Query 003167
Match_columns 843
No_of_seqs 577 out of 3794
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.9E-92 6.5E-97 861.9 53.7 706 2-766 58-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 3.3E-41 1.1E-45 372.3 30.8 306 2-333 67-380 (389)
3 3hsy_A Glutamate receptor 2; l 100.0 1.4E-41 4.7E-46 374.0 27.3 308 2-332 58-373 (376)
4 4gpa_A Glutamate receptor 4; P 100.0 4.6E-41 1.6E-45 372.4 30.2 311 2-337 67-382 (389)
5 3h6g_A Glutamate receptor, ion 100.0 2E-40 6.7E-45 367.9 25.5 306 2-335 69-385 (395)
6 3saj_A Glutamate receptor 1; r 100.0 3.1E-40 1.1E-44 364.5 26.6 308 2-336 65-380 (384)
7 1jdp_A NPR-C, atrial natriuret 100.0 2.5E-39 8.6E-44 364.4 31.8 297 3-329 83-397 (441)
8 3om0_A Glutamate receptor, ion 100.0 8.1E-40 2.8E-44 362.6 25.6 305 2-334 68-382 (393)
9 4f11_A Gamma-aminobutyric acid 100.0 4E-39 1.4E-43 362.0 27.1 322 3-364 84-424 (433)
10 2e4u_A Metabotropic glutamate 100.0 2.6E-38 8.9E-43 365.5 34.4 322 2-369 115-485 (555)
11 3sm9_A Mglur3, metabotropic gl 100.0 7.1E-39 2.4E-43 362.2 28.7 299 3-325 115-462 (479)
12 3ks9_A Mglur1, metabotropic gl 100.0 1.6E-38 5.3E-43 361.0 29.8 324 2-367 126-496 (496)
13 3qek_A NMDA glutamate receptor 100.0 1.1E-38 3.7E-43 352.4 25.4 281 2-326 63-369 (384)
14 1dp4_A Atrial natriuretic pept 100.0 3.2E-38 1.1E-42 355.0 26.5 319 3-369 76-423 (435)
15 3mq4_A Mglur7, metabotropic gl 100.0 3.5E-38 1.2E-42 357.6 17.9 301 3-325 116-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 9.3E-38 3.2E-42 340.0 20.5 282 3-332 62-356 (364)
17 4f06_A Extracellular ligand-bi 100.0 9.2E-31 3.1E-35 287.2 24.3 275 2-314 70-347 (371)
18 3i45_A Twin-arginine transloca 100.0 6.3E-31 2.2E-35 290.6 22.7 292 3-336 72-369 (387)
19 3td9_A Branched chain amino ac 100.0 1.5E-30 5.1E-35 285.4 25.3 278 3-327 80-363 (366)
20 3i09_A Periplasmic branched-ch 100.0 2.9E-30 1E-34 284.0 23.7 271 3-316 70-342 (375)
21 3ipc_A ABC transporter, substr 100.0 5.9E-30 2E-34 279.5 24.6 282 2-327 67-352 (356)
22 3h5l_A Putative branched-chain 100.0 1.4E-30 4.7E-35 291.1 19.7 286 2-324 81-394 (419)
23 3n0w_A ABC branched chain amin 100.0 5.1E-30 1.8E-34 282.4 22.8 273 3-317 72-347 (379)
24 1usg_A Leucine-specific bindin 100.0 2.2E-29 7.4E-34 273.8 23.0 276 2-321 67-345 (346)
25 4evq_A Putative ABC transporte 100.0 4.1E-29 1.4E-33 274.9 25.5 281 3-327 81-364 (375)
26 3hut_A Putative branched-chain 100.0 3.6E-29 1.2E-33 273.5 24.7 280 2-326 70-353 (358)
27 4eyg_A Twin-arginine transloca 100.0 3.3E-29 1.1E-33 274.9 22.7 283 2-325 70-358 (368)
28 3eaf_A ABC transporter, substr 100.0 4.6E-28 1.6E-32 267.9 24.7 286 2-328 74-373 (391)
29 3lop_A Substrate binding perip 100.0 4.1E-28 1.4E-32 265.7 22.8 278 3-322 72-358 (364)
30 3n0x_A Possible substrate bind 100.0 1.4E-28 4.9E-33 270.2 18.7 270 2-317 71-349 (374)
31 3lkb_A Probable branched-chain 100.0 2.5E-28 8.6E-33 270.3 20.4 289 3-331 74-379 (392)
32 3sg0_A Extracellular ligand-bi 100.0 2E-27 6.8E-32 262.5 20.6 283 3-321 88-385 (386)
33 3snr_A Extracellular ligand-bi 99.9 8.9E-27 3E-31 254.8 24.6 280 3-320 68-360 (362)
34 4gnr_A ABC transporter substra 99.9 6.9E-27 2.4E-31 254.8 23.0 272 2-323 73-350 (353)
35 1yae_A Glutamate receptor, ion 99.9 9.2E-28 3.2E-32 256.7 15.4 272 372-732 10-304 (312)
36 1pea_A Amidase operon; gene re 99.9 5E-26 1.7E-30 251.1 26.7 283 2-324 73-357 (385)
37 3g3k_A Glutamate receptor, ion 99.9 9.6E-26 3.3E-30 234.2 15.6 235 373-719 2-258 (259)
38 1pb7_A N-methyl-D-aspartate re 99.9 2.4E-26 8.1E-31 242.9 11.0 236 375-720 41-292 (292)
39 2a5s_A N-methyl-D-aspartate re 99.9 3.6E-26 1.2E-30 240.6 7.9 241 371-719 25-283 (284)
40 4h5g_A Amino acid ABC superfam 99.9 1.1E-24 3.9E-29 223.7 18.6 220 375-714 12-237 (243)
41 2rc8_A Glutamate [NMDA] recept 99.9 7.9E-25 2.7E-29 231.6 13.0 215 399-719 67-293 (294)
42 4gvo_A LMO2349 protein; struct 99.9 1.8E-24 6.2E-29 222.2 14.7 223 373-714 7-235 (243)
43 3kzg_A Arginine 3RD transport 99.9 1.8E-23 6E-28 213.9 18.4 218 375-715 3-231 (237)
44 2v3u_A Glutamate receptor delt 99.9 2.1E-23 7.1E-28 217.2 18.1 235 373-719 1-264 (265)
45 1mqi_A Glutamate receptor 2; G 99.9 3.1E-23 1.1E-27 215.7 17.5 232 374-719 3-262 (263)
46 4f3p_A Glutamine-binding perip 99.9 6.9E-23 2.4E-27 211.2 19.5 221 372-715 21-243 (249)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 2.7E-23 9.3E-28 211.8 16.2 220 374-723 4-226 (232)
48 3k4u_A Binding component of AB 99.9 6.6E-23 2.3E-27 210.7 18.4 222 374-714 4-228 (245)
49 3del_B Arginine binding protei 99.9 9.9E-23 3.4E-27 208.9 18.5 222 374-720 10-238 (242)
50 3hv1_A Polar amino acid ABC up 99.9 1.7E-22 5.7E-27 210.8 18.4 225 373-718 19-252 (268)
51 3kbr_A Cyclohexadienyl dehydra 99.9 9E-23 3.1E-27 208.8 15.8 221 374-714 14-237 (239)
52 3tql_A Arginine-binding protei 99.9 4.4E-22 1.5E-26 201.6 18.8 218 375-713 2-227 (227)
53 2h4a_A YRAM (HI1655); perplasm 99.9 1.3E-22 4.6E-27 215.5 15.4 256 2-317 54-314 (325)
54 3ckm_A YRAM (HI1655), LPOA; pe 99.9 4E-22 1.4E-26 214.2 17.8 261 2-322 56-320 (327)
55 1ii5_A SLR1257 protein; membra 99.9 8.5E-22 2.9E-26 200.4 19.4 218 374-714 3-226 (233)
56 4eq9_A ABC transporter substra 99.9 5.5E-22 1.9E-26 203.8 16.5 223 374-717 7-238 (246)
57 1lst_A Lysine, arginine, ornit 99.9 1.5E-21 5.2E-26 199.5 18.0 221 374-714 3-232 (239)
58 3h7m_A Sensor protein; histidi 99.9 1.7E-21 5.8E-26 198.4 17.7 219 373-714 9-230 (234)
59 3mpk_A Virulence sensor protei 99.9 2E-21 6.7E-26 202.6 18.2 219 373-714 30-252 (267)
60 1wdn_A GLNBP, glutamine bindin 99.9 3.1E-21 1.1E-25 195.2 18.4 217 375-714 3-222 (226)
61 2y7i_A STM4351; arginine-bindi 99.9 6.8E-21 2.3E-25 193.3 19.6 218 373-714 4-228 (229)
62 4dz1_A DALS D-alanine transpor 99.9 3.9E-21 1.3E-25 199.3 17.4 222 373-714 27-253 (259)
63 2iee_A ORF2, probable ABC tran 99.9 1.7E-21 5.9E-26 203.5 13.1 218 373-714 19-246 (271)
64 2pvu_A ARTJ; basic amino acid 99.8 2.1E-20 7.2E-25 195.3 19.1 241 351-714 15-262 (272)
65 2q88_A EHUB, putative ABC tran 99.8 1.2E-20 4.1E-25 195.3 16.2 221 374-713 12-239 (257)
66 3qax_A Probable ABC transporte 99.8 3E-20 1E-24 193.4 18.4 218 373-714 29-253 (268)
67 2pyy_A Ionotropic glutamate re 99.8 1.8E-20 6.3E-25 189.8 15.6 218 375-714 3-222 (228)
68 4i62_A Amino acid ABC transpor 99.8 3.7E-20 1.3E-24 192.8 17.5 220 374-714 38-264 (269)
69 2yjp_A Putative ABC transporte 99.8 4.4E-20 1.5E-24 194.9 16.7 217 375-714 55-276 (291)
70 1xt8_A Putative amino-acid tra 99.8 4.4E-20 1.5E-24 195.0 16.7 218 374-714 43-265 (292)
71 2yln_A Putative ABC transporte 99.8 6.5E-20 2.2E-24 192.7 16.3 216 374-714 56-277 (283)
72 2vha_A Periplasmic binding tra 99.8 7.7E-20 2.6E-24 192.7 16.5 222 374-714 16-248 (287)
73 2v25_A Major cell-binding fact 99.7 4.5E-18 1.5E-22 175.8 12.6 215 374-713 37-258 (259)
74 3n5l_A Binding protein compone 98.9 3.3E-09 1.1E-13 111.9 11.7 215 374-713 3-242 (310)
75 3p7i_A PHND, subunit of alkylp 98.8 1.9E-08 6.5E-13 106.3 13.8 215 373-712 12-250 (321)
76 2ozz_A Hypothetical protein YH 98.7 2.2E-08 7.4E-13 98.3 9.0 183 397-714 27-224 (231)
77 3uif_A Sulfonate ABC transport 97.9 4.9E-05 1.7E-09 81.4 12.7 107 591-699 110-228 (348)
78 3ksx_A Nitrate transport prote 97.9 9.5E-05 3.3E-09 78.2 14.3 93 590-685 121-219 (324)
79 2x26_A Periplasmic aliphatic s 97.9 9.3E-05 3.2E-09 77.7 13.9 121 591-714 96-232 (308)
80 2f5x_A BUGD; periplasmic bindi 97.9 0.00024 8.1E-09 74.1 15.8 121 590-712 121-275 (312)
81 3un6_A Hypothetical protein sa 97.8 4.9E-05 1.7E-09 81.2 9.0 123 590-714 143-283 (341)
82 2qpq_A Protein BUG27; alpha/be 97.7 0.00044 1.5E-08 71.8 15.3 121 590-712 112-266 (301)
83 2dvz_A BUGE, putative exported 97.7 0.00031 1.1E-08 73.3 14.2 121 590-712 125-279 (314)
84 3qsl_A Putative exported prote 97.6 0.00046 1.6E-08 73.5 13.7 137 412-663 59-205 (346)
85 3ix1_A N-formyl-4-amino-5-amin 97.5 0.00029 1E-08 73.6 10.4 78 398-483 15-96 (302)
86 2h3h_A Sugar ABC transporter, 97.2 0.0024 8.1E-08 66.9 13.2 144 3-156 56-206 (313)
87 2h0a_A TTHA0807, transcription 97.2 0.0015 5E-08 67.1 10.9 152 3-166 54-214 (276)
88 3brq_A HTH-type transcriptiona 97.0 0.0023 7.9E-08 66.2 10.1 153 3-165 76-233 (296)
89 4ddd_A Immunogenic protein; ss 96.9 0.0015 5.2E-08 68.8 8.4 61 591-653 137-203 (327)
90 2qu7_A Putative transcriptiona 96.9 0.0014 4.7E-08 67.8 7.8 151 3-165 62-220 (288)
91 2rjo_A Twin-arginine transloca 96.9 0.011 3.9E-07 62.2 14.8 148 5-157 64-222 (332)
92 2x7q_A Ca3427, possible thiami 96.9 0.0045 1.5E-07 65.1 11.5 108 590-702 110-236 (321)
93 1dbq_A Purine repressor; trans 96.8 0.0063 2.2E-07 62.7 11.8 154 3-165 62-220 (289)
94 3d02_A Putative LACI-type tran 96.8 0.016 5.4E-07 60.1 14.9 146 3-157 60-214 (303)
95 3rot_A ABC sugar transporter, 96.8 0.0041 1.4E-07 64.5 10.0 155 3-165 60-222 (297)
96 3brs_A Periplasmic binding pro 96.8 0.01 3.4E-07 61.1 12.7 152 3-165 64-222 (289)
97 3clk_A Transcription regulator 96.7 0.0052 1.8E-07 63.5 10.1 153 2-165 63-218 (290)
98 3c3k_A Alanine racemase; struc 96.7 0.018 6.1E-07 59.2 14.0 150 2-165 62-217 (285)
99 2hsg_A Glucose-resistance amyl 96.6 0.0057 1.9E-07 64.6 9.9 154 2-165 114-272 (332)
100 3bbl_A Regulatory protein of L 96.6 0.0094 3.2E-07 61.4 11.3 154 2-165 62-221 (287)
101 1tjy_A Sugar transport protein 96.6 0.018 6E-07 60.3 13.4 145 3-157 59-213 (316)
102 2rgy_A Transcriptional regulat 96.6 0.0051 1.8E-07 63.5 9.0 153 3-165 66-222 (290)
103 2iks_A DNA-binding transcripti 96.6 0.012 3.9E-07 60.9 11.5 152 3-165 75-230 (293)
104 3d8u_A PURR transcriptional re 96.6 0.016 5.5E-07 59.0 12.5 151 3-165 58-214 (275)
105 3k4h_A Putative transcriptiona 96.5 0.0093 3.2E-07 61.5 10.6 154 3-165 68-225 (292)
106 2o20_A Catabolite control prot 96.5 0.0068 2.3E-07 64.0 9.6 154 3-166 118-273 (332)
107 3l49_A ABC sugar (ribose) tran 96.5 0.018 6E-07 59.3 12.6 146 3-157 60-216 (291)
108 2x7x_A Sensor protein; transfe 96.5 0.027 9.3E-07 59.1 14.1 153 3-166 61-221 (325)
109 3cs3_A Sugar-binding transcrip 96.5 0.028 9.4E-07 57.4 13.8 133 22-166 74-211 (277)
110 2fvy_A D-galactose-binding per 96.5 0.018 6.1E-07 59.8 12.3 150 3-155 58-226 (309)
111 3gbv_A Putative LACI-family tr 96.4 0.01 3.5E-07 61.6 10.3 155 2-167 67-232 (304)
112 3g85_A Transcriptional regulat 96.4 0.023 8E-07 58.3 13.0 153 2-166 66-222 (289)
113 3dbi_A Sugar-binding transcrip 96.4 0.0092 3.1E-07 63.1 9.9 154 3-165 118-275 (338)
114 3gyb_A Transcriptional regulat 96.4 0.008 2.7E-07 61.6 9.1 150 2-165 58-209 (280)
115 3ksm_A ABC-type sugar transpor 96.4 0.026 9E-07 57.4 13.0 150 5-165 60-219 (276)
116 2fn9_A Ribose ABC transporter, 96.4 0.022 7.4E-07 58.6 12.4 144 3-156 57-215 (290)
117 2k1e_A Water soluble analogue 96.4 0.0021 7.2E-08 54.6 3.8 78 506-587 18-97 (103)
118 3gv0_A Transcriptional regulat 96.4 0.023 7.9E-07 58.4 12.4 136 21-165 82-221 (288)
119 2g29_A Nitrate transport prote 96.4 0.013 4.4E-07 64.0 10.9 103 596-701 151-272 (417)
120 2fep_A Catabolite control prot 96.3 0.015 5.1E-07 59.9 10.8 153 3-165 71-228 (289)
121 3hcw_A Maltose operon transcri 96.3 0.048 1.6E-06 56.2 14.7 153 3-166 67-226 (295)
122 3h75_A Periplasmic sugar-bindi 96.3 0.047 1.6E-06 57.9 14.7 159 3-165 61-238 (350)
123 2ioy_A Periplasmic sugar-bindi 96.2 0.052 1.8E-06 55.5 14.1 151 3-165 56-214 (283)
124 1zbm_A Hypothetical protein AF 96.2 0.026 8.9E-07 57.8 11.5 99 596-702 99-210 (280)
125 3o1i_D Periplasmic protein TOR 96.1 0.015 5.1E-07 60.3 9.3 147 4-157 63-218 (304)
126 2ih3_C Voltage-gated potassium 96.1 0.0071 2.4E-07 53.1 5.5 74 509-586 42-117 (122)
127 3g1w_A Sugar ABC transporter; 96.0 0.074 2.5E-06 55.0 14.4 156 3-167 60-221 (305)
128 3o74_A Fructose transport syst 96.0 0.017 5.7E-07 58.8 9.2 151 3-165 57-212 (272)
129 3k9c_A Transcriptional regulat 96.0 0.059 2E-06 55.3 13.0 152 2-165 64-218 (289)
130 3l6u_A ABC-type sugar transpor 95.9 0.075 2.6E-06 54.5 13.6 145 3-157 63-220 (293)
131 3egc_A Putative ribose operon 95.9 0.014 4.7E-07 60.2 7.8 153 3-165 63-219 (291)
132 3ctp_A Periplasmic binding pro 95.9 0.0098 3.3E-07 62.7 6.7 147 3-165 115-264 (330)
133 1qpz_A PURA, protein (purine n 95.9 0.041 1.4E-06 58.1 11.6 152 3-165 113-271 (340)
134 8abp_A L-arabinose-binding pro 95.8 0.032 1.1E-06 57.8 10.5 158 3-165 56-229 (306)
135 2vk2_A YTFQ, ABC transporter p 95.8 0.072 2.5E-06 55.2 13.0 156 3-165 57-224 (306)
136 3eff_K Voltage-gated potassium 95.6 0.022 7.5E-07 51.3 7.1 72 510-585 22-95 (139)
137 3qk7_A Transcriptional regulat 95.6 0.036 1.2E-06 57.1 9.8 152 3-165 64-220 (294)
138 3lft_A Uncharacterized protein 95.6 0.16 5.3E-06 52.3 14.6 142 2-156 60-210 (295)
139 2a9h_A Voltage-gated potassium 95.6 0.019 6.4E-07 52.6 6.5 76 509-588 65-142 (155)
140 2dri_A D-ribose-binding protei 95.6 0.2 7E-06 50.6 15.2 145 2-156 55-206 (271)
141 3kjx_A Transcriptional regulat 95.6 0.031 1.1E-06 59.2 9.3 152 3-166 123-281 (344)
142 3jy6_A Transcriptional regulat 95.5 0.074 2.5E-06 54.1 11.6 150 3-166 62-215 (276)
143 3kke_A LACI family transcripti 95.4 0.051 1.7E-06 56.3 10.0 151 3-165 70-230 (303)
144 3bil_A Probable LACI-family tr 95.3 0.088 3E-06 55.7 11.6 151 3-165 121-274 (348)
145 3oxn_A Putative transcriptiona 95.2 0.24 8.2E-06 48.7 14.0 188 374-694 18-210 (241)
146 2qh8_A Uncharacterized protein 95.2 0.092 3.2E-06 54.3 11.2 140 3-155 68-216 (302)
147 1jx6_A LUXP protein; protein-l 95.1 0.065 2.2E-06 56.5 9.9 149 3-156 103-258 (342)
148 4fe7_A Xylose operon regulator 95.0 0.13 4.6E-06 55.8 12.4 157 3-166 75-237 (412)
149 3tb6_A Arabinose metabolism tr 95.0 0.038 1.3E-06 56.9 7.5 157 3-166 70-235 (298)
150 3jv9_A OXYR, transcriptional r 94.9 0.27 9.3E-06 47.2 13.1 191 375-698 4-205 (219)
151 4ab5_A Transcriptional regulat 94.8 0.32 1.1E-05 46.9 13.3 195 374-699 7-205 (222)
152 3ho7_A OXYR; beta-alpha-barrel 94.7 0.3 1E-05 47.5 13.1 195 374-699 10-210 (232)
153 1gud_A ALBP, D-allose-binding 94.7 0.41 1.4E-05 48.8 14.4 159 2-166 57-226 (288)
154 1byk_A Protein (trehalose oper 94.7 0.19 6.6E-06 50.2 11.5 120 23-156 74-196 (255)
155 3ixl_A Amdase, arylmalonate de 94.6 0.33 1.1E-05 48.0 12.8 82 59-143 104-192 (240)
156 1jye_A Lactose operon represso 94.6 0.24 8.3E-06 52.3 12.7 150 3-166 117-272 (349)
157 3e61_A Putative transcriptiona 94.6 0.076 2.6E-06 54.0 8.3 145 3-166 63-211 (277)
158 4h33_A LMO2059 protein; bilaye 94.5 0.058 2E-06 48.2 6.3 56 531-586 42-99 (137)
159 2i49_A Bicarbonate transporter 94.4 0.13 4.5E-06 56.0 10.2 106 595-701 153-280 (429)
160 3m9w_A D-xylose-binding peripl 94.3 0.3 1E-05 50.5 12.5 146 3-157 57-213 (313)
161 3e3m_A Transcriptional regulat 94.3 0.27 9.3E-06 52.0 12.3 139 20-166 141-284 (355)
162 3huu_A Transcription regulator 94.2 0.18 6.2E-06 52.0 10.5 148 3-165 82-235 (305)
163 3fzv_A Probable transcriptiona 94.2 0.67 2.3E-05 47.4 14.9 192 374-697 94-292 (306)
164 1us5_A Putative GLUR0 ligand b 94.1 0.14 4.9E-06 53.1 9.3 60 591-652 122-187 (314)
165 2zzv_A ABC transporter, solute 94.0 0.21 7.3E-06 53.0 10.7 59 590-656 164-222 (361)
166 3h5o_A Transcriptional regulat 93.9 0.18 6E-06 53.1 9.8 151 3-166 117-273 (339)
167 3jvd_A Transcriptional regulat 93.9 0.41 1.4E-05 50.1 12.6 132 22-165 130-264 (333)
168 3hs3_A Ribose operon repressor 93.6 0.15 5.2E-06 51.8 8.3 128 23-166 80-212 (277)
169 2fqx_A Membrane lipoprotein TM 93.6 0.78 2.7E-05 47.6 13.8 154 3-166 61-221 (318)
170 2pfz_A Putative exported prote 93.3 0.53 1.8E-05 48.5 11.9 87 590-685 128-215 (301)
171 3ldc_A Calcium-gated potassium 93.2 0.18 6.1E-06 40.4 6.2 52 532-583 28-81 (82)
172 2pfy_A Putative exported prote 93.1 0.54 1.8E-05 48.4 11.6 87 590-685 129-216 (301)
173 2ql3_A Probable transcriptiona 92.9 1.9 6.6E-05 40.8 14.8 84 374-483 4-87 (209)
174 4gx0_A TRKA domain protein; me 92.9 0.31 1.1E-05 55.4 10.2 123 532-658 51-184 (565)
175 4esw_A Pyrimidine biosynthesis 92.8 0.37 1.3E-05 50.7 10.1 67 590-659 101-170 (342)
176 3ouf_A Potassium channel prote 92.6 0.12 4.2E-06 42.9 4.7 58 532-589 32-91 (97)
177 2hxr_A HTH-type transcriptiona 92.5 2.8 9.7E-05 40.6 15.7 83 375-483 30-112 (238)
178 2fyi_A HTH-type transcriptiona 92.3 4 0.00014 39.3 16.3 196 374-701 13-214 (228)
179 2hzl_A Trap-T family sorbitol/ 92.2 0.48 1.6E-05 50.4 9.9 87 590-685 163-252 (365)
180 1atg_A MODA, periplasmic molyb 92.1 0.56 1.9E-05 45.5 9.7 70 405-483 15-90 (231)
181 2esn_A Probable transcriptiona 92.0 2.9 9.9E-05 42.7 15.6 190 375-698 101-300 (310)
182 3pjs_K KCSA, voltage-gated pot 91.9 0.015 5.3E-07 54.1 -2.0 73 511-587 50-124 (166)
183 3r26_A Molybdate-binding perip 91.9 1.8 6.2E-05 42.5 13.2 114 591-712 106-232 (237)
184 1sw5_A Osmoprotection protein 91.8 0.63 2.2E-05 47.2 9.9 106 591-700 124-238 (275)
185 2q67_A Potassium channel prote 91.8 0.26 9E-06 42.3 5.9 54 532-585 49-104 (114)
186 3h5t_A Transcriptional regulat 91.8 0.42 1.4E-05 50.7 9.0 136 22-165 145-301 (366)
187 3gzg_A Molybdate-binding perip 91.8 1.6 5.4E-05 43.5 12.7 113 591-712 119-248 (253)
188 1p7b_A Integral membrane chann 91.6 0.2 7E-06 51.9 5.9 60 529-588 93-154 (333)
189 2y7p_A LYSR-type regulatory pr 91.6 2.6 9E-05 40.4 13.9 84 374-483 7-90 (218)
190 3miz_A Putative transcriptiona 91.4 0.062 2.1E-06 55.5 1.8 139 21-165 85-230 (301)
191 1xl4_A Inward rectifier potass 91.2 0.32 1.1E-05 49.8 6.8 61 527-587 77-139 (301)
192 1i6a_A OXYR, hydrogen peroxide 90.9 0.18 6.3E-06 48.8 4.6 83 375-483 5-87 (219)
193 3vou_A ION transport 2 domain 90.9 0.4 1.4E-05 43.4 6.5 54 532-585 52-107 (148)
194 3uug_A Multiple sugar-binding 90.7 1.2 4.3E-05 46.1 11.2 150 4-160 59-232 (330)
195 1al3_A Cys regulon transcripti 90.5 7.4 0.00025 40.0 17.0 205 375-713 93-304 (324)
196 3fxq_A LYSR type regulator of 90.4 2.5 8.5E-05 43.1 13.1 85 375-483 92-176 (305)
197 2hqb_A Transcriptional activat 90.0 5.5 0.00019 40.5 15.2 140 3-155 62-204 (296)
198 1orq_C Potassium channel; volt 89.9 0.47 1.6E-05 46.4 6.6 73 509-585 146-220 (223)
199 1ixc_A CBNR, LYSR-type regulat 89.5 4.7 0.00016 40.6 14.3 84 374-483 90-173 (294)
200 1lnq_A MTHK channels, potassiu 89.4 0.2 7E-06 52.6 3.7 123 532-659 45-170 (336)
201 2de3_A Dibenzothiophene desulf 89.2 2.7 9.3E-05 44.4 12.4 120 590-714 109-299 (365)
202 3lkv_A Uncharacterized conserv 88.7 2.2 7.4E-05 43.8 10.9 129 2-142 67-204 (302)
203 2h98_A HTH-type transcriptiona 87.7 15 0.0005 37.5 16.7 82 376-483 91-172 (313)
204 3qi7_A Putative transcriptiona 87.3 1.8 6E-05 45.3 9.0 150 3-158 86-251 (371)
205 3bfj_A 1,3-propanediol oxidore 86.2 4.8 0.00016 42.9 12.1 88 62-151 23-114 (387)
206 1uth_A LYSR-type regulatory pr 85.9 7.4 0.00025 39.8 13.2 83 375-483 105-187 (315)
207 3beh_A MLL3241 protein; transm 85.5 0.62 2.1E-05 49.3 4.6 73 509-585 142-216 (355)
208 3hn0_A Nitrate transport prote 85.4 2 6.7E-05 43.6 8.2 62 601-663 95-161 (283)
209 1xs5_A 29 kDa protein, membran 84.9 17 0.00059 35.5 14.5 118 590-712 90-232 (241)
210 2qks_A KIR3.1-prokaryotic KIR 84.6 1.5 5.3E-05 45.1 6.9 56 532-587 78-135 (321)
211 2h9b_A HTH-type transcriptiona 84.0 27 0.00091 35.3 16.5 82 376-483 91-172 (312)
212 3ox4_A Alcohol dehydrogenase 2 83.7 3 0.0001 44.4 9.0 90 61-152 20-111 (383)
213 2xwv_A Sialic acid-binding per 83.6 5.7 0.00019 40.8 10.8 88 590-685 133-221 (312)
214 3l6g_A Betaine ABC transporter 83.5 3.8 0.00013 40.8 9.2 98 583-685 88-199 (256)
215 1twy_A ABC transporter, peripl 83.2 31 0.0011 34.0 16.5 71 404-483 42-113 (290)
216 2hpg_A ABC transporter, peripl 82.9 3.3 0.00011 43.0 8.8 88 590-685 148-236 (327)
217 2xed_A Putative maleate isomer 82.7 6.1 0.00021 39.6 10.4 80 60-142 134-219 (273)
218 2r9r_B Paddle chimera voltage 82.2 2.3 7.9E-05 47.2 7.6 72 510-585 357-430 (514)
219 3tmg_A Glycine betaine, L-prol 81.6 6.9 0.00024 39.4 10.4 97 583-685 102-216 (280)
220 2rin_A Putative glycine betain 81.4 3.3 0.00011 42.3 8.0 66 591-657 104-183 (298)
221 1r9l_A Glycine betaine-binding 80.4 5.2 0.00018 41.1 9.1 67 591-658 107-194 (309)
222 2vpn_A Periplasmic substrate b 79.4 3.8 0.00013 42.2 7.8 88 590-685 130-218 (316)
223 3onm_A Transcriptional regulat 79.3 44 0.0015 31.8 15.6 82 374-483 26-107 (238)
224 3k6v_A Solute-binding protein 78.6 50 0.0017 34.3 16.0 70 405-483 58-133 (354)
225 3hhf_B Transcriptional regulat 78.5 3.4 0.00012 39.0 6.7 81 374-483 6-86 (213)
226 1rrm_A Lactaldehyde reductase; 76.8 3.6 0.00012 43.8 6.8 101 47-152 9-111 (386)
227 3s99_A Basic membrane lipoprot 76.6 21 0.0007 37.3 12.4 143 2-156 84-230 (356)
228 2dgd_A 223AA long hypothetical 75.6 9.3 0.00032 36.9 8.9 80 60-142 96-182 (223)
229 1nh8_A ATP phosphoribosyltrans 75.6 12 0.0004 37.7 9.5 102 591-700 120-224 (304)
230 1vlj_A NADH-dependent butanol 75.5 6.9 0.00024 41.9 8.6 88 62-151 33-123 (407)
231 2czl_A Hypothetical protein TT 75.2 8.1 0.00028 38.5 8.7 59 595-657 91-150 (272)
232 4edp_A ABC transporter, substr 75.0 36 0.0012 34.9 14.1 82 630-711 215-298 (351)
233 3ukm_A Potassium channel subfa 74.8 2.8 9.6E-05 42.0 4.8 67 532-598 201-276 (280)
234 3m9w_A D-xylose-binding peripl 74.6 10 0.00034 38.7 9.4 79 73-156 3-84 (313)
235 1o2d_A Alcohol dehydrogenase, 74.3 15 0.0005 38.8 10.6 99 47-151 19-120 (371)
236 4dik_A Flavoprotein; TM0755, e 74.0 17 0.00057 38.9 11.1 93 72-171 265-365 (410)
237 2xxp_A CPS2A; replication, pep 73.8 4.8 0.00016 42.8 6.6 67 589-660 25-97 (398)
238 3cij_A UPF0100 protein AF_0094 73.1 79 0.0027 31.5 16.6 70 405-483 20-95 (295)
239 3muq_A Uncharacterized conserv 72.6 63 0.0022 31.3 13.9 74 401-483 18-94 (237)
240 1mkz_A Molybdenum cofactor bio 72.2 17 0.00057 33.5 9.2 65 72-140 10-78 (172)
241 3uhj_A Probable glycerol dehyd 71.9 5.2 0.00018 42.5 6.4 81 63-149 44-126 (387)
242 3kos_A HTH-type transcriptiona 71.8 26 0.00088 32.9 11.1 105 592-698 95-202 (219)
243 3g1w_A Sugar ABC transporter; 71.5 8.2 0.00028 39.1 7.8 80 73-156 5-87 (305)
244 1p99_A Hypothetical protein PG 70.5 14 0.00048 37.5 9.1 27 590-617 126-152 (295)
245 3cfz_A UPF0100 protein MJ1186; 67.6 74 0.0025 31.8 14.0 70 405-483 20-95 (292)
246 3cfx_A UPF0100 protein MA_0280 67.5 58 0.002 32.6 13.2 70 405-483 20-95 (296)
247 3l49_A ABC sugar (ribose) tran 66.1 16 0.00054 36.5 8.6 79 73-156 6-87 (291)
248 3h75_A Periplasmic sugar-bindi 66.0 12 0.00042 38.7 7.9 81 71-156 2-87 (350)
249 1h3d_A ATP-phosphoribosyltrans 65.6 39 0.0013 33.9 10.8 100 591-700 115-218 (299)
250 3gbv_A Putative LACI-family tr 65.2 17 0.00059 36.5 8.7 84 71-156 7-95 (304)
251 1jq5_A Glycerol dehydrogenase; 64.4 18 0.00061 38.1 8.7 108 47-167 10-119 (370)
252 4ef1_A Pheromone COB1/lipoprot 63.7 74 0.0025 31.0 12.1 65 590-656 91-180 (246)
253 3ce9_A Glycerol dehydrogenase; 63.1 21 0.00073 37.2 9.0 109 47-168 12-122 (354)
254 3jy6_A Transcriptional regulat 63.0 15 0.0005 36.5 7.5 79 71-156 6-86 (276)
255 3tb6_A Arabinose metabolism tr 62.8 19 0.00066 36.0 8.5 79 73-156 16-100 (298)
256 8abp_A L-arabinose-binding pro 62.8 21 0.00071 36.0 8.8 78 73-156 3-83 (306)
257 1tjy_A Sugar transport protein 62.4 10 0.00035 38.8 6.3 80 73-156 4-86 (316)
258 3uug_A Multiple sugar-binding 61.7 19 0.00066 36.8 8.3 79 73-156 4-85 (330)
259 3d02_A Putative LACI-type tran 61.7 17 0.00058 36.6 7.8 80 73-156 5-87 (303)
260 3o74_A Fructose transport syst 61.1 8.4 0.00029 38.2 5.2 79 73-156 3-83 (272)
261 3cvg_A Putative metal binding 59.5 1.3E+02 0.0044 30.0 14.0 73 402-483 33-115 (294)
262 1y5e_A Molybdenum cofactor bio 59.4 39 0.0013 30.8 9.0 68 70-141 11-82 (169)
263 3l6u_A ABC-type sugar transpor 59.3 16 0.00054 36.6 7.0 81 71-156 7-90 (293)
264 2pjk_A 178AA long hypothetical 58.4 37 0.0013 31.3 8.7 67 70-140 13-90 (178)
265 2hxw_A Major antigenic peptide 58.1 39 0.0013 32.4 9.5 40 405-454 16-55 (237)
266 4euo_A ABC transporter, substr 57.5 1.6E+02 0.0055 29.5 15.2 75 627-701 175-249 (320)
267 3rfq_A Pterin-4-alpha-carbinol 57.4 28 0.00095 32.4 7.6 65 72-140 30-98 (185)
268 3hl0_A Maleylacetate reductase 57.3 15 0.00051 38.3 6.4 96 62-168 24-121 (353)
269 2qmw_A PDT, prephenate dehydra 57.2 33 0.0011 34.0 8.5 84 602-687 3-97 (267)
270 3dbi_A Sugar-binding transcrip 57.1 34 0.0011 35.1 9.3 85 67-156 56-144 (338)
271 3ksm_A ABC-type sugar transpor 56.5 18 0.00063 35.6 6.9 80 74-156 2-85 (276)
272 3brq_A HTH-type transcriptiona 56.5 35 0.0012 33.9 9.2 82 69-156 16-102 (296)
273 3rot_A ABC sugar transporter, 56.2 16 0.00054 36.8 6.4 81 73-156 4-87 (297)
274 1i4n_A Indole-3-glycerol phosp 56.1 47 0.0016 32.5 9.4 86 61-157 64-152 (251)
275 3o66_A Glycine betaine/carniti 56.0 45 0.0015 33.4 9.5 66 591-658 129-202 (282)
276 2fqx_A Membrane lipoprotein TM 55.8 52 0.0018 33.5 10.3 62 73-140 5-71 (318)
277 3p6l_A Sugar phosphate isomera 55.6 56 0.0019 31.9 10.3 93 61-156 25-129 (262)
278 2fn9_A Ribose ABC transporter, 55.2 28 0.00096 34.7 8.1 79 73-156 3-84 (290)
279 3s99_A Basic membrane lipoprot 54.7 36 0.0012 35.4 8.9 87 72-168 26-118 (356)
280 2is8_A Molybdopterin biosynthe 54.7 35 0.0012 31.0 7.7 64 74-141 3-72 (164)
281 3k4h_A Putative transcriptiona 54.0 22 0.00077 35.4 7.1 80 71-156 7-93 (292)
282 3tsm_A IGPS, indole-3-glycerol 53.7 85 0.0029 31.1 10.9 87 61-157 82-171 (272)
283 3sya_A G protein-activated inw 53.6 19 0.00065 37.1 6.3 60 530-589 89-152 (340)
284 3jzd_A Iron-containing alcohol 53.2 16 0.00053 38.3 5.7 96 62-168 26-123 (358)
285 3mwb_A Prephenate dehydratase; 53.0 23 0.00079 36.0 6.7 85 602-687 6-101 (313)
286 1ccw_A Protein (glutamate muta 53.0 77 0.0026 27.6 9.5 85 74-167 5-93 (137)
287 3huu_A Transcription regulator 52.9 18 0.00062 36.5 6.2 85 66-156 16-107 (305)
288 3r6u_A Choline-binding protein 52.6 85 0.0029 31.4 10.9 90 591-685 130-230 (284)
289 3um7_A Potassium channel subfa 52.6 15 0.00051 37.3 5.2 53 532-584 224-284 (309)
290 2q5c_A NTRC family transcripti 51.7 48 0.0016 31.1 8.4 108 30-157 54-162 (196)
291 1jx6_A LUXP protein; protein-l 51.6 33 0.0011 35.2 8.1 82 73-156 44-129 (342)
292 3um7_A Potassium channel subfa 51.5 8.7 0.0003 39.0 3.3 52 532-583 115-168 (309)
293 2yxb_A Coenzyme B12-dependent 51.3 1.2E+02 0.004 27.3 10.7 85 73-166 19-107 (161)
294 2h3h_A Sugar ABC transporter, 51.1 30 0.001 34.9 7.6 79 74-156 3-83 (313)
295 3kke_A LACI family transcripti 50.8 30 0.001 34.9 7.4 84 67-156 10-95 (303)
296 2fvy_A D-galactose-binding per 50.5 32 0.0011 34.5 7.7 79 73-156 3-85 (309)
297 2fep_A Catabolite control prot 50.0 38 0.0013 33.7 8.1 78 73-156 17-96 (289)
298 2vd3_A ATP phosphoribosyltrans 48.8 34 0.0012 34.2 7.0 101 591-700 105-208 (289)
299 3k9c_A Transcriptional regulat 48.4 38 0.0013 33.8 7.7 82 67-156 7-89 (289)
300 3isp_A HTH-type transcriptiona 48.0 70 0.0024 31.8 9.8 54 419-483 120-173 (303)
301 2qmx_A Prephenate dehydratase; 47.9 52 0.0018 32.9 8.3 79 602-687 6-95 (283)
302 2g2c_A Putative molybdenum cof 47.9 64 0.0022 29.2 8.4 63 74-140 7-78 (167)
303 3lmz_A Putative sugar isomeras 47.6 81 0.0028 30.7 9.9 93 61-156 33-127 (257)
304 2ioy_A Periplasmic sugar-bindi 47.5 42 0.0014 33.2 7.9 79 73-156 2-83 (283)
305 3iwt_A 178AA long hypothetical 47.3 48 0.0016 30.4 7.6 63 74-140 17-90 (178)
306 3lr1_A Tungstate ABC transport 46.7 14 0.00048 36.0 3.9 75 401-484 18-95 (236)
307 3fd3_A Chromosome replication 45.8 1.4E+02 0.0046 27.1 10.9 68 402-482 15-82 (208)
308 3h5o_A Transcriptional regulat 45.8 49 0.0017 33.8 8.3 81 70-156 60-142 (339)
309 2nr1_A NR1 M2, M2; receptor, s 45.7 6.1 0.00021 23.3 0.6 18 531-548 7-24 (27)
310 1oj7_A Hypothetical oxidoreduc 45.7 52 0.0018 34.9 8.6 83 63-151 43-128 (408)
311 2klu_A T-cell surface glycopro 45.0 55 0.0019 24.2 5.6 10 777-786 42-51 (70)
312 2dri_A D-ribose-binding protei 44.1 50 0.0017 32.4 7.8 79 73-156 2-83 (271)
313 3kjx_A Transcriptional regulat 44.1 54 0.0019 33.6 8.3 78 73-156 69-148 (344)
314 3hs3_A Ribose operon repressor 43.8 43 0.0015 33.1 7.2 68 67-139 5-75 (277)
315 2eq5_A 228AA long hypothetical 43.7 20 0.00069 34.6 4.5 72 67-143 111-186 (228)
316 3egc_A Putative ribose operon 43.6 19 0.00064 36.1 4.5 80 71-156 7-88 (291)
317 2iks_A DNA-binding transcripti 43.3 21 0.00071 35.8 4.8 85 67-156 15-101 (293)
318 2zsk_A PH1733, 226AA long hypo 43.1 68 0.0023 30.7 8.3 41 61-104 104-144 (226)
319 1y80_A Predicted cobalamin bin 43.0 1.3E+02 0.0045 28.2 10.2 86 73-166 89-178 (210)
320 1ta9_A Glycerol dehydrogenase; 43.0 29 0.001 37.4 6.0 96 62-167 81-178 (450)
321 3kbq_A Protein TA0487; structu 42.6 91 0.0031 28.4 8.4 61 74-139 5-70 (172)
322 3e61_A Putative transcriptiona 42.5 35 0.0012 33.6 6.3 77 72-156 8-87 (277)
323 1jye_A Lactose operon represso 42.1 57 0.0019 33.6 8.1 65 71-139 60-126 (349)
324 2rjo_A Twin-arginine transloca 41.9 46 0.0016 34.0 7.3 79 73-156 6-89 (332)
325 2rgy_A Transcriptional regulat 41.6 39 0.0013 33.7 6.5 79 72-156 8-91 (290)
326 3d8u_A PURR transcriptional re 41.2 39 0.0013 33.2 6.4 78 73-156 4-83 (275)
327 2qsx_A Putative transcriptiona 40.9 1.3E+02 0.0043 28.0 9.9 69 629-699 140-210 (218)
328 4a29_A Engineered retro-aldol 40.8 92 0.0031 30.4 8.4 84 63-157 69-155 (258)
329 3gv0_A Transcriptional regulat 40.8 41 0.0014 33.4 6.6 80 71-156 7-90 (288)
330 3okf_A 3-dehydroquinate syntha 40.5 90 0.0031 32.8 9.1 112 47-167 41-158 (390)
331 3rvy_A ION transport protein; 40.1 20 0.00068 36.1 3.9 58 530-587 178-243 (285)
332 3brs_A Periplasmic binding pro 39.8 20 0.00067 35.8 3.9 81 73-156 6-91 (289)
333 2vk2_A YTFQ, ABC transporter p 39.8 46 0.0016 33.4 6.8 79 73-156 3-84 (306)
334 3hcw_A Maltose operon transcri 39.3 37 0.0013 34.0 5.9 79 72-156 7-92 (295)
335 2hqb_A Transcriptional activat 38.9 52 0.0018 33.0 7.0 64 73-141 6-73 (296)
336 3spc_A Inward-rectifier K+ cha 38.9 45 0.0015 34.3 6.3 60 530-589 92-155 (343)
337 1jlj_A Gephyrin; globular alph 38.7 83 0.0029 29.2 7.7 68 69-140 11-87 (189)
338 3ezx_A MMCP 1, monomethylamine 38.5 1.2E+02 0.0041 28.7 9.0 86 73-166 93-184 (215)
339 2qip_A Protein of unknown func 38.4 1.9E+02 0.0064 25.9 10.0 94 62-156 37-134 (165)
340 3e3m_A Transcriptional regulat 38.3 80 0.0028 32.5 8.6 80 71-156 69-150 (355)
341 2x7x_A Sensor protein; transfe 38.2 68 0.0023 32.5 7.9 80 72-156 6-88 (325)
342 3qk7_A Transcriptional regulat 37.8 52 0.0018 32.8 6.8 78 72-156 6-89 (294)
343 2l82_A Designed protein OR32; 37.4 1.6E+02 0.0056 23.8 11.7 97 49-156 4-104 (162)
344 2l69_A Rossmann 2X3 fold prote 37.2 1.5E+02 0.0051 23.3 8.0 80 47-135 26-105 (134)
345 3miz_A Putative transcriptiona 37.1 84 0.0029 31.3 8.3 83 66-155 7-92 (301)
346 3cg1_A UPF0100 protein PF0080; 37.0 3.1E+02 0.011 26.9 14.2 72 405-483 20-100 (296)
347 2dwu_A Glutamate racemase; iso 36.9 1.4E+02 0.0049 29.5 9.7 111 2-141 67-190 (276)
348 1gud_A ALBP, D-allose-binding 36.4 63 0.0021 32.0 7.1 81 73-156 2-85 (288)
349 3lte_A Response regulator; str 36.4 1.5E+02 0.0052 24.5 8.8 57 88-155 18-76 (132)
350 3qja_A IGPS, indole-3-glycerol 36.3 1E+02 0.0034 30.6 8.3 87 61-157 75-164 (272)
351 3c3k_A Alanine racemase; struc 36.0 1E+02 0.0035 30.4 8.6 79 71-156 7-87 (285)
352 1dbq_A Purine repressor; trans 35.7 72 0.0025 31.4 7.5 65 72-141 7-73 (289)
353 3umf_A Adenylate kinase; rossm 35.3 15 0.00051 35.3 2.0 32 3-34 29-60 (217)
354 3szp_A Transcriptional regulat 35.3 24 0.00083 34.9 3.7 71 626-698 212-284 (291)
355 2gzm_A Glutamate racemase; enz 35.2 93 0.0032 30.7 8.0 110 3-141 64-186 (267)
356 2b4l_A Glycine betaine-binding 35.1 51 0.0017 32.7 6.0 40 405-453 181-220 (268)
357 3ukm_A Potassium channel subfa 34.3 26 0.00087 35.0 3.5 54 531-584 92-147 (280)
358 3bbl_A Regulatory protein of L 34.3 52 0.0018 32.6 6.1 78 73-156 5-88 (287)
359 3pzy_A MOG; ssgcid, seattle st 33.9 1.1E+02 0.0039 27.5 7.6 63 73-140 8-75 (164)
360 3o1i_D Periplasmic protein TOR 33.6 38 0.0013 33.8 5.0 80 73-156 6-88 (304)
361 3clk_A Transcription regulator 33.4 38 0.0013 33.7 4.8 80 72-156 8-89 (290)
362 1uuy_A CNX1, molybdopterin bio 33.3 2.1E+02 0.007 25.8 9.4 64 73-140 6-80 (167)
363 3mz1_A Putative transcriptiona 33.2 38 0.0013 33.5 4.9 70 626-697 214-285 (300)
364 2bon_A Lipid kinase; DAG kinas 33.2 2.5E+02 0.0085 28.6 11.1 76 73-154 30-105 (332)
365 2oho_A Glutamate racemase; iso 32.9 73 0.0025 31.6 6.8 75 3-105 73-150 (273)
366 2pju_A Propionate catabolism o 32.8 1.6E+02 0.0053 28.2 8.7 108 30-157 66-174 (225)
367 3bil_A Probable LACI-family tr 32.6 76 0.0026 32.6 7.2 78 73-156 67-146 (348)
368 2hsg_A Glucose-resistance amyl 32.5 58 0.002 33.1 6.2 79 72-156 60-140 (332)
369 4es6_A Uroporphyrinogen-III sy 31.8 40 0.0014 33.0 4.6 87 58-152 114-205 (254)
370 3zy2_A Putative GDP-fucose pro 31.7 1.8E+02 0.0063 29.7 9.2 90 51-155 259-348 (362)
371 1di6_A MOGA, molybdenum cofact 31.5 1.2E+02 0.0042 28.2 7.6 64 73-140 4-75 (195)
372 2o20_A Catabolite control prot 31.4 1.1E+02 0.0037 31.0 8.1 80 71-156 62-143 (332)
373 2pbq_A Molybdenum cofactor bio 30.6 1.3E+02 0.0043 27.6 7.5 62 74-140 7-77 (178)
374 3o1l_A Formyltetrahydrofolate 30.2 4.3E+02 0.015 26.4 12.5 98 4-107 23-139 (302)
375 3l4e_A Uncharacterized peptida 29.7 1.2E+02 0.0043 28.4 7.4 96 62-168 17-121 (206)
376 3grc_A Sensor protein, kinase; 29.0 1.5E+02 0.005 25.0 7.5 56 87-153 17-74 (140)
377 1vc4_A Indole-3-glycerol phosp 28.9 2.1E+02 0.0072 27.9 9.2 87 61-157 68-156 (254)
378 1jfl_A Aspartate racemase; alp 28.8 64 0.0022 30.9 5.4 41 61-104 105-145 (228)
379 3sr0_A Adenylate kinase; phosp 28.6 24 0.00082 33.5 2.1 31 5-35 2-32 (206)
380 2i2x_B MTAC, methyltransferase 28.5 3.9E+02 0.013 25.9 11.2 84 72-166 123-211 (258)
381 2l2t_A Receptor tyrosine-prote 28.4 69 0.0024 21.7 3.7 6 758-763 32-37 (44)
382 3i42_A Response regulator rece 28.4 2.4E+02 0.0083 23.0 10.9 57 87-154 14-72 (127)
383 2jfn_A Glutamate racemase; cel 28.2 1.1E+02 0.0036 30.7 7.0 31 3-33 83-113 (285)
384 1sg6_A Pentafunctional AROM po 27.9 2.4E+02 0.0082 29.5 10.1 96 67-167 31-140 (393)
385 2qv7_A Diacylglycerol kinase D 27.9 2.8E+02 0.0094 28.2 10.4 75 72-153 24-102 (337)
386 1pii_A N-(5'phosphoribosyl)ant 27.7 1.3E+02 0.0044 32.3 7.8 86 61-157 71-159 (452)
387 3luy_A Probable chorismate mut 27.5 1.5E+02 0.0051 30.3 7.9 83 603-687 7-106 (329)
388 3rf7_A Iron-containing alcohol 27.4 95 0.0033 32.5 6.7 95 47-150 28-130 (375)
389 3fni_A Putative diflavin flavo 27.0 1.5E+02 0.0052 26.3 7.3 75 73-157 5-86 (159)
390 3lua_A Response regulator rece 27.0 2.8E+02 0.0094 23.2 10.3 56 87-153 15-75 (140)
391 1xrs_B D-lysine 5,6-aminomutas 26.7 3.5E+02 0.012 26.4 10.2 98 61-166 107-222 (262)
392 2pln_A HP1043, response regula 26.7 2.1E+02 0.0071 23.9 8.0 54 88-154 30-83 (137)
393 3lft_A Uncharacterized protein 26.5 78 0.0027 31.5 5.8 65 73-140 3-71 (295)
394 3hhg_A Transcriptional regulat 25.8 51 0.0017 32.8 4.2 80 375-483 93-172 (306)
395 1byk_A Protein (trehalose oper 25.7 1.2E+02 0.004 29.2 6.8 63 73-140 3-67 (255)
396 3kht_A Response regulator; PSI 25.7 3E+02 0.01 23.1 11.3 59 87-154 16-76 (144)
397 3iv7_A Alcohol dehydrogenase I 25.5 44 0.0015 34.9 3.7 95 61-168 26-122 (364)
398 3fxb_A Trap dicarboxylate tran 25.4 56 0.0019 33.5 4.4 88 590-685 144-232 (326)
399 2qu7_A Putative transcriptiona 25.4 1E+02 0.0035 30.3 6.5 65 72-141 8-73 (288)
400 4ib2_A Putative lipoprotein; p 25.2 1.8E+02 0.0062 28.3 7.7 39 406-452 27-65 (252)
401 2jwa_A Receptor tyrosine-prote 24.6 1.4E+02 0.0048 20.2 4.6 21 744-764 19-39 (44)
402 3n0v_A Formyltetrahydrofolate 24.6 4.4E+02 0.015 26.1 10.7 98 4-107 9-124 (286)
403 3eeg_A 2-isopropylmalate synth 24.6 4.9E+02 0.017 26.3 11.4 33 3-35 16-48 (325)
404 4ecf_A ABC-type phosphate tran 24.5 1E+02 0.0036 30.2 6.2 70 404-483 18-91 (264)
405 1qpz_A PURA, protein (purine n 24.4 1.4E+02 0.0049 30.2 7.5 66 71-141 57-124 (340)
406 3gt7_A Sensor protein; structu 24.4 3.3E+02 0.011 23.2 11.6 58 87-155 18-77 (154)
407 1xah_A Sadhqs, 3-dehydroquinat 23.9 1.6E+02 0.0056 30.3 7.8 110 47-168 11-126 (354)
408 3s40_A Diacylglycerol kinase; 23.8 2.8E+02 0.0096 27.7 9.4 76 71-153 7-85 (304)
409 1usg_A Leucine-specific bindin 23.8 2E+02 0.0067 29.0 8.5 80 74-156 4-94 (346)
410 2qxy_A Response regulator; reg 23.6 3.2E+02 0.011 22.8 9.0 58 87-155 15-73 (142)
411 3guv_A Site-specific recombina 23.6 3.9E+02 0.013 23.7 10.5 39 117-155 59-105 (167)
412 2lpm_A Two-component response 23.4 85 0.0029 26.7 4.5 67 76-155 11-79 (123)
413 3exa_A TRNA delta(2)-isopenten 23.2 47 0.0016 33.8 3.2 35 1-35 1-35 (322)
414 2j48_A Two-component sensor ki 23.2 2.4E+02 0.0082 22.3 7.6 58 87-155 12-71 (119)
415 3ney_A 55 kDa erythrocyte memb 22.8 2.4E+02 0.0082 26.2 7.9 27 2-28 18-44 (197)
416 3eod_A Protein HNR; response r 22.8 2.6E+02 0.0088 22.9 7.8 68 73-155 8-77 (130)
417 3jvd_A Transcriptional regulat 22.6 75 0.0026 32.4 4.8 65 70-140 62-128 (333)
418 3ksx_A Nitrate transport prote 21.9 1.7E+02 0.0058 29.4 7.4 84 603-688 31-123 (324)
419 3kto_A Response regulator rece 21.9 3.4E+02 0.012 22.5 8.9 58 87-155 17-78 (136)
420 3c3m_A Response regulator rece 21.8 3.5E+02 0.012 22.5 8.7 56 88-154 15-72 (138)
421 3cg4_A Response regulator rece 21.7 3.5E+02 0.012 22.5 12.3 56 87-153 18-75 (142)
422 3h8v_A Ubiquitin-like modifier 21.5 4.5E+02 0.016 26.1 10.1 95 58-155 46-162 (292)
423 2jfq_A Glutamate racemase; cel 21.5 2.6E+02 0.009 27.7 8.5 31 3-33 83-113 (286)
424 3kn3_A Putative periplasmic pr 21.4 57 0.002 31.7 3.3 74 401-483 18-94 (242)
425 2rjn_A Response regulator rece 21.4 3.1E+02 0.011 23.4 8.3 58 87-155 18-77 (154)
426 2h0a_A TTHA0807, transcription 21.3 37 0.0013 33.4 2.0 75 75-155 2-78 (276)
427 3hv2_A Response regulator/HD d 21.2 2.8E+02 0.0095 23.7 7.9 58 87-155 25-84 (153)
428 3gl9_A Response regulator; bet 21.2 3.3E+02 0.011 22.1 10.6 58 87-155 13-72 (122)
429 1zud_1 Adenylyltransferase THI 21.2 5.1E+02 0.017 24.9 10.4 87 59-155 39-143 (251)
430 3qbe_A 3-dehydroquinate syntha 21.1 4.2E+02 0.014 27.4 10.1 111 46-167 22-138 (368)
431 2qh8_A Uncharacterized protein 21.1 1.3E+02 0.0046 29.9 6.3 66 72-140 8-78 (302)
432 3fdi_A Uncharacterized protein 21.1 52 0.0018 30.9 2.9 33 1-33 4-36 (201)
433 3gyb_A Transcriptional regulat 21.0 66 0.0023 31.6 3.9 62 73-141 6-69 (280)
434 3p9x_A Phosphoribosylglycinami 20.6 2.4E+02 0.0084 26.5 7.5 84 60-151 16-102 (211)
435 2l69_A Rossmann 2X3 fold prote 20.6 3.1E+02 0.011 21.5 7.5 71 47-128 51-121 (134)
436 3hdv_A Response regulator; PSI 20.4 3.6E+02 0.012 22.2 10.4 58 87-155 18-78 (136)
437 3hly_A Flavodoxin-like domain; 20.3 1.9E+02 0.0067 25.6 6.6 75 74-158 2-82 (161)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-92 Score=861.91 Aligned_cols=706 Identities=21% Similarity=0.346 Sum_probs=583.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|+|||||.+|+++.+++++++.++||+|+++ .+.. ..+||+||+.|+ |+.+++++++++||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d 129 (823)
T 3kg2_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (823)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-C
T ss_pred hcCcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-e
Confidence 3689999999999999999999999999999973 3333 367899999998 899999999999999999999 8
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||...++.+.+++++.|+||++.+.++.+...++.|+++++++|+++++|+|+++++..++..++++|+++||..++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 209 (823)
T 3kg2_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (823)
T ss_dssp GGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTC
T ss_pred CChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCe
Confidence 88999999999999999999999998776542234789999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCC------CCCCcchhhHhhHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIA 235 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la 235 (843)
+||.++......+. ....+...|++++.++.++.|.+++|.++|+++++.. ..++.+++++||||+++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la 284 (823)
T 3kg2_A 210 HYIIANLGFTDGDL-----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (823)
T ss_dssp EEEECSSBSSSSCC-----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEecccccccch-----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHH
Confidence 99999854433222 1233455678899999999999999999999988632 135678999999999999
Q ss_pred HHHHHHhhcCCcccccCCCccCCCCCCcccCCCc--ccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee
Q 003167 236 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 313 (843)
Q Consensus 236 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~ 313 (843)
+|+++++.++.+.... ....+|... ..+.+|++|+++|++++|+|++|+++||++|++....|+|++++
T Consensus 285 ~Al~~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~ 355 (823)
T 3kg2_A 285 EAFRNLRKQRIEISRR---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355 (823)
T ss_dssp HHHHHHHTTTCCCCCS---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEEC
T ss_pred HHHHHHHhhccccccC---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEc
Confidence 9999998754432211 112234332 45667999999999999999999999999999999999999999
Q ss_pred ecCceeeeeeecCCCCCcccCCcccccCCCCCCCCCCccceeeeCCCcccCCccccccCCCCeeEEEecCcccccccEEe
Q 003167 314 EHGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWVFPNNGRQLRIGVPNRVSYRDFVFK 393 (843)
Q Consensus 314 ~~~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~~~~~g~~lrv~v~~~~~~~p~~~~ 393 (843)
+++. ++||+|++..|+....+ . .....|++|+|++.. .+||.+.
