81 E-value=0.1 Score=53.14 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~ 162 (843)
..+.+.|||||+..+. .+..++..+|.+|+|+++...-......+.+.+...+++ +.+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4678999999987654 466788999999999998754444455565666666766 4589999984
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.67 E-value=0.079 Score=51.81 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+-++++|+.|||||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999997653
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.63 E-value=0.14 Score=50.99 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..-..|+|+|+.|+|||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999443
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.33 E-value=0.14 Score=49.24 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|+++|++|+|||||+..|....|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3456899999999999999999965544
No 276
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.26 E-value=0.33 Score=51.43 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.+.+.|||||+..... ......+.+|++|+|+.+...-.......++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5679999999987653 33345578999999999987777777777788777788866 889999965
No 277
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.18 E-value=0.12 Score=49.33 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+|+||||++..|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965543
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.07 E-value=0.11 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..++++|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999997653
No 279
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.02 E-value=0.11 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-..++++|+.|||||||++.|....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999996543
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.77 E-value=0.12 Score=50.76 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 558999999999999999998763
No 281
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.73 E-value=0.36 Score=49.86 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
..+.+.|||||+..+ ..+..++..+|.+|+|+.+...-......+++.+... +.++.+++|++++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 457799999999764 4577788899999999998654334445566666555 34667899999654
No 282
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.66 E-value=0.41 Score=50.29 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc------CCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~------~~~p~i-lviNK~D~~ 163 (843)
..+.+.|||||+.... .+..++..+|.+|+|+.+...-.......++.+.. .+++++ +++|+.|..
T Consensus 153 ~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3578999999997654 34667778999999999876544444444444432 356755 799999965
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.65 E-value=0.16 Score=50.44 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=22.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.-+-|+++|+.|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998764
No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.60 E-value=0.15 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++.++++|+.|+|||||+.+|+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999654
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.55 E-value=0.14 Score=48.88 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|+++|++|+|||||...|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999955433
No 286
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.44 E-value=0.16 Score=53.28 Aligned_cols=35 Identities=26% Similarity=0.136 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~ 133 (843)
.+.+.|||||+.. ...+..++..+|.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 5779999999975 5678889999999999998863
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.43 E-value=0.13 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-..++|+|+.|+|||||++.|....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999997654
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.41 E-value=0.17 Score=50.22 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+...|+|+|+.|||||||++.|...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999654
No 289
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.34 E-value=0.14 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.-..++++|+.|+|||||+..|....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34478999999999999999996654
No 290
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.25 E-value=0.18 Score=57.17 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+|.++|.+|+||||+..+|....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999996543
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.06 E-value=0.16 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=21.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.-++|+|+.|+|||||++.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4578999999999999999997654
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.90 E-value=0.19 Score=47.76 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+++|.+|+||||+++.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36899999999999999999 5444
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.86 E-value=0.18 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++-++++|+.|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567899999999999999999764
No 294
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.83 E-value=0.15 Score=49.14 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
.-++++|+.|||||||++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999986
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.77 E-value=0.2 Score=49.92 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+-|+++|+.|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999999999997654
No 296
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.69 E-value=0.32 Score=49.28 Aligned_cols=65 Identities=14% Similarity=0.030 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC--c-eEEEEEcCCcc
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI--R-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~--p-~ilviNK~D~~ 163 (843)
.+.+.|||||+..+. .+..++..+|.+|+|+.+...-...+..+++.+...+. + .-+++|+.|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999997643 56678899999999999875545556667777766653 3 45899999965
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.68 E-value=0.2 Score=49.38 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+..+|+++|.+|+||||+...|....|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999965543
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.66 E-value=0.21 Score=50.28 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+...|++.|.+|+||||++..|....|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999965544
No 299
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.52 E-value=0.11 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|+|+.|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999544
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.51 E-value=0.18 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+|+|+|..|+||||+++.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999955
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.43 E-value=0.24 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.|++.|.+|+||||++..|....|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999965544
No 302
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.36 E-value=0.23 Score=51.66 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|||||||++.|
T Consensus 38 e~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 303
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.32 E-value=0.2 Score=49.34 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+++|+.|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999654
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.21 E-value=0.22 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.|+++|.+|+|||||+..|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999966544
No 305
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.15 E-value=0.79 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+-|.++|.+|+||||++.+|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999443
No 306
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.05 E-value=0.22 Score=48.23 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|++.|.+|+||||++..|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999554
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.94 E-value=0.21 Score=48.65 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||++.|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999954
No 308
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.91 E-value=0.2 Score=50.67 Aligned_cols=20 Identities=40% Similarity=0.391 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 31 e~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.85 E-value=0.31 Score=47.77 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+...|+|.|.+||||||+...|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34568999999999999999999554
No 310
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.84 E-value=0.29 Score=50.10 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHH
Q 003166 19 IRNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~L 39 (843)
-..++|+|+.|+|||||++.|
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999999
No 311
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.83 E-value=0.19 Score=51.36 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|||||||++.|
T Consensus 32 e~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.74 E-value=0.24 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+.|+++|++|+|||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997654
No 313
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.64 E-value=0.26 Score=47.72 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++|+++|.+|+||||+...|....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999965543
No 314
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.64 E-value=0.25 Score=50.52 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=23.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
...|+|+|+.|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4589999999999999999997554543
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.58 E-value=0.27 Score=48.66 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=23.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.......|+|+|.+|+|||||++.|...