T Consensus 356 ~~g~-~~vg~w~~~~g~~~~~~------------------------------~--~~~~~~~~l~v~~~~---~~P~~~~ 399 (823)
T 3kg2_A 356 TNGP-RKIGYWSEVDKMVLTED------------------------------D--TSGLEQKTVVVTTIL---ESPYVMM 399 (823)
T ss_dssp SSCE-EEEEEEETTTEEEECCC------------------------------C--CSSCCCCCEEEEECC---CTTTSEE
T ss_pred CCCC-eeEEEEcCCCCceeccC------------------------------c--ccccCCCEEEEEEec---CCCcEEE
Confidence 9888 99999999887653211 0 013468899999975 4555554
Q ss_pred e------cCcceEEeEeHHHHHHHHHHCCCcccEEEEeC---CC-CCCCCChHHHHHHHHcCcccEEEeceeeecCccee
Q 003167 394 V------NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPY---GD-GHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKA 463 (843)
Q Consensus 394 ~------~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~---~~-~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~~~ 463 (843)
. ++++++.|||+||++++++++||+++++.++. |. ...|++|++++++|.+|++|++++++++|.+|.+.
T Consensus 400 ~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~ 479 (823)
T 3kg2_A 400 KANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEV 479 (823)
T ss_dssp CTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTT
T ss_pred ecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheee
Confidence 2 24789999999999999999999977777663 22 12578899999999999999999999999999999
Q ss_pred eeecccccccceEEEEeccC-CCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC-------------
Q 003167 464 VDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP------------- 529 (843)
Q Consensus 464 vdfs~p~~~~~~~~~v~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------- 529 (843)
+|||.||+.+++++++|++. ..++++.|++||++.+|++++++++++++++|+++|..+.+|+.+.
T Consensus 480 ~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~ 559 (823)
T 3kg2_A 480 IDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSEST 559 (823)
T ss_dssp EEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------C
T ss_pred EEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCccccccccccccccc
Confidence 99999999999999999987 4578999999999999999999999999999999998654443221
Q ss_pred -cccchhhHHHHHHHHhhcccc-cccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCC-CeEE
Q 003167 530 -RKQIVTVLWFSFSTMFFAHRE-NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSN-DRVG 606 (843)
Q Consensus 530 -~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~-~~i~ 606 (843)
..++.+++|++++++++|+.. .|++.++|+++++|||++||++++|||+|+|+||++++.++|+|++||.+++ .++|
T Consensus 560 ~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~ 639 (823)
T 3kg2_A 560 NEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYG 639 (823)
T ss_dssp HHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEE
Confidence 234779999999999988865 7899999999999999999999999999999999999999999999999865 3577
Q ss_pred EEeCchHHHHHHHhhCCCC-----------cceEeCCCHHHHHHHHh-cCCcEEEEcChhhHHHHHhcC-CCeEEeCCcc
Q 003167 607 YQVGSFAENYLIEELSIPK-----------SRLVALGSPEEYAIALE-NRTVAAVVDERPYIDLFLSDH-CQFSVRGQEF 673 (843)
Q Consensus 607 ~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~l~-~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~ 673 (843)
+..++....++.+. +... ...+.+++.++++++++ +++.+|++.+.+.++|+.+++ |+++.+++.+
T Consensus 640 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~ 718 (823)
T 3kg2_A 640 TLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNL 718 (823)
T ss_dssp CBSSSHHHHHHHHC-CCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCCEEEESCCS
T ss_pred EEeCCcHHHHHHhc-cchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCCceEEccccc
Confidence 77777777777542 1110 01123568999999997 577799999999999988775 9999999999
Q ss_pred ccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcc-cCCCCCCCCC--CCCCCcccccchHHHHHHHHHHHHHH
Q 003167 674 TKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACSSESSQ--SDSEQLQIQSFRGLFLICGIACFLAL 750 (843)
Q Consensus 674 ~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~~~~~~--~~~~~L~l~~~~g~f~il~~g~~lal 750 (843)
...++++++||||||++.||++|+++.|+|++++|+++|+. ...|...... ....+|+++++.|+|+++++|+++|+
T Consensus 719 ~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~ 798 (823)
T 3kg2_A 719 DSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAM 798 (823)
T ss_dssp SCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred cccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 7789876433 35679999999999999999999999
Q ss_pred HHHHHHHHHHhhhccc
Q 003167 751 LAYFCLMLRQFKKYSA 766 (843)
Q Consensus 751 ~vf~~e~~~~~~~~~~ 766 (843)
++|++|++|+++++++
T Consensus 799 ~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 799 LVALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHcchhhh
Confidence 9999999998776554
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=3.3e-41 Score=372.27 Aligned_cols=306 Identities=16% Similarity=0.274 Sum_probs=258.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|+|||||.+|+++.+++++++.++||+|++++ |.++ ..+|.||+.|+ |+.+++++++++||++|++|| |
T Consensus 67 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 138 (389)
T 3o21_A 67 SRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-D 138 (389)
T ss_dssp TTTCSCEEECCCTTTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-C
T ss_pred hcCcEEEEeCCChhHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-c
Confidence 46899999999999999999999999999998754 4443 34667777776 899999999999999999999 8
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||...++.|.+++++.|+||++.+.++.. ++.|++++|++|+++++|+|+++++..++..+++||+++||..++|
T Consensus 139 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~ 215 (389)
T 3o21_A 139 TERGFSVLQAIMEAAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGY 215 (389)
T ss_dssp STTCSHHHHHHHHHHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTC
T ss_pred CcHHHHHHHHHHHHhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCe
Confidence 8999999999999999999999998877543 3569999999999999999999999999999999999999998899
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCC------CCCCcchhhHhhHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIA 235 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la 235 (843)
+||+++.+....+. ........|++++..+.+++|.+++|+++|+++|+.. ..++.+++++|||++++|
T Consensus 216 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a 290 (389)
T 3o21_A 216 HYMLANLGFTDILL-----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIA 290 (389)
T ss_dssp EEEECCTTGGGCCC-----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEccCCcccccH-----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHH
Confidence 99998855444332 2344556788999888899999999999999988632 134678999999999999
Q ss_pred HHHHHHhhcCCcccccCCCccCCCCCCcccC--CCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee
Q 003167 236 RALKLFLDQGNTISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 313 (843)
Q Consensus 236 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~ 313 (843)
+|++++..++....+. +....| .+..+|.+|.+|+++|++++|+|++|+|+||++|++....|+|+++.
T Consensus 291 ~Al~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~ 361 (389)
T 3o21_A 291 EAFRYLRRQRVDVSRR---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMK 361 (389)
T ss_dssp HHHHHHHHTTCCCC--------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEE
T ss_pred HHHHHHHhhCcccccC---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEc
Confidence 9999997654322111 111234 33456778999999999999999999999999999888999999999
Q ss_pred ecCceeeeeeecCCCCCccc
Q 003167 314 EHGYPQQIGYWSNYSGLSVV 333 (843)
Q Consensus 314 ~~~~~~~VG~w~~~~gl~~~ 333 (843)
+++. ++||+|++..||+..
T Consensus 362 ~~g~-~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 362 VSGS-RKAGYWNEYERFVPF 380 (389)
T ss_dssp TTEE-EEEEEEETTTEEECC
T ss_pred CCCc-eeeeEEcCCCCcccc
Confidence 8887 999999999998754
No 3
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.4e-41 Score=374.04 Aligned_cols=308 Identities=20% Similarity=0.318 Sum_probs=241.4
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|.|||||.+|+++.++++++++++||+|+++++ . ....+|+||+.|+ |+.+++++++++||++|++|| |
T Consensus 58 ~~~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d 129 (376)
T 3hsy_A 58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D 129 (376)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCcEEEECCCchhHHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-e
Confidence 468999999999999999999999999999998763 2 2356899999887 899999999999999999999 8
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||....+.|.+++++.|+||+..+.++.....++.|++++|++|+++++|+|+++++..++..+++|++++||+.++|
T Consensus 130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~ 209 (376)
T 3hsy_A 130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY 209 (376)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGC
T ss_pred CchhHHHHHHHHHHhhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCc
Confidence 99999999999999999999999887665320023689999999999999999999999999999999999999998899
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCCC------CCCcchhhHhhHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI------GLNPYGLYAYDTVWMIA 235 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~~~~~~~~~YDAv~~la 235 (843)
+||++++.....+. ........+++++....+++|..++|+++|+++|+... .++.+++++|||++++|
T Consensus 210 ~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la 284 (376)
T 3hsy_A 210 HYIIANLGFTDGDL-----LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMT 284 (376)
T ss_dssp EEEECSSBTTSTTG-----GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCccccch-----HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHH
Confidence 99999753322221 11222234578888888889999999999999886321 37789999999999999
Q ss_pred HHHHHHhhcCCcccccCCCccCCCCCCcccC--CCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee
Q 003167 236 RALKLFLDQGNTISFSNDTKLNGLGGGTLNL--GALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 313 (843)
Q Consensus 236 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~ 313 (843)
+|++++.+++..... .+....| .+..+|.+|.+|+++|++++|+|++|+|+||++|++....|+|+++.
T Consensus 285 ~Ai~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~ 355 (376)
T 3hsy_A 285 EAFRNLRKQRIEISR---------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELK 355 (376)
T ss_dssp HHHHHHHHTTCCCSC---------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEE
T ss_pred HHHHHHHhcCCcccc---------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEec
Confidence 999999875432211 1112244 45566778999999999999999999999999999999999999999
Q ss_pred ecCceeeeeeecCCCCCcc
Q 003167 314 EHGYPQQIGYWSNYSGLSV 332 (843)
Q Consensus 314 ~~~~~~~VG~w~~~~gl~~ 332 (843)
+++. ++||+|++..||+.
T Consensus 356 ~~g~-~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 356 TNGP-RKIGYWSEVDKMVV 373 (376)
T ss_dssp TTEE-EEEEEEETTTEEEE
T ss_pred CCCc-eEEEEEcCCCCcee
Confidence 8887 99999999998764
No 4
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=4.6e-41 Score=372.40 Aligned_cols=311 Identities=15% Similarity=0.230 Sum_probs=263.8
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|+|||||.+|+++.+++++++.++||+|+++++.+.. .+|++++|+. +++++++++++|||++|++||++
T Consensus 67 ~~~V~aiiG~~~S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~ 139 (389)
T 4gpa_A 67 SRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDT 139 (389)
T ss_dssp HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECS
T ss_pred hcCCEEEEeCCccHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEec
Confidence 4789999999999999999999999999999987665433 3566666654 35689999999999999999977
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
+.++ ...+.+.+.+.+.|+||+..+.++.. ..|++.+|.+++++++|+|++.++..++..++++|+++||+..++
T Consensus 140 d~~~-~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~ 214 (389)
T 4gpa_A 140 DRGY-SILQAIMEKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGY 214 (389)
T ss_dssp TTCS-HHHHHHHHHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTC
T ss_pred chhh-HHHHHHHHHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCce
Confidence 7665 45778889999999999998877666 899999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCC-----CCCCCcchhhHhhHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG-----SIGLNPYGLYAYDTVWMIAR 236 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~~YDAv~~la~ 236 (843)
+||+++++...... ........|+.++....+..+.+++|.++|++.+.. ...++.+++++||||+++|+
T Consensus 215 ~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~ 289 (389)
T 4gpa_A 215 HYIIANLGFKDISL-----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAE 289 (389)
T ss_dssp EEEECSSBGGGSCC-----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCccccchhh-----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHH
Confidence 99999877655433 455667788999999999999999999999987752 24567889999999999999
Q ss_pred HHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecC
Q 003167 237 ALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 316 (843)
Q Consensus 237 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~ 316 (843)
||+++..+...... ......+.|....+|.+|.+|+++|++++|+|++|+|+||++|+|.+..|+|+|+++++
T Consensus 290 Al~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~ 362 (389)
T 4gpa_A 290 TFRSLRRQKIDISR-------RGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTG 362 (389)
T ss_dssp HHHHHHHTTCCCCC-------TTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTE
T ss_pred HHHHHHhhcccccc-------cCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCE
Confidence 99999876543211 12233445666778888999999999999999999999999999988999999999988
Q ss_pred ceeeeeeecCCCCCcccCCcc
Q 003167 317 YPQQIGYWSNYSGLSVVPPEK 337 (843)
Q Consensus 317 ~~~~VG~w~~~~gl~~~~~~~ 337 (843)
+ ++||+|++..||.+..|++
T Consensus 363 ~-~~VG~W~~~~gl~~~~~~t 382 (389)
T 4gpa_A 363 P-RKVGYWNDMDKLVLIQDRT 382 (389)
T ss_dssp E-EEEEEEETTTEEEECCC--
T ss_pred E-EEEEEEECCCCeEECCCCc
Confidence 7 9999999999998877644
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=2e-40 Score=367.91 Aligned_cols=306 Identities=21% Similarity=0.332 Sum_probs=260.4
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|.|||||.+|+++.++++++++++||+|+++++++.+++ ..+|+||+.|++..|+.+++++++++||++|++|| |
T Consensus 69 ~~~V~aiiG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d 146 (395)
T 3h6g_A 69 SLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-D 146 (395)
T ss_dssp HHCCSCEECCSSHHHHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-S
T ss_pred hcCcEEEECCCChhHHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-E
Confidence 358999999999999999999999999999999999999986 36889999999999999999999999999999998 7
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||....+.+.+.+++.|++|+... ++.+ ..|+++++++|+++++|+|++++...++..+++||+++||..+.|
T Consensus 147 ~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~ 221 (395)
T 3h6g_A 147 DSTGLIRLQELIKAPSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYY 221 (395)
T ss_dssp STHHHHHTHHHHTGGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTC
T ss_pred ChhHHHHHHHHHHhhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCce
Confidence 78999999999999999999999875 7766 789999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCCC----------CCCcchhhHhhHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSI----------GLNPYGLYAYDTV 231 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~~~~~~~~YDAv 231 (843)
+||+++......+... ......++.++..+.+++|..++|.++|++++.... .++.+++++|||+
T Consensus 222 ~~i~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav 296 (395)
T 3h6g_A 222 HYIFTTLDLFALDVEP-----YRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAV 296 (395)
T ss_dssp EEEECCTTGGGBCCTT-----TTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHH
T ss_pred EEEEecCceeEechHH-----hccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHH
Confidence 9999865433222211 111112357777788889999999999998764211 1456899999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEecc-CCCccCCcEEEE
Q 003167 232 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQ-DRSLLHPSYDII 310 (843)
Q Consensus 232 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~-~G~~~~~~~~I~ 310 (843)
+++++|++++++.. ...++|...+.|.++.+|+++|++++|+|++|+++||+ +|++....|+|+
T Consensus 297 ~~~a~Al~~a~~~~---------------~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~ 361 (395)
T 3h6g_A 297 HVVSVAVQQFPQMT---------------VSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVI 361 (395)
T ss_dssp HHHHHHHHTCTTCC---------------CCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEE
T ss_pred HHHHHHHHhhhcCC---------------CcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEE
Confidence 99999999974321 22345777777888999999999999999999999999 999988899999
Q ss_pred EeeecCceeeeeeecCCCCCcccCC
Q 003167 311 NVIEHGYPQQIGYWSNYSGLSVVPP 335 (843)
Q Consensus 311 ~~~~~~~~~~VG~w~~~~gl~~~~~ 335 (843)
+++++++ ++||+|++..|+++..+
T Consensus 362 ~~~~~~~-~~vG~w~~~~g~~~~~~ 385 (395)
T 3h6g_A 362 SLKEEGL-EKIGTWDPASGLNMTES 385 (395)
T ss_dssp EEETTEE-EEEEEEETTTEECCCC-
T ss_pred EeccCCc-eEEEEEcCCCCccccCC
Confidence 9998888 99999999999876543
No 6
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.1e-40 Score=364.52 Aligned_cols=308 Identities=20% Similarity=0.260 Sum_probs=259.6
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|+|||||.+|+++.++++++++++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |
T Consensus 65 ~~~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d 136 (384)
T 3saj_A 65 SKGVYAIFGFYERRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-D 136 (384)
T ss_dssp HTTCSCEEECCCHHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-C
T ss_pred hcCeEEEECCCCHHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-e
Confidence 3589999999999999999999999999999984 45553 45678888887 899999999999999999999 7
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||....+.|.+.+++.|+||+..+.++.+ +.|+.++|.+|+++++|+|+++++..++..++++|+++||...+|
T Consensus 137 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~ 212 (384)
T 3saj_A 137 ADRGLSVLQRVLDTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGY 212 (384)
T ss_dssp STTCSHHHHHHHHHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEE
T ss_pred CchhHHHHHHHHHHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCc
Confidence 7999999999999999999999998865545 889999999999999999999999999999999999999998899
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCC------CCCCcchhhHhhHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTVWMIA 235 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv~~la 235 (843)
+||+++.+....+. ........|++++.++.+++|..++|.++|+++++.. ..++.+++++|||+++++
T Consensus 213 ~~i~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a 287 (384)
T 3saj_A 213 HYILANLGFMDIDL-----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMA 287 (384)
T ss_dssp EEEESSSCGGGSCH-----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCcccccH-----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHH
Confidence 99999854333221 2334456678999988999999999999999988522 134678999999999999
Q ss_pred HHHHHHhhcCCcccccCCCccCCCCCCcccCCCc--ccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee
Q 003167 236 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGAL--SIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI 313 (843)
Q Consensus 236 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~ 313 (843)
+|++++++.+..... .+....|... .+|.+|.+|+++|++++|+|++|+++||++|++....|+|++++
T Consensus 288 ~Al~~~~~~~~~~~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~ 358 (384)
T 3saj_A 288 EAFQSLRRQRIDISR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMK 358 (384)
T ss_dssp HHHHHHHHTTCCCCC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEE
T ss_pred HHHHHHHhhccceec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEec
Confidence 999999875433211 1122345443 45678999999999999999999999999999999999999999
Q ss_pred ecCceeeeeeecCCCCCcccCCc
Q 003167 314 EHGYPQQIGYWSNYSGLSVVPPE 336 (843)
Q Consensus 314 ~~~~~~~VG~w~~~~gl~~~~~~ 336 (843)
+++. ++||+|++..|+++..++
T Consensus 359 ~~g~-~~VG~W~~~~gl~~~~~~ 380 (384)
T 3saj_A 359 HDGI-RKIGYWNEDDKFVPAALE 380 (384)
T ss_dssp TTEE-EEEEEEETTTEEEECCC-
T ss_pred cCCc-ceeEEEcCCCCccccCcc
Confidence 8888 999999999998776553
No 7
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=2.5e-39 Score=364.43 Aligned_cols=297 Identities=17% Similarity=0.244 Sum_probs=249.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-C-CCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-L-QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~-~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
++|+|||||.+|+++.+++++++.+++|+|++++++|.+++ . +|||+||+.|++..|+.++++++++|||+||++|++
T Consensus 83 ~~v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~ 162 (441)
T 1jdp_A 83 AKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYS 162 (441)
T ss_dssp CCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 38999999999999999999999999999999999999998 4 799999999999999999999999999999999999
Q ss_pred cCCCCcc---hHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 81 DDDQGRN---GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 81 d~~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
|++||+. ..+.+++.+++.|+||++.+.++.+ ..|+..++++|+ +++|||+++++..++..++++++++||.
T Consensus 163 d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~ 237 (441)
T 1jdp_A 163 DDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMT 237 (441)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCT
T ss_pred cCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCC
Confidence 9999999 9999999999999999988776644 457999999999 9999999999999999999999999998
Q ss_pred ccceEEEEeCcccc------cccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhh-----cCCCCCCCcchhh
Q 003167 158 DSGYVWIATTWLST------FIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTL-----SNGSIGLNPYGLY 226 (843)
Q Consensus 158 ~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~~ 226 (843)
...++||.+++... .+...............++.++..+.++.|.+++|.++|+++ |+....++.++++
T Consensus 238 ~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (441)
T 1jdp_A 238 SGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEG 317 (441)
T ss_dssp TTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHH
T ss_pred CCCEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHH
Confidence 87899999884221 111111000111234566667777778889999999999876 4422234668899
Q ss_pred HhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCc
Q 003167 227 AYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPS 306 (843)
Q Consensus 227 ~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~ 306 (843)
+||||+++|+||+++..++.. +.++++|+++|++++|+|++|+++||++|++ ...
T Consensus 318 ~YdAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~ 372 (441)
T 1jdp_A 318 FHDAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGD 372 (441)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCE
T ss_pred HHHHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCc-ccc
Confidence 999999999999998654210 1248999999999999999999999999996 489
Q ss_pred EEEEEeee--cCceeeeeeecCCCC
Q 003167 307 YDIINVIE--HGYPQQIGYWSNYSG 329 (843)
Q Consensus 307 ~~I~~~~~--~~~~~~VG~w~~~~g 329 (843)
|+|++++. +|.+++||.|++..+
T Consensus 373 ~~I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 373 FSVIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEEEETTTTEEEEEEEEETTTT
T ss_pred EEEEecccCCCCceEEEEEEcCCCC
Confidence 99999974 455599999998764
No 8
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=8.1e-40 Score=362.60 Aligned_cols=305 Identities=19% Similarity=0.278 Sum_probs=249.8
Q ss_pred CCCeEEEEcCCChHH-HHHHHHhcccCCCcEEecccCCCCCCC-CCCCce--EEcCCChHHhHHHHHHHHHHcCCcEEEE
Q 003167 2 ETDTLAIVGPQSAVM-AHVLSHLANELQVPLLSFTALDPTLSP-LQYPFF--VQTAPNDLYLMSAIAEMVSYFGWGEVIA 77 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~-~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~--fR~~p~d~~~~~ai~~ll~~~~w~~v~i 77 (843)
+++|+|||||.+|+. +.+++++++.++||+|++++++ ++ ..+|+| ||+.|++..|+.+++++++++||++|++
T Consensus 68 ~~~V~aiiG~~~S~~~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vai 144 (393)
T 3om0_A 68 PKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASL 144 (393)
T ss_dssp GGCCSCEECCSSCHHHHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEE
T ss_pred hcCcEEEECCCCchhHHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 468999999999965 5799999999999999998765 23 568998 9999999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 78 IFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 78 i~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
||+|++||+...+.+ +.+.+.|++|+... + ++ +.|+++++.+|+++++|+|+++++..++..++++|+++||.
T Consensus 145 i~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 217 (393)
T 3om0_A 145 ICAKAECLLRLEELV-RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMT 217 (393)
T ss_dssp EESSTTHHHHTHHHH-HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTT
T ss_pred EEeCchHHHHHHHHH-HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcc
Confidence 999999998876655 55778899998654 4 34 57899999999999999999999999999999999999999
Q ss_pred ccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCC------CCCCcchhhHhhHH
Q 003167 158 DSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS------IGLNPYGLYAYDTV 231 (843)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~YDAv 231 (843)
.++|+||.+++.....+.. .......|++++..+.++.|.+++|.++|+++|+.. ..++.+++++|||+
T Consensus 218 ~~~~~~i~~~~~~~~~~l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv 292 (393)
T 3om0_A 218 SAFYKYILTTMDFPILHLD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAV 292 (393)
T ss_dssp STTCEEEECCTTGGGCCCT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHH
T ss_pred cCCeEEEEecccccccchh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHH
Confidence 8889999998665443321 123456788999888888999999999888887621 24677899999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEE
Q 003167 232 WMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIIN 311 (843)
Q Consensus 232 ~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~ 311 (843)
+++|+|++++.+... .......|....+|.++.+|+++|++++|+|++|+++||++|++....|+|++
T Consensus 293 ~~la~Al~~~~~~~~------------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~ 360 (393)
T 3om0_A 293 HVVVSAVRELNRSQE------------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILE 360 (393)
T ss_dssp HHHHHHHHHHTTTSC------------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEE
T ss_pred HHHHHHHHHHhhccc------------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEE
Confidence 999999999864321 11223457777778889999999999999999999999999998899999999
Q ss_pred eeecCceeeeeeecCCCCCcccC
Q 003167 312 VIEHGYPQQIGYWSNYSGLSVVP 334 (843)
Q Consensus 312 ~~~~~~~~~VG~w~~~~gl~~~~ 334 (843)
++++++ ++||+|++..|+++..
T Consensus 361 ~~~~g~-~~VG~w~~~~gl~~~~ 382 (393)
T 3om0_A 361 KSRQGH-REIGVWYSNRTLAMNA 382 (393)
T ss_dssp EETTEE-EEEEEEECC-------
T ss_pred eccCCc-eEeeeEcCCCCccccc
Confidence 998887 9999999999988653
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=4e-39 Score=361.97 Aligned_cols=322 Identities=20% Similarity=0.297 Sum_probs=263.4
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|.|||||.+|+++.+++++++.++||+|+++++++.+++ ..|||+||+.|++..++.+++++++++||++|++||+|
T Consensus 84 ~~v~aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~ 163 (433)
T 4f11_A 84 PNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD 163 (433)
T ss_dssp CCCSEEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 48999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||+...+.|.+.+++.|+||+..+.++. |+.+++.+|+++++|+|++++...++..++++|+++|+...+|
T Consensus 164 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (433)
T 4f11_A 164 VQRFSEVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKY 236 (433)
T ss_dssp SHHHHHHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTC
T ss_pred chhhHHHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCe
Confidence 999999999999999999999999888753 5778999999999999999999999999999999999988889
Q ss_pred EEEEeCccccccc--------CCCCCChhhhhhccccEEEEEeCCCc--------hhhHHHHHHHhhh-cCCCCCCCcch
Q 003167 162 VWIATTWLSTFID--------SKSPLSLKTAKSILGALTLRQHTPDS--------KRRRDFVSRWNTL-SNGSIGLNPYG 224 (843)
Q Consensus 162 ~~i~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~ 224 (843)
+||.+++....+. ..........+.++|++++.++.+.. +..++|.++|+++ ++ ..++.++
T Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--~~~~~~a 314 (433)
T 4f11_A 237 QWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--VGPSKFH 314 (433)
T ss_dssp EEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT--SCCCTTH
T ss_pred EEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC--CCcccch
Confidence 9999998433221 11112234567899999998876532 3478899999987 44 5577889
Q ss_pred hhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccC
Q 003167 225 LYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLH 304 (843)
Q Consensus 225 ~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~ 304 (843)
+++||||+++|+|+++++.+..... .+.. +.......+.++++|+++|++++|+|++|+|+| ++|++.
T Consensus 315 ~~~YDAv~~la~Al~~a~~~~~~~~---------~~~~-l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~- 382 (433)
T 4f11_A 315 GYAYDGIWVIAKTLQRAMETLHASS---------RHQR-IQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM- 382 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS---------SCCC-GGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccC---------CCCc-ccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-
Confidence 9999999999999999875421100 0000 010111223458999999999999999999999 899965
Q ss_pred CcEEEEEeeecCceeeeeeecCCCC-CcccCCcccccCCCCCCCCCCccceeeeCCCcccC
Q 003167 305 PSYDIINVIEHGYPQQIGYWSNYSG-LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSK 364 (843)
Q Consensus 305 ~~~~I~~~~~~~~~~~VG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~ 364 (843)
..|+|++++++.. ++||+|++... |. ...+.|.|||+.++.
T Consensus 383 ~~~~I~~~~~g~~-~~VG~~~~~~~~l~------------------~~~~~i~W~~~~~P~ 424 (433)
T 4f11_A 383 GTIKFTQFQDSRE-VKVGEYNAVADTLE------------------IINDTIRFQGSEPPK 424 (433)
T ss_dssp CEEEEEEEETTEE-EEEEEEETTTTEEE------------------ECTTTCCCSSSSCCC
T ss_pred eeEEEEEEECCce-EEEEEEECCCCeEE------------------EeCCceECCCCCCCC
Confidence 8999999988655 99999986431 11 223468999987543
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.6e-38 Score=365.53 Aligned_cols=322 Identities=20% Similarity=0.314 Sum_probs=262.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
+++|+|||||.+|+++.+++++++.+++|+|+++++++.|++ .+||||||+.|+|..|+.++++++++|||+||++|++
T Consensus 115 ~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~ 194 (555)
T 2e4u_A 115 PLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVAS 194 (555)
T ss_dssp CCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 468999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
|++||+...+.|++++++.|+||++.+.++.. .+..|+..++.+|++ +++||||+++...++..+++++.++|+
T Consensus 195 d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~--- 269 (555)
T 2e4u_A 195 EGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA--- 269 (555)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---
T ss_pred eChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---
Confidence 99999999999999999999999999999864 348899999999965 799999999999999999999999886
Q ss_pred ceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHH---------------HHHHHhhhcCCCC------
Q 003167 160 GYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRD---------------FVSRWNTLSNGSI------ 218 (843)
Q Consensus 160 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------------f~~~~~~~~~~~~------ 218 (843)
+++||++++|....... ....+.++|++++.++..+.|.+++ |.+.|+++|++..
T Consensus 270 ~~~~i~s~~~~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~ 345 (555)
T 2e4u_A 270 SFTWVASDGWGAQESIV----KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNH 345 (555)
T ss_dssp CCEEEECTTTTTCGGGT----TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC-----
T ss_pred CeEEEEeccccccchhh----ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCcc
Confidence 68999998876542221 1224568999999887666555554 4455777776421
Q ss_pred ---------------CCCcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHH-HH
Q 003167 219 ---------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLA-NI 282 (843)
Q Consensus 219 ---------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l 282 (843)
.+..+++.+||||+++|+||+++..+.... ....|...... ++++|++ +|
T Consensus 346 ~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~~~~L 411 (555)
T 2e4u_A 346 RQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ-------------TTKLCDAMKIL-DGKKLYKEYL 411 (555)
T ss_dssp -CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT-------------CSSCCGGGTSC-CHHHHHHHHT
T ss_pred CCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC-------------CCccccccCCC-CcccccHHhH
Confidence 134578899999999999999987531110 00112222223 4899999 99
Q ss_pred HhcccC------Cccee-eEeccCCCccCCcEEEEEeee---cCceeeeeeecCCCCCcccCCcccccCCCCCCCCCCcc
Q 003167 283 LQTNMT------GLSGP-IHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHL 352 (843)
Q Consensus 283 ~~~~f~------G~tG~-v~fd~~G~~~~~~~~I~~~~~---~~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l 352 (843)
++++|. |++|+ |.||++|++ ...|+|+|++. +..+++||.|++ .|. .+.
T Consensus 412 ~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l~------------------i~~ 470 (555)
T 2e4u_A 412 LKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TLS------------------LDV 470 (555)
T ss_dssp TCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--SEE------------------CCG
T ss_pred hceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--eEE------------------Eec
Confidence 999999 99997 999999995 58999999962 224599999984 222 234
Q ss_pred ceeeeCCCcccCCcccc
Q 003167 353 YSVVWPGGVTSKPRGWV 369 (843)
Q Consensus 353 ~~i~Wpg~~~~~p~~~~ 369 (843)
..|.|++ .++|.+.|
T Consensus 471 ~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 471 DSIHWSR--NSVPTSQC 485 (555)
T ss_dssp GGCCCTT--SSCCCCCS
T ss_pred cccccCC--CCCcceee
Confidence 5689987 57888877
No 11
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=7.1e-39 Score=362.21 Aligned_cols=299 Identities=19% Similarity=0.314 Sum_probs=246.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|+|||||.+|+++.+++++++.+++|+|++++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 115 ~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~d 194 (479)
T 3sm9_A 115 LLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASE 194 (479)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57999999999999999999999999999999999999998 57999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHH-HHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
++||+...+.|++++++.|+||++.+.++.. .+..|+..++ +.|+++++||||++++..++..++++++++|+.
T Consensus 195 d~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~--- 269 (479)
T 3sm9_A 195 GDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS--- 269 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---
T ss_pred chhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---
Confidence 9999999999999999999999999999875 4578999999 678899999999999999999999999999985
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHH---------------HHhhhcCCCC-------
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVS---------------RWNTLSNGSI------- 218 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~---------------~~~~~~~~~~------- 218 (843)
++||++++|........ .....++|++++.++..+.|.+++|+. .|+..|++..
T Consensus 270 ~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~ 345 (479)
T 3sm9_A 270 FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHR 345 (479)
T ss_dssp CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CS
T ss_pred EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccc
Confidence 79999998865321111 122567999999999999999888764 3666665310
Q ss_pred --------------CCCcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHH-HHHH
Q 003167 219 --------------GLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFL-ANIL 283 (843)
Q Consensus 219 --------------~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~ 283 (843)
.........|||||++|+||+++..+... .....|.....+ ++++|+ ++|+
T Consensus 346 ~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~-------------~~~~~c~~~~~~-~~~qL~~~~Lk 411 (479)
T 3sm9_A 346 RVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP-------------NTTKLCDAMKIL-DGKKLYKDYLL 411 (479)
T ss_dssp CBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST-------------TCSSCCHHHHSC-CHHHHHHHTGG
T ss_pred cCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC-------------CCCcCCCCCCCc-ChHHHHHHHhc
Confidence 01123468999999999999999763111 011123332334 389999 9999
Q ss_pred hcccCCc------ce-eeEeccCCCccCCcEEEEEeee---cCceeeeeeec
Q 003167 284 QTNMTGL------SG-PIHFNQDRSLLHPSYDIINVIE---HGYPQQIGYWS 325 (843)
Q Consensus 284 ~~~f~G~------tG-~v~fd~~G~~~~~~~~I~~~~~---~~~~~~VG~w~ 325 (843)
+++|.+. +| +|.||++|+ ....|+|+||+. ...+++||.|+
T Consensus 412 ~v~F~~~~~~~~~~g~~v~fd~~G~-~~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 412 KINFTAPFNPNKDADSIVKFDTFGD-GMGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp GCCEECTTC-----CCEECCCTTCB-CCCCEEEEEEEESSSCEEEEEEEEES
T ss_pred ceeeccccCccccCCCeEEECCCCC-cccceEEEEEEECCCcEEEEEEEEEe
Confidence 9999998 55 699999999 468999999973 23458999997
No 12
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.6e-38 Score=361.04 Aligned_cols=324 Identities=19% Similarity=0.321 Sum_probs=253.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
+++|+|||||.+|+++.+++++++.+++|+|++++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++
T Consensus 126 ~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~ 205 (496)
T 3ks9_A 126 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT 205 (496)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 468999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
|++||+...+.+++++++.|+||++.+.++.. .+..|+..++++|+++ +++||++++...++..+++++++.|+..
T Consensus 206 dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~ 283 (496)
T 3ks9_A 206 EGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG 283 (496)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS
T ss_pred ccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999988765 5688999999999985 8999999999989999999999999853
Q ss_pred cceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHH---------------HhhhcCCCCCC---
Q 003167 159 SGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---------------WNTLSNGSIGL--- 220 (843)
Q Consensus 159 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~---------------~~~~~~~~~~~--- 220 (843)
.+.||++++|........ .....++|++++.++.++.|.+++|.+. |+..|++....
T Consensus 284 -k~~~i~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~ 358 (496)
T 3ks9_A 284 -EFSLIGSDGWADRDEVIE----GYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLL 358 (496)
T ss_dssp -CCEEEECTTTTTCHHHHT----TCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC---
T ss_pred -cEEEEEechhcccccccc----ccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcc
Confidence 358999988864322111 1335689999999999999999988643 66666531100
Q ss_pred ---------------------CcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHH
Q 003167 221 ---------------------NPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFL 279 (843)
Q Consensus 221 ---------------------~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (843)
.......|+|||++|+||+++..+.... ....|.....+. +++|+
T Consensus 359 ~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~-------------~~~~c~~~~~~~-~~qL~ 424 (496)
T 3ks9_A 359 ENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG-------------HVGLCDAMKPID-GSKLL 424 (496)
T ss_dssp --CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT-------------CSSCCGGGSSCC-HHHHH
T ss_pred ccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCC-------------CCCCCcCCCCCC-HHHHH
Confidence 0112459999999999999997532110 111344334453 89999
Q ss_pred HHHHhcccCCccee-eEeccCCCccCCcEEEEEeee----cCceeeeeeecCCCCCcccCCcccccCCCCCCCCCCccce
Q 003167 280 ANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIE----HGYPQQIGYWSNYSGLSVVPPEKLYRKPANRSSSNQHLYS 354 (843)
Q Consensus 280 ~~l~~~~f~G~tG~-v~fd~~G~~~~~~~~I~~~~~----~~~~~~VG~w~~~~gl~~~~~~~~~~~~~~~~~~~~~l~~ 354 (843)
++|++++|.+.+|+ |.||++|+ ....|+|+||+. ...+++||.|++ ..|. ++...