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3345568999999999999999999543
No 316
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.47 E-value=0.26 Score=50.79 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 27 e~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 317
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.34 E-value=0.34 Score=47.66 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.+.|++.|.+|+||||++..|....|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999976544
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.24 E-value=0.21 Score=49.97 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++++|+.|+|||||++.|...
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999654
No 319
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.21 E-value=0.21 Score=51.08 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|+|||||++.|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 578999999999999999993
No 320
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.18 E-value=0.25 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..|+++|..||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999943
No 321
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.17 E-value=0.16 Score=49.65 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+|+||||++..|....|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 322
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.12 E-value=0.23 Score=47.96 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-++++++|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999543
No 323
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.04 E-value=2.3 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++.+.|++|+|||||+.++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 48999999999999999999554
No 324
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.02 E-value=0.28 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+-..++|+|+.|+|||||++.|+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 44457999999999999999999654
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.01 E-value=0.26 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.|++.|.+|+||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999965
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.98 E-value=0.26 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.-..|+|+|+.|||||||++.|....|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999966544
No 327
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=87.94 E-value=1.6 Score=43.39 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCcc--ch---HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHVD--FS---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~d--f~---~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
+++-+.||||||... .. ....-+....+.+|+|+++..+-..++...++.+...+.+++ +++|++|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 357899999998653 11 111112122345888888865444555556666666778866 789999854
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.89 E-value=0.29 Score=49.02 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+++|++|+||||++..|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999966544
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.77 E-value=0.28 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3799999999999999999955443
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.51 E-value=0.33 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|..|+||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999965544
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.47 E-value=0.29 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.++++|+.|+|||||+..|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999664
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.42 E-value=0.36 Score=46.52 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..++|++.|.+|+||||++..|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999965543
No 333
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.35 E-value=0.26 Score=51.21 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|||||||++.|
T Consensus 33 e~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 334
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.33 E-value=0.26 Score=50.01 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 35 e~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 335
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.32 E-value=0.26 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=19.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||++.|..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999943
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.31 E-value=0.26 Score=50.29 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 337
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.31 E-value=0.26 Score=50.98 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
-.++++|+.|+|||||++.|
T Consensus 34 e~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.30 E-value=0.5 Score=46.47 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-..|+++|..|+|||||...|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998544
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.30 E-value=0.37 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-..|+|+|+.|||||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4456899999999999999999944
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.26 E-value=0.36 Score=48.08 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|.+|+||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966554
No 341
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.24 E-value=0.34 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|.+|+||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.22 E-value=0.4 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+-..++|+|+.|+|||||++.|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 44568999999999999999999755
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.16 E-value=0.36 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|.++|.+|+||||+...|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999996654
No 344
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.16 E-value=0.27 Score=51.49 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
-.++|+|+.|||||||++.|
T Consensus 35 e~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.11 E-value=0.51 Score=48.18 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=23.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+..+|++.|.+|+||||++..|....|
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999976544
No 346
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.09 E-value=0.28 Score=49.30 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003166 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~L 39 (843)
.++++|+.|+|||||++.|
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 347
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.03 E-value=0.42 Score=46.38 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+|+++|.+|+||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999555
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.98 E-value=0.39 Score=46.37 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
-..|+++|.+||||||+...|....|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999965443
No 349
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.96 E-value=0.28 Score=50.14 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 33 e~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 350
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=86.94 E-value=2.5 Score=44.97 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...++|.+.|++|+|||+|+.++...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999999999444
No 351
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.90 E-value=0.28 Score=50.37 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 36 e~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.89 E-value=0.48 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+...|+|+|..|+|||||++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999855
No 353
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.79 E-value=0.35 Score=48.32 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=25.6
Q ss_pred HHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 7 EELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 7 ~~~~~~~~-~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+..++. -...-.-++|+|+.|+|||||+..|...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34555553 2233357899999999999999999553
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.78 E-value=0.51 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+|+||||++..|....|
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999965544
No 355