T Consensus 425 ~~Lk~v~f~~~~g~~v~fd~~gd-~~~~YdI~n~~~~~~~~~~~~~VG~~~~-~~l~------------------i~~~~ 484 (496)
T 3ks9_A 425 DFLIKSSFIGVSGEEVWFDEKGD-APGRYDIMNLQYTEANRYDYVHVGTWHE-GVLN------------------IDDYK 484 (496)
T ss_dssp HHHHTCEEECTTSCEEECCTTSC-CCCEEEEEEEEECC--CEEEEEEEEEET-TEEE------------------ECTTT
T ss_pred HHHHhcCCcCCCCCEEEECCCCC-ccceEEEEEEEECCCCCEEEEEEEEEeC-CeEE------------------Eehhh
Confidence 99999999999995 99999999 568999999973 234589999973 1122 12234
Q ss_pred eeeCCCcccCCcc
Q 003167 355 VVWPGGVTSKPRG 367 (843)
Q Consensus 355 i~Wpg~~~~~p~~ 367 (843)
| |.++..++|+|
T Consensus 485 i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 485 I-QMNKSGLVPRG 496 (496)
T ss_dssp C------------
T ss_pred c-ccCCCCCCCCC
Confidence 5 88777777764
No 13
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.1e-38 Score=352.38 Aligned_cols=281 Identities=22% Similarity=0.323 Sum_probs=228.7
Q ss_pred CCCeEEEEc-----CCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEE
Q 003167 2 ETDTLAIVG-----PQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEV 75 (843)
Q Consensus 2 ~~~V~aiiG-----p~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v 75 (843)
+++|+|||| |.+|.++.+++++++.+++|+|+++++++.+++ ..|||+||+.|++..|+.+++++++++||+||
T Consensus 63 ~~~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v 142 (384)
T 3qek_A 63 SSQVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHV 142 (384)
T ss_dssp GGTEEEEEECC--------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEE
T ss_pred HcCceEEEEecCCCCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEE
Confidence 468999999 678888999999999999999999999999998 67899999999999999999999999999999
Q ss_pred EEEEecCCCCcchHHHHHHHHHhcCcEE-----------EEe-------eecCCCCCCChhHHHHHHHHHhcCCCeEEEE
Q 003167 76 IAIFNDDDQGRNGVTALGDKLAEIRCKI-----------SYK-------SALPPDQSVTETDVRNELVKVRMMEARVIVV 137 (843)
Q Consensus 76 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v-----------~~~-------~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~ 137 (843)
++||+|++||++..+.|++++++.|+++ .+. +.++.. ..++.|+.++|.+|+++++|+|++
T Consensus 143 ~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~d~~~~l~~i~~~~~~vii~ 221 (384)
T 3qek_A 143 ILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQF-EPGTKNLTALLLEAKELEARVIIL 221 (384)
T ss_dssp EEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEE-CTTCSCCHHHHHHHHTSSCCEEEE
T ss_pred EEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceeccc-CCchhhHHHHHHHHHhcCCcEEEE
Confidence 9999999999999999999999999753 322 222110 023678999999999999999999
Q ss_pred EcChhhHHHHHHHHHHcCCcccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCC
Q 003167 138 HGYSRTGLMVFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGS 217 (843)
Q Consensus 138 ~~~~~~~~~i~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 217 (843)
+++..++..++++|+++||++.+|+||+++++... ....+.++|++++..+.++.
T Consensus 222 ~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~----------------- 276 (384)
T 3qek_A 222 SASEDDATAVYKSAAMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN----------------- 276 (384)
T ss_dssp ECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC-----------------
T ss_pred ECCHHHHHHHHHHHHHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc-----------------
Confidence 99999999999999999998888999999976532 12346689999999876543
Q ss_pred CCCCcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccC-CCcccccchHHHHHHHHhccc-CCcceeeE
Q 003167 218 IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNL-GALSIFDGGKKFLANILQTNM-TGLSGPIH 295 (843)
Q Consensus 218 ~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~f-~G~tG~v~ 295 (843)
.++++||||+++|+|++++..+.... .....| ....+|..+..|.+++++++| +|++|+++
T Consensus 277 -----~~~~~YdAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~ 339 (384)
T 3qek_A 277 -----ESAHISDAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIE 339 (384)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEEC
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceE
Confidence 26789999999999999997653211 011123 234567779999999999998 99999999
Q ss_pred eccCCCccCCcEEEEEeeecCceeeeeeecC
Q 003167 296 FNQDRSLLHPSYDIINVIEHGYPQQIGYWSN 326 (843)
Q Consensus 296 fd~~G~~~~~~~~I~~~~~~~~~~~VG~w~~ 326 (843)
||++|++....|+|+|+++++. ++||+|++
T Consensus 340 fd~~G~~~~~~~~I~~~~~~~~-~~VG~w~~ 369 (384)
T 3qek_A 340 FNEDGDRKFAQYSIMNLQNRKL-VQVGIFNG 369 (384)
T ss_dssp BCTTSCBCSCCEEEEEEETTEE-EEEEEECS
T ss_pred ECCCCCCCcccEEEEEEcCCce-EEEEEEeC
Confidence 9999998789999999998777 99999983
No 14
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=3.2e-38 Score=354.97 Aligned_cols=319 Identities=16% Similarity=0.204 Sum_probs=259.6
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEE---
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI--- 78 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii--- 78 (843)
++|.|||||.+|+++.+++++++.+++|+|+++++++.|++ ..|||+||+.|++..|+.+++++++++||++|++|
T Consensus 76 ~~v~aviG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~ 155 (435)
T 1dp4_A 76 HSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYA 155 (435)
T ss_dssp HCCSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred cCceEEECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 58999999999999999999999999999999999999998 46999999999999999999999999999999999
Q ss_pred ---EecCCCCcchHHHHHHHHHh-cCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 79 ---FNDDDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 79 ---~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
++|++|| ..++.+.+++.+ .|+||+..+.++.+ ..|+..++++|++ ++|+|++++...++..++++|+++
T Consensus 156 d~~~~~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~ 229 (435)
T 1dp4_A 156 DRLGDDRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNA 229 (435)
T ss_dssp CCSSSCCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHT
T ss_pred cCCCCcchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHc
Confidence 7778888 566778888888 99999988766444 7899999999999 999999999999999999999999
Q ss_pred CCcccceEEEEeCccccccc---------CC---CCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCC----C-
Q 003167 155 GMMDSGYVWIATTWLSTFID---------SK---SPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNG----S- 217 (843)
Q Consensus 155 g~~~~~~~~i~~~~~~~~~~---------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~----~- 217 (843)
|+...+++||.++++..... .. ....+...+.++|++++.+..|+.+..++|.++|+++++. .
T Consensus 230 g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 309 (435)
T 1dp4_A 230 GLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTV 309 (435)
T ss_dssp TCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCccc
Confidence 99777799999987654321 00 0001234567889998888888889999999999877631 1
Q ss_pred --CCCCcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeE
Q 003167 218 --IGLNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIH 295 (843)
Q Consensus 218 --~~~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~ 295 (843)
..++.+++++||||+++|+||+++..+++. ..++++|+++|++++|+|++|++.
T Consensus 310 ~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~ 365 (435)
T 1dp4_A 310 EDGLKNIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLK 365 (435)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEE
Confidence 125668899999999999999998654221 114899999999999999999999
Q ss_pred eccCCCccCCcEEEEEee-ecCceeeeeeecCCCC-CcccCCcccccCCCCCCCCCCccceeeeCCCcccCCcccc
Q 003167 296 FNQDRSLLHPSYDIINVI-EHGYPQQIGYWSNYSG-LSVVPPEKLYRKPANRSSSNQHLYSVVWPGGVTSKPRGWV 369 (843)
Q Consensus 296 fd~~G~~~~~~~~I~~~~-~~~~~~~VG~w~~~~g-l~~~~~~~~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~~~ 369 (843)
||++|++. ..|+|+++. .++.++.||.|++..+ +.+ .+...|+||++..+...+-|
T Consensus 366 fd~~g~~~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~-----------------~~~~~i~W~~~~~P~~~p~C 423 (435)
T 1dp4_A 366 IDRNGDRD-TDFSLWDMDPETGAFRVVLNYNGTSQELMA-----------------VSEHKLYWPLGYPPPDVPKC 423 (435)
T ss_dssp ECTTSBBC-CCEEEEEECTTTCCEEEEEEECTTTCCEEE-----------------STTCCCCCTTSSCCCSSCTT
T ss_pred ECCCCCcc-ceeEEEEecCCCCcEEEEEEecCCCceEEE-----------------cCCceeeCCCCCCCCCCCCC
Confidence 99999965 799999993 2344599999987653 110 12357899987443333333
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.5e-38 Score=357.58 Aligned_cols=301 Identities=19% Similarity=0.359 Sum_probs=220.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|+|||||.+|+++.+++++++.+++|+|++++++|.|++ .+||||||+.|+|..|+.++++++++|||+||++|++|
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d 195 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASE 195 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEc
Confidence 68999999999999999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHh-cCcEEEEeeecCCCCCCChh--HHHHHHHHHh-cCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 82 DDQGRNGVTALGDKLAE-IRCKISYKSALPPDQSVTET--DVRNELVKVR-MMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~--d~~~~l~~i~-~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
++||+...+.|++++++ .|+||++.+.++.. .... |+..++.+|+ ++++||||+++...++..+++++++.|+.
T Consensus 196 ~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~--~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~ 273 (481)
T 3mq4_A 196 GSYGEKGVESFTQISKEAGGLSIAQSVRIPQE--RKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQV 273 (481)
T ss_dssp CHHHHHHHHHHHHCC---CCCEECCCCCCCCC--------CCSHHHHCCCCC----CEEECCCSSHHHHHC---------
T ss_pred chhHHHHHHHHHHHHHHhCCEEEEEEEEcCCC--CccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCC
Confidence 99999999999999885 79999999888765 2233 8889999998 58999999999999999999999999985
Q ss_pred ccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHH---------------HhhhcCCCCC---
Q 003167 158 DSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSR---------------WNTLSNGSIG--- 219 (843)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~---------------~~~~~~~~~~--- 219 (843)
. .++||+++.|....... ......++|++++.++..+.|.+++|+.. |+..|++...
T Consensus 274 ~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~ 348 (481)
T 3mq4_A 274 G-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISG 348 (481)
T ss_dssp --CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC----
T ss_pred c-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCcc
Confidence 3 38999999886543221 12346789999999999999999888643 5555543210
Q ss_pred -----------------------CCcchhhHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchH
Q 003167 220 -----------------------LNPYGLYAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGK 276 (843)
Q Consensus 220 -----------------------~~~~~~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (843)
........|||||++|+||+++..+.... ....|.....+ +++
T Consensus 349 ~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~-------------~~~~c~~~~~~-~~~ 414 (481)
T 3mq4_A 349 SKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD-------------YRGVCPEMEQA-GGK 414 (481)
T ss_dssp --------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCHHHHTS-CHH
T ss_pred ccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC-------------CCCCCCCCCCc-CHH
Confidence 01334569999999999999987532110 11133333334 389
Q ss_pred HHHHHHHhcccCCcce-eeEeccCCCccCCcEEEEEee--e--cCceeeeeeec
Q 003167 277 KFLANILQTNMTGLSG-PIHFNQDRSLLHPSYDIINVI--E--HGYPQQIGYWS 325 (843)
Q Consensus 277 ~l~~~l~~~~f~G~tG-~v~fd~~G~~~~~~~~I~~~~--~--~~~~~~VG~w~ 325 (843)
+|+++|++++|.+.+| .|.||++|+ ....|+|+||+ + ...+++||.|+
T Consensus 415 qL~~~Lk~v~F~~~~G~~v~fd~~Gd-~~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 415 KLLKYIRNVNFNGSAGTPVMFNKNGD-APGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp HHHHHHHTCEEECTTSSEEECCTTSC-CCCEEEEEEEC-----CCCEEEEEEEE
T ss_pred HHHHHHhcceeecCCCCEEEECCCCC-CceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 9999999999999999 699999999 56999999997 2 22448999997
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=9.3e-38 Score=340.03 Aligned_cols=282 Identities=15% Similarity=0.260 Sum_probs=224.7
Q ss_pred CCeEEEEc-CCChHHHHH--HHHhcccCCCcEEecccCCC-CCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEE
Q 003167 3 TDTLAIVG-PQSAVMAHV--LSHLANELQVPLLSFTALDP-TLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIA 77 (843)
Q Consensus 3 ~~V~aiiG-p~~S~~~~a--v~~~~~~~~vP~Is~~at~~-~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~i 77 (843)
++|.|||| |.++..+.+ ++.+++.++||+||+++++| .|++ .+||||||+.|+|..|+.++++++++|||++|++
T Consensus 62 ~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~i 141 (364)
T 3qel_B 62 RKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSI 141 (364)
T ss_dssp SCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 47989885 555444555 99999999999999999998 8998 6799999999999999999999999999999999
Q ss_pred EEecCCCCcchHHHHHHHHHhc--Cc--EEEEeeecCCCCCCChhHHHHHH-HHHhcCCCeEEEEEcChhhHHHHHHHHH
Q 003167 78 IFNDDDQGRNGVTALGDKLAEI--RC--KISYKSALPPDQSVTETDVRNEL-VKVRMMEARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 78 i~~d~~~g~~~~~~l~~~l~~~--g~--~v~~~~~~~~~~~~~~~d~~~~l-~~i~~~~~~viv~~~~~~~~~~i~~~a~ 152 (843)
||+|+ .+.+.|.+.+++. |. |+.+...++.. .+..++...+ ++|++++++|||++++.+.+..++++|.
T Consensus 142 I~~d~----~g~~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~ 215 (364)
T 3qel_B 142 VTTYF----PGYQDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVAN 215 (364)
T ss_dssp EEESC----TTHHHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHH
T ss_pred EEeCC----ccHHHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHH
Confidence 99884 3455666666665 54 88777766554 3356778888 6999999999999999999999999999
Q ss_pred HcCCcccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHH
Q 003167 153 RLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 232 (843)
Q Consensus 153 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~ 232 (843)
++||+.++|+||+++.+....+... .+...|++++++.. |++ .+.+++||||+
T Consensus 216 ~~g~~~~~y~wI~t~~~~~~~~~~~------~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~ 268 (364)
T 3qel_B 216 SVGLTGYGYTWIVPSLVAGDTDTVP------SEFPTGLISVSYDE------------WDY---------GLPARVRDGIA 268 (364)
T ss_dssp TTTCSSTTCEEEECHHHHCSTTCCC------TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHH
T ss_pred HcCCCCCCeEEEEecccccCccccc------ccCCCceEEEeecc------------chh---------hHHHHHHHHHH
Confidence 9999999999999987644433211 24567888877643 432 24678999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcc--cccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEE
Q 003167 233 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALS--IFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDII 310 (843)
Q Consensus 233 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~ 310 (843)
++|+|++++..+.... .....+|.... +|.+|..|+++|++++|+|+ +++||++|++.++.|+|+
T Consensus 269 ~~A~A~~~~~~~~~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Ii 335 (364)
T 3qel_B 269 IITTAASDMLSEHSFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVII 335 (364)
T ss_dssp HHHHHHHHHHTTTSCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEE
T ss_pred HHHHHHHHHHhccCCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEE
Confidence 9999999986643221 11233455443 56789999999999999998 899999999999999999
Q ss_pred Eee-ecCceeeeeeecCCCCCcc
Q 003167 311 NVI-EHGYPQQIGYWSNYSGLSV 332 (843)
Q Consensus 311 ~~~-~~~~~~~VG~w~~~~gl~~ 332 (843)
|++ +.++ ++||+|++ .||.+
T Consensus 336 nl~~~~~~-~~VG~W~~-~~L~~ 356 (364)
T 3qel_B 336 LLNKERKW-ERVGKWKD-KSLQM 356 (364)
T ss_dssp EECTTSCE-EEEEEECS-SCEEE
T ss_pred EEcCCCCc-EEEEEECC-CeEEe
Confidence 998 4566 99999984 34544
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.97 E-value=9.2e-31 Score=287.24 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=235.2
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|.+||||.+|+++.++++++++++||+|+++++++.++.. .||+||+.+++..++.+++++++..+|++|++|+.|
T Consensus 70 ~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~ 148 (371)
T 4f06_A 70 KEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSD 148 (371)
T ss_dssp TSCCSEEEECCSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCCEEEEecccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCC
Confidence 4699999999999999999999999999999999999988764 489999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC-hhhHHHHHHHHHHcCCcccc
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~-~~~~~~i~~~a~~~g~~~~~ 160 (843)
++||+...+.+++.+++.|++|+..+.++.+ ++|+++++.+|++++||+|++... ..++..+++++++.|+...+
T Consensus 149 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (371)
T 4f06_A 149 YGPGIDAETAFKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGG 224 (371)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTT
T ss_pred cccchhHHHHHHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccC
Confidence 9999999999999999999999999999887 789999999999999999987765 46778899999999987766
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC--CchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARAL 238 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al 238 (843)
..++.++........ ....+...|++...++.+ ++|..++|.++|+++++....++.+++.+|||++++++|+
T Consensus 225 ~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai 299 (371)
T 4f06_A 225 VKLMSTGDVVTEPDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMI 299 (371)
T ss_dssp CEEEEEGGGGCGGGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecccCCHHHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHH
Confidence 666666543322111 233456778887776544 5688999999999998755567789999999999999999
Q ss_pred HHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeee
Q 003167 239 KLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIE 314 (843)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~ 314 (843)
++.... . ++++++++|++++|+|++|+++||++++.....+.|.++++
T Consensus 300 ~~~ag~---------------------------~-d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~ 347 (371)
T 4f06_A 300 EATSGK---------------------------S-DPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEK 347 (371)
T ss_dssp HHTTTS---------------------------C-CHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEE
T ss_pred HHhcCC---------------------------C-CHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEe
Confidence 874111 1 48999999999999999999999988776677788888863
No 18
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.97 E-value=6.3e-31 Score=290.59 Aligned_cols=292 Identities=12% Similarity=0.100 Sum_probs=243.3
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|.+||||.+|..+.++++++++++||+|+++++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 72 ~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (387)
T 3i45_A 72 HGVHALAGTFLSHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPN 151 (387)
T ss_dssp HCCSEEEECCSHHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCS
T ss_pred cCCEEEECCcchHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 48999999999999999999999999999999999998885 67899999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhc--CcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 82 DDQGRNGVTALGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
++||+...+.+++.+++. |++++....++.+ ..|+.+.+++|++.++|+|++++...++..+++++++.|+...
T Consensus 152 ~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~ 227 (387)
T 3i45_A 152 YEYGQSAVARFKELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG 227 (387)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT
T ss_pred chHhHHHHHHHHHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC
Confidence 999999999999999998 9999988877766 6789999999999999999999999999999999999998532
Q ss_pred ceEEEEeCcccccccCCCCCChhhhhhccccEEEEE-e-CCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHH
Q 003167 160 GYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQ-H-TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 237 (843)
Q Consensus 160 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~A 237 (843)
+++.+...... .... ....+..+|++.... + .++.|..++|.++|+++|+ ..++.+++.+|||++++++|
T Consensus 228 --~~i~~~~~~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~Yda~~~~a~A 299 (387)
T 3i45_A 228 --RQVVSMLTGEP-EYLN---PLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--EDPFVGSLVGYNTLTAMAVA 299 (387)
T ss_dssp --CEEEEEEEESH-HHHG---GGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHH
T ss_pred --CeEEeecCCCh-HHHH---HhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHH
Confidence 44444322111 0000 111234678776532 2 3578999999999999986 45678999999999999999
Q ss_pred HHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee-ecC
Q 003167 238 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHG 316 (843)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~-~~~ 316 (843)
+++++.. ++++|+++|++++|+|++|+++||+++.+......|.++. +++
T Consensus 300 l~~ag~~-----------------------------~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g 350 (387)
T 3i45_A 300 FEKAGGT-----------------------------ESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDG 350 (387)
T ss_dssp HHHHTSC-----------------------------CHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETT
T ss_pred HHHhCCC-----------------------------CHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCC
Confidence 9997321 4899999999999999999999997444467778888876 566
Q ss_pred ceeeeeeecCCCCCcccCCc
Q 003167 317 YPQQIGYWSNYSGLSVVPPE 336 (843)
Q Consensus 317 ~~~~VG~w~~~~gl~~~~~~ 336 (843)
. ..++.|....|..+..|.
T Consensus 351 ~-~~i~~w~~~~~~~~~p~~ 369 (387)
T 3i45_A 351 K-GVMVDWRYVDGGSVLPPP 369 (387)
T ss_dssp E-EEEEEEEEECGGGGSCCH
T ss_pred c-eeEEeeEEeCchhcCCCH
Confidence 6 899999988877665553
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.97 E-value=1.5e-30 Score=285.37 Aligned_cols=278 Identities=16% Similarity=0.188 Sum_probs=238.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHH-HHcCCcEEEEEEe-
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN- 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll-~~~~w~~v~ii~~- 80 (843)
++|.+||||.+|..+.++++++++++||+|++.++++.+++ .+||+||+.|++..++.++++++ +++||++|++||.
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~ 158 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDV 158 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEET
T ss_pred CCeEEEEccCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeC
Confidence 46999999999999999999999999999999998888865 56999999999999999999998 5689999999987
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+++||....+.+.+++++.|++++... ++.+ ..|+...++++++.++|+|++.+...++..+++++++.|+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~-- 231 (366)
T 3td9_A 159 EQDYSVGLSNFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG-- 231 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS--
T ss_pred CCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc--
Confidence 788999999999999999999999887 7766 678999999999999999999999999999999999999853
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCC---chhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPD---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 237 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~A 237 (843)
.|+.++++.... . .....+..+|++....+.+. .|..++|.++|+++|+ ..++.+++.+|||++++++|
T Consensus 232 -~~~~~~~~~~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~yda~~~~~~a 303 (366)
T 3td9_A 232 -YILAGDGADAPE-L----IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--KEPAALNALGYDAYMVLLDA 303 (366)
T ss_dssp -EEEECGGGCSTH-H----HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHH
T ss_pred -eEEeeCCcCCHH-H----HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--CCCchhHHHHHHHHHHHHHH
Confidence 577766543211 1 02234567898888766554 6789999999999997 45688999999999999999
Q ss_pred HHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcc-cCCcceeeEeccCCCccCCcEEEEEeeecC
Q 003167 238 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN-MTGLSGPIHFNQDRSLLHPSYDIINVIEHG 316 (843)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~ 316 (843)
+++++.. +++.|.++|++++ |+|++|+++||++|++. ..+.|++++++.
T Consensus 304 l~~ag~~-----------------------------~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~ 353 (366)
T 3td9_A 304 IERAGSF-----------------------------DREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGS 353 (366)
T ss_dssp HHHHTSC-----------------------------CHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTE
T ss_pred HHHhCCC-----------------------------CHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCE
Confidence 9997321 4899999999998 99999999999999865 569999998666
Q ss_pred ceeeeeeecCC
Q 003167 317 YPQQIGYWSNY 327 (843)
Q Consensus 317 ~~~~VG~w~~~ 327 (843)
+ +.||.|++.
T Consensus 354 ~-~~v~~~~~~ 363 (366)
T 3td9_A 354 V-DFEAVINPD 363 (366)
T ss_dssp E-EEEEEECGG
T ss_pred E-EEEEecChh
Confidence 5 999999864
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.97 E-value=2.9e-30 Score=284.00 Aligned_cols=271 Identities=13% Similarity=0.109 Sum_probs=234.3
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|.+||||.+|..+.+++++++++++|+|+++++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 149 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTAD 149 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecc
Confidence 78999999999999999999999999999999999998887 56899999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||+...+.+++.+++.|++|+..+.++.+ ..|+.+.+.++++.++|+|++.+...++..++++++++|+..+.
T Consensus 150 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~- 224 (375)
T 3i09_A 150 YAFGKALEKNTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM- 224 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-
T ss_pred cHHHHHHHHHHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-
Confidence 9999999999999999999999988888776 67899999999999999999999999999999999999997765
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCC-chhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKL 240 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~ 240 (843)
.++..+.+...+. ....+..+|++...++.++ .|..++|.++|+++|+ ..++.+++.+|||++++++|+++
T Consensus 225 ~i~g~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~~~~Al~~ 296 (375)
T 3i09_A 225 KLAALLMFINDVH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--KMPSSLQAADYSSVTTYLKAVQA 296 (375)
T ss_dssp EEEESSCCHHHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecccchhhHh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 4444433322111 1123567888877766543 6889999999999997 45678999999999999999999
Q ss_pred HhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecC
Q 003167 241 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 316 (843)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~ 316 (843)
++.. ++++|.++|++++|+|++|.++||++|++. ..+.|+++++++
T Consensus 297 ag~~-----------------------------~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 297 AGST-----------------------------DSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp HTSC-----------------------------CHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred hCCC-----------------------------CHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 7321 489999999999999999999999999864 678899997554
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.97 E-value=5.9e-30 Score=279.47 Aligned_cols=282 Identities=14% Similarity=0.124 Sum_probs=239.4
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHH-HHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll-~~~~w~~v~ii~~ 80 (843)
+++|++||||.+|..+.++++++++.+||+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 146 (356)
T 3ipc_A 67 ADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHD 146 (356)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HCCCcEEEcCCCcHHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 368999999999999999999999999999999999999988778999999999999999999965 5679999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+++||+...+.+++++++.|++++....++.+ ..|+...++++++.++|+|+++++..++..+++++++.|+..
T Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~-- 220 (356)
T 3ipc_A 147 KTPYGQGLADETKKAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA-- 220 (356)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC--
T ss_pred CChHHHHHHHHHHHHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC--
Confidence 99999999999999999999999887777766 678899999999999999999999999999999999999864
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC-CchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP-DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.|+.++++... ... .......+|++...++.+ ..|..++|.++|+++ + ..++.+++.+|||++++++|++
T Consensus 221 -~~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~ 291 (356)
T 3ipc_A 221 -KLVSGDGIVSN-ELA----SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAK 291 (356)
T ss_dssp -EEEECGGGCSH-HHH----HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHH
T ss_pred -cEEEeccccCH-HHH----HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHH
Confidence 57776654322 110 123356788887766554 458899999999988 5 3467799999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeec--Cc
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEH--GY 317 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~--~~ 317 (843)
+++.. +++.|.++|++.+|+|++|+++||++|++....+.|++++++ |.
T Consensus 292 ~ag~~-----------------------------~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~ 342 (356)
T 3ipc_A 292 AAGSV-----------------------------EPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGK 342 (356)
T ss_dssp HHTCC-----------------------------CHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSS
T ss_pred HhCCC-----------------------------CHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCc
Confidence 97321 489999999999999999999999999988789999999964 66
Q ss_pred eeeeeeecCC
Q 003167 318 PQQIGYWSNY 327 (843)
Q Consensus 318 ~~~VG~w~~~ 327 (843)
|+.+..|.+.
T Consensus 343 ~~~~~~~~~~ 352 (356)
T 3ipc_A 343 FTYIQQGSHH 352 (356)
T ss_dssp EEEEEC----
T ss_pred EEEEeccccc
Confidence 6999988653
No 22
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.97 E-value=1.4e-30 Score=291.08 Aligned_cols=286 Identities=12% Similarity=0.044 Sum_probs=228.5
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCC-----C-CCCCceEEcCCChHHhHHHHHHHHHHc-----
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-----P-LQYPFFVQTAPNDLYLMSAIAEMVSYF----- 70 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls-----~-~~~p~~fR~~p~d~~~~~ai~~ll~~~----- 70 (843)
+++|.+||||.+|..+.++++++++++||+|+++ +++.++ + ..|+|+||+.|++..++.+++++++++
T Consensus 81 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~ 159 (419)
T 3h5l_A 81 RDNASALIAGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGE 159 (419)
T ss_dssp TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhcc
Confidence 3799999999999999999999999999999964 443332 2 468999999999999999999999876
Q ss_pred ---CCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC-hhhHHH
Q 003167 71 ---GWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-SRTGLM 146 (843)
Q Consensus 71 ---~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~-~~~~~~ 146 (843)
+|++|++|++|++||+...+.|++.+++.|++|+..+.++.+ +.|+++++++|++.++|+|++.+. +.++..
T Consensus 160 ~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~ 235 (419)
T 3h5l_A 160 FSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQAL 235 (419)
T ss_dssp CCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHH
T ss_pred ccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHH
Confidence 899999999999999999999999999999999999988877 689999999999999999999876 578899
Q ss_pred HHHHHHHcCCcccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEe-CCCchhhHHHHHHHhhhcCCCCCCCcchh
Q 003167 147 VFDVAQRLGMMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH-TPDSKRRRDFVSRWNTLSNGSIGLNPYGL 225 (843)
Q Consensus 147 i~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 225 (843)
+++++++.|+ ...|+.++++... +.. ....+..+|++....+ .++.+..++|.++|+++|+.. +.+.+++
T Consensus 236 ~~~~~~~~g~---~~~~~~~~~~~~~-~~~----~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~-p~~~~a~ 306 (419)
T 3h5l_A 236 FMNQFMTDPT---NSLVYLQYGASLA-AFR----DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGDL-SSTASGC 306 (419)
T ss_dssp HHHHHTTSCC---SCEEEECSGGGSH-HHH----HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCTT-SCHHHHH
T ss_pred HHHHHHHcCC---CceEEecCCCCcH-HHH----HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCCC-CCcchhH
Confidence 9999999997 3467777655432 110 2234567888766543 346688999999999999732 2235899
Q ss_pred hHhhHHHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCcc--
Q 003167 226 YAYDTVWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLL-- 303 (843)
Q Consensus 226 ~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~-- 303 (843)
.+|||++++++|++++++.... +...++++|+++|++++|+|++|.++||++|+..
T Consensus 307 ~~Yda~~~~~~a~~~a~~~~~~----------------------g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~ 364 (419)
T 3h5l_A 307 QTYSALYAYSIAAALAGGPGAP----------------------YDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWS 364 (419)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCT----------------------TCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCE
T ss_pred HHHHHHHHHHHHHHHhcCCccC----------------------CCccCHHHHHHHHHhCCcccCceEEEECCCCCcccc
Confidence 9999999999999987542110 1112489999999999999999999999999832
Q ss_pred ----------CCcEEEEEeeecCceeeeeee
Q 003167 304 ----------HPSYDIINVIEHGYPQQIGYW 324 (843)
Q Consensus 304 ----------~~~~~I~~~~~~~~~~~VG~w 324 (843)
...+.|+||+++.. +.+-.|
T Consensus 365 ~~~~~~~~~~~~~~~i~q~q~g~~-~~~~V~ 394 (419)
T 3h5l_A 365 YPTETNDPSLGMPHIFSQIFDKAE-DGVLIA 394 (419)
T ss_dssp ETTTCSCTTSSEECEEEECCCTTS-CCEEEE
T ss_pred ccCccCCccccCCceEEEeeCCce-eeEEEC
Confidence 12345777765444 334455
No 23
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.97 E-value=5.1e-30 Score=282.44 Aligned_cols=273 Identities=12% Similarity=0.061 Sum_probs=233.9
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|++||||.+|..+.+++++++++++|+|+++++++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~ 151 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPD 151 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 78999999999999999999999999999999999999987 56899999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
++||+...+.+++.+++.|++|+....++.+ ..|+.+.+.+|++.++|+|++.+...++..++++++++|+..+.+
T Consensus 152 ~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 227 (379)
T 3n0w_A 152 AAYGDLMNAAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ 227 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC
T ss_pred cchhHHHHHHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999998888876 678999999999999999999999899999999999999876543
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCCC-chhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTPD-SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALKL 240 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~~ 240 (843)
++.+.++... +.. ....+..+|++...++.++ .|..++|.++|+++|+ ..++.+++.+|||++++++|+++
T Consensus 228 -~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~~~~~Yda~~~~~~Al~~ 299 (379)
T 3n0w_A 228 -KVGGMIDILT-DVK----SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--KMPTNNQAGGYSAALQYLKAVNA 299 (379)
T ss_dssp -EEECCBCCHH-HHH----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -EEEecccchH-HHH----hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHHHHHH
Confidence 4444432211 110 1123567898877765543 5889999999999997 45678999999999999999999
Q ss_pred HhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCccee-eEeccCCCccCCcEEEEEeeecCc
Q 003167 241 FLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGP-IHFNQDRSLLHPSYDIINVIEHGY 317 (843)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~fd~~G~~~~~~~~I~~~~~~~~ 317 (843)
+++. ++++|.++|++++|.|+.|. +.||++|++ ...+.|+++++++.
T Consensus 300 ag~~-----------------------------~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~~ 347 (379)
T 3n0w_A 300 IGSK-----------------------------DPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPED 347 (379)
T ss_dssp HTCC-----------------------------CHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGGG
T ss_pred hCCC-----------------------------CHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchhh
Confidence 7321 48999999999999999986 999999985 57889999976543
No 24
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.97 E-value=2.2e-29 Score=273.81 Aligned_cols=276 Identities=12% Similarity=0.169 Sum_probs=231.2
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHH-HHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMV-SYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll-~~~~w~~v~ii~~ 80 (843)
+++|++||||.+|..+.++++++++.++|+|+++++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.
T Consensus 67 ~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~ 146 (346)
T 1usg_A 67 NDGIKYVIGHLCSSSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHD 146 (346)
T ss_dssp HTTCCEEECCSSHHHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEEC
T ss_pred hCCCCEEEcCCCcHHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 368999999999999999999999999999999888888876558999999999999999999998 5579999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+++||+...+.+++.+++.|++++....++.+ ..|+...++++++.++|+|++.+...++..+++++++.|+..
T Consensus 147 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~-- 220 (346)
T 1usg_A 147 KQQYGEGLARSVQDGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT-- 220 (346)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC--
T ss_pred CCchHHHHHHHHHHHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCC--
Confidence 99999999999999999999999887777655 567788999999999999999998888999999999999864
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeC-CCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHT-PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.|+.++++... ... ....+..+|++...++. ++.|..++|.++|+++++ ..++.+++.+|||++++++|++
T Consensus 221 -~~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~yda~~~~~~al~ 292 (346)
T 1usg_A 221 -QFMGPEGVGNA-SLS----NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--DPSGPYVWITYAAVQSLATALE 292 (346)
T ss_dssp -EEEECGGGCCT-THH----HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred -eEEecCCCCcH-HHH----HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHHHHHHH
Confidence 37877655321 110 12335678888876543 356788999999999886 3567789999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEee-ecCce
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVI-EHGYP 318 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~-~~~~~ 318 (843)
+++.. ++++|+++|++.+|+|++|+++||++|++....|.|++++ ++.+
T Consensus 293 ~~g~~-----------------------------~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~- 342 (346)
T 1usg_A 293 RTGSD-----------------------------EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSS- 342 (346)
T ss_dssp HHCCC-----------------------------CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCE-
T ss_pred HhCCC-----------------------------CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEE-
Confidence 97321 3889999999999999999999999999777889999997 4443
Q ss_pred eee
Q 003167 319 QQI 321 (843)
Q Consensus 319 ~~V 321 (843)
+.|
T Consensus 343 ~~~ 345 (346)
T 1usg_A 343 TKA 345 (346)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 25
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.97 E-value=4.1e-29 Score=274.85 Aligned_cols=281 Identities=10% Similarity=0.109 Sum_probs=240.6
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|++||||.+|..+.+++++++++++|+|+++++++.+++ ..+|++||+.|++..++.++++++.++||++|++|+.|
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 160 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWK 160 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CCceEEEcCCccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecC
Confidence 58999999999999999999999999999999999988887 45899999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
+++|+...+.+++++++.|++++....++.+ ..|+...++++++.++|+|++.++...+..+++++++.|+..
T Consensus 161 ~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~v--- 233 (375)
T 4evq_A 161 YAAGEEMVSGFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGI--- 233 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCC---
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---
Confidence 9999999999999999999999888877766 678889999999999999999899999999999999999863
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC--CchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.|+.++ +.. .... .......+|++...++.+ +.|..++|.++|+++|+ ..++.+++.+|||++++++|++
T Consensus 234 p~~~~~-~~~-~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~p~~~~~~~yda~~~~~~al~ 305 (375)
T 4evq_A 234 PLWGPG-FLT-DGVE----AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--IPPDVFAVQGWDAGQLLDAGVK 305 (375)
T ss_dssp CEEEEG-GGT-TTTH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecC-cCC-HHHH----HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--CCCcHHHHHHHHHHHHHHHHHH
Confidence 355554 321 1111 233467889988877654 45889999999999987 4567899999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecCcee
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ 319 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~~~~ 319 (843)
+++.. ..++++|.++|++++|+|++|+++||++|++ ...+.|++++++++ +
T Consensus 306 ~~g~~---------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~-~ 356 (375)
T 4evq_A 306 AVGGD---------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKS-V 356 (375)
T ss_dssp HTTTC---------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEE-E
T ss_pred HhCCC---------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCc-E
Confidence 96321 1148999999999999999999999999985 57899999987666 9
Q ss_pred eeeeecCC
Q 003167 320 QIGYWSNY 327 (843)
Q Consensus 320 ~VG~w~~~ 327 (843)
.||.+...
T Consensus 357 ~v~~~~~~ 364 (375)
T 4evq_A 357 NLGLAAPA 364 (375)
T ss_dssp EEEEEECS
T ss_pred Eeeehhhc
Confidence 99988543
No 26
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.97 E-value=3.6e-29 Score=273.50 Aligned_cols=280 Identities=14% Similarity=0.120 Sum_probs=236.5
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|++||||.+|..+.++++++.+.++|+|++.++++.+++.. ||+||+.|++..++.++++++...||++|++|+.|
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVT 148 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 57899999999999999999999999999999999888887655 99999999999999999999888899999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
+++|+...+.+++++++.|++++....++.+ ..|+...++++++.++|+|++.++..++..+++++++.|+..
T Consensus 149 ~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~--- 221 (358)
T 3hut_A 149 TDWGLSSAQAFRKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSAL--- 221 (358)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCC---
T ss_pred cHHHHHHHHHHHHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCC---
Confidence 9999999999999999999999988777766 678889999999999999999999989999999999999854
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC--CchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.|+.++++... ... .......+|++...++.+ ..|..++|.++|+++|+. .++.+++.+|||++++++|++
T Consensus 222 p~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--~p~~~~~~~yda~~~~~~al~ 294 (358)
T 3hut_A 222 PVYGSSALYSP-KFI----DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA--IPTLFAAHGYDAVGIMLAAVG 294 (358)
T ss_dssp CEEECGGGCSH-HHH----HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEecCcccCH-HHH----HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHH
Confidence 47776654322 110 123356889888877655 468899999999999873 678899999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHH-HHHHHHhc-ccCCcceeeEeccCCCccCCcEEEEEeeecCc
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKK-FLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 317 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~~ 317 (843)
+++.. ++.+ |.++|+++ +|+|++|+++||++|++....+.|++++++.+
T Consensus 295 ~ag~~-----------------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~ 345 (358)
T 3hut_A 295 RAGPE-----------------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDF 345 (358)
T ss_dssp HHCTT-----------------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEE
T ss_pred HhCCC-----------------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEE
Confidence 97322 3677 99999999 89999999999999996578899999985444
Q ss_pred eeeeeeecC
Q 003167 318 PQQIGYWSN 326 (843)
Q Consensus 318 ~~~VG~w~~ 326 (843)
+.+....+
T Consensus 346 -~~~~~~~~ 353 (358)
T 3hut_A 346 -RVIDREGH 353 (358)
T ss_dssp -EEC-----
T ss_pred -EEeccccc
Confidence 76665543
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.96 E-value=3.3e-29 Score=274.87 Aligned_cols=283 Identities=17% Similarity=0.164 Sum_probs=236.9
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|.+||||.+|..+.++++++++++||+|+++++++.+++. +||+||+.|++..++.++++++.++||++|++|+.|
T Consensus 70 ~~~v~~iiG~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 148 (368)
T 4eyg_A 70 NDKVNVIAGFGITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSD 148 (368)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred cCCcEEEECCCccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3789999999999999999999999999999999888888765 799999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
+++|+...+.+++.+++.|++++....++.+ ..|+...+++|++.++|+|++.+...++..+++++++.|+...+.
T Consensus 149 ~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v 224 (368)
T 4eyg_A 149 YAPGNDALAFFKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGI 224 (368)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTC
T ss_pred chHhHHHHHHHHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCc
Confidence 9999999999999999999999988888776 678999999999999999999888889999999999999876557
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC--CchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.|+.++++...... .......+|++...++.+ +.|..++|.++| ++|+. ..++.+++.+|||++++++|++
T Consensus 225 ~~~~~~~~~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-~~p~~~~~~~yda~~~~~~al~ 297 (368)
T 4eyg_A 225 KVIGPGDVMDDDLL-----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-QRPGFMAVGGYDGIHLVFEALK 297 (368)
T ss_dssp EEEEETTTTCHHHH-----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCcccCHHHH-----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-CCCChHHHHHHHHHHHHHHHHH
Confidence 78887743322111 112245788887776654 468899999999 88832 3678899999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEec-cCCCccCCcEEEEEee-ecCc
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFN-QDRSLLHPSYDIINVI-EHGY 317 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd-~~G~~~~~~~~I~~~~-~~~~ 317 (843)
+++.. . ++++|.++|++++|+|++|+++|| ++|+ ....+.|++++ .+|.
T Consensus 298 ~~g~~---------------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~-~~~~~~i~~~~~~~G~ 348 (368)
T 4eyg_A 298 KTGGK---------------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRD-IVQNIYIRKVEKVDGE 348 (368)
T ss_dssp HTTTC---------------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCC-EEEEEEEEEEEEETTE
T ss_pred HhCCC---------------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCC-cccceEEEEEEecCCe
Confidence 96311 1 489999999999999999999999 6776 56788899987 2343
Q ss_pred eee--eeeec
Q 003167 318 PQQ--IGYWS 325 (843)
Q Consensus 318 ~~~--VG~w~ 325 (843)
++. +|.+.
T Consensus 349 ~~~v~~~~~~ 358 (368)
T 4eyg_A 349 LYNIEFAKFD 358 (368)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEeeccc
Confidence 344 44543
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.96 E-value=4.6e-28 Score=267.93 Aligned_cols=286 Identities=15% Similarity=0.189 Sum_probs=231.9
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH-cCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~-~~w~~v~ii~~ 80 (843)
+++|.+||| .+|..+.++++++++.+||+|+++++++ ++ .+||+||+.|++..++.++++++.+ +||++|++|+.
T Consensus 74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 149 (391)
T 3eaf_A 74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYD 149 (391)
T ss_dssp TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 578999999 6899999999999999999999876654 44 6799999999999999999999877 69999999999
Q ss_pred -cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH--HhcCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 81 -DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 81 -d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
|++||+...+.+++++++.|++++....++.+ ..|+...+.+ |++.++|+|++.++..++..++++++++|+.
T Consensus 150 ~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~ 225 (391)
T 3eaf_A 150 SKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLD 225 (391)
T ss_dssp TTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCC
T ss_pred cCChhHHHHHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999988888776 7799999999 9999999999999999999999999999985
Q ss_pred ccceEEEEeCcccccccCCCCCChhhhhhccc-cEEEEEeC-----CCchhhHHHHHHHhhhcC-CCCCCCcchhhHhhH
Q 003167 158 DSGYVWIATTWLSTFIDSKSPLSLKTAKSILG-ALTLRQHT-----PDSKRRRDFVSRWNTLSN-GSIGLNPYGLYAYDT 230 (843)
Q Consensus 158 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~YDA 230 (843)
. .++.+++.... ... ....+..+| ++...++. ++.|. .+|.++|+++|+ ..+..+.+++.+|||
T Consensus 226 ~---~~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p~~~~~~~~~yda 296 (391)
T 3eaf_A 226 A---FLLTNVWGFDE-RSP----QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSEDQINLRVVQGFVN 296 (391)
T ss_dssp C---EEEECGGGCST-THH----HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred c---eEEEeccCCCH-HHH----HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCcccccHHHHHHHH
Confidence 4 45555433211 110 123456889 77766554 34455 679999999997 333345789999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccC--Ccce-eeEeccCCCccCCcE
Q 003167 231 VWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMT--GLSG-PIHFNQDRSLLHPSY 307 (843)
Q Consensus 231 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~--G~tG-~v~fd~~G~~~~~~~ 307 (843)
++++++|++++...+.. .. +++.|.++|++.+|+ |++| +++||++|++....+
T Consensus 297 ~~~l~~Al~~a~~~g~~-----------------------~~-~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~ 352 (391)
T 3eaf_A 297 VWLLIKAIESVTSQDLQ-----------------------ER-GGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKV 352 (391)
T ss_dssp HHHHHHHHTTSCHHHHH-----------------------HH-THHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCE
T ss_pred HHHHHHHHHHHHhcCCC-----------------------CC-CHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEE
Confidence 99999999986211000 01 489999999998898 9999 999998776678899
Q ss_pred EEEEeeecCceeeeeeecCCC
Q 003167 308 DIINVIEHGYPQQIGYWSNYS 328 (843)
Q Consensus 308 ~I~~~~~~~~~~~VG~w~~~~ 328 (843)
.|+++..+|.++.|+.|....
T Consensus 353 ~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 353 FIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp EEEEECTTSSEEEEEEECCCT
T ss_pred EEEEEecCCEEEEeeeecCcc
Confidence 999994444449999997543
No 29
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.96 E-value=4.1e-28 Score=265.69 Aligned_cols=278 Identities=10% Similarity=0.104 Sum_probs=234.0
Q ss_pred CCeEEEEcCCChHHHHHHHH--hcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSH--LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~--~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
++|.+||||.+|..+.++++ ++++.+||+|++.++++.+++ +||+||+.|++..++.++++++.++||++|++|+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~ 149 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQ 149 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEe
Confidence 58999999999999999999 999999999999988887876 89999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+++||+...+.+++++++.|++++....++.+ ..|+...++++++.++|+|+++++..++..++++++++|+..
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~-- 223 (364)
T 3lop_A 150 EDALGKEAITGVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEA-- 223 (364)
T ss_dssp TTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCC--
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCC--
Confidence 99999999999999999999999887777766 678999999999999999999999999999999999999865
Q ss_pred eEEEEeCcccccccCCCCCChhhh-hhccccEEEEE----eCCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTA-KSILGALTLRQ----HTPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIA 235 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la 235 (843)
.|+..+++.... .. .... +..+|++.... +.+..|..++|.++|+++++....++.+++.+|||+++++
T Consensus 224 -~~i~~~~~~~~~-~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 224 -QLLGLSSIDPGI-LQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp -EEEECTTSCHHH-HH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHH
T ss_pred -eEEEeccCChHH-HH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 366665543221 10 1233 56788877653 2356789999999999998643367889999999999999
Q ss_pred HHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhc-ccCC-cceeeEeccCCCccCCcEEEEEee
Q 003167 236 RALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTG-LSGPIHFNQDRSLLHPSYDIINVI 313 (843)
Q Consensus 236 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G-~tG~v~fd~~G~~~~~~~~I~~~~ 313 (843)
+|+++++.. . +++.|.++|+++ +|+| ++|+++|+++++.......|.+++
T Consensus 298 ~al~~ag~~---------------------------~-~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~ 349 (364)
T 3lop_A 298 EAIRRAGPK---------------------------P-TREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVG 349 (364)
T ss_dssp HHHHHHCSS---------------------------C-CHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEEC
T ss_pred HHHHHhCCC---------------------------C-CHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEc
Confidence 999997311 1 489999999999 6999 999999998887666777888887
Q ss_pred ecCceeeee
Q 003167 314 EHGYPQQIG 322 (843)
Q Consensus 314 ~~~~~~~VG 322 (843)
++++...-|
T Consensus 350 ~~~~~~~~~ 358 (364)
T 3lop_A 350 PNGLVIQEG 358 (364)
T ss_dssp TTSCEEEC-
T ss_pred CCCcccccc
Confidence 766644444
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.96 E-value=1.4e-28 Score=270.21 Aligned_cols=270 Identities=14% Similarity=0.090 Sum_probs=218.8
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
+++|.+||||.+|+++.+++++++++++|+|++.++++.+++ ..+||+||+.|++..++.+++.++++++| +|++|+.
T Consensus 71 ~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~ 149 (374)
T 3n0x_A 71 DDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQ 149 (374)
T ss_dssp TSCCSEEEECSSHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEE
T ss_pred hCCceEEEcCCCcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeC
Confidence 368999999999999999999999999999998888888887 45899999999999999999988888898 8999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCC-----CeEEEEEcChhhHHHHHHHHHHcC
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-----ARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-----~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
|++||+...+.+++.+++.|++|+..+.++.+ ..|+++++++|++++ +|+|++....... .+.++.+++
T Consensus 150 ~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~ 223 (374)
T 3n0x_A 150 DYAFGRDGVAAFKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMD 223 (374)
T ss_dssp SSHHHHHHHHHHHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcc
Confidence 99999999999999999999999999888877 789999999999988 9999887433221 245566666
Q ss_pred CcccceEEEEeCcccccccCCCCCChhhhhhccccEEEEEe---CCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHH
Q 003167 156 MMDSGYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH---TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 232 (843)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~ 232 (843)
+...++.++..+...... .......|+.+...+ .++.|..++|.++|+++|+ ..++.+++.+|||++
T Consensus 224 ~~~~g~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--~~p~~~a~~~Yda~~ 293 (374)
T 3n0x_A 224 PKRYGIELSTGGNILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--APPDFFTAGGFSAAM 293 (374)
T ss_dssp GGGGTEEEEECCCCTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHH
T ss_pred hhhcCCeeeeccccchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--CCCChhHHHHHHHHH
Confidence 655555555433221110 112345666665543 3457889999999999997 467789999999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEe
Q 003167 233 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINV 312 (843)
Q Consensus 233 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~ 312 (843)
++++|++++++. ++++|.++|++++|+|++|+++||+++......+.|+++
T Consensus 294 ~l~~Al~~ag~~-----------------------------~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~ 344 (374)
T 3n0x_A 294 AVVTAVQKAKST-----------------------------DTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKV 344 (374)
T ss_dssp HHHHHHHHHTSC-----------------------------CHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEE
T ss_pred HHHHHHHHhCCC-----------------------------CHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEE
Confidence 999999997321 489999999999999999999999643346678999999
Q ss_pred eecCc
Q 003167 313 IEHGY 317 (843)
Q Consensus 313 ~~~~~ 317 (843)
+.++.
T Consensus 345 ~~~~~ 349 (374)
T 3n0x_A 345 KVDPA 349 (374)
T ss_dssp ECCTT
T ss_pred EeCCC
Confidence 86543
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.96 E-value=2.5e-28 Score=270.27 Aligned_cols=289 Identities=10% Similarity=0.036 Sum_probs=237.0
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHH-cCCcEEEEEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSY-FGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~-~~w~~v~ii~~ 80 (843)
++|.+||| .+|..+.++++++++.+||+|+++++++ +.+ ..+||+||+.|++..++.++++++.. +||++|++|+.
T Consensus 74 ~~V~~iig-~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~ 151 (392)
T 3lkb_A 74 FKIPVFLS-YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVH 151 (392)
T ss_dssp TCCSCEEE-CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCcEEEEe-CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 58999999 6899999999999999999999766544 444 56899999999999999999998876 69999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
|++||+...+.+++++++.|++++....++.+ ..|+.+.+.++++.++|+|++++...++..++++++++|+..
T Consensus 152 ~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~-- 225 (392)
T 3lkb_A 152 PSPFGRAPVEDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM-- 225 (392)
T ss_dssp SSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC--
T ss_pred CCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc--
Confidence 99999999999999999999999988888766 678999999999999999999999999999999999999854
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEeCC--CchhhHHHHHHHhhhcCCCCCC--CcchhhHhhHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHTP--DSKRRRDFVSRWNTLSNGSIGL--NPYGLYAYDTVWMIAR 236 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~YDAv~~la~ 236 (843)
.|+.++++... ... .......+|++...++.+ ..+..++|.++|+++|+..+.. +.+++.+|||++++++
T Consensus 226 -~~~~~~~~~~~-~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~~~~~~~~~~~yda~~~~~~ 299 (392)
T 3lkb_A 226 -RHLGAHYTGGP-DLI----ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPENFIESVNYTNGMLAAAIAVE 299 (392)
T ss_dssp -EEEECGGGCSH-HHH----HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHHHHTCHHHHHHHHHHHHHHH
T ss_pred -eEEEecCcccH-HHH----HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHH
Confidence 56666544321 110 123456889888876643 2466889999999998732211 2337899999999999
Q ss_pred HHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcc----cC-------CcceeeEeccCCCccCC
Q 003167 237 ALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTN----MT-------GLSGPIHFNQDRSLLHP 305 (843)
Q Consensus 237 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-------G~tG~v~fd~~G~~~~~ 305 (843)
|++++...++. . ++++|.++|++++ |+ |++|+++||++|++...
T Consensus 300 al~~ag~~~~~------------------------~-~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~ 354 (392)
T 3lkb_A 300 AIRRAQERFKR------------------------I-TNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAE 354 (392)
T ss_dssp HHHHHHHHHSS------------------------C-CHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEEC
T ss_pred HHHHhhccCCC------------------------C-CHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcc
Confidence 99998652111 1 4899999999997 98 99999999998887678
Q ss_pred cEEEEEeeecCceeeeeeecCCCCCc
Q 003167 306 SYDIINVIEHGYPQQIGYWSNYSGLS 331 (843)
Q Consensus 306 ~~~I~~~~~~~~~~~VG~w~~~~gl~ 331 (843)
.+.|++++++.+ +.||.|....++.
T Consensus 355 ~~~i~~~~~g~~-~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 355 GLRILEAKGGRF-VPVTEPFTSALFR 379 (392)
T ss_dssp CBEEEEEETTEE-EECSCCBCCHHHH
T ss_pred cEEEEEEeCCEE-EEeccccchhHHH
Confidence 899999976666 9999998765543
No 32
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.95 E-value=2e-27 Score=262.46 Aligned_cols=283 Identities=14% Similarity=0.197 Sum_probs=230.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCC--CCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLS--PLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls--~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
++|++||||.+|..+.++++++++.+||+|+++++++.++ ...+||+||+.|++..++.++++++.++||++|++|+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~ 167 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGF 167 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCceEEECCCCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4899999999999999999999999999999999888777 35689999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
|++||+...+.+++.+++.|++++..+.++.+ ..|+...++++++.++|+|++.++..++..+++++++.|+..
T Consensus 168 ~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~-- 241 (386)
T 3sg0_A 168 SDAYGEGYYKVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKG-- 241 (386)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCS--
T ss_pred CchHHHHHHHHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCC--
Confidence 99999999999999999999999877777766 678999999999999999999999888999999999999864
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEEe------CC-C---chhhHHHHHHHhhhcCCCCCCCcchhhHhhH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH------TP-D---SKRRRDFVSRWNTLSNGSIGLNPYGLYAYDT 230 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDA 230 (843)
.++..+++... ... .......+|++....+ .+ . .+..++|.++|+++|+. ..++.++..+|||
T Consensus 242 -~~~~~~~~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda 314 (386)
T 3sg0_A 242 -AIYQTHGVATE-EFI----KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-AAPTIFGVHLWDS 314 (386)
T ss_dssp -EEECCGGGCSH-HHH----HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-CCCCHHHHHHHHH
T ss_pred -cEEeccccCCH-HHH----HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-CCCChhHHHHHHH
Confidence 35655544321 110 1234567888776532 12 2 24689999999999863 2467899999999
Q ss_pred HHHHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhc-ccCCcceeeEeccCCCc--cCCcE
Q 003167 231 VWMIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSY 307 (843)
Q Consensus 231 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~G~~--~~~~~ 307 (843)
++++++|++++.+.... +...+++.|.++|+++ +|+|++|+++|+++++. ....+
T Consensus 315 ~~~~~~al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~ 372 (386)
T 3sg0_A 315 MTLVENAIPAALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSA 372 (386)
T ss_dssp HHHHHHHHHHHHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGC
T ss_pred HHHHHHHHHHhhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCce
Confidence 99999999998654210 0012478999999999 89999999999876443 34568
Q ss_pred EEEEeeecCceeee
Q 003167 308 DIINVIEHGYPQQI 321 (843)
Q Consensus 308 ~I~~~~~~~~~~~V 321 (843)
.|++++++.+ +.+
T Consensus 373 ~i~~~~~G~~-~~~ 385 (386)
T 3sg0_A 373 FLIEIRDGAF-RLK 385 (386)
T ss_dssp EEEEEETTEE-EEC
T ss_pred EEEEEECCEE-Eec
Confidence 9999976554 543
No 33
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.95 E-value=8.9e-27 Score=254.81 Aligned_cols=280 Identities=16% Similarity=0.149 Sum_probs=228.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|.+||||.+|..+.++.+++.+.++|+|++.++ + +....+|++||+.|++..++.++++++.++||++|++|+.++
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~ 145 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSD 145 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 48999999999999999999999999999998877 4 344567999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccceE
Q 003167 83 DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYV 162 (843)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~ 162 (843)
+||+...+.+++++++.|++++....++.+ ..|+...+.++++.++|+|++++....+..+++++++.|+.. .
T Consensus 146 ~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---p 218 (362)
T 3snr_A 146 SYGDLWFNDLKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNG---L 218 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCS---E
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---c
Confidence 999999999999999999999888777766 678889999999999999999998999999999999999865 3
Q ss_pred EEEeCcccccccCCCCCChhhhhhccccEEEEEe----------CCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHH
Q 003167 163 WIATTWLSTFIDSKSPLSLKTAKSILGALTLRQH----------TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVW 232 (843)
Q Consensus 163 ~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~ 232 (843)
++...++... ... .......+|++....+ .+..+..++|.++|+++|+. ..++.+++.+|||++
T Consensus 219 ~i~~~g~~~~-~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~p~~~~~~~yda~~ 292 (362)
T 3snr_A 219 IYQTHGAASM-DFI----RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-SSRSQFAGHSYDAFK 292 (362)
T ss_dssp EEECGGGCSH-HHH----HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-TCCCHHHHHHHHHHH
T ss_pred EEeccCcCcH-HHH----HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-CCCCchhHhHHHHHH
Confidence 4655544322 110 1234567888876532 12346789999999999863 256889999999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhc-ccCCcceeeEeccCCCc--cCCcEEE
Q 003167 233 MIARALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSL--LHPSYDI 309 (843)
Q Consensus 233 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~G~~--~~~~~~I 309 (843)
++++|++++.+.... +...+++.|+++|+++ +|+|++|+++|+++++. ....+.|
T Consensus 293 ~~~~al~~a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i 350 (362)
T 3snr_A 293 VLERVVPVALKKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRIL 350 (362)
T ss_dssp HHHHHHHHHHHHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEE
T ss_pred HHHHHHHHhhccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEE
Confidence 999999998654210 0012478999999999 89999999999887432 3467899
Q ss_pred EEeeecCceee
Q 003167 310 INVIEHGYPQQ 320 (843)
Q Consensus 310 ~~~~~~~~~~~ 320 (843)
++++++.+ +.
T Consensus 351 ~~~~~G~~-~~ 360 (362)
T 3snr_A 351 LTVKNGKY-VI 360 (362)
T ss_dssp EEEETTEE-EE
T ss_pred EEEECCEE-EE
Confidence 99976554 44
No 34
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.95 E-value=6.9e-27 Score=254.77 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=217.3
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc-CCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-GWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~-~w~~v~ii~~ 80 (843)
+++|++|+||.+|..+.+++++++++++|+|+++++++.+++ ..+|+||+.|++..++.+++.++... +++++++++.
T Consensus 73 ~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (353)
T 4gnr_A 73 QSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTD 151 (353)
T ss_dssp TSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEE
T ss_pred hCCceEEeccccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEc
Confidence 468999999999999999999999999999999999999875 45899999999999999999998765 4455555555
Q ss_pred c-CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 81 D-DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 81 d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
+ ++||++..+.+.+ +.|++++..+.++.+ +.|+++++.+|+++++|+|++.+...++..++++++++|+..
T Consensus 152 ~~~~yg~~~~~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~- 223 (353)
T 4gnr_A 152 NASDYAKGIAKSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDK- 223 (353)
T ss_dssp TTCHHHHHHHHHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCS-
T ss_pred CchHHHHHHHHHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCC-
Confidence 4 4588777766654 458899999999887 789999999999999999999999999999999999999854
Q ss_pred ceEEEEeCcccccccCCCCCChhhhhhccccEEEEEeC---CCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHH
Q 003167 160 GYVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHT---PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIAR 236 (843)
Q Consensus 160 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~ 236 (843)
.++.++++...... .....+..+|.+....+. +.++..++|.++|+++|+ ..++.+++.+|||++++++
T Consensus 224 --~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--~~p~~~a~~~Yda~~~la~ 295 (353)
T 4gnr_A 224 --PIVGGDGFNGEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--EEPSTFAALAYDSVHLVAN 295 (353)
T ss_dssp --CEEECGGGCSHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHH
T ss_pred --cEEEecccccchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHHHH
Confidence 35555544322100 011234566777665443 345788999999999997 4577899999999999999
Q ss_pred HHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhc-ccCCcceeeEeccCCCccCCcEEEEEeeec
Q 003167 237 ALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQT-NMTGLSGPIHFNQDRSLLHPSYDIINVIEH 315 (843)
Q Consensus 237 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~ 315 (843)
|++++. +++++.++|+++ +|+|++|+++||++|+. ...+.|++++++
T Consensus 296 Ai~~a~-------------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~G 343 (353)
T 4gnr_A 296 AAKGAK-------------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNG 343 (353)
T ss_dssp HHTTCS-------------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETT
T ss_pred HHhcCC-------------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECC
Confidence 997531 378899999988 59999999999999985 466778888755
Q ss_pred Cceeeeee
Q 003167 316 GYPQQIGY 323 (843)
Q Consensus 316 ~~~~~VG~ 323 (843)
.+ +.+..
T Consensus 344 k~-~~~~~ 350 (353)
T 4gnr_A 344 KV-EAAEV 350 (353)
T ss_dssp EE-EEEEE
T ss_pred EE-EEEEE
Confidence 44 55543
No 35
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.95 E-value=9.2e-28 Score=256.69 Aligned_cols=272 Identities=23% Similarity=0.408 Sum_probs=196.4
Q ss_pred CCCCeeEEEecCcccccccEEeec------CcceEEeEeHHHHHHHHHHCCCcccEEEEeC---CCCCC-CCChHHHHHH
Q 003167 372 NNGRQLRIGVPNRVSYRDFVFKVN------GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPY---GDGHK-NPTYSELINQ 441 (843)
Q Consensus 372 ~~g~~lrv~v~~~~~~~p~~~~~~------~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~---~~~~~-n~~~~~~i~~ 441 (843)
..+++||||+.. ++||.+.+. +++++.|+++||++++++++|++++++.++. |.... +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 346789999985 377877651 3688999999999999999998876665542 22222 5789999999
Q ss_pred HHcCcccEEEeceeeecCcceeeeecccccccceEEEEeccC-CCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcc
Q 003167 442 ITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHR 520 (843)
Q Consensus 442 l~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~-~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~ 520 (843)
|.+|++|+++++++++++|.+.++||.||+..+.+++++++. ...++|.|+.||+..
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~---------------------- 144 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV---------------------- 144 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC----------------------
Confidence 999999999999999999999999999999999999999876 567899999999910
Q ss_pred cCCCCCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhh
Q 003167 521 LNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT 600 (843)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~ 600 (843)
|+ |++++..+|++++||..
T Consensus 145 -------------------------------p~------------------------------tv~~~~~~i~~~~dL~g 163 (312)
T 1yae_A 145 -------------------------------PR------------------------------GSERMESPIDSADDLAK 163 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred -------------------------------Cc------------------------------ccccccCCCCCHHHHhh
Confidence 10 45566678999999973
Q ss_pred C-CCeEEEEeCchHHHHHHHhhCCC-----------CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEE
Q 003167 601 S-NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSV 668 (843)
Q Consensus 601 ~-~~~i~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~ 668 (843)
. +.+||+..++....++.+. +.. ..+++.+++.++++++|.+|+ ||++.+...+.|++++.|++.+
T Consensus 164 ~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~l~~ 241 (312)
T 1yae_A 164 QTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQ 241 (312)
T ss_dssp CSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTTEEE
T ss_pred ccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCCEEE
Confidence 2 2279977666666666431 111 124566889999999999999 9999999999999988899999
Q ss_pred eCCccccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcccCCCCCCCCCCCCCCccc
Q 003167 669 RGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSSESSQSDSEQLQI 732 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~~~~~~~~~~L~l 732 (843)
++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... +...+++
T Consensus 242 ~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 242 IGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK-EASALGV 304 (312)
T ss_dssp ESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC--------------
T ss_pred ecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc-cchhhhh
Confidence 99888888999999999999999999999999999999999999998899876544 3444444
No 36
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.95 E-value=5e-26 Score=251.05 Aligned_cols=283 Identities=12% Similarity=0.036 Sum_probs=226.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|++|||+.+|..+.++.+++.+.++|+|++++++. ...+|++||+.+++..++.++++++...+|++|++|+.+
T Consensus 73 ~~~v~~iig~~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~ 149 (385)
T 1pea_A 73 NRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSD 149 (385)
T ss_dssp TTCCCEEEECCSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEES
T ss_pred hCCcEEEECCCchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCC
Confidence 36899999999999899999999999999999866421 124689999999999999999999999999999999998
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccce
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSGY 161 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~ 161 (843)
+++|+...+.+++++++.|++++....++.. .+..|+...+++|++.++|+|++.+....+..++++++++|+.....
T Consensus 150 ~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~ 227 (385)
T 1pea_A 150 YIYPRESNHVMRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRP 227 (385)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCC
T ss_pred ChHHHHHHHHHHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCc
Confidence 8899999999999999999999876666542 23789999999999889999999888888999999999999864434
Q ss_pred EEEEeCcccccccCCCCCChhhhhhccccEEEEEeC--CCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHHHH
Q 003167 162 VWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQHT--PDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARALK 239 (843)
Q Consensus 162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~Al~ 239 (843)
.++..++....+.. ...+..+|++...++. .+.|..++|.++|+++|+....++.+++.+|||++++++|++
T Consensus 228 ~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~ 301 (385)
T 1pea_A 228 PIASLTTSEAEVAK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQ 301 (385)
T ss_dssp CEEESSCCHHHHTT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEecccchHHHHh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 44544322111111 1124578888877654 356889999999999987444567889999999999999999
Q ss_pred HHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecCcee
Q 003167 240 LFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGYPQ 319 (843)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~~~~ 319 (843)
+++.. ++++|.++|++++|+|++|+++||++++.....+.|.++..+|.++
T Consensus 302 ~ag~~-----------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~ 352 (385)
T 1pea_A 302 AAGNW-----------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQ 352 (385)
T ss_dssp HHTSC-----------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEE
T ss_pred HhCCC-----------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEE
Confidence 97321 3899999999999999999999998554456778899884334336
Q ss_pred eeeee
Q 003167 320 QIGYW 324 (843)
Q Consensus 320 ~VG~w 324 (843)
.|...
T Consensus 353 ~v~~~ 357 (385)
T 1pea_A 353 VRWQS 357 (385)
T ss_dssp EEEEC
T ss_pred EeecC
Confidence 66544
No 37
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.93 E-value=9.6e-26 Score=234.19 Aligned_cols=235 Identities=23% Similarity=0.408 Sum_probs=196.0
Q ss_pred CCCeeEEEecCcccccccEEeecC------cceEEeEeHHHHHHHHHHCCCcccEEEEeCCC-CC---CCCChHHHHHHH
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGD-GH---KNPTYSELINQI 442 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~-~~---~n~~~~~~i~~l 442 (843)
.+++|||++.. ++||.+.+.. ++++.||++||++++++++|++++++.++.+. |. .+++|++++.+|
T Consensus 2 ~~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 36789999985 4677776643 58999999999999999999887777765321 21 156899999999
Q ss_pred HcCcccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccC
Q 003167 443 TTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLN 522 (843)
Q Consensus 443 ~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~ 522 (843)
.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhC-
Q 003167 523 DEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS- 601 (843)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~- 601 (843)
+|++++||...
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~g~~ 131 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLAKQT 131 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHHTCS
T ss_pred --------------------------------------------------------------------cccCHHHhccCC
Confidence 68899999732
Q ss_pred CCeEEEEeCchHHHHHHHhhCCC-----------CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC
Q 003167 602 NDRVGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 670 (843)
Q Consensus 602 ~~~i~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 670 (843)
+..+|+..++....++.+ .+.. ...++.+++.++++++|.+|+ ||++.+...+.|+.++.|++.+++
T Consensus 132 ~~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~ 209 (259)
T 3g3k_A 132 KIEYGAVEDGATMTFFKR-SKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIG 209 (259)
T ss_dssp SSEEEEETTSHHHHHHHH-CCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEES
T ss_pred CceEEEecCcHHHHHHhh-ccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEec
Confidence 223888888777777743 1111 113456789999999999999 999999999999998899999999
Q ss_pred CccccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcccCCCC
Q 003167 671 QEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 719 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~ 719 (843)
..+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|+
T Consensus 210 ~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp SCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred ccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 9998899999999999999999999999999999999999999977786
No 38
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.93 E-value=2.4e-26 Score=242.92 Aligned_cols=236 Identities=20% Similarity=0.393 Sum_probs=190.3
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCC-CCC-------CCCChHHHHHHHHcCc
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH-------KNPTYSELINQITTGV 446 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~-~~~-------~n~~~~~~i~~l~~g~ 446 (843)
+.|+||+.. .|+||.+.+. ++++.|||+||++++++++|++++++.++.+ .|. .+++|++++++|.+|+
T Consensus 41 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~ 117 (292)
T 1pb7_A 41 KVICTGPND--TSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQ 117 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTS
T ss_pred ceeecccCC--CCCCcccccc-ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCC
Confidence 678888875 6788877664 7899999999999999999988666665432 122 1258999999999999
Q ss_pred ccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 003167 447 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFR 526 (843)
Q Consensus 447 ~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~ 526 (843)
+|+++++++++++|.+.++||.||+..+.+++++++.
T Consensus 118 ~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~------------------------------------------- 154 (292)
T 1pb7_A 118 ADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT------------------------------------------- 154 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-------------------------------------------
T ss_pred cCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-------------------------------------------
Confidence 9999999999999999999999999999999998765
Q ss_pred CCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCC---
Q 003167 527 GPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSND--- 603 (843)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~--- 603 (843)
++++++||...+.
T Consensus 155 ----------------------------------------------------------------~i~~~~dl~~~g~~~~ 170 (292)
T 1pb7_A 155 ----------------------------------------------------------------RITGINDPRLRNPSDK 170 (292)
T ss_dssp ----------------------------------------------------------------CCCSTTCHHHHSCBTT
T ss_pred ----------------------------------------------------------------CCCCCcCccccCcccc
Confidence 4566777753332
Q ss_pred e-EEEEeCchHHHHHHHhhCC----CCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcc
Q 003167 604 R-VGYQVGSFAENYLIEELSI----PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW 678 (843)
Q Consensus 604 ~-i~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 678 (843)
. +|+..++....++.+.... ...+++.+++.++++++|.+|++||++.+...+.|+++++|++.+++..+...++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (292)
T 1pb7_A 171 FIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 250 (292)
T ss_dssp BCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECSSCSEEEEE
T ss_pred eEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCCEEEcCccccCCce
Confidence 3 5777888777777432110 1123456789999999999999999999999999999999999999988888999
Q ss_pred eeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcccCCCCC
Q 003167 679 GFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACSS 720 (843)
Q Consensus 679 ~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~ 720 (843)
+++++|++||++.||++|.++.++|.+++|.+||+...+|..
T Consensus 251 ~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 251 GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp CCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCCC
Confidence 999999999999999999999999999999999999888863
No 39
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=3.6e-26 Score=240.64 Aligned_cols=241 Identities=20% Similarity=0.384 Sum_probs=189.9
Q ss_pred cCCCCeeEEEecCcccccccEEeec---CcceEEeEeHHHHHHHHHHCCCcccEEEEeCC-CCC-CCCChHHHHHHHHcC
Q 003167 371 PNNGRQLRIGVPNRVSYRDFVFKVN---GTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH-KNPTYSELINQITTG 445 (843)
Q Consensus 371 ~~~g~~lrv~v~~~~~~~p~~~~~~---~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~-~~~-~n~~~~~~i~~l~~g 445 (843)
|.+|++|||||+..++|++|....+ +.+++.|+++|+++++++++|+++++...+.+ .|. .+++|++++.+|.+|
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g 104 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQ 104 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTT
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcC
Confidence 5689999999998877777743221 13478999999999999999987665554322 121 357899999999999
Q ss_pred cccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003167 446 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 525 (843)
Q Consensus 446 ~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (843)
++|+++++++++++|.+.++||.||+.++.+++++++.
T Consensus 105 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 142 (284)
T 2a5s_A 105 RAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT------------------------------------------ 142 (284)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC------------------------------------------
T ss_pred CcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc------------------------------------------
Confidence 99999999999999999999999999999999998765
Q ss_pred CCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhh-----
Q 003167 526 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT----- 600 (843)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~----- 600 (843)
++++++||..
T Consensus 143 -----------------------------------------------------------------~~~~~~dl~~~~~~~ 157 (284)
T 2a5s_A 143 -----------------------------------------------------------------QVTGLSDKKFQRPHD 157 (284)
T ss_dssp -----------------------------------------------------------------CCCSTTSHHHHSGGG
T ss_pred -----------------------------------------------------------------ccccccccccCChhH
Confidence 2333333331
Q ss_pred --CCCeEEEEeCchHHHHHHHhhCCCCcceEeC--CCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC--CCeEEeC--Cc
Q 003167 601 --SNDRVGYQVGSFAENYLIEELSIPKSRLVAL--GSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRG--QE 672 (843)
Q Consensus 601 --~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~--~~ 672 (843)
.+.+||+..++.....+.+.+.....+++.+ ++.++++++|.+|++||++.+...+.|++++. |++.+++ ..
T Consensus 158 l~~~~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~ 237 (284)
T 2a5s_A 158 YSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI 237 (284)
T ss_dssp SSSCCCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG
T ss_pred cCCCceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc
Confidence 2678997765544555543221000134455 78999999999999999999999999998874 7888874 56
Q ss_pred cccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcccCCCC
Q 003167 673 FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLRKKACS 719 (843)
Q Consensus 673 ~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~ 719 (843)
+...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|.
T Consensus 238 ~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 238 FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp GGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred cccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 7778999999999999999999999999999999999999973 675
No 40
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.92 E-value=1.1e-24 Score=223.67 Aligned_cols=220 Identities=22% Similarity=0.307 Sum_probs=190.8
Q ss_pred CeeEEEecCcccccccEEee--cCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 375 RQLRIGVPNRVSYRDFVFKV--NGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~--~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
++|+||+.. +|+||.+.. ++++++.||++||++++++++|++++++. ..|++++.+|.+|++|++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~---------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKLEILS---------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEECC--CCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCceEEec---------ccHHHHHHHHHcCCCCcccc
Confidence 479999975 899998753 45789999999999999999997755544 44999999999999999999
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
++++|++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~------------------------------------------------ 112 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKADV------------------------------------------------ 112 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCccccccccccc------------------------------------------------
Confidence 99999999999999999999999999987661
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
..+++++||. |++||+..|+.
T Consensus 113 ---------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 113 ---------------------------------------------------------EKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp ---------------------------------------------------------TTCCSHHHHH--TSEEEEETTSH
T ss_pred ---------------------------------------------------------ccccccccCC--CCEEEecCCcH
Confidence 4788999995 89999999999
Q ss_pred HHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEe---CCccccCcceeeecCCCC-c
Q 003167 613 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR---GQEFTKSGWGFAFPRDSP-L 688 (843)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~k~sp-l 688 (843)
...++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.++..+... .......+++++++|++| |
T Consensus 134 ~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L 211 (243)
T 4h5g_A 134 PESMVKEQL--PKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDL 211 (243)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHH
T ss_pred HHHHHHHhc--ccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHH
Confidence 888886543 4568899999999999999999999999999988888776654432 234455678999999998 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 689 AIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 689 ~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
++.||++|.+|.++|.+++|.+||+.
T Consensus 212 ~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 212 KEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999999999999999999999987
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.91 E-value=7.9e-25 Score=231.61 Aligned_cols=215 Identities=25% Similarity=0.463 Sum_probs=179.5
Q ss_pred eEEeEeHHHHHHHHHHCCCcccEEEEeCC-CCC-CCCChHHHHHHHHcCcccEEEeceeeecCcceeeeecccccccceE
Q 003167 399 IVHGYCIDVFLAAVRLLPYAVPYKFIPYG-DGH-KNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLV 476 (843)
Q Consensus 399 ~~~G~~~dl~~~i~~~l~f~~~~~~~~~~-~~~-~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~ 476 (843)
++.||++||++++++++|++++++.++.+ .|. .+++|++++++|.+|++|+++++++++.+|.+.++||.||+..+.+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 58999999999999999977655544322 111 3578999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcccccccccc
Q 003167 477 VVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTL 556 (843)
Q Consensus 477 ~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~ 556 (843)
++++++.
T Consensus 147 i~~~~~~------------------------------------------------------------------------- 153 (294)
T 2rc8_A 147 ILVRTRG------------------------------------------------------------------------- 153 (294)
T ss_dssp EEEETTS-------------------------------------------------------------------------
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 9998776
Q ss_pred hhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhh----hCCCeEEEEeCchHHHHHHHhhCCCC--cceEe
Q 003167 557 GRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLM----TSNDRVGYQVGSFAENYLIEELSIPK--SRLVA 630 (843)
Q Consensus 557 ~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~----~~~~~i~~~~~~~~~~~l~~~~~~~~--~~~~~ 630 (843)
.++++++||. ..+.++|+..|+....++.+.+.... .+.+.
T Consensus 154 ---------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~ 200 (294)
T 2rc8_A 154 ---------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN 200 (294)
T ss_dssp ---------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGC
T ss_pred ---------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhc
Confidence 3677888886 23788999999998888865421000 11234
Q ss_pred CCCHHHHHHHHhc--CCcEEEEcChhhHHHHHhc--CCCeEEeCCccccCcceeeecCCCCchHHHHHHHHhhhccccHH
Q 003167 631 LGSPEEYAIALEN--RTVAAVVDERPYIDLFLSD--HCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQ 706 (843)
Q Consensus 631 ~~~~~~~~~~l~~--g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~ 706 (843)
+++.++++++|.+ |++||++.+...+.|++++ .|++.+++..+...+++++++|++||++.||++|.++.++|.++
T Consensus 201 ~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~ 280 (294)
T 2rc8_A 201 VPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMD 280 (294)
T ss_dssp BSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhCCCHH
Confidence 6899999999999 9999999999999999876 47899999888888999999999999999999999999999999
Q ss_pred HHHHhhcccCCCC
Q 003167 707 RIHDKWLRKKACS 719 (843)
Q Consensus 707 ~~~~kw~~~~~c~ 719 (843)
+|.+||+....|.
T Consensus 281 ~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 281 VLHDKWYKVVPCG 293 (294)
T ss_dssp HHHHHHCCC----
T ss_pred HHHHhhcCCCCCC
Confidence 9999999988885
No 42
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=1.8e-24 Score=222.17 Aligned_cols=223 Identities=16% Similarity=0.221 Sum_probs=186.1
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHC-CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEE
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 451 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l-~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 451 (843)
..++|+||+.. .|+||.+.+. ++++.||++||+++++++| |++++++. .+|++++.+|.+|++|+++
T Consensus 7 ~~~tl~vg~~~--~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTGT--QFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFKFKT---------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEEEEE---------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHCCCCCEec
Confidence 45789999975 8999999875 7899999999999999998 86655544 4499999999999999999
Q ss_pred eceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 452 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 452 ~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
+++++|++|.+.++||.||+.....+++.++.
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------ 106 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------------ 106 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETT------------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEecc------------------------------------------------
Confidence 99999999999999999977765555444333
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 611 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~ 611 (843)
...+++++||. |++||+..|+
T Consensus 107 ---------------------------------------------------------~~~~~~~~dL~--g~~v~v~~gs 127 (243)
T 4gvo_A 107 ---------------------------------------------------------NNSINSTKDLA--GKRVITSATS 127 (243)
T ss_dssp ---------------------------------------------------------CCSCSSGGGGT--TCEEEECTTC
T ss_pred ---------------------------------------------------------ccccCchHHhc--CCeEEEecCc
Confidence 15789999994 8999999998
Q ss_pred hHHHHHHHh---hCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC-CCeEEeCCccccCcceeeecCCCC
Q 003167 612 FAENYLIEE---LSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH-CQFSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 612 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~sp 687 (843)
....++.+. .+........+.+.++++++|.+|++||++.+...+.|+.++. .++.++++.+...+++++++|++|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 207 (243)
T 4gvo_A 128 NGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDET 207 (243)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCH
T ss_pred hHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCH
Confidence 776666432 2222223345678899999999999999999999998887774 468888888888899999999998
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
|++.||++|.+|.++|.+++|.+|||+
T Consensus 208 ~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 208 KLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 999999999999999999999999997
No 43
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.91 E-value=1.8e-23 Score=213.88 Aligned_cols=218 Identities=17% Similarity=0.305 Sum_probs=194.1
Q ss_pred CeeEEEecCcccccccEEe-ecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 375 RQLRIGVPNRVSYRDFVFK-VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~-~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
++|+||+.. .++||.+. + .++.+.|+++|+++.+++++|++++++..+ |.+++.++.+|++|+++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSG-NNSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEES--EETTTEECCC-TTSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEECC--CCCCeEEEeC-CCCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEc
Confidence 679999985 79999998 5 378899999999999999999876666554 9999999999999999988
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
++.+.+|.+.++||.||+..+.++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 613 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~ 613 (843)
++++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 489999995 899999999987
Q ss_pred HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--------CeEEeCCcc-ccCcceeeecC
Q 003167 614 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--------QFSVRGQEF-TKSGWGFAFPR 684 (843)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--------~l~~~~~~~-~~~~~~~~~~k 684 (843)
..++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.+++..+ ...+++++++|
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k 199 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANP 199 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECG
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcC
Confidence 77775543 34678889999999999999999999999999999998855 788888877 78899999999
Q ss_pred CCC-chHHHHHHHHhhhccccHHHHHHhhccc
Q 003167 685 DSP-LAIDMSTAILTLSENGELQRIHDKWLRK 715 (843)
Q Consensus 685 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~ 715 (843)
++| +.+.||++|.++.++|.+++|.+||+..
T Consensus 200 ~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 200 DQFVLIKKINKILLEMEADGTYLRLYSEYFEG 231 (237)
T ss_dssp GGHHHHHHHHHHHHHHHHSSHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCc
Confidence 977 9999999999999999999999999983
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.90 E-value=2.1e-23 Score=217.19 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=184.2
Q ss_pred CCCeeEEEecCcccccccEEeecC----cceEEeEeHHHHHHHHHHCCCcccEEEEe---CCCCCCCCChHHHHHHHHcC
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNG----TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNPTYSELINQITTG 445 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~----~~~~~G~~~dl~~~i~~~l~f~~~~~~~~---~~~~~~n~~~~~~i~~l~~g 445 (843)
+|++|||++.. ++||.+.+.+ .+++.|+++||++++++++|++++++..+ +|....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 47899999985 3788877641 17899999999999999999876665543 22222357899999999999
Q ss_pred cccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003167 446 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 525 (843)
Q Consensus 446 ~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (843)
++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998755
Q ss_pred CCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhC-CCe
Q 003167 526 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDR 604 (843)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~~ 604 (843)
++++++||.+. +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 58899999611 112
Q ss_pred EEEEeCchHHHHHHHhhCCCC------------------cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhc--CC
Q 003167 605 VGYQVGSFAENYLIEELSIPK------------------SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HC 664 (843)
Q Consensus 605 i~~~~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~ 664 (843)
.|...++....++.+. +... .+++.+++.++++++|.+|++ +++.+...+.|++++ .|
T Consensus 131 ~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~ 208 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDC 208 (265)
T ss_dssp EECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTC
T ss_pred EEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCc
Confidence 3334444555566432 2211 123567899999999999999 888888888888765 46
Q ss_pred CeEEeCCccccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcc-cCCCC
Q 003167 665 QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 719 (843)
Q Consensus 665 ~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~ 719 (843)
++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+. ...|.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 209 SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 79999888888899999999999999999999999999999999999998 66774
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.90 E-value=3.1e-23 Score=215.70 Aligned_cols=232 Identities=19% Similarity=0.389 Sum_probs=189.3
Q ss_pred CCeeEEEecCcccccccEEeecC------cceEEeEeHHHHHHHHHHCCCcccEEEEe---CCCCCCCC-ChHHHHHHHH
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNG------TDIVHGYCIDVFLAAVRLLPYAVPYKFIP---YGDGHKNP-TYSELINQIT 443 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~i~~~l~f~~~~~~~~---~~~~~~n~-~~~~~i~~l~ 443 (843)
+++|+|++. +++||.+.+.+ ++++.|+++||++++++++|++++++..+ +|....++ +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 578999997 47888887642 48899999999999999999876666552 23323333 7999999999
Q ss_pred cCcccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCC
Q 003167 444 TGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLND 523 (843)
Q Consensus 444 ~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~ 523 (843)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998755
Q ss_pred CCCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCC
Q 003167 524 EFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSND 603 (843)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~ 603 (843)
++++++||. |+
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 588999996 55
Q ss_pred e---EEEEeCchHHHHHHHhhCCC-----------CcceEeCCCHHHHHHHH--hcCCcEEEEcChhhHHHHHhcC-CCe
Q 003167 604 R---VGYQVGSFAENYLIEELSIP-----------KSRLVALGSPEEYAIAL--ENRTVAAVVDERPYIDLFLSDH-CQF 666 (843)
Q Consensus 604 ~---i~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~a~~~~~~~~~~~~~~~-~~l 666 (843)
+ +|+..++....++.+. +.. ..+++.+++.++++++| .+|+ |+++.+...+.|+.++. |++
T Consensus 131 ~~~~ig~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~~ 208 (263)
T 1mqi_A 131 TEIAYGTLDSGSTKEFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCDT 208 (263)
T ss_dssp SSSEEECBSSSHHHHHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCCE
T ss_pred cCeeEEEEeccHHHHHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCce
Confidence 5 5644433334444331 111 12466788999999999 8899 89999999998888774 678
Q ss_pred EEeCCccccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcc-cCCCC
Q 003167 667 SVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR-KKACS 719 (843)
Q Consensus 667 ~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~-~~~c~ 719 (843)
.+++..+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ...|+
T Consensus 209 ~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 209 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp EEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred EEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 888888888889999999999999999999999999999999999998 77786
No 46
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.90 E-value=6.9e-23 Score=211.19 Aligned_cols=221 Identities=23% Similarity=0.466 Sum_probs=196.2
Q ss_pred CCCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEE
Q 003167 372 NNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 451 (843)
Q Consensus 372 ~~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 451 (843)
...++|+|++.. .|+||.+.. ++.+.|+++|+++.+++++|++++++..+ |.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTDT--SFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEES--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeCC--CCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEE
Confidence 356789999984 789998874 68999999999999999999887666654 99999999999999999
Q ss_pred eceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 452 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 452 ~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
+++..+.+|.+.++||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998766
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 611 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~ 611 (843)
+.+++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 4689999995 8899999999
Q ss_pred hHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCccccCcceeeecCCCCch
Q 003167 612 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLA 689 (843)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~ 689 (843)
....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.+++..+...+++++++|++|+.
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~ 217 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLV 217 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHH
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHH
Confidence 9888886544 45678889999999999999999999999999999988854 5888888888889999999999999
Q ss_pred HHHHHHHHhhhccccHHHHHHhhccc
Q 003167 690 IDMSTAILTLSENGELQRIHDKWLRK 715 (843)
Q Consensus 690 ~~in~~i~~l~e~G~~~~~~~kw~~~ 715 (843)
+.||++|.++.++|.+++|.+||++.
T Consensus 218 ~~l~~~l~~l~~~g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 218 AKVNAELARMKADGRYAKIYKKWFGS 243 (249)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999983
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.90 E-value=2.7e-23 Score=211.76 Aligned_cols=220 Identities=21% Similarity=0.361 Sum_probs=188.5
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++||||+.. .|+||.+.+. ++.+.|+++|+++++++++|++++++.. +|.+++.++.+|++|+++++
T Consensus 4 a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTEG--AYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVKN---------DWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCCCEEEeC
Confidence 5789999984 7899999874 7899999999999999999977655543 49999999999999999988
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
++.+.+|.+.++||.||+..+.++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999886533
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 613 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~ 613 (843)
++||. | +||+..|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 35663 7 9999999999
Q ss_pred HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC-CCeEEeCC-ccccCcceeeecCCCC-chH
Q 003167 614 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH-CQFSVRGQ-EFTKSGWGFAFPRDSP-LAI 690 (843)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~-~~l~~~~~-~~~~~~~~~~~~k~sp-l~~ 690 (843)
..++.+. ..+++.+++.++++++|.+|++|+++.+...+.+++++. .++.+++. .+...+++++++|++| +.+
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 193 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRG 193 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHH
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHH
Confidence 9988653 467888999999999999999999999999999998876 67777765 4566789999999988 999
Q ss_pred HHHHHHHhhhccccHHHHHHhhcccCCCCCCCC
Q 003167 691 DMSTAILTLSENGELQRIHDKWLRKKACSSESS 723 (843)
Q Consensus 691 ~in~~i~~l~e~G~~~~~~~kw~~~~~c~~~~~ 723 (843)
.||++|.++.++|.+++|.+||++...|.....
T Consensus 194 ~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~~ 226 (232)
T 3i6v_A 194 KFDAAITSMKEDGTLNTMIKKWFGEDAAVYEEG 226 (232)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHCTTSCCC---
T ss_pred HHHHHHHHHHHCChHHHHHHHHcCCCCCccccc
Confidence 999999999999999999999999666555443
No 48
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.90 E-value=6.6e-23 Score=210.73 Aligned_cols=222 Identities=17% Similarity=0.276 Sum_probs=197.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .++||.+.+. ++.+.|+++|+++++++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLEP--GYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKLVPT---------SWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEECT--TSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEECC--CcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEEEEc---------cHHHHHHHHhCCCcCEEEec
Confidence 4689999984 7899998874 7899999999999999999977555543 49999999999999999888
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
+..+.+|.+.++||.||+..+.++++++...
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 102 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------- 102 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTT-------------------------------------------------
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcc-------------------------------------------------
Confidence 9999999999999999999999999988751
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 613 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~ 613 (843)
.++++++||...|++||+..|+..
T Consensus 103 --------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 103 --------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVSA 126 (245)
T ss_dssp --------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSHH
T ss_pred --------------------------------------------------------cccCCHHHhccCCcEEEEeCCcHH
Confidence 478999999766899999999999
Q ss_pred HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC--CCeEEeCCccccCcceeeecCCCC-chH
Q 003167 614 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LAI 690 (843)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~~ 690 (843)
..++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++.+. ..+..+...+...+++++++|++| +.+
T Consensus 127 ~~~l~~~~--~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~ 204 (245)
T 3k4u_A 127 EYAAKRLF--KNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLN 204 (245)
T ss_dssp HHHHHHHC--SSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHH
T ss_pred HHHHHhhC--CcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHH
Confidence 88886543 4567888999999999999999999999999999887764 468888888888899999999999 999
Q ss_pred HHHHHHHhhhccccHHHHHHhhcc
Q 003167 691 DMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 691 ~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
.||++|.++.++|.+++|.+||+.
T Consensus 205 ~ln~~l~~l~~~g~~~~i~~k~~~ 228 (245)
T 3k4u_A 205 WLNHFLAQIKHDGSYDELYERWFV 228 (245)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999999999999999999998
No 49
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.89 E-value=9.9e-23 Score=208.90 Aligned_cols=222 Identities=19% Similarity=0.309 Sum_probs=195.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .++||.+.+. ++.+.|+++|+++.+++++|++++++ + .+|.+++.+|.+|++|+++++
T Consensus 10 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~--~-------~~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTNA--TYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTLDVR--E-------FSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEE--E-------CCGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeCC--CCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCceEEE--E-------cCHHHHHHHHhCCCcCEEEec
Confidence 4689999964 7899998864 78999999999999999999765554 4 349999999999999999988
Q ss_pred eeeecCcceeeeeccccc--ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 454 IAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
+..+.+|.+.++| .||+ ..+.++++++..
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~------------------------------------------------ 108 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE------------------------------------------------ 108 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC------------------------------------------------
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC------------------------------------------------
Confidence 9999999999999 9999 888899887664
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 611 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~ 611 (843)
++++++||. |++||+..|+
T Consensus 109 -----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~ 127 (242)
T 3del_B 109 -----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGT 127 (242)
T ss_dssp -----------------------------------------------------------CSCCCCGGG--SSCEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEEcCc
Confidence 688899995 8899999999
Q ss_pred hHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCc----ceeeecCCCC
Q 003167 612 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDSP 687 (843)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~sp 687 (843)
....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++++...+.+++..+.... ++++++|++|
T Consensus 128 ~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 204 (242)
T 3del_B 128 YQEAYLQS---LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRP 204 (242)
T ss_dssp HHHHHHHH---STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETTCH
T ss_pred HHHHHHHh---CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCCCH
Confidence 99888865 3556788899999999999999999999999999999988777888877777777 9999999988
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhcccCCCCC
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWLRKKACSS 720 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~~~~~c~~ 720 (843)
+++.||++|.++.++|.+++|.+||+....|..
T Consensus 205 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 205 ALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 999999999999999999999999999555443
No 50
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.89 E-value=1.7e-22 Score=210.82 Aligned_cols=225 Identities=19% Similarity=0.361 Sum_probs=196.1
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
..++||||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.+|.+|++|++++
T Consensus 19 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 86 (268)
T 3hv1_A 19 KEKKIKIGFDA--TFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDVEWQAI---------DWDMKETELKNGTIDLIWN 86 (268)
T ss_dssp HHTEEEEEECT--EETTTEEECT-TSCEECHHHHHHHHHHHTTTCEEEEEEC---------CGGGHHHHHHHTSCSEECS
T ss_pred cCCcEEEEECC--CCCCceEECC-CCCEEEehHHHHHHHHHHhCCcEEEEEC---------CHHHHHHHHHCCCCCEEEe
Confidence 35789999985 7899999874 7899999999999999999977555443 4999999999999999998
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
++..+.+|.+.++||.||...+.++++++..
T Consensus 87 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------- 117 (268)
T 3hv1_A 87 GYSVTDERKQSADFTEPYMVNEQVLVTKKSS------------------------------------------------- 117 (268)
T ss_dssp SCBCCHHHHTTCEECCCCEEECEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcCcHHHeeCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999988655
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
++++++||. |++||+..|+.
T Consensus 118 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 137 (268)
T 3hv1_A 118 ----------------------------------------------------------GIDSVAGMA--GKTLGAQAGSS 137 (268)
T ss_dssp ----------------------------------------------------------CCCSSGGGT--TCCEEEETTCH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEeCCc
Confidence 688999994 89999999999
Q ss_pred HHHHHHHhhC-----CCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC---CCeEEeCCccccCcceeeecC
Q 003167 613 AENYLIEELS-----IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFAFPR 684 (843)
Q Consensus 613 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~k 684 (843)
...++.+... .+..+++.+++.++++++|.+|++|+++.+...+.+++++. +++.+++..+...+++++++|
T Consensus 138 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 217 (268)
T 3hv1_A 138 GYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARK 217 (268)
T ss_dssp HHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECT
T ss_pred hHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcC
Confidence 8888854321 22257888999999999999999999999999999988874 468888887888899999999
Q ss_pred CCC-chHHHHHHHHhhhccccHHHHHHhhcccCCC
Q 003167 685 DSP-LAIDMSTAILTLSENGELQRIHDKWLRKKAC 718 (843)
Q Consensus 685 ~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~~~c 718 (843)
++| +.+.||++|.++.++|.+++|.+||+....+
T Consensus 218 ~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (268)
T 3hv1_A 218 VDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVA 252 (268)
T ss_dssp TCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCC
Confidence 998 9999999999999999999999999984333
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.89 E-value=9e-23 Score=208.80 Aligned_cols=221 Identities=15% Similarity=0.246 Sum_probs=193.0
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .++||.+.+. ++.+.|+++|+++++++++|++++++.. +|.+++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATTG--DYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVPT---------SWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEEe---------CHHHHHHHHHCCCcCEEEeC
Confidence 4789999974 7899999874 7899999999999999999977555543 49999999999999999888
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
+..+.+|.+.++||.||+..+.++++++...