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.73 E-value=0.32 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++++|+.|+|||||++.|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 36899999999999999999643
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.72 E-value=0.48 Score=45.93 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|.+.|.+|+||||++..|....|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999965443
No 357
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.67 E-value=0.38 Score=45.74 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.||++.|.+|+||||+...|-...|
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999855444
No 358
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.57 E-value=0.3 Score=50.72 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 51 ei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHH
Confidence 46899999999999999999
No 359
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=86.56 E-value=2 Score=44.12 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCCc-----cc-hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCC
Q 003166 96 NEYLINLIDSPGHV-----DF-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~-----df-~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D 161 (843)
..+.+.+||+||-. +. .....-+-....-+|+|+|+..|-..++...++.+...++++. +++||+.
T Consensus 125 ~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 125 RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 35678999999843 11 1112223334567899999988766666666666667788877 7899984
No 360
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.55 E-value=0.3 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 361
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.50 E-value=0.4 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
++.-++|+|..|||||||++.|+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47789999999999999999998653
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.47 E-value=0.31 Score=50.77 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++|+|+.|+|||||++.|.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999993
No 363
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.42 E-value=0.35 Score=46.78 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|++.|.+|+||||++..|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999554
No 364
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.37 E-value=0.65 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.+.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45689999999999999999765
No 365
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.34 E-value=0.33 Score=49.23 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|+|||||+..|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 478999999999999999985
No 366
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.31 E-value=0.33 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-.+++++|+.|+|||||+..+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999554
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.31 E-value=0.24 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=15.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHH-Hh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV-AA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll-~~ 42 (843)
..++++|+.|||||||++.|. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999996 44
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.27 E-value=0.44 Score=46.14 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+|+||||++..|....|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999966544
No 369
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.26 E-value=0.65 Score=48.90 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=21.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+...|+|+|++|+|||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998543
No 370
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.23 E-value=0.32 Score=50.27 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
-.++++|+.|+|||||++.|
T Consensus 42 ei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.94 E-value=0.43 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.190 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...-|+|+|+.|||||||+..|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999544
No 372
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=85.93 E-value=2.5 Score=45.54 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.+.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999654
No 373
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.91 E-value=0.34 Score=50.36 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 34 e~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 374
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.89 E-value=0.45 Score=48.96 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999966544
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.82 E-value=0.37 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+++|+|+.|+|||||++.|+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999999554
No 376
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.80 E-value=0.35 Score=50.46 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++|+|+.|+|||||++.|
T Consensus 46 e~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 377
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.79 E-value=0.42 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|+|+|+.|||||||+++|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999654
No 378
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.72 E-value=0.35 Score=50.69 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.5
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
-.++++|+.|+|||||++.|
T Consensus 48 e~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 36899999999999999999
No 379
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.66 E-value=0.73 Score=43.99 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.+.|++|+|||||+.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999654
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.55 E-value=0.5 Score=45.47 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
-.+|+|+.|+|||||+++|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999977543
No 381
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.54 E-value=1.5 Score=47.59 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+-+.+.|.|++|+|||||+.+++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999765
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.52 E-value=0.36 Score=49.80 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003166 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~L 39 (843)
.++++|+.|+|||||++.|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.47 E-value=0.44 Score=47.02 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|++.|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999543
No 384
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.47 E-value=0.35 Score=55.22 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+++|+|+.|||||||+++|+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999543
No 385
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.45 E-value=0.5 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+++|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999966544
No 386
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.31 E-value=0.5 Score=48.53 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|+|+|+.|||||||+..|...-|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999965444
No 387
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.23 E-value=0.33 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++|+|+.|+|||||++.|+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999443
No 388
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.18 E-value=0.57 Score=49.74 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=21.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+...|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999554
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.03 E-value=0.43 Score=45.89 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=17.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|++.|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999955433
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.03 E-value=0.55 Score=46.99 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..+|+++|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999966544
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.88 E-value=0.55 Score=45.49 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+-..|+++|.+|+||||++..|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999544
No 392
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.85 E-value=0.44 Score=51.75 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
--++++|+.|||||||++.|.