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------- 112 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSEE------------------------------------------------- 112 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGGG-------------------------------------------------
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCcc-------------------------------------------------
Confidence 9999999999999999999999999987651
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 613 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~ 613 (843)
.++++++||...|++||+..|+..
T Consensus 113 --------------------------------------------------------~~i~~~~dL~~~g~~v~~~~g~~~ 136 (239)
T 3kbr_A 113 --------------------------------------------------------ARFQTLEQIDQPGVTAIVNPGGTN 136 (239)
T ss_dssp --------------------------------------------------------GGGSSHHHHSSTTCEEEECTTSHH
T ss_pred --------------------------------------------------------cccCCHHHhcCCCcEEEEcCCCcH
Confidence 368999999766889999999999
Q ss_pred HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC--CccccCcceeeecCCCC-chH
Q 003167 614 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSP-LAI 690 (843)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp-l~~ 690 (843)
..++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++.+++.++. .++...+++++++| .+ +.+
T Consensus 137 ~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~~l~~ 213 (239)
T 3kbr_A 137 EKFARANL--KKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFKR 213 (239)
T ss_dssp HHHHHHHC--SSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS-CHHHHH
T ss_pred HHHHHHhC--CCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC-CHHHHH
Confidence 88886543 45688889999999999999999999999999999998877776664 44667789999999 66 999
Q ss_pred HHHHHHHhhhccccHHHHHHhhcc
Q 003167 691 DMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 691 ~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
.||++|.++.++|.+++|.+||++
T Consensus 214 ~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 214 YVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCcHHHHHHHHhc
Confidence 999999999999999999999986
No 52
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.88 E-value=4.4e-22 Score=201.65 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=186.6
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++||||+.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISN---------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEE---------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEcC--CCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEe---------CCHHHHHHHHhCCCCCEEEecC
Confidence 579999975 7899998764 789999999999999999997765554 3499999999999999998889
Q ss_pred eeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 534 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (843)
..+.+|...+.||.||...+.++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998776
Q ss_pred hhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 003167 535 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 614 (843)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~~ 614 (843)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 2347889994 8999999999998
Q ss_pred HHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCcccc-----CcceeeecCCCC
Q 003167 615 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTK-----SGWGFAFPRDSP 687 (843)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~-----~~~~~~~~k~sp 687 (843)
.++.+.... ..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.+++..+.. .+++++++|++|
T Consensus 122 ~~l~~~~~~-~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T 3tql_A 122 SYLQDSFGN-SITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQ 200 (227)
T ss_dssp HHHHHHHGG-GSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCH
T ss_pred HHHHHhccc-cceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCH
Confidence 888664421 1578889999999999999999999999999999888754 37776544433 355999999998
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhc
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWL 713 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~ 713 (843)
+.+.||++|.++.++|.++++.+||+
T Consensus 201 ~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 201 ALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 99999999999999999999999996
No 53
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.88 E-value=1.3e-22 Score=215.49 Aligned_cols=256 Identities=9% Similarity=0.033 Sum_probs=198.5
Q ss_pred CCCeEEEEcCCChHHHHHHHHhc-ccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLA-NELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~-~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
+++|.+||||.+|+.+.++++++ ...+||+|++++++ .+......|+||+.|. .++.++++++...|.+++++|+.
T Consensus 54 ~~~v~~IiGp~~s~~~~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~ 130 (325)
T 2h4a_A 54 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMP 130 (325)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HCCCCEEEeeCCHHHHHHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEc
Confidence 47999999999999999999999 78999999987654 3333344677776554 47899999998889999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+++||+...+.|++++++.|++|+..+.++.. .||..+|+++ ..++|+|++.++..++..+.++++..|. .
T Consensus 131 ~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~---~ 201 (325)
T 2h4a_A 131 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP---N 201 (325)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT---T
T ss_pred CCcHHHHHHHHHHHHHHHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC---C
Confidence 99999999999999999999999998888643 5999999999 4899999999999999888888877654 3
Q ss_pred eEEEEeCcccc-cccCCCCCChhhhhhccccEEEE-Ee--CCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHH
Q 003167 161 YVWIATTWLST-FIDSKSPLSLKTAKSILGALTLR-QH--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIAR 236 (843)
Q Consensus 161 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~ 236 (843)
-..+.++++.. .... .......++|++... ++ .++.+..++|.++|+..+ .+....+.+|||+.++++
T Consensus 202 ~pl~~~~~~~~~s~~~----~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~ 273 (325)
T 2h4a_A 202 LAIYASSRASASATNT----NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQ 273 (325)
T ss_dssp CEEEECGGGCCHHHHT----CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHT
T ss_pred CCEEEeccccccCCCC----CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHH
Confidence 35666666551 1111 134456789987765 33 345677888988887554 244567899999998655
Q ss_pred HHHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecC
Q 003167 237 ALKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHG 316 (843)
Q Consensus 237 Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~ 316 (843)
+ .++ +.+....|.|+||.++||++|+ +.....+.+++++.
T Consensus 274 l-~~l--------------------------------------~~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~ 313 (325)
T 2h4a_A 274 F-NEL--------------------------------------RQVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGA 313 (325)
T ss_dssp H-HHH--------------------------------------HHSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTE
T ss_pred H-HHH--------------------------------------hhCCCCeeccCceeEEECCCCe-EEEeechhhccCCe
Confidence 4 222 1123357999999999999998 67888888887665
Q ss_pred c
Q 003167 317 Y 317 (843)
Q Consensus 317 ~ 317 (843)
.
T Consensus 314 ~ 314 (325)
T 2h4a_A 314 I 314 (325)
T ss_dssp E
T ss_pred E
Confidence 5
No 54
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.88 E-value=4e-22 Score=214.24 Aligned_cols=261 Identities=9% Similarity=-0.004 Sum_probs=199.7
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcc-cCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~-~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
+++|.+||||.+|+.+.++++... ...+|+++.+++++ .. ..|++||+.+++..++.++++++...|++++++++.
T Consensus 56 ~~~v~~iiGp~~s~~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~ 132 (327)
T 3ckm_A 56 QAGIKTLVGPLLKQNLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMP 132 (327)
T ss_dssp HTTCCEEECCCSHHHHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HcCCeEEEEccccccchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEec
Confidence 478999999999999888777655 45566665444332 22 348999999999999999999999899999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 81 DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
|++||+...+.|++.+++.|++|+..+.++.. + ....+.+++..++|+|++.++..++..+.++++++|+..
T Consensus 133 ~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~----~--~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~-- 204 (327)
T 3ckm_A 133 QNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP----A--DVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL-- 204 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSSCCEEEEESST----T--HHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC--
T ss_pred CChHHHHHHHHHHHHHHHCCCeEEEEEECCCC----c--hhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC--
Confidence 99999999999999999999999998888655 3 345677889999999999999999999999999988643
Q ss_pred eEEEEeCcccccccCCCCCChhhhhhccccEEEEE-e--CCCchhhHHHHHHHhhhcCCCCCCCcchhhHhhHHHHHHHH
Q 003167 161 YVWIATTWLSTFIDSKSPLSLKTAKSILGALTLRQ-H--TPDSKRRRDFVSRWNTLSNGSIGLNPYGLYAYDTVWMIARA 237 (843)
Q Consensus 161 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~YDAv~~la~A 237 (843)
.++.++++........ ......++|++.... + .++.+..++|.++|++.++ ...+.+.+|||+.+++.+
T Consensus 205 -~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l 276 (327)
T 3ckm_A 205 -AIYASSRASASATNTN---TDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQF 276 (327)
T ss_dssp -EEEECGGGCCHHHHTC---HHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTH
T ss_pred -CEEeeeccccccchhc---chhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHH
Confidence 5666665443211111 222344667766543 2 4567889999999988764 223667899999877655
Q ss_pred HHHHhhcCCcccccCCCccCCCCCCcccCCCcccccchHHHHHHHHhcccCCcceeeEeccCCCccCCcEEEEEeeecCc
Q 003167 238 LKLFLDQGNTISFSNDTKLNGLGGGTLNLGALSIFDGGKKFLANILQTNMTGLSGPIHFNQDRSLLHPSYDIINVIEHGY 317 (843)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~fd~~G~~~~~~~~I~~~~~~~~ 317 (843)
.+.. .+...+|.|++|.++||++|+ ....+.+.+++++..
T Consensus 277 ~~~~---------------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~ 316 (327)
T 3ckm_A 277 NELR---------------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAI 316 (327)
T ss_dssp HHHH---------------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEE
T ss_pred HHhc---------------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEE
Confidence 4332 122346999999999999997 667888888876655
Q ss_pred eeeee
Q 003167 318 PQQIG 322 (843)
Q Consensus 318 ~~~VG 322 (843)
++|.
T Consensus 317 -vpv~ 320 (327)
T 3ckm_A 317 -VPVV 320 (327)
T ss_dssp -EECC
T ss_pred -EEcc
Confidence 7765
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.88 E-value=8.5e-22 Score=200.44 Aligned_cols=218 Identities=21% Similarity=0.355 Sum_probs=189.2
Q ss_pred CCeeEEEecCcccccccEEe--ecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEE
Q 003167 374 GRQLRIGVPNRVSYRDFVFK--VNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 451 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~--~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 451 (843)
.++|+||+. +++||.+. + .++.+.|+++|+++.+++++|++++++.. .+|.+++.++.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEG-KNAAFTGISLDVWRAVAESQKWNSEYVRQ--------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCCEEEEEC--------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecC-CCCCEEEEeHHHHHHHHHHcCCcEEEEEe--------CCHHHHHHHHHCCCcCEEE
Confidence 467999997 47888887 4 37899999999999999999977555543 2599999999999999999
Q ss_pred eceeeecCcc--eeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC
Q 003167 452 GDIAIVTNRT--KAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP 529 (843)
Q Consensus 452 ~~~~i~~~r~--~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (843)
+++..+.+|. ..++||.||+....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8888999998 99999999999999999987761
Q ss_pred cccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEe
Q 003167 530 RKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 609 (843)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~ 609 (843)
.++++++||. |++||+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2789999995 89999999
Q ss_pred CchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCccccCcceeeecCCCC
Q 003167 610 GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 610 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~sp 687 (843)
|+....++.+. ..+++.+++.++++++|.+|++|+++.+...+.+++++.. ++.+++..+...+++++++|++|
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSP 199 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCT
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCch
Confidence 99988888543 3567888999999999999999999999999999887754 68888877777889999999999
Q ss_pred chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 688 LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 688 l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.+.+|++|.++.++|.++++.+||+.
T Consensus 200 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 226 (233)
T 1ii5_A 200 LQKTINVEMLNLLYSRVIAEFTERWLG 226 (233)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 56
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.87 E-value=5.5e-22 Score=203.77 Aligned_cols=223 Identities=14% Similarity=0.203 Sum_probs=190.7
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCC-CcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLP-YAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~-f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
.++|+|++.. .|+||.+.. ++.+.|+++|+++.+++++| ++++++.. +|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNG--SPRPFIYEE--NGELTGYEIEVVRAIFKDSDKYDVKFEKT---------EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECC--CSTTTSEEE--TTEEESHHHHHHHHHHTTCSSEEEEEEEC---------CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCC--CcCCeEEcC--CCCCcccHHHHHHHHHHHcCCceEEEEeC---------CHHHHHHHHhCCCcCEEec
Confidence 4689999985 788998843 78999999999999999999 88666554 4999999999999999998
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
+++.+.+|.+.++||.||+..+.++++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998744
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
.++++++||. |++||+..|+.
T Consensus 105 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 125 (246)
T 4eq9_A 105 ---------------------------------------------------------SSIKSLDDIG--GKSTEVVQATT 125 (246)
T ss_dssp ---------------------------------------------------------CSCSSGGGCT--TCEEEECTTCH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcc
Confidence 4789999995 89999999998
Q ss_pred HHHHHHH---hhCCCCcceEe-CCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCccccCc-ceeeecCC
Q 003167 613 AENYLIE---ELSIPKSRLVA-LGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSG-WGFAFPRD 685 (843)
Q Consensus 613 ~~~~l~~---~~~~~~~~~~~-~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~-~~~~~~k~ 685 (843)
...++.+ .......++.. ..+.++++++|.+|++|+++.+...+.+++++.. ++.++.......+ ++++++|+
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (246)
T 4eq9_A 126 SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQG 205 (246)
T ss_dssp HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETT
T ss_pred HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCC
Confidence 8888865 33322233442 3589999999999999999999999999887743 6888877666665 89999999
Q ss_pred CC-chHHHHHHHHhhhccccHHHHHHhhcccCC
Q 003167 686 SP-LAIDMSTAILTLSENGELQRIHDKWLRKKA 717 (843)
Q Consensus 686 sp-l~~~in~~i~~l~e~G~~~~~~~kw~~~~~ 717 (843)
+| +.+.||++|.++.++|.+++|.+||++...
T Consensus 206 ~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~ 238 (246)
T 4eq9_A 206 QDELKSFVDKRIKELYKDGTLEKLSKQFFGDTY 238 (246)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCC
Confidence 98 999999999999999999999999998433
No 57
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.87 E-value=1.5e-21 Score=199.53 Aligned_cols=221 Identities=18% Similarity=0.305 Sum_probs=186.4
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .|+||.+.+. ++.+.|+++|+++++++++|++++++. .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTDT--TYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWVA---------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEECS--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEECC--CcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEEe---------CCHHHHHHHHhCCCCCEEEEC
Confidence 4689999954 7899988764 688999999999999999997755544 359999999999999999988
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
++.+.+|.+.++||.||+..+.++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 899999999999999999999999998766
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchH
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFA 613 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~ 613 (843)
+...+++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 1125899994 889999999998
Q ss_pred HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHH-HHhcC--CCeEEeCCcccc-----CcceeeecCC
Q 003167 614 ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDL-FLSDH--CQFSVRGQEFTK-----SGWGFAFPRD 685 (843)
Q Consensus 614 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~-~~~~~--~~l~~~~~~~~~-----~~~~~~~~k~ 685 (843)
..++.+.+.....+++.+++.++++++|.+|++|+++.+...+.+ ++.+. .++.+++..+.. .+++++++|+
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 202 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKD 202 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTT
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCC
Confidence 888865442233567888999999999999999999999888754 44442 357777765543 3689999999
Q ss_pred CC-chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 686 SP-LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 686 sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+| +.+.||++|.++.++|.+++|.+||+.
T Consensus 203 ~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~ 232 (239)
T 1lst_A 203 DTELKAAFDKALTELRQDGTYDKMAKKYFD 232 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHCccHHHHHHHHcC
Confidence 98 999999999999999999999999997
No 58
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.87 E-value=1.7e-21 Score=198.36 Aligned_cols=219 Identities=19% Similarity=0.319 Sum_probs=193.1
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
..++|+||+.. .++||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++ .
T Consensus 9 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGGDR--DYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEEET--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEecC--CCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-E
Confidence 45789999964 7899998864 7899999999999999999988777654 49999999999999996 5
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
++..+.+|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 6889999999999999999999999998776
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
+.+++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 3589999995 88999999999
Q ss_pred HHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC--CCeEEeCCccccCcceeeecCCCC-ch
Q 003167 613 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LA 689 (843)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~ 689 (843)
...++.+. + ...+++.+++.++++++|.+|++|+++.+...+.+++++. .++..+...+...+++++++|++| +.
T Consensus 128 ~~~~l~~~-~-~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 205 (234)
T 3h7m_A 128 MHEYLAER-G-YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELL 205 (234)
T ss_dssp HHHHHHTT-T-CGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHH
T ss_pred HHHHHHhc-C-CCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHH
Confidence 88888542 2 3467888999999999999999999999999999988774 468888877788889999999998 99
Q ss_pred HHHHHHHHhhhccccHHHHHHhhcc
Q 003167 690 IDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 690 ~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.||++|.++.++|.++++.+||++
T Consensus 206 ~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 206 ARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 9999999999999999999999997
No 59
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.87 E-value=2e-21 Score=202.56 Aligned_cols=219 Identities=19% Similarity=0.266 Sum_probs=190.8
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
+.++||||+.. +|+||.+.+. ++.+.|+++|+++++++++|++++++.. .+|.+++.++.+|++|+++
T Consensus 30 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAVLN--LFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEEET--EETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEeCC--CCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 35789999974 7899999874 7889999999999999999977655533 4599999999999999976
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
+++.+.+|.+.+.||.||...+.++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 6999999999999999999999999998876
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
..+++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 149 (267)
T 3mpk_A 129 ---------------------------------------------------------DAPVDADHLD--GRTVALVRNSA 149 (267)
T ss_dssp ---------------------------------------------------------TSCSSGGGCT--TCEEEEETTCT
T ss_pred ---------------------------------------------------------CCCCCHHHHC--CCEEEEeCCch
Confidence 4689999995 89999999999
Q ss_pred HHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhc--CCCeEEeCCcc-ccCcceeeecCCCC-c
Q 003167 613 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD--HCQFSVRGQEF-TKSGWGFAFPRDSP-L 688 (843)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~~~~~k~sp-l 688 (843)
...++.+.+ +..+++.+++.++++++|.+|++||++.+...+.+++++ ..++.+.+... ...+++++++|++| +
T Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 227 (267)
T 3mpk_A 150 AIPLLQRRY--PQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTEL 227 (267)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHH
T ss_pred hHHHHHHhC--CCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHH
Confidence 999886543 356788899999999999999999999999999998887 44677776533 36788999999998 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 689 AIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 689 ~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
.+.||++|.++.++| +++|.+||+.
T Consensus 228 ~~~ln~~l~~l~~~~-~~~i~~kw~~ 252 (267)
T 3mpk_A 228 MSILNKALYSISNDE-LASIISRWRG 252 (267)
T ss_dssp HHHHHHHHHTSCHHH-HHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHH-HHHHHHhhcc
Confidence 999999999999997 9999999998
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.86 E-value=3.1e-21 Score=195.20 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=190.5
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++|+||+.. +++||.+.+ ++++.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEES--SBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEECC--CCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 579999984 789998877 3799999999999999999977666654 399999999999999999888
Q ss_pred eeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 534 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (843)
..+.+|...++|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998766
Q ss_pred hhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 003167 535 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 614 (843)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~~ 614 (843)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 3588999995 8899999999988
Q ss_pred HHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC--CCeEEeCCccccCcceeeecCCCC-chHH
Q 003167 615 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH--CQFSVRGQEFTKSGWGFAFPRDSP-LAID 691 (843)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~k~sp-l~~~ 691 (843)
.++.+.. ...+++.+++.++++++|.+|++|+++.+...+.+++++. .++.+++..+....++++++|++| +.+.
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ 199 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDK 199 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHH
Confidence 8886542 3457788899999999999999999999999999988775 368887777777789999999986 9999
Q ss_pred HHHHHHhhhccccHHHHHHhhcc
Q 003167 692 MSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 692 in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+|++|.++.++|.++++.+||+.
T Consensus 200 ~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 200 VNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999987
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.86 E-value=6.8e-21 Score=193.26 Aligned_cols=218 Identities=22% Similarity=0.395 Sum_probs=188.0
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++.. +|.+++.++.+|++|++++
T Consensus 4 ~a~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 71 (229)
T 2y7i_A 4 SARTLHFGTSA--TYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTNQ---------SFDSLIPSLRFKKFDAVIA 71 (229)
T ss_dssp SCCEEEEEECC--CBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred cCCcEEEEeCC--CcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEEc---------CHHHHHHHHhCCCceEEEe
Confidence 35789999963 7899988764 6889999999999999999977555543 4999999999999999987
Q ss_pred ceeeecCcceeeeeccccccc-ceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 453 DIAIVTNRTKAVDFTQPYIES-GLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~-~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
++..+.+|.+.+.|+.||... ..++++++.
T Consensus 72 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 102 (229)
T 2y7i_A 72 GMDMTPKREQQVSFSQPYYEGLSAVVVTRKG------------------------------------------------- 102 (229)
T ss_dssp SCBCCHHHHTTSEECSCSBCCCCEEEEEETT-------------------------------------------------
T ss_pred cCccCHHHhcceeeccccccCCcEEEEEeCC-------------------------------------------------
Confidence 788999999999999999999 888887643
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 611 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~ 611 (843)
. +++++||. |++||+..|+
T Consensus 103 ----------------------------------------------------------~-~~~~~dL~--g~~v~~~~g~ 121 (229)
T 2y7i_A 103 ----------------------------------------------------------A-YHTFADLK--GKKVGLENGT 121 (229)
T ss_dssp ----------------------------------------------------------S-CCSTGGGT--TCEEEEETTS
T ss_pred ----------------------------------------------------------C-CCCHHHHC--CCEEEEecCC
Confidence 2 67889994 8899999999
Q ss_pred hHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccc-----cCcceeeecCCC
Q 003167 612 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT-----KSGWGFAFPRDS 686 (843)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~k~s 686 (843)
....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++..++.+++..+. ..+++++++|++
T Consensus 122 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
T 2y7i_A 122 THQRYLQDKQ--QAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDN 199 (229)
T ss_dssp HHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTEEECSCCBCCTTTSCCCBCCEECTTC
T ss_pred cHHHHHHHhC--CCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCeEEeccccccccccccceEEEEeCCC
Confidence 9888886543 345788889999999999999999999999999999888778888876553 247899999998
Q ss_pred C-chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 687 P-LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 687 p-l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
| +.+.||++|.++.++|.++++.+||++
T Consensus 200 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 200 DALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 8 999999999999999999999999985
No 62
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.86 E-value=3.9e-21 Score=199.30 Aligned_cols=222 Identities=19% Similarity=0.314 Sum_probs=191.1
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
..++|+|++.. .|+||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVSP--ASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLNITE---------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEECC--CBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEEE---------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEECC--CCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEEEEE---------cCHHHHHHHHhCCCCCEEEE
Confidence 45789999974 7899988874 789999999999999999997755544 35999999999999999998
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
+++.+.+|.+.++||.||+..+..++++++..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987661
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
.+|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 3789999995 88999999999
Q ss_pred HHHHHHHhh---CCCC-cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhc-CCCeEEeCCccccCcceeeecCCCC
Q 003167 613 AENYLIEEL---SIPK-SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD-HCQFSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 613 ~~~~l~~~~---~~~~-~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~k~sp 687 (843)
...++.+.+ +.+. .+++.+++.++++++|.+|++|+++.+...+.+++++ ..++..........+++++++|+++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 227 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSP 227 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCH
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChH
Confidence 888886543 2222 5788899999999999999999999999988887766 4466666666667789999999999
Q ss_pred chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 688 LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 688 l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.+.||++|.+ ..++.++++.++|..
T Consensus 228 l~~~ln~~l~~-~g~~~l~~~~~~~~~ 253 (259)
T 4dz1_A 228 VRDDFNLWLKE-QGPQKISGIVDSWMK 253 (259)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHh-CCCeehHHHHHHHHh
Confidence 99999999999 888999999999987
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.85 E-value=1.7e-21 Score=203.49 Aligned_cols=218 Identities=16% Similarity=0.273 Sum_probs=185.3
Q ss_pred CCCeeEEEecCcccccccEEeecCc---ceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccE
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGT---DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDA 449 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~---~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di 449 (843)
..++|+|++.. .|+||.+.+. + +.+.|+++|+++++++++|++++++.. +|.+++.++.+|++|+
T Consensus 19 ~~~~l~v~~~~--~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~ 86 (271)
T 2iee_A 19 DKGKIVVATSG--TLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDA 86 (271)
T ss_dssp HHTEEEEEECS--CBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSE
T ss_pred cCCeEEEEECC--CCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCE
Confidence 35689999974 7899998764 4 899999999999999999977655543 4999999999999999
Q ss_pred EEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC
Q 003167 450 AVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPP 529 (843)
Q Consensus 450 ~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 529 (843)
++++++.+.+|.+.++||.||+..+.++++++...
T Consensus 87 ~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~--------------------------------------------- 121 (271)
T 2iee_A 87 AANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL--------------------------------------------- 121 (271)
T ss_dssp ECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG---------------------------------------------
T ss_pred EEeCCcCChhhccceEEeecceeCCeEEEEECCCC---------------------------------------------
Confidence 99888899999999999999999999999987651
Q ss_pred cccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEe
Q 003167 530 RKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 609 (843)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~ 609 (843)
.++++++||. |++||+..
T Consensus 122 ------------------------------------------------------------~~i~~~~dL~--g~~i~v~~ 139 (271)
T 2iee_A 122 ------------------------------------------------------------SGIKTLKDLK--GKKAAGAA 139 (271)
T ss_dssp ------------------------------------------------------------GGCSSGGGGT--TCEEESCT
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCEEEEeC
Confidence 2688999994 89999999
Q ss_pred CchHHHHHHHhhCCCCcceEeCCCHHHH--HHHHhcCCcEEEEcChhhHHHHHh-cC--CCeEEe-CCccccCcceeeec
Q 003167 610 GSFAENYLIEELSIPKSRLVALGSPEEY--AIALENRTVAAVVDERPYIDLFLS-DH--CQFSVR-GQEFTKSGWGFAFP 683 (843)
Q Consensus 610 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~a~~~~~~~~~~~~~-~~--~~l~~~-~~~~~~~~~~~~~~ 683 (843)
|+....++. ..+. +++.+++.+++ +++|.+|++| ++.+...+.+++. +. .++.++ +..+...+++++++
T Consensus 140 g~~~~~~l~-~~~~---~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (271)
T 2iee_A 140 TTVYMEVAR-KYGA---KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMK 214 (271)
T ss_dssp TSHHHHHHH-HTTC---EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEE
T ss_pred CccHHHHHH-HcCC---ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEc
Confidence 999888884 4443 78888898888 9999999999 6666666555554 43 367777 66777788999999
Q ss_pred CCCC-chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 684 RDSP-LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 684 k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
|++| +...||++|.++.++|.+++|.+||+.
T Consensus 215 k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 215 KSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 9988 999999999999999999999999998
No 64
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.85 E-value=2.1e-20 Score=195.30 Aligned_cols=241 Identities=17% Similarity=0.303 Sum_probs=191.1
Q ss_pred ccceeeeCCCcccCCccc---cccCCCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCC
Q 003167 351 HLYSVVWPGGVTSKPRGW---VFPNNGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYG 427 (843)
Q Consensus 351 ~l~~i~Wpg~~~~~p~~~---~~~~~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~ 427 (843)
-+..+.|.++....+... ......++|+|++.. .|+||.+.+ ++.+.|+++|+++.+++++|++++++..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~--~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v~~~~~--- 87 (272)
T 2pvu_A 15 VPRGSHMGGGRSTETSSSSGGDGGATKKKVVVGTDA--AFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDYELKNI--- 87 (272)
T ss_dssp -----------------------CCCCCCEEEEECC--CBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEC---
T ss_pred ccccceecCCCCCccccCccccccccCCeEEEEECC--CCCCeEEec--CCeEEEEHHHHHHHHHHHhCCceEEEEC---
Confidence 345567766543211111 111345789999974 788998875 5899999999999999999977655443
Q ss_pred CCCCCCChHHHHHHHHcCcccEEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHH
Q 003167 428 DGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFF 507 (843)
Q Consensus 428 ~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~ 507 (843)
.|.+++.+|.+|++|++++++..+.+|.+.++|+.||.....++++++..
T Consensus 88 ------~~~~~~~~l~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------ 137 (272)
T 2pvu_A 88 ------GWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS------------------------ 137 (272)
T ss_dssp ------CHHHHHHHHHHTSSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTC------------------------
T ss_pred ------CHHHHHHHHhCCCCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCC------------------------
Confidence 39999999999999999887888999999999999999999999998766
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecc
Q 003167 508 LVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 587 (843)
Q Consensus 508 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (843)
T Consensus 138 -------------------------------------------------------------------------------- 137 (272)
T 2pvu_A 138 -------------------------------------------------------------------------------- 137 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--C
Q 003167 588 LSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--Q 665 (843)
Q Consensus 588 ~~~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~ 665 (843)
++++++||. |++||+..|+....++.+.++ ...+++.+++.++++++|.+|++|+++.+...+.+++++.. +
T Consensus 138 ---~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~ 211 (272)
T 2pvu_A 138 ---PVKNALDLK--GKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKK 211 (272)
T ss_dssp ---CCCSGGGGT--TSCEEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGC
T ss_pred ---CCCCHHHhC--CCeEEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCc
Confidence 588999995 889999999998888876655 45678888999999999999999999999999999887754 4
Q ss_pred eEEeCCcc--ccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 666 FSVRGQEF--TKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 666 l~~~~~~~--~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.+++... ...+++++++|+..+.+.||++|.++.++|.++++.+||+.
T Consensus 212 l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 262 (272)
T 2pvu_A 212 LQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFG 262 (272)
T ss_dssp EEEECCTTTSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred eEEeccccccCCceEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 88877653 56678999999944999999999999999999999999987
No 65
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.84 E-value=1.2e-20 Score=195.29 Aligned_cols=221 Identities=18% Similarity=0.209 Sum_probs=187.2
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCc-ccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYA-VPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~-~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
.++|+||+. +++||.+.+. ++.+.|+++|+++.+++++|++ +++... +|.+++.++.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 467999996 6889988764 6899999999999999999976 555543 4999999999999999987
Q ss_pred ceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 453 DIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
++..+.+|.+.++||.||+..+.++++++..+
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 78999999999999999999999999987661
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhC-CCeEEEEeCc
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTS-NDRVGYQVGS 611 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~-~~~i~~~~~~ 611 (843)
..+++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 268999999744 7899999999
Q ss_pred hHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCccc--cCcceeeecCCCC
Q 003167 612 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFT--KSGWGFAFPRDSP 687 (843)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~--~~~~~~~~~k~sp 687 (843)
....++. ..+.+..+++.+++.++++++|.+|++|+++.+...+.+++++.. .+..+.+... ..+++++++|+++
T Consensus 134 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 212 (257)
T 2q88_A 134 TEEKLAL-EAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDE 212 (257)
T ss_dssp HHHHHHH-HTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGH
T ss_pred ccHHHHH-hcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCH
Confidence 9888884 455566688899999999999999999999999999999887743 3555443211 2467889999977
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhc
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWL 713 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~ 713 (843)
+.+.||++|.++.++|.++++.+||.
T Consensus 213 ~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 213 ALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 99999999999999999999999993
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.84 E-value=3e-20 Score=193.40 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=192.1
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
..++|+|++.. .++||.+.+. ++.+.|+++|+++.+++++|++++++. .+|.+++.++.+|++|++++
T Consensus 29 ~~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 96 (268)
T 3qax_A 29 RNRIWIVGTNA--TYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLEVRE---------FAFDALILNLKKHRIDAILA 96 (268)
T ss_dssp --CEEEEEECS--CBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEEEE---------CCGGGHHHHHHHTSSSEECS
T ss_pred cCCeEEEEECC--CCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEEEEe---------cCHHHHHHHHhCCCccEEee
Confidence 35689999975 7889988764 789999999999999999997655544 34999999999999999998
Q ss_pred ceeeecCcceeeeeccccc--ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 003167 453 DIAIVTNRTKAVDFTQPYI--ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 530 (843)
Q Consensus 453 ~~~i~~~r~~~vdfs~p~~--~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (843)
++..+.+|...++| .||+ ..+..+++++..
T Consensus 97 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 128 (268)
T 3qax_A 97 GMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS----------------------------------------------- 128 (268)
T ss_dssp CCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-----------------------------------------------
T ss_pred cCccCHhHhcceee-ecceecccceEEEEECCC-----------------------------------------------
Confidence 89999999999999 9999 888999998775
Q ss_pred ccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 003167 531 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 610 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~ 610 (843)
.++++++||. |++||+..|
T Consensus 129 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 147 (268)
T 3qax_A 129 -----------------------------------------------------------LETPVLPLTQ--YSSVAVQTG 147 (268)
T ss_dssp -----------------------------------------------------------SCSCCCCGGG--SSCEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEecC
Confidence 4789999995 889999999
Q ss_pred chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCc----ceeeecCCC
Q 003167 611 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSG----WGFAFPRDS 686 (843)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~k~s 686 (843)
+....++.+ .+..+++.+++.++++++|.+|++|+++.+...+.+++++..++.+++..+.... ++++++|++
T Consensus 148 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 224 (268)
T 3qax_A 148 TYQEHYLLS---QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKDR 224 (268)
T ss_dssp SHHHHHHHT---STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTTC
T ss_pred cHHHHHHHh---CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCCC
Confidence 998888854 3456788899999999999999999999999999999988777888877777777 999999999
Q ss_pred C-chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 687 P-LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 687 p-l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
| +++.||++|.++.++|.++++.+||+.
T Consensus 225 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 253 (268)
T 3qax_A 225 PEEIQTIQQAITDLKSEGVIQSLTKKWQL 253 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 8 999999999999999999999999997
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.84 E-value=1.8e-20 Score=189.76 Aligned_cols=218 Identities=25% Similarity=0.412 Sum_probs=183.6
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++|+||+. +++||.+. . ++.+.|+++|+++.+++++|++++++.. .+|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999997 47888776 3 6889999999999999999977655543 2599999999999999999888
Q ss_pred eeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 534 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (843)
..+.+|.+.+.|+.||...+.++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999876510
Q ss_pred hhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHH
Q 003167 535 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAE 614 (843)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~~ 614 (843)
..++++++||. |++||+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 13788999994 8899999999988
Q ss_pred HHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeCCccccCcceeeecCCCCchHHH
Q 003167 615 NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLAIDM 692 (843)
Q Consensus 615 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~~~i 692 (843)
.++.+ .+ .+++.+++.++++++|.+|++|+++.+...+.+++.+.. ++.+++..+...+++++++|++++...+
T Consensus 125 ~~l~~-~~---~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (228)
T 2pyy_A 125 TYLRE-HH---ISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPI 200 (228)
T ss_dssp HHHHH-TT---CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHH
T ss_pred HHHHH-cC---CceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHH
Confidence 88854 33 367788999999999999999999999999988887743 6777777776778999999999999999
Q ss_pred HHHHHhhhccccHHHHHHhhcc
Q 003167 693 STAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 693 n~~i~~l~e~G~~~~~~~kw~~ 714 (843)
|++|.++.++|.++++.+||+.
T Consensus 201 ~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 201 NQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 9999999999999999999987
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.83 E-value=3.7e-20 Score=192.83 Aligned_cols=220 Identities=21% Similarity=0.366 Sum_probs=191.2
Q ss_pred CCeeEEEecCcccccccEE---eecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEE
Q 003167 374 GRQLRIGVPNRVSYRDFVF---KVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 450 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~---~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 450 (843)
.++|+|++.. .++||.+ .+ +++.+.|+++|+++.+++++|++++++. .+|.+++.++.+|++|++
T Consensus 38 ~~~l~v~~~~--~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALNP--DFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVELELSP---------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEECS--CBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCEEEEEE---------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEecC--CCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCceEEEE---------cCHHHHHHHHhCCCccEE
Confidence 4589999974 7889888 44 4789999999999999999997755544 349999999999999999
Q ss_pred EeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 003167 451 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 530 (843)
Q Consensus 451 ~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (843)
++++..+.+|.+.+.|+.||...+.++++++...
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------------- 139 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL---------------------------------------------- 139 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGT----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCcc----------------------------------------------
Confidence 9889999999999999999999999999988751
Q ss_pred ccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 003167 531 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 610 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~ 610 (843)
.+|++++||. |++||+..|
T Consensus 140 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 140 -----------------------------------------------------------ATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp -----------------------------------------------------------TTCSSGGGGC---CEEEEETT
T ss_pred -----------------------------------------------------------ccccCHHHhC--CCeEEEecC
Confidence 4789999995 899999999
Q ss_pred chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccc---cCcceeeecCCCC
Q 003167 611 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFT---KSGWGFAFPRDSP 687 (843)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~k~sp 687 (843)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+.+.+.++++++..+......+. ..+++++++|++|
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKDSK 236 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESSCH
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCCCH
Confidence 99888886543 346788899999999999999999999999999999888777777655444 6678999999998
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.+.||++|.++.++|.++++.+||++
T Consensus 237 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 237 ELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 999999999999999999999999997
No 69
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.83 E-value=4.4e-20 Score=194.90 Aligned_cols=217 Identities=20% Similarity=0.323 Sum_probs=191.1
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEE
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAV 451 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~ 451 (843)
++||||+.. .|+||.+.+. ++.+.|+++|+++.+++++ |++++++.. .|.+++.+|.+|++|+++
T Consensus 55 ~~l~vg~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDKVEFVLT---------EAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGGEEEEEC---------CGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEcC--CCCCceEECC-CCCEeehHHHHHHHHHHHhccCCceEEEEEc---------cHHHHHHHHhCCCeeEEE
Confidence 579999974 7899988774 7899999999999999999 966555443 389999999999999999
Q ss_pred eceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 452 GDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 452 ~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
+++..+.+|.+.++|+.||...+.++++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------ 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS------------------------------------------------
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999987655
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCc
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGS 611 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~ 611 (843)
+|++++||. |++||+..|+
T Consensus 155 -----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~ 173 (291)
T 2yjp_A 155 -----------------------------------------------------------PITDMAQLK--DQTLLVNKGT 173 (291)
T ss_dssp -----------------------------------------------------------CCCSGGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 688999995 8999999999
Q ss_pred hHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcc-eeeecCCCC-ch
Q 003167 612 FAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-LA 689 (843)
Q Consensus 612 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l~ 689 (843)
....++.+.+ +..+++.+++.++++++|.+|++|+++.+.+.+.+++++..++.++...+...++ +++++|++| +.
T Consensus 174 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~ 251 (291)
T 2yjp_A 174 TADAFFTKSH--PEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLL 251 (291)
T ss_dssp HHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEECCSSSCEEECCEEETTCHHHH
T ss_pred cHHHHHHHhC--CCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcCCcccCCcceEEEEeCCCHHHH
Confidence 9888886543 3457888899999999999999999999999999988887778888777777788 999999998 99
Q ss_pred HHHHHHHHhhhccccHHHHHHhhcc
Q 003167 690 IDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 690 ~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.||++|.++.++|.++++.+||+.
T Consensus 252 ~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 252 NWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhCChHHHHHHHhcc
Confidence 9999999999999999999999987
No 70
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.83 E-value=4.4e-20 Score=195.04 Aligned_cols=218 Identities=18% Similarity=0.292 Sum_probs=191.1
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEE
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 450 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 450 (843)
.++|+|++.. .++||.+.+. ++.+.|+++|+++.+++++ |++++++.. .|.+++.++.+|++|++
T Consensus 43 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~~~~---------~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVFG--DKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQFVLV---------EAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEEEEC---------CGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEEEEc---------CHHHHHHHHhCCCeeEE
Confidence 3579999974 7899988764 7899999999999999999 977655543 39999999999999999
Q ss_pred EeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 003167 451 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 530 (843)
Q Consensus 451 ~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (843)
++++..+.+|.+.++|+.||...+.++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 887888999999999999999999999887654
Q ss_pred ccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 003167 531 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 610 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~ 610 (843)
++++++||. |++||+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 688899995 899999999
Q ss_pred chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcc-eeeecCCCC-c
Q 003167 611 SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGW-GFAFPRDSP-L 688 (843)
Q Consensus 611 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~k~sp-l 688 (843)
+....++.+.. +..+++.+++.++++++|.+|++|+++.+...+.+++++..++.+++..+...++ +++++|++| +
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l 239 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKEL 239 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEEEEEEEEEEEECCEEETTCHHH
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEcccccccCceeEEEEeCCCHHH
Confidence 98888885543 3457788899999999999999999999999999998887778887766767777 999999998 9
Q ss_pred hHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 689 AIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 689 ~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
.+.+|++|.++.++|.++++.+||+.
T Consensus 240 ~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 240 KEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 99999999999999999999999997
No 71
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.82 E-value=6.5e-20 Score=192.70 Aligned_cols=216 Identities=19% Similarity=0.308 Sum_probs=189.1
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+|++.. .|+||.+.+. ++.+.|+.+|+++.+++++|++++++.. .|.+++.+|.+|++|++++.
T Consensus 56 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~v~~~~~---------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTEG--TYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVKVEFKET---------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEECS--EETTTEEECT-TSCEESHHHHHHHHHHHHHTCEEEEEEC---------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEECC--CCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEEC---------CHHHHHHHHHCCCcCEEEec
Confidence 4689999975 6899998874 7889999999999999999976555443 39999999999999999987
Q ss_pred eee-ecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 454 IAI-VTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 454 ~~i-~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
+.. +.+|...++|+.||...+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 888 899999999999999999999998765
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCch
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSF 612 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~ 612 (843)
+|++++|| .|++||+..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL--~G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADI--KGVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGC--TTSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHh--CCCEEEEecCch
Confidence 58899999 489999999998
Q ss_pred HHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC--CeEEeC-Cccc-cCcceeeecCCCC-
Q 003167 613 AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC--QFSVRG-QEFT-KSGWGFAFPRDSP- 687 (843)
Q Consensus 613 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~--~l~~~~-~~~~-~~~~~~~~~k~sp- 687 (843)
...++.+ .+ .+++.+++.++++++|.+|++|+++.+...+.+++.+.. ++.+++ ..+. ...++++++|++|
T Consensus 175 ~~~~l~~-~~---~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~ 250 (283)
T 2yln_A 175 YGEKAKA-AG---AQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDE 250 (283)
T ss_dssp HHHHHHH-TT---CEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHH
T ss_pred HHHHHHH-cC---CeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHH
Confidence 8888854 32 467888999999999999999999999999998877754 488887 6776 7789999999988
Q ss_pred chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 688 LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 688 l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
+.+.||++|.++.++|.+++|.+||+.
T Consensus 251 l~~~i~~al~~l~~~g~~~~i~~k~~~ 277 (283)
T 2yln_A 251 AVAKFSTAINELKADGTLKKLGEQFFG 277 (283)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHcC
Confidence 999999999999999999999999997
No 72
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.82 E-value=7.7e-20 Score=192.66 Aligned_cols=222 Identities=21% Similarity=0.278 Sum_probs=189.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHH----CCC-cccEEEEeCCCCCCCCChHHHHHHHHcCccc
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRL----LPY-AVPYKFIPYGDGHKNPTYSELINQITTGVFD 448 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~----l~f-~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~D 448 (843)
.++|+||+.. .++||.+.+. ++.+.|+++|+++.+++. +|. .+++++++ .+|.+++.++.+|++|
T Consensus 16 ~~~l~v~~~~--~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 16 NGVIVVGHRE--SSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTFD 85 (287)
T ss_dssp HTEEEEEECS--EETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSCS
T ss_pred CCeEEEEEcC--CCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCee
Confidence 4689999975 7899998864 689999999999999976 562 13345544 3488999999999999
Q ss_pred EEEeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCC
Q 003167 449 AAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGP 528 (843)
Q Consensus 449 i~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 528 (843)
+++++++.+.+|.+.++||.||...+.++++++..
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------- 120 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--------------------------------------------- 120 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS---------------------------------------------
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCC---------------------------------------------
Confidence 99988889999999999999999999999998665
Q ss_pred CcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEE
Q 003167 529 PRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ 608 (843)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~ 608 (843)
++++++||. |++||+.
T Consensus 121 --------------------------------------------------------------~i~sl~dL~--g~~v~~~ 136 (287)
T 2vha_A 121 --------------------------------------------------------------DIKDFADLK--GKAVVVT 136 (287)
T ss_dssp --------------------------------------------------------------SCCSGGGGT--TCEEEEE
T ss_pred --------------------------------------------------------------CCCCHHHcC--CCEEEEe
Confidence 688999995 8899999
Q ss_pred eCchHHHHHHHhhC--CCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC---CCeEEeCCccccCcceeeec
Q 003167 609 VGSFAENYLIEELS--IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH---CQFSVRGQEFTKSGWGFAFP 683 (843)
Q Consensus 609 ~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~ 683 (843)
.|+....++.+... ....+++.+.+.++++++|.+|++|+++.+...+.+++++. .++.+++..+...+++++++
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (287)
T 2vha_A 137 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLR 216 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEEC
T ss_pred CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEe
Confidence 99988887754321 12356788999999999999999999999999999888773 36888887777888999999
Q ss_pred CCCC-chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 684 RDSP-LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 684 k~sp-l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
|++| +...||++|.++.++|.++++.+||+.
T Consensus 217 k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 248 (287)
T 2vha_A 217 KDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFK 248 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCchHHHHHHHHcC
Confidence 9988 999999999999999999999999998
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.74 E-value=4.5e-18 Score=175.84 Aligned_cols=215 Identities=16% Similarity=0.290 Sum_probs=180.9
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHC---CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEE
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLL---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAA 450 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~ 450 (843)
.++|+||+.. +++||.+.+..++.+.|+++|+++.+++++ |++++++. .+|.+++.+|.+|++|++
T Consensus 37 ~~~l~vg~~~--~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~v~~~~---------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVKN--DVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVA---------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEECS--EETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTSEEEEE---------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEECC--CCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcceEEEE---------cCHHHHHHHHhCCCCCEE
Confidence 3579999975 788998876347899999999999999999 97655544 348999999999999999
Q ss_pred EeceeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCc
Q 003167 451 VGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPR 530 (843)
Q Consensus 451 ~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 530 (843)
++++..+.+|...++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888889999999999999999999998755
Q ss_pred ccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeC
Q 003167 531 KQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVG 610 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~ 610 (843)
++++++||. +++|++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 678999995 889999999
Q ss_pred chHHHHHHHh---hCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcceeeecCCCC
Q 003167 611 SFAENYLIEE---LSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 611 ~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~sp 687 (843)
+....++.+. .+.. .+++.+++.++.+++|.+|++|+++.+...+.+++++..+ +++..+...+++++++|++|
T Consensus 157 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~ 233 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--ILPDSFEPQSYGIVTKKDDP 233 (259)
T ss_dssp CSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE--ECSCCCSEEEECCEEETTCH
T ss_pred CchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC--ccccccccceeEEEEcCCCH
Confidence 8777766442 2432 3567889999999999999999999998888887766554 55666667788999999986
Q ss_pred -chHHHHHHHHhhhccccHHHHHHhhc
Q 003167 688 -LAIDMSTAILTLSENGELQRIHDKWL 713 (843)
Q Consensus 688 -l~~~in~~i~~l~e~G~~~~~~~kw~ 713 (843)
+.+.+|++|.++.++ ++++.+||.
T Consensus 234 ~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 234 AFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 999999999999999 999999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.93 E-value=3.3e-09 Score=111.86 Aligned_cols=215 Identities=14% Similarity=0.111 Sum_probs=146.1
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .++|+..... ..++++.+++++|.++ +++.. .+|++++..|.+|++|+++.+
T Consensus 3 ~~~l~iG~~p--~~~p~~~~~~--------~~~l~~~l~k~lG~~v--e~~~~------~~~~~~i~al~~G~vDi~~~~ 64 (310)
T 3n5l_A 3 QPVINFGIIS--TESSQNLKSI--------WEPFLKDMSQQTGYQV--KAFFA------PDYAGIIQGMRFDKVDIAWYG 64 (310)
T ss_dssp CCEEEEEECC--SSCHHHHHHH--------HHHHHHHHHHHHSSEE--EEECC------SSHHHHHHHHHTTSCSEEECC
T ss_pred CcEEEEEEec--CCCHHHHHHH--------HHHHHHHHHHHhCCCE--EEEeC------CCHHHHHHHHHcCCCCEEEEC
Confidence 3689999985 5666544321 2589999999999664 44432 569999999999999999744
Q ss_pred -eeeec--Ccceeeeecccccc-----cceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 003167 454 -IAIVT--NRTKAVDFTQPYIE-----SGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEF 525 (843)
Q Consensus 454 -~~i~~--~r~~~vdfs~p~~~-----~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~ 525 (843)
..... +|.....|..|+.. ...++++++.
T Consensus 65 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d------------------------------------------- 101 (310)
T 3n5l_A 65 NKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT-------------------------------------------
T ss_pred cHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC-------------------------------------------
Confidence 33322 23333444433210 1234555443
Q ss_pred CCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhh--CCC
Q 003167 526 RGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SND 603 (843)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~~ 603 (843)
.+|++++||++ .|+
T Consensus 102 ----------------------------------------------------------------s~i~sl~DL~~~~kgk 117 (310)
T 3n5l_A 102 ----------------------------------------------------------------SKIDSLEDMLANAKSL 117 (310)
T ss_dssp ----------------------------------------------------------------CSCCSHHHHHHTGGGC
T ss_pred ----------------------------------------------------------------CCCCCHHHHhhhcCCC
Confidence 37999999943 367
Q ss_pred eEEEE-eCchHHHH-----HHHhhCCCC---cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC----CCeEEeC
Q 003167 604 RVGYQ-VGSFAENY-----LIEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 670 (843)
Q Consensus 604 ~i~~~-~~~~~~~~-----l~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 670 (843)
+|++. .|+....+ +.+..+... .+.+...+.++.+.+|.+|++|+.+.+...+..+.++. .++.++.
T Consensus 118 ~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~ 197 (310)
T 3n5l_A 118 TFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIW 197 (310)
T ss_dssp EEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEE
T ss_pred EEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEE
Confidence 89874 34422211 223334432 23344567788999999999999999998888887764 4677765
Q ss_pred CccccCcceeeecCCCC--chHHHHHHHHhhhccccHHHHHHhhc
Q 003167 671 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKWL 713 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw~ 713 (843)
.......++++++++.| +++.++.+|.++.++|..+++.+++-
T Consensus 198 ~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 198 KSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp EEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred ECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 54344567899999954 99999999999999999988888763
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.84 E-value=1.9e-08 Score=106.30 Aligned_cols=215 Identities=15% Similarity=0.184 Sum_probs=144.2
Q ss_pred CCCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 373 NGRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 373 ~g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
+.++|++|+.. .+.|..... ...+|++.|++++|.++ ++... .+|++++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~p--~~~~~~~~~--------~~~~l~~~L~k~lG~~v--e~~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQNLKP--------QWTPFLQDMEKKLGVKV--NAFFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEECC--SSCHHHHHH--------HHHHHHHHHHHHHTSCE--EEECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEec--CCCHHHHHH--------HHHHHHHHHHHHHCCCE--EEEec------CCHHHHHHHHHcCCCcEEEE
Confidence 45789999984 344433221 22479999999999664 44432 56999999999999999974
Q ss_pred -ceeeecC--cceeeeeccccc-----ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 003167 453 -DIAIVTN--RTKAVDFTQPYI-----ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDE 524 (843)
Q Consensus 453 -~~~i~~~--r~~~vdfs~p~~-----~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~ 524 (843)
+.+.+.. |.....|..|+. ....+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444432 333333443321 01234555543
Q ss_pred CCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhh--CC
Q 003167 525 FRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMT--SN 602 (843)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~--~~ 602 (843)
.+|++++||++ .+
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 37999999942 35
Q ss_pred CeEEEE-eCchH----HHH-HHHhhCCCCc--ceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC----CCeEEeC
Q 003167 603 DRVGYQ-VGSFA----ENY-LIEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH----CQFSVRG 670 (843)
Q Consensus 603 ~~i~~~-~~~~~----~~~-l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~----~~l~~~~ 670 (843)
+++++. .|+.. ... +....+.... +.+.+.+..+.+.+|.+|++|+.+.+...+..+.++. .++.++.
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~ 206 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIW 206 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEE
Confidence 678863 34322 222 2233455432 2345677889999999999999999988888777653 3677776
Q ss_pred CccccCcceeeecCCCC--chHHHHHHHHhhhccccHHHHHHhh
Q 003167 671 QEFTKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
.......++++++|+-| +++.|+.+|..+.++|...++.+++
T Consensus 207 ~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 207 KSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp ECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 54444567899999954 9999999999999999988887765
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.73 E-value=2.2e-08 Score=98.26 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=131.1
Q ss_pred cceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecC------cceeeeecccc
Q 003167 397 TDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTN------RTKAVDFTQPY 470 (843)
Q Consensus 397 ~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~------r~~~vdfs~p~ 470 (843)
..++.|+.--|.+.+. |+++++.+. -.|++.+..|.+|++|+++.+.+.+++ |...+||+.||
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~m--------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHM--------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEEC--------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEc--------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4567788888877774 655444443 159999999999999999999999999 99999999999
Q ss_pred cccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcccc
Q 003167 471 IESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRE 550 (843)
Q Consensus 471 ~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (843)
+.+.-.++++++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 97777777766551
Q ss_pred cccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEe
Q 003167 551 NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVA 630 (843)
Q Consensus 551 ~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 630 (843)
..| ++||+..||..+..+.+..- ....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 112 68999999998888865432 4455667
Q ss_pred C-CCHHHHHHHHhcCCcEEEEc--ChhhHHHHHhcCCCeEE--eCC---ccccCcceeeecCCCC-chHHHHHHHHhhhc
Q 003167 631 L-GSPEEYAIALENRTVAAVVD--ERPYIDLFLSDHCQFSV--RGQ---EFTKSGWGFAFPRDSP-LAIDMSTAILTLSE 701 (843)
Q Consensus 631 ~-~~~~~~~~~l~~g~~~a~~~--~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~k~sp-l~~~in~~i~~l~e 701 (843)
+ .+..+++.++.+|++||++. +.+... +..++.. +.. ........++++||.+ +++.+|+.| +
T Consensus 140 ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I----~ 211 (231)
T 2ozz_A 140 VDLSYHESLQRIVKGDVDAVIWNVVAENEL----TMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV----D 211 (231)
T ss_dssp EECCHHHHHHHHHHTSCCEEEEEC-CHHHH----HHTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC----C
T ss_pred EECCHHHHHHHHHcCCccEEEEcCcchhhh----cCCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHh----H
Confidence 7 78999999999999999999 666554 2223332 222 2233455688999975 887777765 3
Q ss_pred cccHHHHHHhhcc
Q 003167 702 NGELQRIHDKWLR 714 (843)
Q Consensus 702 ~G~~~~~~~kw~~ 714 (843)
...+-.++++-..
T Consensus 212 ~~~v~~~Q~~V~~ 224 (231)
T 2ozz_A 212 KHALLAHQQRVVS 224 (231)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 3444455555443
No 77
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.93 E-value=4.9e-05 Score=81.39 Aligned_cols=107 Identities=18% Similarity=0.067 Sum_probs=64.7
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCCcceEeCC-CHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCe
Q 003167 591 PIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQF 666 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l 666 (843)
+|++++||. |++||+..|+.....+. +..++....+..+. +..+...+|.+|++||++...+..........+.
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~g~~~~ 187 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGKI 187 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTSSSEEEESTTHHHHHHTTSEEE
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCCCCEEEechHHHHHHhcCCcEE
Confidence 799999995 99999988876544332 34565544333222 6778999999999999988877664322212122
Q ss_pred EEeCCcc---ccCcceeeecCC----CC-chHHHHHHHHhh
Q 003167 667 SVRGQEF---TKSGWGFAFPRD----SP-LAIDMSTAILTL 699 (843)
Q Consensus 667 ~~~~~~~---~~~~~~~~~~k~----sp-l~~~in~~i~~l 699 (843)
......+ .....+++++++ .| +...|.+++.+.
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 188 IWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 2222211 122345666665 45 566666555444
No 78
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.92 E-value=9.5e-05 Score=78.25 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=60.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCCcc--eEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSR--LVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 664 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~---~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 664 (843)
.+|++++||. |++|++..|+.....+. +..++.... ++.+ +..+...+|.+|++|+++...++......+..
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~ 197 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIWDPWYSALTLDGS 197 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEETTHHHHHHHTTS
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEccHHHHHHHhcCC
Confidence 3799999995 99999998875544332 345655433 3444 68899999999999999988888777655532
Q ss_pred -CeEEeCCccccCcceeeecCC
Q 003167 665 -QFSVRGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 665 -~l~~~~~~~~~~~~~~~~~k~ 685 (843)
++......+......+++++.
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 198 ARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp EEEEEESTTSCCCCEEEEEEHH
T ss_pred cEEEecccccCCCccEEEECHH
Confidence 333333333333344555544
No 79
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.90 E-value=9.3e-05 Score=77.66 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCCCCcceE-eCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCe
Q 003167 591 PIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSIPKSRLV-ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQF 666 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~~~~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l 666 (843)
+|++++||. |++|++..|+....++. +..++....+. .+.+..+.+.++.+|++|+++...++..+...+. .+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~ 172 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG-GV 172 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS-SE
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC-Cc
Confidence 688999995 88999987776554432 34455543332 3456788999999999999998888877765543 34
Q ss_pred EEeCC--ccccCcceeeec----CCCC-chHHHHHHHHhh----hccc-cHHHHHHhhcc
Q 003167 667 SVRGQ--EFTKSGWGFAFP----RDSP-LAIDMSTAILTL----SENG-ELQRIHDKWLR 714 (843)
Q Consensus 667 ~~~~~--~~~~~~~~~~~~----k~sp-l~~~in~~i~~l----~e~G-~~~~~~~kw~~ 714 (843)
.++.. .+....-.+++. +..| +...|++++.+. .+++ ...++..+|++
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 173 RVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp EEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 44422 221222223332 3345 778888877763 3443 35555566654
No 80
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.86 E-value=0.00024 Score=74.09 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCCChHHhhh------CCCeEEEE-eCchH---HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 590 SPIKGIDTLMT------SNDRVGYQ-VGSFA---ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 590 ~~i~s~~dL~~------~~~~i~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
.+++|++||+. ....+|.. .|+.. ...+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~ 199 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQ 199 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHcCCccEEEechHHHHHH
Confidence 58999999985 23466665 34532 22333456664 3457899999999999999999999887766555
Q ss_pred HhcCCCeEEeC---C----------ccc---------cCcceeeecCCCC--chHHHHHHHHhhhccccHHHHHHhh
Q 003167 660 LSDHCQFSVRG---Q----------EFT---------KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 660 ~~~~~~l~~~~---~----------~~~---------~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
++. .+++.+. + .+. ...++++.|+|-| +...+++++.++.+++.+++..+++
T Consensus 200 i~~-g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 200 ITS-GKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHT-TSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHc-CCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 2333321 0 011 1135788999976 9999999999999999887766654
No 81
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.77 E-value=4.9e-05 Score=81.16 Aligned_cols=123 Identities=11% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHH----HHHhhCCCCc--ceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcC
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENY----LIEELSIPKS--RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDH 663 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 663 (843)
.+|++++||. .|++||+..++....+ +.+..++... +++.+ +..+...+|.+|++||++...++......+.
T Consensus 143 s~I~s~~DL~-kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~ 220 (341)
T 3un6_A 143 MHLNEFNNNG-DDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKLG 220 (341)
T ss_dssp CCGGGCCSSS-SCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHSS
T ss_pred CCCCCHHHhC-CCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhcC
Confidence 3789999992 2889999875443332 2234566543 44555 5678899999999999999888887766554
Q ss_pred C-CeEEeCCcc-ccC-cceeeecCC----CC-----chHHHHHHHHhhhccccHHHHHHhhcc
Q 003167 664 C-QFSVRGQEF-TKS-GWGFAFPRD----SP-----LAIDMSTAILTLSENGELQRIHDKWLR 714 (843)
Q Consensus 664 ~-~l~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~in~~i~~l~e~G~~~~~~~kw~~ 714 (843)
. +.......+ ... ...++++++ .| +...+++++..+.+++.-.++..+|++
T Consensus 221 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 221 KGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp CCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred CeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 3 222222222 222 245666554 44 556666777777777644466677765
No 82
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.73 E-value=0.00044 Score=71.80 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=83.4
Q ss_pred CCCCChHHhhhC------CCeEEEE-eCchH---HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 590 SPIKGIDTLMTS------NDRVGYQ-VGSFA---ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 590 ~~i~s~~dL~~~------~~~i~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
.+++|++||+.. ...+|.. .|+.. ...+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~ 190 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPF 190 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHCCCccEEEEcHHHHHHH
Confidence 489999999851 2356654 24432 22333455664 3457899999999999999999999887666554
Q ss_pred HhcCCCeEEeC---C----------cc---------ccCcceeeecCCCC--chHHHHHHHHhhhccccHHHHHHhh
Q 003167 660 LSDHCQFSVRG---Q----------EF---------TKSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 660 ~~~~~~l~~~~---~----------~~---------~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
++. .+++.+. + .+ ....++++.|+|-| +...+++++.++.+++.+++..+++
T Consensus 191 i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 191 IKA-GKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHT-TSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhc-CCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 3343321 0 01 11236788999976 9999999999999999888776665
No 83
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.73 E-value=0.00031 Score=73.28 Aligned_cols=121 Identities=10% Similarity=0.101 Sum_probs=83.0
Q ss_pred CCCCChHHhhhC------CCeEEEE-eCchH---HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 590 SPIKGIDTLMTS------NDRVGYQ-VGSFA---ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 590 ~~i~s~~dL~~~------~~~i~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
.+++|++||+.. ...+|.. .|+.. ...+.+..+.. ...++|....+.+.+|..|++|+.+........+
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~ 203 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQ 203 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHcCCceEEEEcHHHHHHH
Confidence 489999999751 2456655 35432 23343556664 3457899999999999999999999887666554
Q ss_pred HhcCCCeEEe---CC----------cc--------c-cCcceeeecCCCC--chHHHHHHHHhhhccccHHHHHHhh
Q 003167 660 LSDHCQFSVR---GQ----------EF--------T-KSGWGFAFPRDSP--LAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 660 ~~~~~~l~~~---~~----------~~--------~-~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
++. ++++.+ ++ .+ . ...++++.|+|-| ....+++++.++.+++.+++..+++
T Consensus 204 i~~-g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 204 IQA-GKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHT-TSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHc-CCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 443 333322 10 01 0 1135788999976 9999999999999999888776665
No 84
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.60 E-value=0.00046 Score=73.50 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=97.9
Q ss_pred HHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeee----cCcceeeeecccccccceEEEEeccCCCcC
Q 003167 412 VRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIV----TNRTKAVDFTQPYIESGLVVVAPVRKLNSS 487 (843)
Q Consensus 412 ~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~----~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~ 487 (843)
.+..|+++++ .++ +++..++..|.+|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~v~~--~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLDVSI--ADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCEEEE--EEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCeEEE--Eec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 4567866444 442 5689999999999999998765443 45566677777766667777776543
Q ss_pred cceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcccccccccchhHHHHHHHHH
Q 003167 488 AWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFV 567 (843)
Q Consensus 488 ~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~ 567 (843)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEE-eCchHHHHHH---HhhCCCC--cceEeCCCHHHHHHHH
Q 003167 568 VLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK--SRLVALGSPEEYAIAL 641 (843)
Q Consensus 568 ~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~-~~~~~~~~l~---~~~~~~~--~~~~~~~~~~~~~~~l 641 (843)
.++|++++||. |++|++. .|+....++. +..+... .+++.++...+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13799999995 8999998 5765433332 3455543 3557777778999999
Q ss_pred hcCCcEEEEcChhhHHHHHhcC
Q 003167 642 ENRTVAAVVDERPYIDLFLSDH 663 (843)
Q Consensus 642 ~~g~~~a~~~~~~~~~~~~~~~ 663 (843)
.+|++|+++...++......+.
T Consensus 184 ~~G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 184 RSGQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHTSCSEEEEETTHHHHHHHTT
T ss_pred HcCCccEEEecchhHHHHHhCC
Confidence 9999999998888876655543
No 85
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.52 E-value=0.00029 Score=73.57 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=52.2
Q ss_pred ceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec-eeee---cCcceeeeeccccccc
Q 003167 398 DIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD-IAIV---TNRTKAVDFTQPYIES 473 (843)
Q Consensus 398 ~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~-~~i~---~~r~~~vdfs~p~~~~ 473 (843)
..+.|+.+.+-+-+.++.|++ +++.++ +....++..|.+|++|+++++ .... .+....+.+..++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 344677788888888899955 444442 234589999999999999876 2222 2333455566666666
Q ss_pred ceEEEEeccC
Q 003167 474 GLVVVAPVRK 483 (843)
Q Consensus 474 ~~~~~v~~~~ 483 (843)
+..+++++..
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 7777776544
No 86
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=97.22 E-value=0.0024 Score=66.93 Aligned_cols=144 Identities=11% Similarity=0.063 Sum_probs=94.8
Q ss_pred CCeEEEEc-CCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc--CCcEEEEEE
Q 003167 3 TDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiG-p~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~~v~ii~ 79 (843)
++|++||. |..+.........+.+.++|+|......+. .+.+..+.+++...+..++++|... |.++|+++.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~ 130 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGT 130 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 46777764 444433333445566789999987654321 1233446677777788888888776 999999998
Q ss_pred ec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 ND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.+ +.......+.|.+++++.|+++....... .+..+....+.++.+. ++++|+.. +...+..+++++++.|
T Consensus 131 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G 205 (313)
T 2h3h_A 131 GSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAG 205 (313)
T ss_dssp SCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcC
Confidence 64 33456678899999999999876433222 2244455556665543 46777654 4556777899999998
Q ss_pred C
Q 003167 156 M 156 (843)
Q Consensus 156 ~ 156 (843)
.
T Consensus 206 ~ 206 (313)
T 2h3h_A 206 K 206 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.19 E-value=0.0015 Score=67.06 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=95.3
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|++||....+... .....+...++|+|......+ + +..+..++...+..+++++...|-++++++..+.
T Consensus 54 ~~vdgiI~~~~~~~~-~~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 124 (276)
T 2h0a_A 54 YLTDGLILASYDLTE-RFEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEE 124 (276)
T ss_dssp CCCSEEEEESCCCC-------CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCS
T ss_pred CCCCEEEEecCCCCH-HHHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 467777743322222 334456678999998754332 1 3456667777778888888888999999998754
Q ss_pred -C-----CCc-chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHH
Q 003167 83 -D-----QGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQR 153 (843)
Q Consensus 83 -~-----~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~ 153 (843)
. ... ...+.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|+ +.+...+..+++++++
T Consensus 125 ~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~ 201 (276)
T 2h0a_A 125 PDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVR 201 (276)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHH
Confidence 3 445 67889999999999764321111111 1234444555665544 477766 5666778889999999
Q ss_pred cCCcccceEEEEe
Q 003167 154 LGMMDSGYVWIAT 166 (843)
Q Consensus 154 ~g~~~~~~~~i~~ 166 (843)
.|+..++.+.|.+
T Consensus 202 ~g~~vP~di~vvg 214 (276)
T 2h0a_A 202 LGLTPGRDVRVLG 214 (276)
T ss_dssp TSCTTTTSEEEEE
T ss_pred cCCCCCCCeEEEE
Confidence 9987655555543
No 88
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=96.98 E-value=0.0023 Score=66.24 Aligned_cols=153 Identities=8% Similarity=-0.049 Sum_probs=96.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhccc-CCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~-~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
.+|.+||....+.....+ ..+.+ .++|+|......+ + +.+..+..++...+..+++++...|.++|+++..+
T Consensus 76 ~~vdgii~~~~~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~ 148 (296)
T 3brq_A 76 LRCDAIMIYPRFLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGS 148 (296)
T ss_dssp TTCSEEEEECSSSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred cCCCEEEEecCCCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 467777754332222223 34455 7999998754322 1 23345666777777788888877899999999865
Q ss_pred C--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 82 D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 82 ~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
. ..+....+.|.+++++.|+.+.....+... .+..+....+.++.+ .++++|++ .+...+..+++++++.|+.
T Consensus 149 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~ 225 (296)
T 3brq_A 149 MDSPTSIERLAGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVA 225 (296)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCC
T ss_pred CCCccHHHHHHHHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCC
Confidence 3 345667889999999999765432222222 223444455666544 35777765 4566677889999999986
Q ss_pred ccceEEEE
Q 003167 158 DSGYVWIA 165 (843)
Q Consensus 158 ~~~~~~i~ 165 (843)
.++.+-|+
T Consensus 226 vP~di~vv 233 (296)
T 3brq_A 226 VPEQVSVI 233 (296)
T ss_dssp TTTTCEEE
T ss_pred CCCceEEE
Confidence 55444443
No 89
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.95 E-value=0.0015 Score=68.84 Aligned_cols=61 Identities=26% Similarity=0.217 Sum_probs=44.8
Q ss_pred CCCChHHhhhCCCeEEEE-eCchHH---HHHHHhhCCCCcc--eEeCCCHHHHHHHHhcCCcEEEEcCh
Q 003167 591 PIKGIDTLMTSNDRVGYQ-VGSFAE---NYLIEELSIPKSR--LVALGSPEEYAIALENRTVAAVVDER 653 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~-~~~~~~---~~l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~~~~~ 653 (843)
+|++++||+ +++|++. .|+... ..+.+..++.... .+.|.+..+.+.+|..|++|+++...
T Consensus 137 ~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 137 NISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp SCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 899999996 7889885 455332 2233456665443 47788999999999999999998743
No 90
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.93 E-value=0.0014 Score=67.77 Aligned_cols=151 Identities=9% Similarity=-0.032 Sum_probs=94.4
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|++||....+.....+..+ .++|+|......+. +.+..+..++...+..++++|...|.++|+++..+.
T Consensus 62 ~~vdgiI~~~~~~~~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~ 132 (288)
T 2qu7_A 62 QNVSAIILVPVKSKFQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANP 132 (288)
T ss_dssp TTEEEEEECCSSSCCCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCT
T ss_pred cCccEEEEecCCCChHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCC
Confidence 578888865443222222222 78999987553321 234456667777788888888888999999998643
Q ss_pred --CCCcchHHHHHHHHHhcCcEEEEeeec--CCCCCC----ChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 83 --DQGRNGVTALGDKLAEIRCKISYKSAL--PPDQSV----TETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~~~----~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
.......+.|.+++++.|+.+.....+ ... . +..+-...+.++.+.++++|++ .+...+..+++++++.
T Consensus 133 ~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~ 209 (288)
T 2qu7_A 133 NISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKES 209 (288)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHh
Confidence 345667889999999999765421111 111 1 1222333444443347888765 4556677789999999
Q ss_pred CCcccceEEEE
Q 003167 155 GMMDSGYVWIA 165 (843)
Q Consensus 155 g~~~~~~~~i~ 165 (843)
|+..++.+-|+
T Consensus 210 g~~vP~di~vv 220 (288)
T 2qu7_A 210 EKEIKKDVIIV 220 (288)
T ss_dssp SCCBTTTBEEE
T ss_pred CCCCCCceEEE
Confidence 98655444443
No 91
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=96.90 E-value=0.011 Score=62.23 Aligned_cols=148 Identities=11% Similarity=0.040 Sum_probs=95.9
Q ss_pred eEEEEcCCCh-HHHHHHHHhcccCCCcEEecccCCCCCCCCCC--CceEEcCCChHHhHHHHHHHHHH--cCCcEEEEEE
Q 003167 5 TLAIVGPQSA-VMAHVLSHLANELQVPLLSFTALDPTLSPLQY--PFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIF 79 (843)
Q Consensus 5 V~aiiGp~~S-~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~--p~~fR~~p~d~~~~~ai~~ll~~--~~w~~v~ii~ 79 (843)
|.+||....+ .........+...++|+|......+..+...+ +.+..+..++...+..++++|.. .|.++|++|.
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 143 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALG 143 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 8888754333 32223445556679999987654332111111 34566777888788888888776 6999999998
Q ss_pred ecC--CCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcC---CCeEEEEEcChhhHHHHHHHHHH
Q 003167 80 NDD--DQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQR 153 (843)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~viv~~~~~~~~~~i~~~a~~ 153 (843)
... .......+.|.+++++. |+.+...... . .+..+....+.++.+. ++++|+. .+...+..+++++++
T Consensus 144 g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~~~~--~--~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~ 218 (332)
T 2rjo_A 144 GIFSNVPAIERKAGLDAALKKFPGIQLLDFQVA--D--WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRA 218 (332)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCTTEEEEEEEEC--T--TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEEeeccC--C--CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHH
Confidence 643 33566788899999999 9887643221 1 2244444555555443 5666554 555677789999999
Q ss_pred cCCc
Q 003167 154 LGMM 157 (843)
Q Consensus 154 ~g~~ 157 (843)
.|+.
T Consensus 219 ~G~~ 222 (332)
T 2rjo_A 219 EGLA 222 (332)
T ss_dssp TTCB
T ss_pred cCCC
Confidence 9975
No 92
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.89 E-value=0.0045 Score=65.11 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=63.9
Q ss_pred CCCCChHHhhhCCCeEEEEe-CchHHH---HHHHhhCCCC-cceEeCCCHHHHHHHHhcC----CcEEEEcChhhHHHHH
Q 003167 590 SPIKGIDTLMTSNDRVGYQV-GSFAEN---YLIEELSIPK-SRLVALGSPEEYAIALENR----TVAAVVDERPYIDLFL 660 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~-~~~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~a~~~~~~~~~~~~ 660 (843)
++|++++|| ++||+.. |+.... .+.+..+++. .+++.+++..+...+|.+| ++||++.+........
T Consensus 110 ~~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~ 185 (321)
T 2x7q_A 110 DDVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYY 185 (321)
T ss_dssp TTCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHH
T ss_pred CCCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhc
Confidence 379999999 5799986 654332 2223456553 4667777888999999999 9999875533333322
Q ss_pred hcCCCeEEeCCccccCc-ceeeecCC----CC-----chHHHHHHHHhhhcc
Q 003167 661 SDHCQFSVRGQEFTKSG-WGFAFPRD----SP-----LAIDMSTAILTLSEN 702 (843)
Q Consensus 661 ~~~~~l~~~~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e~ 702 (843)
+...+..+.+.+...+ .+++++++ .| +...+.+++..+.++
T Consensus 186 -~~g~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 186 -DNHEIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp -HTTSEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred -cCCceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 2334555444332222 35666654 34 344444554444443
No 93
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.82 E-value=0.0063 Score=62.68 Aligned_cols=154 Identities=11% Similarity=0.053 Sum_probs=94.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhccc-CCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANE-LQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~-~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
++|++||....+... .+.+.+.+ .++|+|......+. . ++...+.+++...+..+++++...|.++|+++..+
T Consensus 62 ~~vdgii~~~~~~~~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~ 135 (289)
T 1dbq_A 62 KRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGP 135 (289)
T ss_dssp TTCSEEEEECSCCCH-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCEEEEEeccCCH-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 467777742222111 22333333 79999987653321 1 22335566777777888888888899999999864
Q ss_pred --CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 82 --DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 82 --~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
........+.|.+++++.|+.+.....+... .+..+....+.++.+ .++++|++ .+...+..+++++++.|+.
T Consensus 136 ~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 212 (289)
T 1dbq_A 136 LERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLR 212 (289)
T ss_dssp ------CHHHHHHHHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCC
T ss_pred CccccHHHHHHHHHHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCC
Confidence 3456778899999999999765422122211 123444455566554 35777665 4556777889999999986
Q ss_pred ccceEEEE
Q 003167 158 DSGYVWIA 165 (843)
Q Consensus 158 ~~~~~~i~ 165 (843)
.++-+-|.
T Consensus 213 vP~di~vv 220 (289)
T 1dbq_A 213 VPQDVSLI 220 (289)
T ss_dssp TTTTCEEE
T ss_pred CCCceEEE
Confidence 54444443
No 94
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=96.81 E-value=0.016 Score=60.12 Aligned_cols=146 Identities=11% Similarity=0.000 Sum_probs=92.1
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH-cCCc-EEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FGWG-EVIAIF 79 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~-~~w~-~v~ii~ 79 (843)
++|.+|| .|..+.........+...++|+|...... ... +.+..+..++...+..+++++.. .|-+ +++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~ 134 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYV 134 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEe
Confidence 4677765 56555444445566677899999876531 111 33455677777778888888766 8887 999887
Q ss_pred ecC--CCCcchHHHHHHHHHhcC--cEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHH
Q 003167 80 NDD--DQGRNGVTALGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQR 153 (843)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~ 153 (843)
.+. .......+.|.+++++.+ +++... .+... .+..+....+.++.+. ++++|+. .+...+..+++++++
T Consensus 135 g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~ 210 (303)
T 3d02_A 135 GSLTVPQHNLWADLLVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKE 210 (303)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHh
Confidence 542 234566788999998765 444321 11212 2344555566665554 3455554 445567778999999
Q ss_pred cCCc
Q 003167 154 LGMM 157 (843)
Q Consensus 154 ~g~~ 157 (843)
.|+.
T Consensus 211 ~g~~ 214 (303)
T 3d02_A 211 KRAK 214 (303)
T ss_dssp TTCT
T ss_pred cCCC
Confidence 9975
No 95
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=96.78 E-value=0.0041 Score=64.52 Aligned_cols=155 Identities=11% Similarity=0.004 Sum_probs=101.9
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcC--CcEEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG--WGEVIAIF 79 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~--w~~v~ii~ 79 (843)
.+|++|| .|..+.........+...++|+|......+.. ...+.+..+..++...+..++++|...| -++++++.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~ 137 (297)
T 3rot_A 60 TYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLN 137 (297)
T ss_dssp TCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4666666 55555544555666777899999876544321 1123455567788888888899888878 89999997
Q ss_pred ecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 NDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.+. .......+.|.+++++.|+++.... . . .........+.++.+ .++++|+ +.+...+..+++++++.|
T Consensus 138 g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g 211 (297)
T 3rot_A 138 PQPGHIGLEKRAYGIKTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPD 211 (297)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcC
Confidence 643 3345678999999999999987644 1 2 224444555655443 3456655 455667777888998888
Q ss_pred Ccccc-eEEEE
Q 003167 156 MMDSG-YVWIA 165 (843)
Q Consensus 156 ~~~~~-~~~i~ 165 (843)
+..++ .+-|+
T Consensus 212 ~~vP~~dv~vi 222 (297)
T 3rot_A 212 RYDFNYQPQVY 222 (297)
T ss_dssp HHTCCCCCEEE
T ss_pred CccCCCceEEE
Confidence 75443 34333
No 96
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.75 E-value=0.01 Score=61.12 Aligned_cols=152 Identities=9% Similarity=-0.032 Sum_probs=95.3
Q ss_pred CCeEEEEcCCCh-HHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc-C-CcEEEEEE
Q 003167 3 TDTLAIVGPQSA-VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiGp~~S-~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~-~-w~~v~ii~ 79 (843)
++|++||....+ .........+.+.++|+|......+. .+.+..+.+++...+..+++++... | -++|+++.
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~ 138 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVIS 138 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEE
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 467777753333 22223445566789999987553321 1234567777777788888887664 6 99999998
Q ss_pred ecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 NDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.+. .......+.|.+++++.|..+.... ... .+..+....+.++.+. .+++|++ .+...+..+++++++.|
T Consensus 139 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G 213 (289)
T 3brs_A 139 FVKNSKTAMDREEGLKIGLSDDSNKIEAIY--YCD--SNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMS 213 (289)
T ss_dssp SCTTSHHHHHHHHHHHHHHGGGGGGEEEEE--ECT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCcEEeee--cCC--CCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcC
Confidence 643 2445678889999999887644322 112 2244444555555443 4666554 55567778899999999
Q ss_pred CcccceEEEE
Q 003167 156 MMDSGYVWIA 165 (843)
Q Consensus 156 ~~~~~~~~i~ 165 (843)
+. .+...++
T Consensus 214 ~~-~di~vvg 222 (289)
T 3brs_A 214 LE-AKVKLVC 222 (289)
T ss_dssp CT-TTSEEEE
T ss_pred CC-CCEEEEE
Confidence 86 3333443
No 97
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.70 E-value=0.0052 Score=63.46 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+++|++||........ .....+...++|+|......+. + +..+..++...+..++++|...|-++++++..+
T Consensus 63 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 134 (290)
T 3clk_A 63 ERPVMGILLLSIALTD-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGID 134 (290)
T ss_dssp SSCCSEEEEESCC-----CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCC
T ss_pred hcCCCEEEEecccCCH-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3567777743322222 2334456689999987553321 2 334566777777888888888899999999864
Q ss_pred --CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 82 --DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 82 --~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
........+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|++ .+...+..+++++++.|+..
T Consensus 135 ~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~v 211 (290)
T 3clk_A 135 QYPYTGRKRLAGYKKALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEV 211 (290)
T ss_dssp CCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCCcchHHHHHHHHHHHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCC
Confidence 3345667889999999999765321111111 123334445555543 46777665 45566778899999999865
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++.+-|.
T Consensus 212 P~di~vv 218 (290)
T 3clk_A 212 PKDLSIV 218 (290)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5444443
No 98
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=96.69 E-value=0.018 Score=59.18 Aligned_cols=150 Identities=9% Similarity=0.014 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|++||..........+.. +. .++|+|......+ + +.+..+..++...+..++++|...|-++|+++..+
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~-l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 133 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPELQN-II-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHD 133 (285)
T ss_dssp TTCCSEEEECCCGGGHHHHHH-HH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCCCCEEEEeCCCCChHHHHH-Hh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 357888875433222223333 34 8999998755332 1 12334556666667778888877899999999865
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH--HhcC--CCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK--VRMM--EARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~--i~~~--~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.. ......+.|.+++++.|+.+. ...-... ..+-...+.+ +.+. ++++|++ .+...+..+++++++.|
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g 207 (285)
T 3c3k_A 134 LAYQYAQHRESGYLNRLKFHGLDYS-RISYAEN----LDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESG 207 (285)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCCCC-EEEECSS----SSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CccccHHHHHHHHHHHHHHcCCCce-EeecCCC----hHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcC
Confidence 33 345667889999999997654 1111111 2233344555 5443 5777664 55666778899999999
Q ss_pred CcccceEEEE
Q 003167 156 MMDSGYVWIA 165 (843)
Q Consensus 156 ~~~~~~~~i~ 165 (843)
+..++-+-|.
T Consensus 208 ~~vP~di~vv 217 (285)
T 3c3k_A 208 LSIPQDVAVV 217 (285)
T ss_dssp CCTTTTCEEE
T ss_pred CCCCCceEEE
Confidence 8755544444
No 99
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.62 E-value=0.0057 Score=64.62 Aligned_cols=154 Identities=13% Similarity=0.015 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|++||-....... .....+...++|+|......+ + +.+..+..++..-+..++++|...|.++++++..+
T Consensus 114 ~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 186 (332)
T 2hsg_A 114 GKQVDGIIFMSGNVTE-EHVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGT 186 (332)
T ss_dssp CCSSCCEEECCSSCCH-HHHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESC
T ss_pred hCCCcEEEEecCCCCH-HHHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3567777743322222 233345668999998755332 1 12233555666667778888888899999999865
Q ss_pred C---CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 82 D---DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 82 ~---~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
. .......+.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|++ .+...+..+++++++.|+
T Consensus 187 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~ 263 (332)
T 2hsg_A 187 LEEPINHAKKVKGYKRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGL 263 (332)
T ss_dssp TTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred cccCccHHHHHHHHHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCC
Confidence 3 235677899999999999765321111111 1233334455555443 5777764 566677889999999998
Q ss_pred cccceEEEE
Q 003167 157 MDSGYVWIA 165 (843)
Q Consensus 157 ~~~~~~~i~ 165 (843)
..++-+-|.
T Consensus 264 ~vP~disvv 272 (332)
T 2hsg_A 264 NVPNDLEII 272 (332)
T ss_dssp CHHHHCEEE
T ss_pred CCCCCeEEE
Confidence 654444333
No 100
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.62 E-value=0.0094 Score=61.36 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=94.4
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|++||-....... .....+...++|+|......+ +.. +..+..++...+..++++|...|.++++++...
T Consensus 62 ~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 134 (287)
T 3bbl_A 62 SGNVDGFVLSSINYND-PRVQFLLKQKFPFVAFGRSNP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWP 134 (287)
T ss_dssp TTCCSEEEECSCCTTC-HHHHHHHHTTCCEEEESCCST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred cCCCCEEEEeecCCCc-HHHHHHHhcCCCEEEECCcCC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 3567777743222111 223445568999998755322 112 234556677777778888877899999999864
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-C---CCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-M---EARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~---~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.. ......+.|.+++++.|+.+.....+... .+..+-...+.++.+ . ++++|+. .+...+..+++++++.|
T Consensus 135 ~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G 211 (287)
T 3bbl_A 135 EDSRVGNDRLQGYLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERG 211 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcC
Confidence 32 34566888999999999765321111111 123444455566554 3 5677665 45666778899999999
Q ss_pred CcccceEEEE
Q 003167 156 MMDSGYVWIA 165 (843)
Q Consensus 156 ~~~~~~~~i~ 165 (843)
+..++-+-|+
T Consensus 212 ~~vP~di~vi 221 (287)
T 3bbl_A 212 LTIGTDLAII 221 (287)
T ss_dssp CCBTTTBEEE
T ss_pred CCCCCCEEEE
Confidence 8755444333
No 101
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=96.60 E-value=0.018 Score=60.31 Aligned_cols=145 Identities=13% Similarity=-0.006 Sum_probs=89.1
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH---cCCcEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY---FGWGEVIAI 78 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~---~~w~~v~ii 78 (843)
++|.+|| .|..+.....+...+...+||+|.+....+ ... +..+.+..++...+..++++|.. .|-++++++
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i 134 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFF 134 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 4677744 666554434455667778999999854321 111 12233256666677778887755 578999999
Q ss_pred Eec--CCCCcchHHHHHHHHHhc--CcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHH
Q 003167 79 FND--DDQGRNGVTALGDKLAEI--RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 79 ~~d--~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~ 152 (843)
... +.......+.+.+.+++. ++++.....-. .+..+....+.++.+. ++++|+. .+...+..++++++
T Consensus 135 ~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~ 209 (316)
T 1tjy_A 135 YSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAE 209 (316)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHH
T ss_pred EcCCCChhHHHHHHHHHHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHH
Confidence 853 334456678888999776 56655432212 2244445555555443 4566554 45566777889999
Q ss_pred HcCCc
Q 003167 153 RLGMM 157 (843)
Q Consensus 153 ~~g~~ 157 (843)
+.| .
T Consensus 210 ~~G-~ 213 (316)
T 1tjy_A 210 NLK-R 213 (316)
T ss_dssp HTT-C
T ss_pred HcC-C
Confidence 988 5
No 102
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.58 E-value=0.0051 Score=63.49 Aligned_cols=153 Identities=10% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|.+||-....... .....+...++|+|......+. +.+..+..++...+..++++|...|-++++++..+.
T Consensus 66 ~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 138 (290)
T 2rgy_A 66 RDCDGVVVISHDLHD-EDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPF 138 (290)
T ss_dssp TTCSEEEECCSSSCH-HHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCT
T ss_pred cCccEEEEecCCCCH-HHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 467777743222112 2233445579999987553321 123346667777777788888888999999998653
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
. ......+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..
T Consensus 139 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~v 215 (290)
T 2rgy_A 139 TASDNVERLDGFFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISV 215 (290)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCC
Confidence 2 34566888999999998764321111111 123333344444433 4678776 456667778999999999875
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++-+-|+
T Consensus 216 P~di~vv 222 (290)
T 2rgy_A 216 PGDVSVI 222 (290)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5444443
No 103
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=96.56 E-value=0.012 Score=60.89 Aligned_cols=152 Identities=12% Similarity=-0.025 Sum_probs=94.9
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|++||-.........+...+...++|+|......+ + +.+..+..++...+..++++|...|.++|+++....
T Consensus 75 ~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~ 148 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALP 148 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECT
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4677777433222122234456678999998765332 1 123345567777777788888888999999998753
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
. ......+.|.+++++.|+...... ... .+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..
T Consensus 149 ~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~v 223 (293)
T 2iks_A 149 ELSVSFLREQGFRTAWKDDPREVHFLY--ANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKL 223 (293)
T ss_dssp TSHHHHHHHHHHHHHHTTCCCCEEEEE--ESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSC
T ss_pred ccccHHHHHHHHHHHHHHcCCCccEEE--cCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 2 345678889999999987433221 111 1234444555665443 4677654 45566778899999999865
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++.+-|+
T Consensus 224 P~di~vv 230 (293)
T 2iks_A 224 PSDLAIA 230 (293)
T ss_dssp CSSCEEE
T ss_pred CCceEEE
Confidence 5444443
No 104
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.55 E-value=0.016 Score=59.04 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=94.6
Q ss_pred CCeEEEE--cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aii--Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
.+|++|| +...+. .....+...++|+|......+ + +.+..+..++...+..++++|...|.++++++..
T Consensus 58 ~~vdgii~~~~~~~~---~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~ 128 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQ---RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGA 128 (275)
T ss_dssp SCCCCEEEESSCCCH---HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred cCCCEEEEeCCCCCH---HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 4566655 332222 233345567999998754322 1 2334566777777778888888789999999987
Q ss_pred cCC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 81 DDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 81 d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
+.. ......+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+. .+...+..+++++++.|+
T Consensus 129 ~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 205 (275)
T 3d8u_A 129 RGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVL 205 (275)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCC
Confidence 533 34567889999999999764322222222 2244444555555443 4777664 456667788999999998
Q ss_pred cccceEEEE
Q 003167 157 MDSGYVWIA 165 (843)
Q Consensus 157 ~~~~~~~i~ 165 (843)
..++.+-|.
T Consensus 206 ~vP~di~vv 214 (275)
T 3d8u_A 206 KVPTDIAII 214 (275)
T ss_dssp CTTTTCEEE
T ss_pred CCCCceEEE
Confidence 655444444
No 105
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.54 E-value=0.0093 Score=61.50 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=98.3
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|.+||-...... ......+.+.++|+|......+.. +.+..+..++...+..++++|...|-++++++..+.
T Consensus 68 ~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 141 (292)
T 3k4h_A 68 RQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGS 141 (292)
T ss_dssp TCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCT
T ss_pred CCCCEEEEeCCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcc
Confidence 56777763222211 234556677899999875543221 123346667777778888888888999999998653
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
+ ......+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++.+++.|+..
T Consensus 142 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 218 (292)
T 3k4h_A 142 DLLVTRDRLAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVV 218 (292)
T ss_dssp TBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred cchhHHHHHHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCC
Confidence 3 34566889999999999765322112112 2244455556666554 566765 456667778999999999875
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++-+-|+
T Consensus 219 P~di~vi 225 (292)
T 3k4h_A 219 PKDVSIV 225 (292)
T ss_dssp TTTCEEE
T ss_pred CCeEEEE
Confidence 5444443
No 106
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.51 E-value=0.0068 Score=64.03 Aligned_cols=154 Identities=9% Similarity=0.019 Sum_probs=94.0
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|++||-.........+ ..+...++|+|......+ +.. +..+..++..-+..++++|...|.++++++..+.
T Consensus 118 ~~vdgiI~~~~~~~~~~~-~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 190 (332)
T 2o20_A 118 KQVDGIVYMGSSLDEKIR-TSLKNSRTPVVLVGTIDG---DKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSL 190 (332)
T ss_dssp TTCSEEEECSSCCCHHHH-HHHHHHCCCEEEESCCCT---TSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCT
T ss_pred CCCCEEEEeCCCCCHHHH-HHHHhCCCCEEEEccccC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 467777743321112222 334467899998755332 112 2235566666677788888888999999998653
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+ .+....+.|.+++++.|+.+.....+... .+..+-...+.++.+.++++|++ .+...+..+++++++.|+..++
T Consensus 191 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~ 267 (332)
T 2o20_A 191 KDVENTERMVGYQEALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPE 267 (332)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTT
T ss_pred ccccHHHHHHHHHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCcc
Confidence 2 34566888999999999765422112212 12333333444443337888776 4556677899999999987655
Q ss_pred eEEEEe
Q 003167 161 YVWIAT 166 (843)
Q Consensus 161 ~~~i~~ 166 (843)
-+-|.+
T Consensus 268 disvig 273 (332)
T 2o20_A 268 DFEIIS 273 (332)
T ss_dssp TCEEEE
T ss_pred CEEEEE
Confidence 444443
No 107
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=96.51 E-value=0.018 Score=59.30 Aligned_cols=146 Identities=13% Similarity=0.047 Sum_probs=95.7
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH--cCCcEEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY--FGWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~--~~w~~v~ii~ 79 (843)
.+|++|| .|..+.........+.+.++|+|......+ +.+..+..++...+..+++++.. .|-++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~ 132 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFN 132 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 3566666 566655566667777888999998765432 12344666777778888888877 8999999997
Q ss_pred ecCC--CCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcC-----CCeEEEEEcChhhHHHHHHHH
Q 003167 80 NDDD--QGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM-----EARVIVVHGYSRTGLMVFDVA 151 (843)
Q Consensus 80 ~d~~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-----~~~viv~~~~~~~~~~i~~~a 151 (843)
.+.+ ......+.|.+++++. |+++.....+... ..+.......+.++.+. ++++|+ +.+...+..+++++
T Consensus 133 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al 210 (291)
T 3l49_A 133 GFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQAL 210 (291)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHH
Confidence 5432 3345678899999998 6775543333222 01123333445554443 567774 55667778889999
Q ss_pred HHcCCc
Q 003167 152 QRLGMM 157 (843)
Q Consensus 152 ~~~g~~ 157 (843)
++.|+.
T Consensus 211 ~~~g~~ 216 (291)
T 3l49_A 211 QAAGRT 216 (291)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 999975
No 108
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=96.49 E-value=0.027 Score=59.07 Aligned_cols=153 Identities=7% Similarity=0.082 Sum_probs=94.6
Q ss_pred CCeEEEEcCCChHH-HHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc--CCcEEEEEE
Q 003167 3 TDTLAIVGPQSAVM-AHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiGp~~S~~-~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~~v~ii~ 79 (843)
.+|++||....+.. .......+...++|+|......+. .+.+..+.+++...+..++++|... |.++|+++.
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~ 135 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELT 135 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 56888876444332 223344556689999987543221 1234455667777777788877664 999999998
Q ss_pred ecCC--CCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 80 NDDD--QGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 80 ~d~~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
.+.. ......+.|.+++++. |+.+.... ... .+..+....+.++.+ .++++|+. .+...+..+++++++.
T Consensus 136 ~~~~~~~~~~R~~Gf~~al~~~pg~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~ 210 (325)
T 2x7x_A 136 GLSGSTPAMERHQGFMAAISKFPDIKLIDKA--DAA--WERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMA 210 (325)
T ss_dssp SCTTSHHHHHHHHHHHHHHHTCTEEEEEEEE--ECT--TSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeee--cCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHc
Confidence 6432 3456688899999998 88765422 111 123333444555443 35777764 4555677788999999
Q ss_pred CCcccceEEEEe
Q 003167 155 GMMDSGYVWIAT 166 (843)
Q Consensus 155 g~~~~~~~~i~~ 166 (843)
|+ ..+...++.
T Consensus 211 Gi-p~dv~vig~ 221 (325)
T 2x7x_A 211 GR-EKEMIFVGI 221 (325)
T ss_dssp TC-TTSSEEEEE
T ss_pred CC-CCCeEEEEE
Confidence 96 333334443
No 109
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.48 E-value=0.028 Score=57.41 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=88.1
Q ss_pred HhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHHHhc
Q 003167 22 HLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAEI 99 (843)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~~ 99 (843)
..+.+.++|+|......+ + +.+..+..++...+..+++.|...|.++++++..+.. ......+.|.+++++.
T Consensus 74 ~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~ 147 (277)
T 3cs3_A 74 EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRF 147 (277)
T ss_dssp HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHc
Confidence 344568999998754322 1 2344566677777777888887889999999986532 3456688899999999
Q ss_pred CcEEEEeeecCCCCCCChhHHHHHHHHHhcC---CCeEEEEEcChhhHHHHHHHHHHcCCcccceEEEEe
Q 003167 100 RCKISYKSALPPDQSVTETDVRNELVKVRMM---EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 100 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~---~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~~ 166 (843)
|+.+. .. ... .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++.+.|++
T Consensus 148 g~~~~-~~--~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 148 GIPYE-II--QGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp TCCEE-EE--ECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred CCCee-EE--eCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 98765 21 112 2244444556666544 567665 45566677889999999986555555553
No 110
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=96.45 E-value=0.018 Score=59.84 Aligned_cols=150 Identities=8% Similarity=-0.001 Sum_probs=94.1
Q ss_pred CCeEEEEcCC-ChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH------------
Q 003167 3 TDTLAIVGPQ-SAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY------------ 69 (843)
Q Consensus 3 ~~V~aiiGp~-~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~------------ 69 (843)
++|.+||-.. ...........+...++|+|......+...-..++.+..+..++...+..++++|..