T Consensus 31 e~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 358999999999999999993
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=84.83 E-value=0.55 Score=46.16 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|++.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999965543
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.75 E-value=0.59 Score=46.46 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|.+|+||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999966544
No 395
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.69 E-value=0.46 Score=46.56 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..|++.|..|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999443
No 396
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.55 E-value=0.49 Score=44.96 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|++.|.+|+||||+...|-...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999955443
No 397
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.45 E-value=0.47 Score=49.96 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~L 39 (843)
..++++|+.|+|||||++.|
T Consensus 65 e~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 46899999999999999999
No 398
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=84.41 E-value=2.1 Score=39.56 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=21.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..-.+|.+.|.+|+|||+++.++-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999843
No 399
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.35 E-value=0.51 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-..|+|+|+.|+|||||++.|+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999754
No 400
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.27 E-value=3.7 Score=43.20 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.+.|++|+|||||+.++...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999544
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.24 E-value=0.72 Score=46.35 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGI 45 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~ 45 (843)
.+.+.|.++|++||||+|.+..|....|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45677899999999999999999777654
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.22 E-value=0.44 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++|+|+.|||||||++.|.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHh
Confidence 368999999999999999993
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.16 E-value=0.6 Score=46.51 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
+|.++|++||||+|.+..|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 58899999999999999997776643
No 404
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.14 E-value=0.53 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|+++|.+|+||||+...|....|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999965544
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.10 E-value=0.61 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|.+|+||||+...|-...|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965443
No 406
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.05 E-value=0.61 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|++.|.+|+||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999543
No 407
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.01 E-value=0.5 Score=49.02 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=18.2
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003166 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~L 39 (843)
.++++|+.|+|||||++.|
T Consensus 32 ~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 408
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.00 E-value=0.32 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-|+|.|..|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 409
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.95 E-value=0.7 Score=45.32 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...|++.|.+|+||||++..|....|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999965544
No 410
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.95 E-value=0.54 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999543
No 411
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.82 E-value=3.1 Score=47.48 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+.+.+.|++|+|||||+.++....+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999966653
No 412
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.74 E-value=0.64 Score=47.70 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|.++|.+|+||||+...|....+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456899999999999999999966543
No 413
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.69 E-value=0.87 Score=49.18 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
....+|+++|..|+||||+...|....
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 446789999999999999999886543
No 414
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.57 E-value=0.72 Score=47.23 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+...|+|.|.+|+||||++..|....|
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999866545
No 415
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=83.52 E-value=0.5 Score=51.28 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|||||||++.|.
T Consensus 42 e~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999993
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=83.44 E-value=0.5 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 368999999999999999993
No 417
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.44 E-value=0.6 Score=44.86 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|++.|..|+||||+...|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998543
No 418
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.24 E-value=0.67 Score=48.30 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+.++....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 469999999999999999995543
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.22 E-value=0.86 Score=44.79 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
....+|++.|.+||||||+.+.|-...|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567999999999999999999855433
No 420
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.22 E-value=0.72 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHH
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll 40 (843)
....|+|.|.+||||||+++.|-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999995
No 421
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.21 E-value=0.51 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...++|+|+.|+|||||++.|....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999996543
No 422
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.20 E-value=6.9 Score=37.87 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.+.|+.|+|||||+..+...
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999998554
No 423
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=83.07 E-value=0.52 Score=51.24 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHh
Confidence 368999999999999999993
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.04 E-value=0.75 Score=46.43 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
....+|+++|.+|+||||++..|....+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999965544
No 425
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.96 E-value=0.65 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.026 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+-..|+|+|+.|+|||||+++|+..-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34479999999999999999997653
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.96 E-value=0.57 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-|++.|..|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999443
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.89 E-value=0.65 Score=47.79 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
-.+|+++|.+|+||||+...|....|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999965443
No 428
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.82 E-value=0.54 Score=51.34 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|||||||++.|.
T Consensus 30 e~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHH
Confidence 358999999999999999993
No 429
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=82.78 E-value=0.55 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|||||||++.|.
T Consensus 30 e~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCchHHHHHHHHH
Confidence 368999999999999999993
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.78 E-value=0.67 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+|+|+.|+|||||+++|.+.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999764
No 431
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.77 E-value=0.76 Score=48.26 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
....|.++|++|+||||++..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997654
No 432
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.74 E-value=0.72 Score=45.89 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..|+|.|..||||||+++.|-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999843
No 433
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=82.65 E-value=0.56 Score=51.24 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|||||||++.|.
T Consensus 38 e~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHH
Confidence 468999999999999999993
No 434
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.59 E-value=1.4 Score=47.62 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.4
Q ss_pred HhhccCeEEEEEeCCCccchhHH---HHHHHHHcCCCceEEEEEcCCcc
Q 003166 118 ALRITDGALVVVDCIEGVCVQTE---TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 118 ~l~~~D~ailVvda~~gv~~~t~---~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+..+|.+++| ||... ..... +.+..+...++|+++++||+|+.
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~ 173 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLL 173 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGC
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCC
Confidence 35789998866 55543 33333 33344566799999999999987
No 435
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.58 E-value=1.1 Score=45.22 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=27.7
Q ss_pred CeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003166 123 DGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.-+++||-..-........++.+...++++|++.-..|-.
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~ 129 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK 129 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 45688899876554444445555555689999888888854
No 436
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.54 E-value=1 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++.+.|++|+|||||+.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999554
No 437
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.53 E-value=1.6 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+-+.+.|.|++|+|||||+-.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998654
No 438
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.50 E-value=0.68 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|+++|.+|+||||++..|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999654
No 439
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.49 E-value=0.4 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++|+|+.|+|||||++.|+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHH
Confidence 468999999999999999993
No 440
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.47 E-value=0.74 Score=47.01 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.++|++|+|||||+.++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999554
No 441
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.42 E-value=0.88 Score=43.33 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.+.|++|+|||||+.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999554
No 442
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.41 E-value=1.1 Score=43.90 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+++.+.|++|+|||||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999999998654
No 443
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.17 E-value=2.8 Score=43.86 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
....++.+.|++|+|||+|+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988544
No 444
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.71 E-value=3 Score=54.80 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+-++|.+.|++|+|||+|+-++...+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999996653
No 445
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=81.67 E-value=0.64 Score=46.93 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+-..|+|.|..|+|||||++.|..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999843
No 446
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.59 E-value=1.2 Score=44.14 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=24.4
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 9 ~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+...+......+.+.+.|+.|+|||||+..+...
T Consensus 35 l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 35 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3333333333347899999999999999999654
No 447
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.56 E-value=0.89 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|+++|.+|+||||++..|....|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965544
No 448
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.54 E-value=0.7 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|||||||++.|.
T Consensus 48 e~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 368999999999999999993
No 449
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=81.44 E-value=2.2 Score=43.32 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeee
Q 003166 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 796 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
--|++.|.+|.++.+++++.|.+ -|.|..++-.++ +...+.+.+|-----.+...|++.|+|+|...
T Consensus 183 a~m~l~v~ip~~~~~~~~~~l~~-~~~v~~ee~~~d-gs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 183 EKVRVAIKIPGEMAGSAYGVISN-FGKITNEEWQND-GSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHH-HCEEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred eeEEEEEEEcHHHHHHHHHHHHh-hCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 45889999999999999999954 488877775432 34567788998766778899999999999754
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.21 E-value=0.9 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+|++.|.+|+||||++..|....|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999965544
No 451
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.14 E-value=0.88 Score=45.29 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=25.7
Q ss_pred HHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 7 EELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 7 ~~~~~~~~-~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+..++. --.+-..++++|+.|+|||||+..|+..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555553 2233357899999999999999999643
No 452
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=80.81 E-value=0.49 Score=51.23 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
-.++++|+.|||||||++.|.