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g 137 (309)
T 2fvy_A 58 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 137 (309)
T ss_dssp TTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTC
T ss_pred cCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccC
Confidence 4677776533 333233444556678999998755322100012345667778888888888887766
Q ss_pred cCCcEEEEEEecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC----CCeEEEEEcChhh
Q 003167 70 FGWGEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM----EARVIVVHGYSRT 143 (843)
Q Consensus 70 ~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~----~~~viv~~~~~~~ 143 (843)
.|-++|+++.... .......+.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|++ .+...
T Consensus 138 ~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~ 214 (309)
T 2fvy_A 138 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAM 214 (309)
T ss_dssp SSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHH
T ss_pred CCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchh
Confidence 6888999998642 345667888999999999865433222222 2234444555555443 5677664 55666
Q ss_pred HHHHHHHHHHcC
Q 003167 144 GLMVFDVAQRLG 155 (843)
Q Consensus 144 ~~~i~~~a~~~g 155 (843)
+..+++++++.|
T Consensus 215 a~g~~~al~~~g 226 (309)
T 2fvy_A 215 AMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 778899999988
No 111
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.44 E-value=0.01 Score=61.57 Aligned_cols=155 Identities=11% Similarity=0.038 Sum_probs=93.7
Q ss_pred CCCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCC--cEEEEE
Q 003167 2 ETDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGW--GEVIAI 78 (843)
Q Consensus 2 ~~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w--~~v~ii 78 (843)
+.+|++|| -|..+.........+...++|+|......+.. +.+-.+.+++...+..++++|...|. ++|+++
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i 141 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIF 141 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34677766 34444333444555667799999876543221 12344667777778888888888887 999999
Q ss_pred Eec------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHH
Q 003167 79 FND------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 79 ~~d------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~ 150 (843)
..+ ........+.|.+++++.|..+......... .+...-...+.++.+ .++++|+...+. +..++++
T Consensus 142 ~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~a 217 (304)
T 3gbv_A 142 RKIHEGVIGSNQQESREIGFRQYMQEHHPACNILELNLHA--DLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEY 217 (304)
T ss_dssp EEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEEEEEEEES--SCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHH
T ss_pred EecccCCccchhHHHHHHHHHHHHHhhCCCcEEEEeeecC--CCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHH
Confidence 843 2334567889999999987643222111111 111222333333332 367887766654 6679999
Q ss_pred HHHcCCcccceEEEEeC
Q 003167 151 AQRLGMMDSGYVWIATT 167 (843)
Q Consensus 151 a~~~g~~~~~~~~i~~~ 167 (843)
+++.|+ .+...++-+
T Consensus 218 l~~~g~--~di~vig~d 232 (304)
T 3gbv_A 218 LQQRRK--SDFSLIGYD 232 (304)
T ss_dssp HHHTTC--CSCEEEEES
T ss_pred HHHcCC--CCcEEEEeC
Confidence 999997 344444433
No 112
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=96.44 E-value=0.023 Score=58.33 Aligned_cols=153 Identities=11% Similarity=0.071 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|++||=.........+... ...++|+|......+ .+-.+..++..-+..++++|...|-++++++..+
T Consensus 66 ~~~vdgiIi~~~~~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~ 136 (289)
T 3g85_A 66 ENSFDAAIIANISNYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTE 136 (289)
T ss_dssp TTCCSEEEESSCCHHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECC
T ss_pred ccCCCEEEEecCCcccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3467777743333333333333 468999998765322 2334666777777888888888899999999865
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
.+ ......+.|.+++++.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+.
T Consensus 137 ~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 213 (289)
T 3g85_A 137 SLNDAMDNRNKGFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQIS 213 (289)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCC
Confidence 33 34567889999999999765321111122 2244445556666554 467765 45666777899999999987
Q ss_pred ccceEEEEe
Q 003167 158 DSGYVWIAT 166 (843)
Q Consensus 158 ~~~~~~i~~ 166 (843)
.++.+-|++
T Consensus 214 vP~di~vig 222 (289)
T 3g85_A 214 IPDDIEIVA 222 (289)
T ss_dssp TTTTCEEEE
T ss_pred CCCceEEEE
Confidence 655554443
No 113
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.41 E-value=0.0092 Score=63.14 Aligned_cols=154 Identities=8% Similarity=-0.026 Sum_probs=98.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|++||-.........+...+...++|+|......+. +.+..+..++..-+..+++.|...|.++++++....
T Consensus 118 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 191 (338)
T 3dbi_A 118 LRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSM 191 (338)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 46777764332222345667788889999987553322 112335667777777788888888999999997642
Q ss_pred --CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 --DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
.......+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..
T Consensus 192 ~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~v 268 (338)
T 3dbi_A 192 DSPTSIERLAGYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAV 268 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCC
Confidence 334566889999999999765422222222 223444445555543 45677664 55667778999999999876
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++-+-|+
T Consensus 269 P~di~vv 275 (338)
T 3dbi_A 269 PEQVSVI 275 (338)
T ss_dssp TTTCEEE
T ss_pred CCCeEEE
Confidence 5544444
No 114
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=96.41 E-value=0.008 Score=61.60 Aligned_cols=150 Identities=10% Similarity=0.031 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|.+|| .........+.. .++|+|......+ .+...+ .+..++...+..++++|...|-++++++..+
T Consensus 58 ~~~vdgiI-~~~~~~~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 127 (280)
T 3gyb_A 58 SMRPDGII-IAQDIPDFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVG 127 (280)
T ss_dssp TTCCSEEE-EESCC------------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred hCCCCEEE-ecCCCChhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 35677887 222222222222 8999998765442 112222 3556777777888888888899999999876
Q ss_pred CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 82 DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
........+.|.+++++.|+.+.... +... .+..+-...+.++.+ .++++|+. .+...+..+++.+++.|+..+
T Consensus 128 ~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 203 (280)
T 3gyb_A 128 SGAGLRRFESFEATMRAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVP 203 (280)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTT
T ss_pred CchHHHHHHHHHHHHHHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCC
Confidence 54466678899999999998765432 2222 233444445555443 35677654 556677789999999998755
Q ss_pred ceEEEE
Q 003167 160 GYVWIA 165 (843)
Q Consensus 160 ~~~~i~ 165 (843)
+.+-|+
T Consensus 204 ~di~vv 209 (280)
T 3gyb_A 204 EDLSII 209 (280)
T ss_dssp TTCEEE
T ss_pred CeeEEE
Confidence 444443
No 115
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=96.39 E-value=0.026 Score=57.38 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=96.4
Q ss_pred eEEEEc-CCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc----CCcEEEEEE
Q 003167 5 TLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF----GWGEVIAIF 79 (843)
Q Consensus 5 V~aiiG-p~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~----~w~~v~ii~ 79 (843)
|.+||- |..+.........+.+.++|+|......+. . +.+..+.+++...+..+++++... |-++++++.
T Consensus 60 vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~ 134 (276)
T 3ksm_A 60 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLR 134 (276)
T ss_dssp CSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECB
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEE
Confidence 677764 333334445566677889999987654321 1 223445677777888888888777 899999998
Q ss_pred ec--CCCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHc
Q 003167 80 ND--DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 80 ~d--~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
.+ ........+.|.+++++. |+++.... ... .+..+....+.++.+. ++++|+ +.+...+..+++++++.
T Consensus 135 ~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~ 209 (276)
T 3ksm_A 135 LRAGNASTDQREQGFLDVLRKHDKIRIIAAP--YAG--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQS 209 (276)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEECC--BCC--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHT
T ss_pred cCCCchhHHHHHHHHHHHHHhCCCcEEEEEe--cCC--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHc
Confidence 54 334566788999999998 88876322 222 2344444555555443 456654 34556677789999999
Q ss_pred CCcccceEEEE
Q 003167 155 GMMDSGYVWIA 165 (843)
Q Consensus 155 g~~~~~~~~i~ 165 (843)
|+ ..+...++
T Consensus 210 g~-p~di~vig 219 (276)
T 3ksm_A 210 GM-SKQFGFIG 219 (276)
T ss_dssp TC-TTSSEEEE
T ss_pred CC-CCCeEEEE
Confidence 97 33333443
No 116
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=96.39 E-value=0.022 Score=58.61 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=88.5
Q ss_pred CCeEEEEcCCC-hHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEE-cCCChHHhHHHHHHHHHHc------CCcE
Q 003167 3 TDTLAIVGPQS-AVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQ-TAPNDLYLMSAIAEMVSYF------GWGE 74 (843)
Q Consensus 3 ~~V~aiiGp~~-S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR-~~p~d~~~~~ai~~ll~~~------~w~~ 74 (843)
++|++||.... ..........+.+.++|+|......+. . +++.. +..++...+..+++++... |.++
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~ 131 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKE 131 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccc
Confidence 46777775332 222223344556689999987653321 1 12223 6667777777788877666 8899
Q ss_pred --EEEEEecC--CCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHH
Q 003167 75 --VIAIFNDD--DQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMV 147 (843)
Q Consensus 75 --v~ii~~d~--~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i 147 (843)
++++..+. .......+.|.+++++. |+++..... .. .+..+-...+.++.+ .++++|+. .+...+..+
T Consensus 132 i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~ 206 (290)
T 2fn9_A 132 IPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQS--AE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGA 206 (290)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHH
T ss_pred eeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCEEEEecc--CC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHH
Confidence 66666432 24456788899999998 887653221 11 123333445555443 35777664 556667788
Q ss_pred HHHHHHcCC
Q 003167 148 FDVAQRLGM 156 (843)
Q Consensus 148 ~~~a~~~g~ 156 (843)
++++++.|+
T Consensus 207 ~~al~~~g~ 215 (290)
T 2fn9_A 207 MKACEAAGR 215 (290)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 999999987
No 117
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.39 E-value=0.0021 Score=54.60 Aligned_cols=78 Identities=15% Similarity=0.094 Sum_probs=61.7
Q ss_pred HHHHHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeee
Q 003167 506 FFLVVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 583 (843)
Q Consensus 506 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (843)
.+++.+.+++.+|+..+ +....++.+++||++.++.-.|. -.|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344666777877643 23445789999999999997763 3789999999999999999999999999999888
Q ss_pred eecc
Q 003167 584 TVQQ 587 (843)
Q Consensus 584 t~~~ 587 (843)
+...
T Consensus 94 ~~~~ 97 (103)
T 2k1e_A 94 VRRE 97 (103)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 7644
No 118
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.36 E-value=0.023 Score=58.42 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=91.7
Q ss_pred HHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHHHh
Q 003167 21 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAE 98 (843)
Q Consensus 21 ~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~ 98 (843)
...+.+.++|+|......+ +.. +-.+..++...+..++++|...|-++++++..+.. ......+.|.+++++
T Consensus 82 ~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 82 VRFMTERNMPFVTHGRSDM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRD 155 (288)
T ss_dssp HHHHHHTTCCEEEESCCCS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEECCcCC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHH
Confidence 4456678999998765332 112 23355677777788888888889999999986533 345678899999999
Q ss_pred cCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCcccceEEEE
Q 003167 99 IRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 165 (843)
Q Consensus 99 ~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~ 165 (843)
.|+.+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++.+++.|+..++-+-|+
T Consensus 156 ~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 156 FGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp TTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred cCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99876543223222 3344555666666554 466765 4556677789999999998765544444
No 119
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=96.36 E-value=0.013 Score=63.99 Aligned_cols=103 Identities=11% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHhhhCCCeEEEE-eCchHHHHHH---HhhCCCC---cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCe-E
Q 003167 596 DTLMTSNDRVGYQ-VGSFAENYLI---EELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQF-S 667 (843)
Q Consensus 596 ~dL~~~~~~i~~~-~~~~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l-~ 667 (843)
+||. |++||+. .++....++. +..+++. .+++.+ ...+...+|.+|++|+++...++......+.... .
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~ 227 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQA 227 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEE
Confidence 6774 8999998 4665433332 3446653 356666 4578999999999999998888876665554322 2
Q ss_pred E-eCCccccCc-ceeeecCC----CC-----chHHHHHHHHhhhc
Q 003167 668 V-RGQEFTKSG-WGFAFPRD----SP-----LAIDMSTAILTLSE 701 (843)
Q Consensus 668 ~-~~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e 701 (843)
. ..+.....+ ..++++++ .| +...+.++...+.+
T Consensus 228 ~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 228 LTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2 223222222 46677654 44 44455566666665
No 120
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.34 E-value=0.015 Score=59.91 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=94.7
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|++||-......... ...+...++|+|......+ + +.+..+..++..-+..++++|...|.++++++..+.
T Consensus 71 ~~vdgiIi~~~~~~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEH-VAEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp TTCSEEEECCSCCCHHH-HHHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCT
T ss_pred CCCCEEEEecCCCCHHH-HHHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 46777764222111222 2334568999998755332 1 122345567777777888888888999999998653
Q ss_pred -C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 83 -D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 83 -~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
+ ......+.|.+++++.|+.+.....+... .+..+-...+.++.+. ++++|+. .+...+..+++++++.|+.
T Consensus 144 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~ 220 (289)
T 2fep_A 144 AEPINRSKKLQGYKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLS 220 (289)
T ss_dssp TSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCC
T ss_pred cccccHHHHHHHHHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCC
Confidence 2 35677889999999999765321111111 1234444556665543 5677664 5566677889999999986
Q ss_pred ccceEEEE
Q 003167 158 DSGYVWIA 165 (843)
Q Consensus 158 ~~~~~~i~ 165 (843)
.++-+-|+
T Consensus 221 vP~di~vv 228 (289)
T 2fep_A 221 IPEDLDII 228 (289)
T ss_dssp TTTTCEEE
T ss_pred CCCCeEEE
Confidence 54444333
No 121
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=96.34 E-value=0.048 Score=56.22 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=95.7
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|++||=...... ......+...++|+|......+... .. +..+..++..-+..+++.|...|-++++++....
T Consensus 67 ~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 141 (295)
T 3hcw_A 67 RMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPTSDID-HQ---FTHIDNDNILASENLTRHVIEQGVDELIFITEKG 141 (295)
T ss_dssp TCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-GG---SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESS
T ss_pred CCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCCcccc-CC---ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCc
Confidence 46777663222111 2334556678999998754332110 01 2334556666777788888888999999998653
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-----CCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
. ......+.|.+++++.|+.+.... ... +..+....+.++.+ ..+++|+ +.+...+..+++++++.|
T Consensus 142 ~~~~~~~R~~Gf~~al~~~g~~~~~~~-~~~----~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g 215 (295)
T 3hcw_A 142 NFEVSKDRIQGFETVASQFNLDYQIIE-TSN----EREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELN 215 (295)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEE-ECS----CHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHcCCCeeEEe-ccC----CHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcC
Confidence 3 345678899999999998876221 122 23444444444433 2577765 466667888999999999
Q ss_pred CcccceEEEEe
Q 003167 156 MMDSGYVWIAT 166 (843)
Q Consensus 156 ~~~~~~~~i~~ 166 (843)
+..++-+-|++
T Consensus 216 ~~vP~di~vig 226 (295)
T 3hcw_A 216 IEIPKDVMTAT 226 (295)
T ss_dssp CCTTTTEEEEE
T ss_pred CCCCCceEEEE
Confidence 87665554443
No 122
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=96.30 E-value=0.047 Score=57.90 Aligned_cols=159 Identities=9% Similarity=0.011 Sum_probs=97.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC-------CCCC-ceEEcCCChHHhHHHHHHHHHHcC---
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP-------LQYP-FFVQTAPNDLYLMSAIAEMVSYFG--- 71 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~-------~~~p-~~fR~~p~d~~~~~ai~~ll~~~~--- 71 (843)
++|.+||-.........+...+...++|+|......+.... ..|+ ++-.+.+++...+..+++.|...+
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~ 140 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPV 140 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhh
Confidence 46776664333334555667788899999998765543321 1122 256677778778888888876665
Q ss_pred ---C-cEEEEEEecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhh
Q 003167 72 ---W-GEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRT 143 (843)
Q Consensus 72 ---w-~~v~ii~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~ 143 (843)
- ++++++..+. .......+.|.+++++.|. +.....+... .+.......+.++.+. ++++| ++++...
T Consensus 141 ~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~ 216 (350)
T 3h75_A 141 PAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGE--WNRERAYRQAQQLLKRYPKTQLV-WSANDEM 216 (350)
T ss_dssp CSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEE-EESSHHH
T ss_pred cCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCC--CcHHHHHHHHHHHHHhCCCcCEE-EECChHH
Confidence 4 8999998543 2345568899999999986 2222222222 2244444455555443 34554 3455667
Q ss_pred HHHHHHHHHHcCCcccceEEEE
Q 003167 144 GLMVFDVAQRLGMMDSGYVWIA 165 (843)
Q Consensus 144 ~~~i~~~a~~~g~~~~~~~~i~ 165 (843)
+..+++++++.|+..++.+-|+
T Consensus 217 a~g~~~al~~~G~~vP~di~vv 238 (350)
T 3h75_A 217 ALGAMQAARELGRKPGTDLLFS 238 (350)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHHcCCCCCCCeEEE
Confidence 7789999999998755444444
No 123
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=96.22 E-value=0.052 Score=55.51 Aligned_cols=151 Identities=12% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc-C-CcEEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF-G-WGEVIAIF 79 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~-~-w~~v~ii~ 79 (843)
.+|++|| .|..+.........+...++|+|......+ +. +.+..+..++...+..++++|... | -++++++.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~ 130 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELE 130 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 4677765 344333222333445678999998754321 11 122334556666677777877665 5 89999998
Q ss_pred ecCC--CCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHc
Q 003167 80 NDDD--QGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 80 ~d~~--~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
.... ......+.|.+++++. |+++..... .. .+..+-...++++.+. .+++| ++.+...+..+++++++.
T Consensus 131 g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~ 205 (283)
T 2ioy_A 131 GIPGASAARDRGKGFDEAIAKYPDIKIVAKQA--AD--FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAA 205 (283)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHHHhCCCCEEEeecc--CC--CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHC
Confidence 6432 2345678899999988 887654222 11 1234444445555443 45665 445566778889999999
Q ss_pred CCcccceEEEE
Q 003167 155 GMMDSGYVWIA 165 (843)
Q Consensus 155 g~~~~~~~~i~ 165 (843)
|+ .+...++
T Consensus 206 G~--~di~viG 214 (283)
T 2ioy_A 206 NR--QGIIVVG 214 (283)
T ss_dssp TC--CCCEEEE
T ss_pred CC--CCcEEEE
Confidence 97 3434443
No 124
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=96.18 E-value=0.026 Score=57.76 Aligned_cols=99 Identities=14% Similarity=-0.065 Sum_probs=57.9
Q ss_pred HHhhhCCCeEEEE-eCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcCh-hhHHHHHhcCCCeEEeCC--
Q 003167 596 DTLMTSNDRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER-PYIDLFLSDHCQFSVRGQ-- 671 (843)
Q Consensus 596 ~dL~~~~~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~-~~~~~~~~~~~~l~~~~~-- 671 (843)
+||. |++||+. .++....+++..+ ...+++. .+..+...++.+|++||++... +... +... ++..+.+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l--~~~~~~~-~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~--g~~~~~~~~ 170 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAV--EDFEPVE-MPFDRIIQAVLDEEVDAGLLIHEGQIT-YADY--GLKCVLDLW 170 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHC--SSCEEEE-CCGGGHHHHHHTTSSSEEEECSGGGGT-GGGG--TCEEEEEHH
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHh--ccCceEe-cCHHHHHHHHHcCCCCEEEEechHHhH-HHhc--CCeEeccHH
Confidence 6774 8999996 4554443343222 2234443 3667899999999999988543 4444 2222 2222211
Q ss_pred -c----c-ccCc-ceeeecCC-CC-chHHHHHHHHhhhcc
Q 003167 672 -E----F-TKSG-WGFAFPRD-SP-LAIDMSTAILTLSEN 702 (843)
Q Consensus 672 -~----~-~~~~-~~~~~~k~-sp-l~~~in~~i~~l~e~ 702 (843)
. . .+.+ .+++++++ .| +...|.+++.+..+.
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 171 DWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 0 0 1112 35778888 56 778888888776554
No 125
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=96.10 E-value=0.015 Score=60.28 Aligned_cols=147 Identities=8% Similarity=-0.060 Sum_probs=93.5
Q ss_pred CeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcC-----CcEEEE
Q 003167 4 DTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG-----WGEVIA 77 (843)
Q Consensus 4 ~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~-----w~~v~i 77 (843)
+|++|| .|..+.........+. .++|+|......+.......+.+..+.+++...+..++++|...| -++|++
T Consensus 63 ~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~ 141 (304)
T 3o1i_D 63 GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIAL 141 (304)
T ss_dssp TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 566666 4444432222334455 899999875544322122234566777888888888888888888 889999
Q ss_pred EEecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHH-hcCCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 78 IFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RMMEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 78 i~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-~~~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
+.... .......+.|.+++++.|+++.... ... .+.......+.++ +..++++ + +++...+..+++++++.
T Consensus 142 i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~ 215 (304)
T 3o1i_D 142 LLGPRTRGGTKPVTTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSA 215 (304)
T ss_dssp ECCCC-----CHHHHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTT
T ss_pred EECCCCcchHHHHHHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhc
Confidence 97543 3456678999999999998876533 222 2233333334433 3356788 4 45667788899999998
Q ss_pred CCc
Q 003167 155 GMM 157 (843)
Q Consensus 155 g~~ 157 (843)
|+.
T Consensus 216 g~~ 218 (304)
T 3o1i_D 216 DKT 218 (304)
T ss_dssp TCG
T ss_pred CCC
Confidence 875
No 126
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.07 E-value=0.0071 Score=53.08 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=59.3
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcc--cccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeec
Q 003167 509 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 586 (843)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 586 (843)
+.+.+++.+|+..+ ++...++.+++|+++.++.--| .-.|.+..+|++.++|.++++.+.+..++.+++.++..
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777776442 3344579999999999999776 33789999999999999999999999999999887653
No 127
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=96.05 E-value=0.074 Score=54.97 Aligned_cols=156 Identities=14% Similarity=0.032 Sum_probs=96.6
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc--CCcEEEEEE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~~v~ii~ 79 (843)
.+|.+|| -|..+.........+.+.++|+|......+. . +.+..+.+++...+..+++++... |-++++++.
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~ 134 (305)
T 3g1w_A 60 KNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVIT 134 (305)
T ss_dssp HCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3566666 3444433334455566789999987654332 1 123445677777888888888777 999999998
Q ss_pred ecCC-CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 80 NDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 80 ~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
.... ......+.|.+++++.|..+.....+... .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+
T Consensus 135 ~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 135 LPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHHHHHHHHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCC
Confidence 6432 23456788999999887655433322222 2244444555555443 455554 4556677889999999998
Q ss_pred cccceEEEEeC
Q 003167 157 MDSGYVWIATT 167 (843)
Q Consensus 157 ~~~~~~~i~~~ 167 (843)
. .+...++.+
T Consensus 212 ~-~di~vig~d 221 (305)
T 3g1w_A 212 A-GEIQIISFD 221 (305)
T ss_dssp T-TTSEEEEES
T ss_pred C-CCeEEEEeC
Confidence 6 444444443
No 128
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=96.04 E-value=0.017 Score=58.78 Aligned_cols=151 Identities=9% Similarity=-0.029 Sum_probs=95.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|.+||-.............+.+.++|+|......+. .. +-.+..++...+..++++|...|-++++++..+.
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 130 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDP---AH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARP 130 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCT---TT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECT
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCc---cc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 45666663222211233345566789999987553321 12 3345567777777888888888999999998754
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--C-CCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--M-EARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~-~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
+ ......+.|.+++++.|+.+.....-.. +..+....+.++.+ . .+++|+. .+...+..+++.+++.|+
T Consensus 131 ~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~- 204 (272)
T 3o74_A 131 ELSVSQARAGGFDEALQGYTGEVRRYQGEAF----SRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPV- 204 (272)
T ss_dssp TSHHHHHHHHHHHHHTTTCCSEEEEEEESSS----SHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCG-
T ss_pred CCccHHHHHHHHHHHHHHcCCChheeecCCC----CHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCC-
Confidence 3 3456788999999999987654332222 24444444555433 2 4777655 556677789999999997
Q ss_pred ccceEEEE
Q 003167 158 DSGYVWIA 165 (843)
Q Consensus 158 ~~~~~~i~ 165 (843)
.++-+-|+
T Consensus 205 vp~di~vv 212 (272)
T 3o74_A 205 DSRQLQLG 212 (272)
T ss_dssp GGCCCEEE
T ss_pred CccceEEE
Confidence 44434333
No 129
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=95.96 E-value=0.059 Score=55.31 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
+.+|++||-.........+ ..+.. ++|+|......+ + +.+-.+..++..-+..++++|...|-++|+++...
T Consensus 64 ~~~vdgiIi~~~~~~~~~~-~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDEL-GALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGA 135 (289)
T ss_dssp TTTEEEEEEETCCCCHHHH-HHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCT
T ss_pred hCCCCEEEEECCCCCHHHH-HHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 4578887733222222333 33445 999998765332 1 22344566777777788888888899999999875
Q ss_pred CC-CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 82 DD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 82 ~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
.. ......+.|.+++++.|+.+... .+... .+..+-...+.++.+ .++++|+ +.+...+..+++.+++.|+..
T Consensus 136 ~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~v 211 (289)
T 3k9c_A 136 DAPGGADRRAGFLAAMDRHGLSASAT-VVTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDV 211 (289)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCGGGEE-EECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCcc-EEECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCC
Confidence 43 34566889999999999864322 22222 234444455666554 3567765 455667778999999999876
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++-+-|+
T Consensus 212 P~di~vi 218 (289)
T 3k9c_A 212 PADISVV 218 (289)
T ss_dssp TTTCEEE
T ss_pred CCceEEE
Confidence 5545444
No 130
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=95.90 E-value=0.075 Score=54.53 Aligned_cols=145 Identities=8% Similarity=0.019 Sum_probs=93.2
Q ss_pred CCeEEEEc-CCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH-c-CCc-----E
Q 003167 3 TDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-F-GWG-----E 74 (843)
Q Consensus 3 ~~V~aiiG-p~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~-~-~w~-----~ 74 (843)
.+|.+||- |............+.+.++|+|......+. .+.+..+..++...+..+++++.. + |-+ +
T Consensus 63 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~ 137 (293)
T 3l6u_A 63 LKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGR 137 (293)
T ss_dssp TTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCce
Confidence 35666653 333333334455666789999987654432 123445667777777888887766 5 766 9
Q ss_pred EEEEEecC--CCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeEEEEEcChhhHHHHHH
Q 003167 75 VIAIFNDD--DQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMM--EARVIVVHGYSRTGLMVFD 149 (843)
Q Consensus 75 v~ii~~d~--~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~viv~~~~~~~~~~i~~ 149 (843)
++++.... .......+.|.+++++. |+++.....-. .+..+....+.++.+. ++++|+ +.+...+..+++
T Consensus 138 i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~ 212 (293)
T 3l6u_A 138 IVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLE 212 (293)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHH
Confidence 99998533 34456788999999999 98876543222 2244445555555543 456654 456666778999
Q ss_pred HHHHcCCc
Q 003167 150 VAQRLGMM 157 (843)
Q Consensus 150 ~a~~~g~~ 157 (843)
.+++.|+.
T Consensus 213 al~~~g~~ 220 (293)
T 3l6u_A 213 ALKKAKIS 220 (293)
T ss_dssp HHHHTTCC
T ss_pred HHHhCCCC
Confidence 99999975
No 131
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.90 E-value=0.014 Score=60.22 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|.+||-..... .......+.+.++|+|......+. +.+..+..++...+..++++|...|-++++++....
T Consensus 63 ~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~ 135 (291)
T 3egc_A 63 RRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSA 135 (291)
T ss_dssp TTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCT
T ss_pred CCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 4677776332222 334455677889999987654331 223445667777788888888888999999998653
Q ss_pred --CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 --DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 --~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
.......+.|.+++++.|+.+......... .+..+....+.++.+ .++++|+ +.+...+..+++.+++.|+..
T Consensus 136 ~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 212 (291)
T 3egc_A 136 GLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRY 212 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCB
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCC
Confidence 244567888999999998764321111111 111122233444432 4577766 466667778999999999875
Q ss_pred cceEEEE
Q 003167 159 SGYVWIA 165 (843)
Q Consensus 159 ~~~~~i~ 165 (843)
++-+-|+
T Consensus 213 P~di~vv 219 (291)
T 3egc_A 213 GPDVEIV 219 (291)
T ss_dssp TTTBEEE
T ss_pred CCceEEE
Confidence 5544444
No 132
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=95.87 E-value=0.0098 Score=62.71 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=91.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
++|++|| ....... +.+...++|+|......+. ..+ .+..++...+..++++|...|.++|++|..+.
T Consensus 115 ~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 182 (330)
T 3ctp_A 115 HRVAGII-ASRSQCE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPE 182 (330)
T ss_dssp TTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCT
T ss_pred CCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 4677887 3322111 3355789999987654321 222 34556666667788888788999999998753
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
. .+....+.|.+++++.|+.+. ...+... .+..+-...+.++.+ .++++|++ .+...+..+++++++.|+..+
T Consensus 183 ~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP 258 (330)
T 3ctp_A 183 VFEATELRYKGFLDGARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIP 258 (330)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred cCccHHHHHHHHHHHHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 3 355678899999999998765 3222222 112211222333333 36788765 455667778999999998765
Q ss_pred ceEEEE
Q 003167 160 GYVWIA 165 (843)
Q Consensus 160 ~~~~i~ 165 (843)
+-+-|.
T Consensus 259 ~disvv 264 (330)
T 3ctp_A 259 QEVQII 264 (330)
T ss_dssp TTCEEE
T ss_pred CCeEEE
Confidence 544444
No 133
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.87 E-value=0.041 Score=58.09 Aligned_cols=152 Identities=10% Similarity=0.044 Sum_probs=93.0
Q ss_pred CCeEEEEc--CCChHHHHHHHHhcc-cCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEE
Q 003167 3 TDTLAIVG--PQSAVMAHVLSHLAN-ELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiG--p~~S~~~~av~~~~~-~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~ 79 (843)
.+|++||- ...+. ...+.+. ..++|+|......+. . ++...+..++..-+..++++|...|.+++++|.
T Consensus 113 ~~vdgiI~~~~~~~~---~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~ 184 (340)
T 1qpz_A 113 KRVDGLLVMCSEYPE---PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIP 184 (340)
T ss_dssp TTCSEEEECCSCCCH---HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred CCCCEEEEeCCCCCh---HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 46777773 22222 1223333 368999987653321 1 222345566666677788888778999999997
Q ss_pred ecCC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 NDDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
...+ .+....+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|++ .+...+..+++++++.|
T Consensus 185 g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G 261 (340)
T 1qpz_A 185 GPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMG 261 (340)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CCCccccHHHHHHHHHHHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcC
Confidence 6432 34566889999999999765322122211 123333445555554 35777665 45666778899999999
Q ss_pred CcccceEEEE
Q 003167 156 MMDSGYVWIA 165 (843)
Q Consensus 156 ~~~~~~~~i~ 165 (843)
+..++-+-|+
T Consensus 262 ~~vP~disvi 271 (340)
T 1qpz_A 262 LRVPQDVSLI 271 (340)
T ss_dssp CCTTTTCEEE
T ss_pred CCCCCCeEEE
Confidence 8755544444
No 134
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=95.83 E-value=0.032 Score=57.77 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=93.0
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHH-HcCCc-----EE
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWG-----EV 75 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~-~~~w~-----~v 75 (843)
.+|++|| -|..+.........+.+.++|+|......+.......+.+..+..++...+..++++|. ..|-+ ++
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i 135 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKES 135 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGE
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccce
Confidence 4566665 44444444555566777899999876433222111111233455566666666666553 33433 88
Q ss_pred EEEE-ecC--CCCcchHHHHHHHHHhcCc---EEEEeeecCCCCCCChhHHHHHHHHHhcC--CCeE-EEEEcChhhHHH
Q 003167 76 IAIF-NDD--DQGRNGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMM--EARV-IVVHGYSRTGLM 146 (843)
Q Consensus 76 ~ii~-~d~--~~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~i~~~--~~~v-iv~~~~~~~~~~ 146 (843)
+++. ... .......+.|.+++++.|. ++..... .. .+..+-...+.++.+. ++++ +|++++...+..
T Consensus 136 ~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g 211 (306)
T 8abp_A 136 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT--KS--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 211 (306)
T ss_dssp EEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC--SS--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHH
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHhcCCCCcEEEeecc--CC--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHH
Confidence 8886 322 3345668889999999874 2433222 11 2244455556666554 4556 455667777888
Q ss_pred HHHHHHHcCCcccceEEEE
Q 003167 147 VFDVAQRLGMMDSGYVWIA 165 (843)
Q Consensus 147 i~~~a~~~g~~~~~~~~i~ 165 (843)
+++++++.|+.. +.+-|.
T Consensus 212 ~~~al~~~g~~v-~di~vv 229 (306)
T 8abp_A 212 GVRATEGQGFKA-ADIIGI 229 (306)
T ss_dssp HHHHHHHTTCCG-GGEEEE
T ss_pred HHHHHHHcCCCC-CceEEE
Confidence 999999999865 444444
No 135
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=95.81 E-value=0.072 Score=55.16 Aligned_cols=156 Identities=7% Similarity=0.023 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCh-HHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcC---CcEEEEE
Q 003167 3 TDTLAIVGPQSA-VMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFG---WGEVIAI 78 (843)
Q Consensus 3 ~~V~aiiGp~~S-~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~---w~~v~ii 78 (843)
.+|++||-...+ .........+...++|+|......+... ..+++..+..++...+..+++.|...| -++|+++
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i 134 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 134 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 357777643332 2112333445668999998765332111 001344566677777777888776665 7899999
Q ss_pred EecC--CCCcchHHHHHHHHHhcCc-EEEEeeecCCCCCCChhHHHHHHHHHhc-----CCCeEEEEEcChhhHHHHHHH
Q 003167 79 FNDD--DQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM-----MEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 79 ~~d~--~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~~~~~~~~i~~~ 150 (843)
.... .......+.|.+++++.|. ++.... ... .+..+-...+.++.+ .++++|++ .+...+..++++
T Consensus 135 ~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~a 209 (306)
T 2vk2_A 135 QGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQ--SGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQA 209 (306)
T ss_dssp ECSTTCHHHHHHHHHHHHHTTTCTTEEEEEEE--ECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHH
T ss_pred EcCCCChhHHHHHHHHHHHHhhCCCeEEEEec--cCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHH
Confidence 8643 2345667889999999885 333211 111 123333344444433 35777655 456667789999
Q ss_pred HHHcCCcccceEEEE
Q 003167 151 AQRLGMMDSGYVWIA 165 (843)
Q Consensus 151 a~~~g~~~~~~~~i~ 165 (843)
+++.|+..++-+-|+
T Consensus 210 l~~~G~~vP~di~vi 224 (306)
T 2vk2_A 210 IKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHTTCCBTTTBEEE
T ss_pred HHHcCCCCCCCeEEE
Confidence 999998655444443
No 136
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.65 E-value=0.022 Score=51.30 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=56.8
Q ss_pred HHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 510 VGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
.+.+++.+++.. .+....++.+++||++.++.--|. -.|.+..+|++.++|.++++.+.+...+.+.+.+..
T Consensus 22 ~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 22 GSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666543 223345689999999999987763 478999999999999999999999999999987744
No 137
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.63 E-value=0.036 Score=57.13 Aligned_cols=152 Identities=9% Similarity=0.018 Sum_probs=95.1
Q ss_pred CCeEEEEc-CCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVG-PQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiG-p~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
.+|++||= |..... .....+...++|+|......+ ... +-.+..++..-+..++++|...|-++++++...
T Consensus 64 ~~vdGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~ 135 (294)
T 3qk7_A 64 RRVDALIVAHTQPED--FRLQYLQKQNFPFLALGRSHL---PKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTD 135 (294)
T ss_dssp TCCSEEEECSCCSSC--HHHHHHHHTTCCEEEESCCCC---SSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCCCEEEEeCCCCCh--HHHHHHHhCCCCEEEECCCCC---CCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCC
Confidence 35666662 222221 334556778999998765421 122 334566777777788888888899999999875
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
.. ......+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +++...+..+++++++.|+.
T Consensus 136 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 136 ARISYVDQRLQGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCS
T ss_pred cccchHHHHHHHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCC
Confidence 43 34566889999999998764321111111 123344444555544 3567765 45667778899999999987
Q ss_pred ccceEEEE
Q 003167 158 DSGYVWIA 165 (843)
Q Consensus 158 ~~~~~~i~ 165 (843)
.++-+-|+
T Consensus 213 vP~di~vi 220 (294)
T 3qk7_A 213 GGEGISLI 220 (294)
T ss_dssp STTSCEEE
T ss_pred CCCceEEE
Confidence 65544444
No 138
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=95.61 E-value=0.16 Score=52.31 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC----C--CCCceEEcCCChHHhHHHHHHHHHHc--CCc
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP----L--QYPFFVQTAPNDLYLMSAIAEMVSYF--GWG 73 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~----~--~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~ 73 (843)
+++|++||...+ .....+... ..++|+|..+..+|.... . ...++..+. +..-+...++++... |-+
T Consensus 60 ~~~vDgII~~~~-~~~~~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~ 134 (295)
T 3lft_A 60 ANGNDLVVGIAT-PAAQGLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVK 134 (295)
T ss_dssp TSSCSEEEEESH-HHHHHHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCC
T ss_pred hcCCCEEEECCc-HHHHHHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCc
Confidence 457888886543 223333332 478999987655543221 0 112343333 333356667777776 999
Q ss_pred EEEEEEecCCC-CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHH
Q 003167 74 EVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 74 ~v~ii~~d~~~-g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~ 152 (843)
++++|+.+.+. ++...+.+++++++.|+++...... . ..+....++++. .++++|++..+ ..+...++.+.
T Consensus 135 ~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~--~----~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~ 206 (295)
T 3lft_A 135 TIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP--S----TNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVV 206 (295)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES--S----GGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHH
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC--C----HHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHH
Confidence 99999986542 4566889999999999988754332 2 446677777776 47898877554 44555667777
Q ss_pred HcCC
Q 003167 153 RLGM 156 (843)
Q Consensus 153 ~~g~ 156 (843)
+.|.
T Consensus 207 ~~~~ 210 (295)
T 3lft_A 207 SSNQ 210 (295)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7664
No 139
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.61 E-value=0.019 Score=52.56 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=60.4
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeec
Q 003167 509 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 586 (843)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 586 (843)
+.+.+++.+|+..+ ++...++.+++||++.++.--|. -.|.+..+|++.++|.++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777776542 23345799999999999997763 3788999999999999999999999999999988765
Q ss_pred cc
Q 003167 587 QL 588 (843)
Q Consensus 587 ~~ 588 (843)
..
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 140
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=95.60 E-value=0.2 Score=50.60 Aligned_cols=145 Identities=10% Similarity=0.116 Sum_probs=85.9
Q ss_pred CCCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHc--CCcEEEEE
Q 003167 2 ETDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGEVIAI 78 (843)
Q Consensus 2 ~~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~~v~ii 78 (843)
+.+|++|| -|..+.........+...++|+|......+ ... ..-.+..++..-+..++++|... |-++++++
T Consensus 55 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~~---~~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i 129 (271)
T 2dri_A 55 VRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQAT---KGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIEL 129 (271)
T ss_dssp TTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS---SSC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCCC---CCc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 45788876 333332222233445567999998754322 111 11234456666666677777655 56899999
Q ss_pred EecCC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 79 FNDDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 79 ~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
..... ......+.|.+++++.|+.+..... .. .+...-...+.++.+ ..+++|+ +.+...+..+++++++.
T Consensus 130 ~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~ 204 (271)
T 2dri_A 130 QGIAGTSAARERGEGFQQAVAAHKFNVLASQP--AD--FDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTA 204 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHH
T ss_pred ECCCCCccHhHHHHHHHHHHhcCCCEEEEecC--CC--CCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHc
Confidence 85432 2345678899999999987654321 11 123333334444433 3466644 45666778899999999
Q ss_pred CC
Q 003167 155 GM 156 (843)
Q Consensus 155 g~ 156 (843)
|+
T Consensus 205 g~ 206 (271)
T 2dri_A 205 GK 206 (271)
T ss_dssp TC
T ss_pred CC
Confidence 97
No 141
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.59 E-value=0.031 Score=59.20 Aligned_cols=152 Identities=9% Similarity=0.024 Sum_probs=95.5
Q ss_pred CCeEEEE--cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aii--Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
.+|++|| +...+. .....+...++|+|......+ .+....+..++..-+..++++|...|-++++++..
T Consensus 123 ~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 193 (344)
T 3kjx_A 123 WRPSGVIIAGLEHSE---AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGT 193 (344)
T ss_dssp TCCSEEEEECSCCCH---HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEES
T ss_pred CCCCEEEEECCCCCH---HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3555555 333232 344556778999998743211 12233456677777778888888889999999986
Q ss_pred cC---CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 81 DD---DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 81 d~---~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.. .......+.|.+++++.|+.+.....+... .+..+-...+.++.+ .++++|+ +.+...+..+++.+++.|
T Consensus 194 ~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g 270 (344)
T 3kjx_A 194 KMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQG 270 (344)
T ss_dssp STTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred CcccCccHHHHHHHHHHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcC
Confidence 53 234566889999999999875533333222 223333344444433 3677766 456677888999999999
Q ss_pred CcccceEEEEe
Q 003167 156 MMDSGYVWIAT 166 (843)
Q Consensus 156 ~~~~~~~~i~~ 166 (843)
+..++-+-|++
T Consensus 271 ~~vP~disvvg 281 (344)
T 3kjx_A 271 IDIPGQIGLAG 281 (344)
T ss_dssp CCTTTTCEEEC
T ss_pred CCCCCceEEEE
Confidence 87655555543
No 142
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=95.54 E-value=0.074 Score=54.11 Aligned_cols=150 Identities=9% Similarity=0.023 Sum_probs=93.5
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|.+||=..... ......+.+.++|+|......+ +... -.+..++..-+..+++.|...|-++++++..+.
T Consensus 62 ~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~~~---~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~ 133 (276)
T 3jy6_A 62 RGFDGLILQSFSN--PQTVQEILHQQMPVVSVDREMD---ACPW---PQVVTDNFEAAKAATTAFRQQGYQHVVVLTSEL 133 (276)
T ss_dssp TTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCCCT---TCSS---CEEECCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred CCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecccC---CCCC---CEEEEChHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 4666666333222 4445566778999998755332 1122 235567777778888888888999999999755
Q ss_pred C-C--CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 83 D-Q--GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 83 ~-~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
. + .....+.|.+++++.+. +. +...............+.++. .++++|+ +.+...+..+++.+++.|+..
T Consensus 134 ~~~~~~~~R~~gf~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~v 207 (276)
T 3jy6_A 134 ELSRTRQERYRGILAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLID 207 (276)
T ss_dssp TTCHHHHHHHHHHHTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCC
T ss_pred CCCchHHHHHHHHHHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCC
Confidence 3 2 24567788888887754 22 111100112334444445543 4566665 456677778999999999876
Q ss_pred cceEEEEe
Q 003167 159 SGYVWIAT 166 (843)
Q Consensus 159 ~~~~~i~~ 166 (843)
++-+-|++
T Consensus 208 P~di~vig 215 (276)
T 3jy6_A 208 NQTVTATG 215 (276)
T ss_dssp SSSEEEEE
T ss_pred CCcEEEEE
Confidence 66555554
No 143
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=95.41 E-value=0.051 Score=56.29 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCeEEEEcCCChHHHH-HHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAH-VLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~-av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
.+|.+||=........ .+..+. + ++|+|......+. ..+ .+..++..-+..+++.|...|-++++++...
T Consensus 70 ~~vdgiI~~~~~~~~~~~~~~l~-~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 140 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVL-E-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGT 140 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHH-T-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCCcEEEEecCCCCcHHHHHHHh-C-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4677766332222222 334444 4 9999987654432 222 3456666677778888888899999999864
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHH-----hc--CCCeEEEEEcChhhHHHHHHHHH
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-----RM--MEARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-----~~--~~~~viv~~~~~~~~~~i~~~a~ 152 (843)
.. ......+.|.+++++.|+.+......... .+..+-...+.++ .+ ..+++|+. .+...+..++++++
T Consensus 141 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~ 217 (303)
T 3kke_A 141 AIHDTAQRRKEGYLETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTAL 217 (303)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHH
Confidence 33 34567889999999999765321111111 2234444556666 44 35677654 55667778999999
Q ss_pred HcCCcccceEEEE
Q 003167 153 RLGMMDSGYVWIA 165 (843)
Q Consensus 153 ~~g~~~~~~~~i~ 165 (843)
+.|+..++-+-|+
T Consensus 218 ~~G~~vP~di~vi 230 (303)
T 3kke_A 218 RLGLRVPEDLSIV 230 (303)
T ss_dssp HTTCCTTTTCEEE
T ss_pred HcCCCCCCceEEE
Confidence 9998755444333
No 144
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=95.30 E-value=0.088 Score=55.74 Aligned_cols=151 Identities=12% Similarity=0.030 Sum_probs=89.4
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|++||-....... .....+...++|+|......+. ....+ .+..++..-+..++++|...|.++|++|..+.
T Consensus 121 ~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~ 194 (348)
T 3bil_A 121 HGVDGIICVPNEECA-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPM 194 (348)
T ss_dssp TTCSCEEECCCGGGH-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCT
T ss_pred CCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCC
Confidence 456776643332222 2334455679999987553321 01222 34455666667788888788999999998643
Q ss_pred C--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCC-CeEEEEEcChhhHHHHHHHHHHcCCccc
Q 003167 83 D--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDS 159 (843)
Q Consensus 83 ~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~~~~~~~i~~~a~~~g~~~~ 159 (843)
. ......+.|.+++++.|+..... +... .+..+-...+.++.+.. + .|++.+...+..+++++++.|+..+
T Consensus 195 ~~~~~~~R~~Gf~~al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP 268 (348)
T 3bil_A 195 DTSTGRERLEDFKAACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIG 268 (348)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBT
T ss_pred CCccHHHHHHHHHHHHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCC
Confidence 2 34566888999999998732211 1111 12333344455554433 5 4445677778889999999998755
Q ss_pred ceEEEE
Q 003167 160 GYVWIA 165 (843)
Q Consensus 160 ~~~~i~ 165 (843)
+-+-|+
T Consensus 269 ~disvv 274 (348)
T 3bil_A 269 KDVSVI 274 (348)
T ss_dssp TTBEEE
T ss_pred CCeEEE
Confidence 544444
No 145
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=95.22 E-value=0.24 Score=48.75 Aligned_cols=188 Identities=10% Similarity=0.072 Sum_probs=111.5
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .+. ..+...++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--YAM------------QTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--HHH------------HHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--HHH------------HHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4679999974 111 2345678888888764 25566655 557899999999999999874
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
... ....+. ..++....+++++++..+..
T Consensus 76 ~~~---~~~~~~-~~~l~~~~~~~v~~~~hpl~----------------------------------------------- 104 (241)
T 3oxn_A 76 PTG---PVEPLR-SEILGRVGVLCLLSKQHPLA----------------------------------------------- 104 (241)
T ss_dssp CSS---CCTTEE-EEEEECCCEEEEEETTSGGG-----------------------------------------------
T ss_pred CCC---CCccce-eEEeecccEEEEEeCCCCcc-----------------------------------------------
Confidence 322 222222 46677888898888765210
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEE-EEeCch
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVG-YQVGSF 612 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~-~~~~~~ 612 (843)
...-+++||. +.++. +..+..