T Consensus 27 e~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 368999999999999999993
No 453
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.43 E-value=1.1 Score=44.54 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+++.+.|++|+||||++.+|...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999654
No 454
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.31 E-value=0.99 Score=46.88 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++++|++|+|||||+.++...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 46999999999999999999554
No 455
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.27 E-value=0.87 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..++|+|+.|+|||||++.|...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 346999999999999999999654
No 456
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.93 E-value=0.94 Score=44.87 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=20.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
.-..|+++|..|+||||++..|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999854
No 457
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.68 E-value=2.2 Score=46.20 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+-+.+.|.|.+|+|||||+-.|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998764
No 458
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.62 E-value=1.2 Score=45.03 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.....|+++|..|+||||+...|....|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999965444
No 459
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.30 E-value=0.93 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-.+|+|+.|+|||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999754
No 460
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.21 E-value=1 Score=48.28 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=22.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...++++.|++|+|||||+..+....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999966543
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.19 E-value=1.1 Score=46.99 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=21.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+-.-++|+|++|+|||||+..|...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 33446899999999999999998544
No 462
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=79.14 E-value=0.49 Score=51.36 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|||||||++.|.
T Consensus 32 e~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999993
No 463
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.13 E-value=1.6 Score=43.08 Aligned_cols=35 Identities=17% Similarity=0.001 Sum_probs=26.0
Q ss_pred HHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 7 EELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 7 ~~~~~~~~-~~~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.+.+++. --..-..++++|++|+|||||+..|..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555554 333444789999999999999999965
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.10 E-value=1.2 Score=45.34 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
..|+|.|++|+||||++..|....|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965444
No 465
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.09 E-value=1.1 Score=45.78 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.+++.+.|++|+|||||+.++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999554
No 466
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.07 E-value=1.4 Score=45.61 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...+++.+.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 446789999999999999999995543
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.07 E-value=1.4 Score=48.15 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..-+.++++|++|+|||||+..|...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44568999999999999999999654
No 468
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=78.91 E-value=1.8 Score=46.48 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=24.0
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 9 ~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+..+..--.+-.-+.|.|.+|+|||||+-.+...
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344332233346889999999999999988654
No 469
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=78.73 E-value=1.2 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.|+|.|..|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999965544
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.69 E-value=1.5 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+-|+|+|++++|||||+..|....+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45689999999999999999976643
No 471
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.38 E-value=1.4 Score=47.44 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|++|+|||||+..|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999976644
No 472
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.38 E-value=9.3 Score=40.16 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=17.8
Q ss_pred eeEE-EEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNM-SVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI-~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++ .+.|++|+||||++.++...
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3344 45566999999999999554
No 473
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=78.35 E-value=2.6 Score=42.48 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=53.2
Q ss_pred eEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeee
Q 003166 729 VYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 797 (843)
Q Consensus 729 i~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
-|++.|.+|.++.|++++.|. .-|.|..++-.++ +.....+.+|-.---.+...|++.|+|+|.+..
T Consensus 169 ~m~~~v~vp~~~~~~~~~~l~-~~~~v~~ee~~~d-gs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 169 EMEIAIKIPPEHTGRAISALY-NFGGVTREEWQRD-GSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEEECGGGHHHHHHHHH-HHCCEEEEEECTT-SCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEEcHHHHHHHHHHHH-hhCeeeeecccCC-CcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 578899999999999999994 4578887775432 345677889987666778999999999997643
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=78.20 E-value=1 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++|+|+.|+|||||++.|...
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 57899999999999999999654
No 475
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.12 E-value=5.2 Score=43.07 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=35.4
Q ss_pred cCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 122 TDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 122 ~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.+++++|.-+..-....++..+..+.+.++|+. +|+|++.-.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 478999998887677778888899999999987 799998854
No 476
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=78.07 E-value=1.5 Score=44.16 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=22.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..-..|++.|..|+||||+++.|....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999996554
No 477
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.94 E-value=4.1 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-+.+.|.|++|+|||||+-.++...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH
Confidence 4568899999999999999987653
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.67 E-value=1.7 Score=46.89 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...+++.|.|+.|+|||||+..+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999998654
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=77.64 E-value=1.3 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
--.++|+|+.|+|||||+..|....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999997764
No 480
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=77.42 E-value=4.7 Score=34.79 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=47.8
Q ss_pred EeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003166 382 KMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 382 K~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
+++..+..|. +|=|+|.+|+++++..+++++.+ ..+++-++.+|-. ...+|.++.+|.=|+|.
T Consensus 13 ~vF~isk~g~-IAGc~V~~G~i~r~~~vRv~Rd~------~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~ 75 (99)
T 1d1n_A 13 QTFKVSKVGT-IAGCYVTDGKITRDSKVRLIRQG------IVVYEGEIDSLKR----YKDDVREVAQGYECGLT 75 (99)
T ss_dssp CCCCCSSSCC-CEEEEECSSBCCSSSEEEEECSS------SEEEEEECSEEEC----SSSCCSCCBTTCEEEEE
T ss_pred EEEEcCCceE-EEEEEEEcCEEEcCCeEEEEECC------EEEEEeEEhhhcc----cccccceECCCcEEEEE
Confidence 3333455566 99999999999999999998632 2344557777763 66789999999999986
No 481
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.36 E-value=18 Score=43.05 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...++.+.|++|+|||+|+.+|....
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHh
Confidence 34589999999999999999996554
No 482
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.03 E-value=1.8 Score=45.61 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
...+.|.+.|++|+|||||+.++....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 345689999999999999999996543
No 483
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=77.02 E-value=3.1 Score=45.65 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=41.0
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-------hhHHHHHHHHHcCCCc-----eEEEEEcCCc
Q 003166 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGERIR-----PVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-------~~t~~~l~~~~~~~~p-----~ilviNK~D~ 162 (843)
..+.+.|||||.... ..+..++..+|.+|+|+.+..--. .....+++.+...+.+ ++.++|+.|.
T Consensus 246 ~~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 246 DDYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp GGCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred hcCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 467899999999775 557788899999999998743110 1223344444444433 2458999883
No 484
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=76.75 E-value=2.4 Score=45.89 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC
Q 003166 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~ 133 (843)
.+.+.|||||.... ..+..++..||.+|+++.+..
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~~ 187 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATDL 187 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCSH
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCCh
Confidence 68899999997653 557778888999999998864
No 485
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=76.63 E-value=1.3 Score=44.49 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHhhc-ccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 7 EELRRIMD-FKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 7 ~~~~~~~~-~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+..++. -...-..++++|++|+|||||+..|+..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44566653 2233457899999999999999999653
No 486
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.59 E-value=1.6 Score=46.54 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
+.|+|+|++|+|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999976543
No 487
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.94 E-value=12 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++.+.|++|+|||+|+.+|...
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999654
No 488
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=75.90 E-value=1.4 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+.|.++|.+|+||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 489
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.54 E-value=0.9 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=17.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
...|+|.|.+||||||+++.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999954
No 490
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.10 E-value=1.7 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++|+|+.|+|||||+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999965
No 491
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=75.04 E-value=1.6 Score=48.65 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+--.++|+|+.|+|||||++.|....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 333479999999999999999997664
No 492
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=74.78 E-value=11 Score=42.04 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.++.+.|++|+|||||+..+....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 44789999999999999999996554
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=74.68 E-value=1.6 Score=43.11 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 003166 21 NMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
-.+|+|+.|+||||+++++.+..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999999999997654
No 494
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.56 E-value=1.8 Score=46.30 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHH
Q 003166 17 HNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
.+..++.+.|+.|+|||||+..|..
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999966
No 495
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=74.21 E-value=1.6 Score=50.79 Aligned_cols=21 Identities=19% Similarity=0.476 Sum_probs=19.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll 40 (843)
..++++|+.|+|||||++.|.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999993
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=74.14 E-value=1.5 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
..++++|+.|+|||||++.|..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999943
No 497
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=74.13 E-value=8.2 Score=38.73 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=46.0
Q ss_pred CceEEEEEcCCCCc-----cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003166 96 NEYLINLIDSPGHV-----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~-----df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
..+.+.+||+||.. +......-+-.....+|+|+++..|-..++...++.+...++++. +++|++|..
T Consensus 109 ~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 109 QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 46779999999742 111112222233456899999988766666666677777888877 799999854
No 498
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.12 E-value=1.9 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003166 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.|++.|..|+||||+++.|....
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 579999999999999999996553
No 499
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=74.05 E-value=2.2 Score=45.28 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003166 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...++.+.|++|+|||||+.++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999554
No 500
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=74.05 E-value=1.4 Score=51.12 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003166 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
-..++++|+.|+|||||++.|..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999943
Done!