T Consensus 105 --------------------------------------------------------~~~i~~~dL~--~~~~i~~~~~~~ 126 (241)
T 3oxn_A 105 --------------------------------------------------------NQEMSLDDYL--SHPHAMIAISDG 126 (241)
T ss_dssp --------------------------------------------------------GSCCCHHHHH--TSEEEECSCCHH
T ss_pred --------------------------------------------------------cCCCCHHHHh--cCCeEEEecCCC
Confidence 1334788996 55543 334443
Q ss_pred HHHHHHHhhC--CCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC--CccccCcceeeecCCCCc
Q 003167 613 AENYLIEELS--IPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSPL 688 (843)
Q Consensus 613 ~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~spl 688 (843)
....+.+.+. ........+++.+...+.+..|...+++.+.....+ ... .++..+. .......++++.+++.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~giailp~~~~~~~-~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~ 204 (241)
T 3oxn_A 127 VKALIEQALIDKPQRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLV-AER-YDLVVKPLPFQFTPFDYSMIWHARCEH 204 (241)
T ss_dssp HHHHHHHHSTTSCCCEEEEECSSTHHHHHHC--CCCEEEEEHHHHHHH-HHH-TTEEEECCSSCCCCCCEEEEEEGGGTT
T ss_pred ccchhHHHHHhhccceEEEECCcHHHHHHHHhCCCeEEEcHHHHHHHh-ccc-CCceEeCCCCCCCcccEEEEEcCcCCC
Confidence 3444433222 233334567899999999999887777755443333 222 3444443 333456678888887554
Q ss_pred hHHHHH
Q 003167 689 AIDMST 694 (843)
Q Consensus 689 ~~~in~ 694 (843)
...+..
T Consensus 205 ~~~~~~ 210 (241)
T 3oxn_A 205 SPAQEW 210 (241)
T ss_dssp CHHHHH
T ss_pred CchhHH
Confidence 433333
No 146
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=95.20 E-value=0.092 Score=54.29 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=85.6
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC------CCCCceEEcCCChHHhHHHHHHHHHHc--CCcE
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP------LQYPFFVQTAPNDLYLMSAIAEMVSYF--GWGE 74 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~------~~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~~ 74 (843)
++|++||..... ....+.. ...++|+|..+..+|.... ...+++..+. +...+...++++... |.++
T Consensus 68 ~~vDgII~~~~~-~~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~ 142 (302)
T 2qh8_A 68 ENPDVLVGIATP-TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKS 142 (302)
T ss_dssp TCCSEEEEESHH-HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCE
T ss_pred CCCCEEEECChH-HHHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcE
Confidence 567788865432 2333333 2679999987655543211 1123444443 222345566777776 9999
Q ss_pred EEEEEecCC-CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHH
Q 003167 75 VIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQR 153 (843)
Q Consensus 75 v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~ 153 (843)
+++|+.+.+ .+....+.+++++++.|+++..... .. ..+....++++. .++++|++..+. .+...++.+.+
T Consensus 143 I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~--~~----~~~~~~~~~~l~-~~~dai~~~~D~-~a~g~~~~l~~ 214 (302)
T 2qh8_A 143 IGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA--LK----SADVQSATQAIA-EKSDVIYALIDN-TVASAIEGMIV 214 (302)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC--SS----GGGHHHHHHHHG-GGCSEEEECSCH-HHHTTHHHHHH
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEec--CC----hHHHHHHHHHHh-ccCCEEEECCcH-hHHHHHHHHHH
Confidence 999997543 3566788999999999998775432 12 456777788876 478988775443 33333444444
Q ss_pred cC
Q 003167 154 LG 155 (843)
Q Consensus 154 ~g 155 (843)
.|
T Consensus 215 ~~ 216 (302)
T 2qh8_A 215 AA 216 (302)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 147
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=95.13 E-value=0.065 Score=56.54 Aligned_cols=149 Identities=8% Similarity=-0.022 Sum_probs=87.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccC-CCCCCCCCCCceEEcCCChHHhHHHHHHHHHH-cC-CcEEEEEE
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-FG-WGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at-~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~-~~-w~~v~ii~ 79 (843)
.+|.+||-+..+.........+.+.++|+|..... .|.......+.+..+..++...+..++++|.. +| -++|++|.
T Consensus 103 ~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~ 182 (342)
T 1jx6_A 103 SKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLY 182 (342)
T ss_dssp TTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred cCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 46777776544332222333445668998876332 22110011223444666777777778888766 47 99999997
Q ss_pred ecCC-CCcchHHHHHHHHHhcCc-EEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 NDDD-QGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d~~-~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.+.. ......+.|.+++++.|+ .... .+... .+..+-...+.++.+ .++++|++ .+...+..+++++++.|
T Consensus 183 ~~~~~~~~~R~~Gf~~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g 257 (342)
T 1jx6_A 183 FSEGYISDVRGDTFIHQVNRDNNFELQS--AYYTK--ATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELG 257 (342)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHCCEEEE--EECCC--SSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHT
T ss_pred cCCcchhhHHHHHHHHHHHhCCCcEEEE--EecCC--CCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcC
Confidence 5433 334567889999999886 3322 22222 223333444455443 35677664 55566778899999988
Q ss_pred C
Q 003167 156 M 156 (843)
Q Consensus 156 ~ 156 (843)
+
T Consensus 258 ~ 258 (342)
T 1jx6_A 258 R 258 (342)
T ss_dssp C
T ss_pred C
Confidence 7
No 148
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=95.05 E-value=0.13 Score=55.81 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=97.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD 82 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~ 82 (843)
.+|++||-... .......+...++|+|......+... ..+.+-.+..++..-+..+++.|...|-++++++....
T Consensus 75 ~~vDGiIi~~~---~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~ 149 (412)
T 4fe7_A 75 WLGDGVIADFD---DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPE 149 (412)
T ss_dssp CCCSEEEEETT---CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCT
T ss_pred CCCCEEEEecC---ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccc
Confidence 46777774222 23345567788999998765433211 11334456667777777888888888999999998754
Q ss_pred CC----CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHH-hc-CCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 83 DQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM-MEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 83 ~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-~~-~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
.. .....+.|.+++++.|+........... ..+..+....+.++ +. .++++|+ +.+...+..+++.+++.|+
T Consensus 150 ~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~ 227 (412)
T 4fe7_A 150 SSGKRWATEREYAFRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHI 227 (412)
T ss_dssp TSCCHHHHHHHHHHHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCC
Confidence 43 4567889999999998764322211111 01122333334443 32 4667765 4566677788999999998
Q ss_pred cccceEEEEe
Q 003167 157 MDSGYVWIAT 166 (843)
Q Consensus 157 ~~~~~~~i~~ 166 (843)
..++-+-|++
T Consensus 228 ~vP~disvig 237 (412)
T 4fe7_A 228 PVPEKLCVIG 237 (412)
T ss_dssp CTTTTSEEEE
T ss_pred CCCceEEEEe
Confidence 7655444443
No 149
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=95.00 E-value=0.038 Score=56.90 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=93.5
Q ss_pred CCeEEEEc-CCChH---HHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEE
Q 003167 3 TDTLAIVG-PQSAV---MAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAI 78 (843)
Q Consensus 3 ~~V~aiiG-p~~S~---~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii 78 (843)
.+|.+||= |..+. ........+...++|+|......+.. ..+ .+..++..-+..++++|...|-++++++
T Consensus 70 ~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i 143 (298)
T 3tb6_A 70 QHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGI 143 (298)
T ss_dssp TCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 45666663 33321 23344556677899999876543221 222 3556777777788888888899999999
Q ss_pred EecCC-CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CC--CeEEEEEcChhhHHHHHHHHHH
Q 003167 79 FNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--ME--ARVIVVHGYSRTGLMVFDVAQR 153 (843)
Q Consensus 79 ~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~--~~viv~~~~~~~~~~i~~~a~~ 153 (843)
..... ......+.|.+++++.|+.+.....+..............+.++.+ .+ +++|+ +.+...+..+++.+++
T Consensus 144 ~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~ 222 (298)
T 3tb6_A 144 FKADDTQGVKRMNGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLRE 222 (298)
T ss_dssp EESSSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHH
Confidence 86443 3446688899999999876432211111100000111233343333 23 67765 4456677789999999
Q ss_pred cCCcccceEEEEe
Q 003167 154 LGMMDSGYVWIAT 166 (843)
Q Consensus 154 ~g~~~~~~~~i~~ 166 (843)
.|+..++-+-|++
T Consensus 223 ~g~~vP~di~vvg 235 (298)
T 3tb6_A 223 MDLKVPEDMSIVG 235 (298)
T ss_dssp TTCCTTTTCEEEC
T ss_pred cCCCCCCceEEEe
Confidence 9987655555543
No 150
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=94.91 E-value=0.27 Score=47.21 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=115.6
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++||||+.. .+. ..+-.+++..+.+..+ .++++... ++...+..+|.+|++|+++...
T Consensus 4 g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIF--TVA------------PYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEET--TTH------------HHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 568888874 111 1344677888877764 24555554 4578999999999999998744
Q ss_pred eeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 534 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (843)
... ...+ -..|+....+++++++..+..
T Consensus 62 ~~~---~~~~-~~~~l~~~~~~~v~~~~~pl~------------------------------------------------ 89 (219)
T 3jv9_A 62 PFQ---EPGI-VTEPLYDEPFFVIVPKGHSFE------------------------------------------------ 89 (219)
T ss_dssp SCC---CTTE-EEEEEEEEEEEEEEETTCGGG------------------------------------------------
T ss_pred CCC---CCCe-eEEEeeeceEEEEEeCCCCcc------------------------------------------------
Confidence 222 1222 246677788888888765211
Q ss_pred hhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCchH
Q 003167 535 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSFA 613 (843)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~-i~~~~~~~~ 613 (843)
....-+++||. +.+ +....+...
T Consensus 90 ------------------------------------------------------~~~~~~~~~L~--~~~~i~~~~~~~~ 113 (219)
T 3jv9_A 90 ------------------------------------------------------ELDAVSPRMLG--EEQVLLLTEGNCM 113 (219)
T ss_dssp ------------------------------------------------------TSSSCCSSTTS--SSCEEEECTTCHH
T ss_pred ------------------------------------------------------cCCCCCHHHhc--CCcEEEecCCccH
Confidence 02334677885 444 444455554
Q ss_pred HHHHHHhhCC--------CCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeec
Q 003167 614 ENYLIEELSI--------PKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFP 683 (843)
Q Consensus 614 ~~~l~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 683 (843)
...+.+.+.. .......+++.+...+.+..|..-+++.+..... + +..++..+.. ......++++.+
T Consensus 114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~-~--~~~~l~~~~~~~~~~~~~~~l~~~ 190 (219)
T 3jv9_A 114 RDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE-N--DHMLFSIIPFEGTPPSRRVVLAYR 190 (219)
T ss_dssp HHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHTSCEEEEEGGGCCT-T--CTTTEEEECCSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcCCcEEehhHHHHHh-c--cCCcEEEEecCCCCcceeEEEEEe
Confidence 5555443322 3344456789999999999988877776655443 2 3345555543 333446778888
Q ss_pred CCCCchHHHHHHHHh
Q 003167 684 RDSPLAIDMSTAILT 698 (843)
Q Consensus 684 k~spl~~~in~~i~~ 698 (843)
++......+...+..
T Consensus 191 ~~~~~~~~~~~~~~~ 205 (219)
T 3jv9_A 191 RNFVRPKALSAMKAA 205 (219)
T ss_dssp TTCSCHHHHHHHHHH
T ss_pred cCccccHHHHHHHHH
Confidence 886655444444433
No 151
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=94.79 E-value=0.32 Score=46.85 Aligned_cols=195 Identities=9% Similarity=-0.015 Sum_probs=115.7
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+||||+.. .+. ..+..+++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVEC--HTC------------FDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCC--TTT------------HHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEeh--HHH------------HHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 3578998874 111 1344678888888775 35566654 456788999999999999874
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
..... ..+ -..++....+++++++..+..
T Consensus 65 ~~~~~---~~~-~~~~l~~~~~~~v~~~~~pl~----------------------------------------------- 93 (222)
T 4ab5_A 65 EAEKQ---NGI-SFQPLFAYEMVGICAPDHPLA----------------------------------------------- 93 (222)
T ss_dssp CCCCC---TTE-EEEEEEEEEEEEEECTTSGGG-----------------------------------------------
T ss_pred CCCCc---CCe-EEEEeecCcEEEEecCCChhh-----------------------------------------------
Confidence 33221 122 245777788888887665211
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEE-EeCch
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGY-QVGSF 612 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~-~~~~~ 612 (843)
....-+++||. +.++.. ..++.
T Consensus 94 -------------------------------------------------------~~~~i~~~dL~--~~~~i~~~~~~~ 116 (222)
T 4ab5_A 94 -------------------------------------------------------AKNVWTAEDFI--GETLITYPVPDE 116 (222)
T ss_dssp -------------------------------------------------------GCSEECGGGGS--SSCEEECSSCGG
T ss_pred -------------------------------------------------------ccCCcCHHHHc--CCCEEecCCCcH
Confidence 01233778885 444433 34433
Q ss_pred HHHHHH---HhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcceeeecCCCCch
Q 003167 613 AENYLI---EELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLA 689 (843)
Q Consensus 613 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~ 689 (843)
....+. ...+.... ...+++.+...+.+..|...+++.......+..........+........++++.+++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (222)
T 4ab5_A 117 MLDLPKKILIPKNINPP-RRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYVVHRQITADGLQSKLYAAIRTEDTDK 195 (222)
T ss_dssp GCHHHHHTTGGGTCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSCEEEEESTTCCEEEEEEEEEGGGTTC
T ss_pred HHHHHHHHHHHcCCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcEEEEecCCCccceEEEEEEeCCcccC
Confidence 333332 23455545 67788999999999998776776554333333222222333344334567788888876655
Q ss_pred HHHHHHHHhh
Q 003167 690 IDMSTAILTL 699 (843)
Q Consensus 690 ~~in~~i~~l 699 (843)
..+...+..+
T Consensus 196 ~~~~~f~~~l 205 (222)
T 4ab5_A 196 SYLNNFCQII 205 (222)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 152
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=94.75 E-value=0.3 Score=47.47 Aligned_cols=195 Identities=12% Similarity=-0.008 Sum_probs=117.0
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+|+||+.. .+. ..+..+++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 10 ~g~l~Ig~~~--~~~------------~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 67 (232)
T 3ho7_A 10 TGRLNIAVLP--TIA------------PYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIA 67 (232)
T ss_dssp CEEEEEEECT--TTH------------HHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred ceeEEEEecc--ccc------------hhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEc
Confidence 3578998874 111 1345677888888775 35666665 568899999999999999875
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
..... ..+ -+.++....+++++++..+..
T Consensus 68 ~~~~~---~~l-~~~~l~~~~~~~v~~~~hpl~----------------------------------------------- 96 (232)
T 3ho7_A 68 SKAET---EGL-EDDLLYYEEFLGYVSRCEPLF----------------------------------------------- 96 (232)
T ss_dssp SCCCC---TTE-EEEEEEEEEEEEEECTTSGGG-----------------------------------------------
T ss_pred CCCCC---CCe-EEEEecccCEEEEEcCCCccc-----------------------------------------------
Confidence 43322 222 246777888888887765211
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCc-
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGS- 611 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~-i~~~~~~- 611 (843)
....-+++||. +.+ +....+.
T Consensus 97 -------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~ 119 (232)
T 3ho7_A 97 -------------------------------------------------------EQDVIRTTEVN--PHRLWLLDEGHC 119 (232)
T ss_dssp -------------------------------------------------------GSSSBCGGGCC--GGGBCCCTTTTT
T ss_pred -------------------------------------------------------cCCCcCHHHhc--CCCEEEecCCCc
Confidence 02334566774 333 2222222
Q ss_pred ---hHHHHHHHhhCCC-CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcceeeecCCCC
Q 003167 612 ---FAENYLIEELSIP-KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 612 ---~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~sp 687 (843)
....++ ...+.. ......+++.+...+.+..|...+++.......+..........+........++++.+++.+
T Consensus 120 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 198 (232)
T 3ho7_A 120 FRDQLVRFC-QMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYS 198 (232)
T ss_dssp TTSTTHHHH-TCTTTTCSSEEEESCCHHHHHHHHHTTCCEEEEEGGGGGGSCHHHHTTEECBCSSEEEEEEEEEEETTCS
T ss_pred HHHHHHHHH-HHcCCCcCceeEEeCCHHHHHHHHHcCCcEEEecHHHhhhhcccCceEEEEccCCCceEEEEEEEeCCCc
Confidence 234444 334443 455677899999999999988877776544332221212222333333445678888888876
Q ss_pred chHHHHHHHHhh
Q 003167 688 LAIDMSTAILTL 699 (843)
Q Consensus 688 l~~~in~~i~~l 699 (843)
....+...+..+
T Consensus 199 ~~~~~~~~~~~l 210 (232)
T 3ho7_A 199 RRKLREQLIGLL 210 (232)
T ss_dssp CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 655555544433
No 153
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=94.69 E-value=0.41 Score=48.80 Aligned_cols=159 Identities=13% Similarity=0.055 Sum_probs=90.2
Q ss_pred CCCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCC-C-CCCCceEEcCCChHHhHHHHHHHHHHc-C--CcEE
Q 003167 2 ETDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLS-P-LQYPFFVQTAPNDLYLMSAIAEMVSYF-G--WGEV 75 (843)
Q Consensus 2 ~~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls-~-~~~p~~fR~~p~d~~~~~ai~~ll~~~-~--w~~v 75 (843)
+.+|++|| -|..+.........+...++|+|......+... . ..-++.-.+..++..-+..++++|... | -+++
T Consensus 57 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I 136 (288)
T 1gud_A 57 NKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEV 136 (288)
T ss_dssp TSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEE
T ss_pred HcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEE
Confidence 35688876 333332211223344567999998754321100 0 000110235566666667777877665 8 8999
Q ss_pred EEEEecCCC--CcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHH
Q 003167 76 IAIFNDDDQ--GRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 76 ~ii~~d~~~--g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~ 150 (843)
++|..+... .....+.|.+++++. |+.+..... .. .+..+-...++++.+ ..+++|+. .+...+..+++.
T Consensus 137 ~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~~~--~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~a 211 (288)
T 1gud_A 137 AIIEGKAGNASGEARRNGATEAFKKASQIKLVASQP--AD--WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQA 211 (288)
T ss_dssp EEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEEEE--CT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHH
T ss_pred EEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEeec--CC--ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHH
Confidence 999864332 345678899999988 887654321 11 123333344444433 34676554 556677889999
Q ss_pred HHHcCCcccceEEEEe
Q 003167 151 AQRLGMMDSGYVWIAT 166 (843)
Q Consensus 151 a~~~g~~~~~~~~i~~ 166 (843)
+++.|+. .+...++-
T Consensus 212 l~~~G~~-~dv~vvGf 226 (288)
T 1gud_A 212 VANAGKT-GKVLVVGT 226 (288)
T ss_dssp HHHTTCT-TTSEEEEE
T ss_pred HHhcCCC-CCeEEEEe
Confidence 9999974 34444443
No 154
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.65 E-value=0.19 Score=50.20 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=79.7
Q ss_pred hcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec--C-CCCcchHHHHHHHHHhc
Q 003167 23 LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND--D-DQGRNGVTALGDKLAEI 99 (843)
Q Consensus 23 ~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~l~~~ 99 (843)
.+...++|+|...... +.+-.+..++..-+..++++|...|.++|+++..+ + .......+.|.+++++.
T Consensus 74 ~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~ 145 (255)
T 1byk_A 74 MLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAH 145 (255)
T ss_dssp TSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHT
T ss_pred HHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHc
Confidence 3455688988765421 12334556677777778888888899999999854 2 34567788999999999
Q ss_pred CcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 100 RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 100 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
|+.+.. +... .+..+-...+.++.+.++++|++ .+...+..+++++++.|+
T Consensus 146 g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 146 KLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI 196 (255)
T ss_dssp TCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC
Confidence 976432 2222 22333334445554456787654 556677889999999987
No 155
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=94.63 E-value=0.33 Score=48.01 Aligned_cols=82 Identities=13% Similarity=-0.004 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCC-----CCChhHHHHHHHH-H-hcCC
Q 003167 59 LMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVK-V-RMME 131 (843)
Q Consensus 59 ~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~-i-~~~~ 131 (843)
.+.++++.++..|-++|+++.. |.....+.+++.+++.|++|+......... ..+...+...+.+ + ...+
T Consensus 104 ~~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (240)
T 3ixl_A 104 MSTAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPD 180 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCC
Confidence 3578888889999999999974 788888899999999999987665443220 0134566777777 7 6778
Q ss_pred CeEEEEEcChhh
Q 003167 132 ARVIVVHGYSRT 143 (843)
Q Consensus 132 ~~viv~~~~~~~ 143 (843)
+|+|++.|..-.
T Consensus 181 adaivL~CT~l~ 192 (240)
T 3ixl_A 181 SDGILLSSGGLL 192 (240)
T ss_dssp CSEEEEECTTSC
T ss_pred CCEEEEeCCCCc
Confidence 999988876533
No 156
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.59 E-value=0.24 Score=52.27 Aligned_cols=150 Identities=9% Similarity=0.020 Sum_probs=89.2
Q ss_pred CCeEEEE--cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aii--Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
.+|++|| +|..... .+...+...++|+|...... ....+ .+..++..-+..++++|...|.++|++|..
T Consensus 117 ~~vdGiIi~~~~~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g 187 (349)
T 1jye_A 117 QRVSGLIINYPLDDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAG 187 (349)
T ss_dssp TTCSCEEEESCCCHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred CCCCEEEEecCCCChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4566555 5554432 22233445789999875421 11223 344555556666777777789999999986
Q ss_pred cCC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 81 DDD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 81 d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
+.. ......+.|.+++++.|+.+.... ..+ .+..+-...+.++.+ ..+++|++ .+...+..+++.+++.|+
T Consensus 188 ~~~~~~~~~R~~Gf~~al~~~gi~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~ 262 (349)
T 1jye_A 188 PLSSVSARLRLAGWHKYLTRNQIQPIAER--EGD--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGL 262 (349)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCCCSEEE--ECC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccc--cCC--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCC
Confidence 533 234567889999999997643221 111 112222333444433 35677654 456667789999999998
Q ss_pred cccceEEEEe
Q 003167 157 MDSGYVWIAT 166 (843)
Q Consensus 157 ~~~~~~~i~~ 166 (843)
..++-+-|++
T Consensus 263 ~vP~disvvG 272 (349)
T 1jye_A 263 RVGADISVVG 272 (349)
T ss_dssp CBTTTBEEEC
T ss_pred CCCCcEEEEE
Confidence 7655554443
No 157
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=94.55 E-value=0.076 Score=53.98 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=84.9
Q ss_pred CCeEEEEcCCChHHHHHHHH-hcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSH-LANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~-~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
.+|.+||-...+. .... .+...++|+|......+.. . .+..++...+..++++|...|-++++++..+
T Consensus 63 ~~~dgiIi~~~~~---~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~ 131 (277)
T 3e61_A 63 HNCTGMISTAFNE---NIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHEN 131 (277)
T ss_dssp TTCSEEEECGGGH---HHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESC
T ss_pred CCCCEEEEecCCh---HHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 4566666332222 2234 5667799999986543221 1 5666777777788888888899999999864
Q ss_pred C--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcChhhHHHHHHHHHHcCCcc
Q 003167 82 D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYSRTGLMVFDVAQRLGMMD 158 (843)
Q Consensus 82 ~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~~~~~~i~~~a~~~g~~~ 158 (843)
. .......+.|.+++++.|+.+.. ...... .....+.. ++. .++++|++ .+...+..+++.+++.|+..
T Consensus 132 ~~~~~~~~R~~gf~~~l~~~~~~~~~-~~~~~~--~~~~~~~~----l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~v 203 (277)
T 3e61_A 132 LLIDAFHQRVQGIKYILDQQRIDYKM-LEATLL--DNDKKFID----LIKELSIDSIIC-SNDLLAINVLGIVQRYHFKV 203 (277)
T ss_dssp TTSHHHHHHHHHHHHHHHC---CEEE-EEGGGG--GSHHHHHH----HHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCT
T ss_pred CCCccHHHHHHHHHHHHHHcCCCccc-eecCCC--CHHHHHHH----hhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCC
Confidence 3 34456688999999999987664 211111 11122222 332 46777665 45667778999999999876
Q ss_pred cceEEEEe
Q 003167 159 SGYVWIAT 166 (843)
Q Consensus 159 ~~~~~i~~ 166 (843)
++-+-|++
T Consensus 204 P~di~vig 211 (277)
T 3e61_A 204 PAEIQIIG 211 (277)
T ss_dssp TTTCEEEC
T ss_pred CCceEEEe
Confidence 55555543
No 158
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=94.52 E-value=0.058 Score=48.23 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=48.9
Q ss_pred ccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeec
Q 003167 531 KQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQ 586 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 586 (843)
.++.+++||++.++.--|. -.|.+..+|++.++|.++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999987763 3799999999999999999999999999999887653
No 159
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=94.42 E-value=0.13 Score=56.00 Aligned_cols=106 Identities=15% Similarity=0.193 Sum_probs=63.6
Q ss_pred hHHh-hhCCC--eEEEE-eCchHHHHH---HHhhCCCC---cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC
Q 003167 595 IDTL-MTSND--RVGYQ-VGSFAENYL---IEELSIPK---SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 664 (843)
Q Consensus 595 ~~dL-~~~~~--~i~~~-~~~~~~~~l---~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 664 (843)
++|| .+.|+ +||+. .++....++ .+..+++. -+++.+ .+.+...+|.+|++|+++...++......+..
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~ 231 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTENI 231 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTS
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCCC
Confidence 6888 65577 89997 576543322 23456654 345555 67889999999999999988888766655533
Q ss_pred CeEEe--CCccccC-cceeeecCC----CC-----chHHHHHHHHhhhc
Q 003167 665 QFSVR--GQEFTKS-GWGFAFPRD----SP-----LAIDMSTAILTLSE 701 (843)
Q Consensus 665 ~l~~~--~~~~~~~-~~~~~~~k~----sp-----l~~~in~~i~~l~e 701 (843)
...+. ++.+... ...+++++. .| +...+.++...+.+
T Consensus 232 g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 232 GYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp CEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred CEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 32222 2222222 245666654 34 44445555555554
No 160
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=94.33 E-value=0.3 Score=50.51 Aligned_cols=146 Identities=8% Similarity=-0.034 Sum_probs=90.4
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHH-HcCCcEEEEEEe
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-YFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~-~~~w~~v~ii~~ 80 (843)
.+|.+|| .|............+.+.++|+|......+. ... ...+..++...+..++++|. ..|-++++++..
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g 131 (313)
T 3m9w_A 57 RGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGG 131 (313)
T ss_dssp TTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEES
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 4566665 3333333234455667889999987654322 121 13455677777788888876 899999999985
Q ss_pred cCC--CCcchHHHHHHHHHhc----CcEEEEeeecCCCCCCChhHHHHHHHHHhc---CCCeEEEEEcChhhHHHHHHHH
Q 003167 81 DDD--QGRNGVTALGDKLAEI----RCKISYKSALPPDQSVTETDVRNELVKVRM---MEARVIVVHGYSRTGLMVFDVA 151 (843)
Q Consensus 81 d~~--~g~~~~~~l~~~l~~~----g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~---~~~~viv~~~~~~~~~~i~~~a 151 (843)
+.. ......+.|.+++++. ++.+..... ... .+..+....+.++.+ .++++|+. .+...+..+++++
T Consensus 132 ~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al 207 (313)
T 3m9w_A 132 SPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQW-VDG--WLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQAL 207 (313)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE-CGG--GCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhccCCCEEEEeecc-CCC--cCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHH
Confidence 432 3445678899999887 566654332 111 123333444444433 35676554 4566777889999
Q ss_pred HHcCCc
Q 003167 152 QRLGMM 157 (843)
Q Consensus 152 ~~~g~~ 157 (843)
++.|+.
T Consensus 208 ~~~G~~ 213 (313)
T 3m9w_A 208 SAQGLS 213 (313)
T ss_dssp HTTTCT
T ss_pred HHcCCC
Confidence 999975
No 161
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=94.30 E-value=0.27 Score=52.03 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=88.7
Q ss_pred HHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCC---CcchHHHHHHHH
Q 003167 20 LSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQ---GRNGVTALGDKL 96 (843)
Q Consensus 20 v~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~---g~~~~~~l~~~l 96 (843)
....+...++|+|...... .. +....+..++..-+..+++.|...|-+++++|..+... .....+.|.+++
T Consensus 141 ~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al 214 (355)
T 3e3m_A 141 TIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAM 214 (355)
T ss_dssp HHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHH
Confidence 3455667899999864221 11 22335666777777778888888899999999975432 356789999999
Q ss_pred HhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcccceEEEEe
Q 003167 97 AEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 97 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~~ 166 (843)
++.|+.+.....+... ..+..+-...+.++.+ ..+++|+ +.+...+..+++.+++.|+..++-+-|++
T Consensus 215 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 215 REAGLNPDQEIRLGAP-PLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp HHTTSCSCCEEEESCS-SCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred HHCCcCCCccEEEecC-CCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 9999865421122111 0123333344444433 4677765 45666777899999999987655554443
No 162
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=94.24 E-value=0.18 Score=52.03 Aligned_cols=148 Identities=9% Similarity=0.076 Sum_probs=91.7
Q ss_pred CCeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d 81 (843)
.+|.+|| -|..... .....+...++|+|...... ... .+-.+..++..-+..+++.|...|-++++++..+
T Consensus 82 ~~vdgiIi~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~ 153 (305)
T 3huu_A 82 KSVDGFILLYSLKDD--PIEHLLNEFKVPYLIVGKSL---NYE---NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQES 153 (305)
T ss_dssp TCCSEEEESSCBTTC--HHHHHHHHTTCCEEEESCCC---SST---TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCCEEEEeCCcCCc--HHHHHHHHcCCCEEEECCCC---ccc---CCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 4677766 2322221 33455667899999875532 111 2334566777777778888888899999999875
Q ss_pred CC--CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHH-hc--CCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 82 DD--QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKV-RM--MEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 82 ~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i-~~--~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
.. ......+.|.+++++.|+.+.. .+... .+.-...+.++ .+ .++++|+ +.+...+..+++.+++.|+
T Consensus 154 ~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 226 (305)
T 3huu_A 154 GHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS----MNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQL 226 (305)
T ss_dssp SCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS----HHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred cccchhHHHHHHHHHHHHHcCCCccc--EEecC----cHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCC
Confidence 43 3456788999999999987553 12112 11133334444 32 4677765 4566777789999999998
Q ss_pred cccceEEEE
Q 003167 157 MDSGYVWIA 165 (843)
Q Consensus 157 ~~~~~~~i~ 165 (843)
..++-+-|+
T Consensus 227 ~vP~di~vi 235 (305)
T 3huu_A 227 RIPEDIQTA 235 (305)
T ss_dssp CTTTTCEEE
T ss_pred CCCcceEEE
Confidence 755444343
No 163
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.21 E-value=0.67 Score=47.39 Aligned_cols=192 Identities=16% Similarity=0.114 Sum_probs=113.4
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++|+||+.. .+. ..+..+++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 94 ~g~l~i~~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFE--TVA------------PLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEG--GGH------------HHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEech--hhh------------HHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3579999974 111 2345678888888775 35566554 558899999999999999863
Q ss_pred eeeecCcceeeeeccccc-ccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Q 003167 454 IAIVTNRTKAVDFTQPYI-ESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQ 532 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~-~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 532 (843)
... ....+. ..|+. ....+++++...+..
T Consensus 152 ~~~---~~~~l~-~~~l~~~~~~~~v~~~~~pl~---------------------------------------------- 181 (306)
T 3fzv_A 152 EHD---LDSTIE-TEPLMPPQRPHALLPEGHRFA---------------------------------------------- 181 (306)
T ss_dssp SSS---CCTTEE-EEESSCCBCCEEEEETTCTTT----------------------------------------------
T ss_pred ccc---cccccc-eeeeeeccccEEEecCCCccc----------------------------------------------
Confidence 221 112222 34555 667777777655211
Q ss_pred chhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEE-eCc
Q 003167 533 IVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQ-VGS 611 (843)
Q Consensus 533 ~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~-~~~ 611 (843)
....-+++||. +.++... .+.
T Consensus 182 --------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~ 203 (306)
T 3fzv_A 182 --------------------------------------------------------GQAQVSLRDLC--LEPMILLDVQP 203 (306)
T ss_dssp --------------------------------------------------------TSSEECHHHHT--TSCEEEECCTT
T ss_pred --------------------------------------------------------CCCCCCHHHHc--CCCEEEecCCc
Confidence 02335789996 4444333 333
Q ss_pred h---HHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEe--CCccccCcceeeecCCC
Q 003167 612 F---AENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR--GQEFTKSGWGFAFPRDS 686 (843)
Q Consensus 612 ~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~k~s 686 (843)
. ...++ +..+.........++.+.....+..|..-+++.+.....+. .....+..+ ..+.....++++.+++.
T Consensus 204 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 281 (306)
T 3fzv_A 204 SRTYFVSLF-EELGLTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECT-YDGKKVVMVDLAEPVSTSGLAAAWLKRA 281 (306)
T ss_dssp HHHHHHHHH-HHTTCCCCEEEEESCHHHHHHHHHTTSCBEEECCCCSCSBC-TTSCBEEEEEESSCCCBCCCEEEEETTS
T ss_pred chHHHHHHH-HHcCCCCCeEEEeCCHHHHHHHHHcCCCEEEEecccccccc-cCCCceEEEECCCCCccceEEEEEeCCc
Confidence 2 22333 34566555566778999999999998766776553332221 111124443 34444567888888886
Q ss_pred CchHHHHHHHH
Q 003167 687 PLAIDMSTAIL 697 (843)
Q Consensus 687 pl~~~in~~i~ 697 (843)
+....+...+.
T Consensus 282 ~~~~~~~~f~~ 292 (306)
T 3fzv_A 282 QLTKPARLFVD 292 (306)
T ss_dssp CCCHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 55544444443
No 164
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.07 E-value=0.14 Score=53.10 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=42.2
Q ss_pred CCCChHHhhhCCCeEEE-EeCchHHHHH---HHhhCCCCcce--EeCCCHHHHHHHHhcCCcEEEEcC
Q 003167 591 PIKGIDTLMTSNDRVGY-QVGSFAENYL---IEELSIPKSRL--VALGSPEEYAIALENRTVAAVVDE 652 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~-~~~~~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~~~~ 652 (843)
++++++||. ++++++ ..|+.....+ .+..+.....+ ..+.+..+.+.++..|++|+.+..
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 788999996 678887 4566433322 24456654433 356678899999999999998865
No 165
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.05 E-value=0.21 Score=53.02 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhH
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYI 656 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~ 656 (843)
.+|++++||. |++|.+. +......+ +.+|.. .+++ ...|...+|++|.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHcCCcceeecCCcch
Confidence 6899999995 9999988 55555566 556643 3333 567899999999999998777665
No 166
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.93 E-value=0.18 Score=53.10 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=92.5
Q ss_pred CCeEEEE--cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIV--GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aii--Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
.+|++|| +...+. .....+...++|+|...... +. +.. .+..++..-+..+++.|...|.++++++..
T Consensus 117 ~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~~~~~~----~~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~ 186 (339)
T 3h5o_A 117 HRPDGVLITGLSHAE---PFERILSQHALPVVYMMDLA----DD--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGA 186 (339)
T ss_dssp TCCSEEEEECSCCCT---THHHHHHHTTCCEEEEESCC----SS--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCEEEEeCCCCCH---HHHHHHhcCCCCEEEEeecC----CC--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 4566655 322222 33445667899999874321 11 122 566677777777888888889999999987
Q ss_pred cC-CCCcchHHHHHHHHHhcCcEEEEee-ecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 81 DD-DQGRNGVTALGDKLAEIRCKISYKS-ALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 81 d~-~~g~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
+. .......+.|.+++++.|+...... ..... .+..+-...+.++.+ .++++|+. .+...+..+++++++.|+
T Consensus 187 ~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~ 263 (339)
T 3h5o_A 187 QLDERVMKRLDGYRAALDAADCRDAGLEWLDPQP--SSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGI 263 (339)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHHHCCCCCCChheEecCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCC
Confidence 53 2344567889999999987211111 11111 223333444444433 36777664 566777889999999998
Q ss_pred cccceEEEEe
Q 003167 157 MDSGYVWIAT 166 (843)
Q Consensus 157 ~~~~~~~i~~ 166 (843)
..++-+-|++
T Consensus 264 ~vP~disvvg 273 (339)
T 3h5o_A 264 AVPERLAIAG 273 (339)
T ss_dssp CTTTTCEEEC
T ss_pred CCCCCEEEEE
Confidence 7665554443
No 167
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=93.93 E-value=0.41 Score=50.08 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=84.6
Q ss_pred HhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHHHhc
Q 003167 22 HLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAEI 99 (843)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~~ 99 (843)
..+...++|+|......+. .. +-.+..++..-+..++++|...|-++++++....+ ......+.|.+++++.
T Consensus 130 ~~~~~~~iPvV~~~~~~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 203 (333)
T 3jvd_A 130 GSIAPEGIPMVQLTRGELG---PG---FPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIY 203 (333)
T ss_dssp TCCC-CCSCEEEECC-------CC---SCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCCCCEEEECccCCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHC
Confidence 4466789999987553321 22 22345667777777888888889999999987533 3456788999999999
Q ss_pred CcEEEEeeecCCCCCCChhHHHHHHHHHhcCC-CeEEEEEcChhhHHHHHHHHHHcCCcccceEEEE
Q 003167 100 RCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 165 (843)
Q Consensus 100 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~ 165 (843)
|+.... .. .. .+..+-...+.++.+.. +++|+. .+...+..+++.+++.|+..++-+-|+
T Consensus 204 g~~~~~--~~-~~--~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvi 264 (333)
T 3jvd_A 204 GAEVTF--HF-GH--YSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDVVIG 264 (333)
T ss_dssp TCEEEE--EE-CC--SSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCEEE--ec-CC--CCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 987221 11 11 12344444555554433 777664 556677789999999998765544444
No 168
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.63 E-value=0.15 Score=51.80 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=86.3
Q ss_pred hcccCCCcEEecccC-CCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecC--CCCcchHHHHHHHHHhc
Q 003167 23 LANELQVPLLSFTAL-DPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAEI 99 (843)
Q Consensus 23 ~~~~~~vP~Is~~at-~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~ 99 (843)
.+...++|+|..... .+ + +.+ .+..++..-+..++++|. .|-++++++.... .......+.|.+++++.
T Consensus 80 ~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 151 (277)
T 3hs3_A 80 PNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKL 151 (277)
T ss_dssp TTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHC
Confidence 356678999987554 22 1 234 666777777777888888 9999999998643 33456788999999999
Q ss_pred CcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcccceEEEEe
Q 003167 100 RCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 100 g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~~ 166 (843)
|+.+... .+... .+ ...+.++.+ .++++|+ +.+...+..+++.+++.|+..++-+-|++
T Consensus 152 g~~~~~~-~~~~~---~~---~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig 212 (277)
T 3hs3_A 152 KIDYLLE-ETPEN---NP---YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQLVG 212 (277)
T ss_dssp TCEEEEE-ECCSS---CH---HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred CCCCCCC-CccCC---ch---HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 9987655 33222 12 344444433 4567765 45566777899999999987655554443
No 169
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=93.55 E-value=0.78 Score=47.62 Aligned_cols=154 Identities=12% Similarity=-0.009 Sum_probs=86.0
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccC-CCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHH----HHHHHHcCC-cEEE
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAI----AEMVSYFGW-GEVI 76 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~-~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai----~~ll~~~~w-~~v~ 76 (843)
+++.+||...... ..++..++..+ ++|++......+ . .+.+-.... |..++..+ +.++...|- ++|+
T Consensus 61 ~~~dgIi~~~~~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig 133 (318)
T 2fqx_A 61 ENMGLVVACGSFL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVG 133 (318)
T ss_dssp TTCSEEEEESTTT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCEEEECChhH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEE
Confidence 4677777543221 22344555544 799887654221 0 122222222 44444444 456666777 8999
Q ss_pred EEEecC-CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 77 AIFNDD-DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 77 ii~~d~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
+|.... .........|.+.+++.|..+.....+... -.+...-.....++.+.++|+|+.. ....+..+++++++.|
T Consensus 134 ~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g 211 (318)
T 2fqx_A 134 FIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRR 211 (318)
T ss_dssp EEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhh
Confidence 997543 334556888999999888644322222211 0112223344555555679987654 4455667888999988
Q ss_pred CcccceEEEEe
Q 003167 156 MMDSGYVWIAT 166 (843)
Q Consensus 156 ~~~~~~~~i~~ 166 (843)
+. +.-+++++
T Consensus 212 ~~-P~dv~viG 221 (318)
T 2fqx_A 212 LN-GQDVWVIG 221 (318)
T ss_dssp HT-TCCCEEEE
T ss_pred hc-cCCcEEEE
Confidence 76 44455554
No 170
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=93.31 E-value=0.53 Score=48.47 Aligned_cols=87 Identities=8% Similarity=-0.021 Sum_probs=53.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |++|.+. |+.....+ +.+|.. .++. ...|...+|++|.+|+.........-. ..+-.++..
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~ 199 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIA-ELVGAQ---PVTV-QQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFY 199 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHH-HHcCCc---ceec-CHHHHHHHHhcCeeeEEecCccccccccHHHHhhhhe
Confidence 6899999995 9999986 65555555 566643 3333 678899999999999996543332211 112234444
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
..... .....+++++.
T Consensus 200 ~~~~~-~~~~~~~~n~~ 215 (301)
T 2pfz_A 200 DTEAW-LPKNAVLVNKK 215 (301)
T ss_dssp CCCCC-CCEEEEEEEHH
T ss_pred ecccc-cceeEEEEcHH
Confidence 32222 23345666654
No 171
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.18 E-value=0.18 Score=40.41 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=44.9
Q ss_pred cchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeee
Q 003167 532 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 583 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (843)
++.+++|+++.++.--|. -.|.+..+|++.+.|.++++.+.+...+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999987763 3788999999999999999999999888877643
No 172
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.14 E-value=0.54 Score=48.41 Aligned_cols=87 Identities=9% Similarity=0.002 Sum_probs=53.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |.+|.+. |+.....+ +.+|.. .++. ...|...+|++|.+|+.........-. +.+-.++..
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~-~~lGa~---pv~~-~~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~k~~~ 200 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMA-ALMGAV---PTTV-QTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYY 200 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHH-HHTTSE---EEEC-CGGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHH-HHcCCc---ceec-cHHHHHHHHhcceeeeEecCccccccccHHHHhhhhc
Confidence 5899999995 9999986 66555555 556643 3333 667899999999999996543332211 112234444
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
.... ......+++++.
T Consensus 201 ~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 201 DAQA-FIPQSFVIANKR 216 (301)
T ss_dssp ECCC-CCCEEEEEEEHH
T ss_pred cccc-ccceeeEEEcHH
Confidence 3332 223345666665
No 173
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=92.94 E-value=1.9 Score=40.77 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=55.8
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+||||+.. ... ..+-.+++..+.++.+ .++++... ++...+..+|.+|++|+++..
T Consensus 4 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 4 AGPIAVGCYP--ALG------------PTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp CEEEEEEECG--GGT------------TTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEE
T ss_pred ceeEEEeech--hhh------------hhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEe
Confidence 3578998874 111 1345678888888875 46666665 567899999999999999863
Q ss_pred eeeecCcceeeeecccccccceEEEEeccC
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. .....+. +.++....++++++...
T Consensus 62 ~~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 62 DL---DLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SS---SCCTTEE-EEEEEEECCEEEEETTC
T ss_pred cC---CCCCCce-EEEeecCceEEEEeCCC
Confidence 21 1112222 35677788888887654
No 174
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.91 E-value=0.31 Score=55.36 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHhhhhcc-eeeeeeeccccCCC-----CCh-HHhhhCC
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTAS-LTSILTVQQLSSPI-----KGI-DTLMTSN 602 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~i-----~s~-~dL~~~~ 602 (843)
++..++||++.++.-.|.. .|.+..+|++.++|.++++.+.+...+. ++++++.+..+... ... +.+ .
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 127 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT---R 127 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---C
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---C
Confidence 6899999999999977643 6888889999999999998888777766 44444332222111 111 222 2
Q ss_pred CeEEEE-eCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcC-CcEEEEcChhhHHH
Q 003167 603 DRVGYQ-VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENR-TVAAVVDERPYIDL 658 (843)
Q Consensus 603 ~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~a~~~~~~~~~~ 658 (843)
.++.+. .|....... +.+......++.++..++..+.+... +..++..+...-+.
T Consensus 128 ~hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~ 184 (565)
T 4gx0_A 128 GHILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHV 184 (565)
T ss_dssp SCEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHH
T ss_pred CeEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHH
Confidence 234333 344433333 44433445566677777777777776 77777777544333
No 175
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=92.84 E-value=0.37 Score=50.67 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=44.5
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHH---HHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYL---IEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
..+++++||. |++||+. ++....++ .+..+++...+..++...+...++.+|.+|+.+.-.++....
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQVE 170 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHHH
Confidence 4678899995 9999985 44333222 245566666555444445567889999999998776665443
No 176
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=92.64 E-value=0.12 Score=42.90 Aligned_cols=58 Identities=14% Similarity=0.334 Sum_probs=50.1
Q ss_pred cchhhHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecccc
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 589 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 589 (843)
++.+++|+++.++.--|.. .|.+..+|++.++|.++++.+.+...+.+++.++.++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5889999999999877643 788999999999999999999999999999887765543
No 177
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=92.52 E-value=2.8 Score=40.61 Aligned_cols=83 Identities=11% Similarity=0.240 Sum_probs=55.3
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
.+||||+.. .+ ...+-..++..+.+..+ .++++... ++...++.+|.+|++|+++...
T Consensus 30 g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTP--TF------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECH--HH------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeech--hh------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 568999863 11 12345678888888875 35666665 5578899999999999998632
Q ss_pred eeecCcceeeeecccccccceEEEEeccC
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. ....+. +.++....+++++++..
T Consensus 88 ~~---~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 PV---HSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SC---CCTTEE-EEEEEEEEEEEEEETTS
T ss_pred CC---Ccccce-eeeeccCcEEEEEcCCC
Confidence 21 112222 35777888888887655
No 178
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=92.26 E-value=4 Score=39.29 Aligned_cols=196 Identities=10% Similarity=0.066 Sum_probs=117.6
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++||||+.. .+ ...+-.+++..+.+..+ .++++... ++...++++|.+|++|+++..
T Consensus 13 ~g~lrIg~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 13 SGVLTIATTH--TQ------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred cceEEEeecc--ch------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEe
Confidence 3578999874 11 12445678888888876 46676665 568899999999999999863
Q ss_pred eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccc
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQI 533 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 533 (843)
... .....+. ..++....+++++++..+..
T Consensus 71 ~~~--~~~~~l~-~~~l~~~~~~~v~~~~hpla----------------------------------------------- 100 (228)
T 2fyi_A 71 ERL--SNDPQLV-AFPWFRWHHSLLVPHDHPLT----------------------------------------------- 100 (228)
T ss_dssp SSS--TTCTTEE-EEEEEEECEEEEEETTCGGG-----------------------------------------------
T ss_pred ccc--CCCCCce-EEEeeecceEEEecCCCCcc-----------------------------------------------
Confidence 211 1112222 35777788888887655210
Q ss_pred hhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCch
Q 003167 534 VTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSF 612 (843)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~-i~~~~~~~ 612 (843)
....-+++||. +.+ |.+..++.
T Consensus 101 -------------------------------------------------------~~~~i~~~dL~--~~~~i~~~~~~~ 123 (228)
T 2fyi_A 101 -------------------------------------------------------QISPLTLESIA--KWPLITYRQGIT 123 (228)
T ss_dssp -------------------------------------------------------TSSSCCHHHHT--TSCEEEECTTST
T ss_pred -------------------------------------------------------ccCccCHHHHc--CCCeEEecCCcc
Confidence 02345788986 444 44444443
Q ss_pred HHHHHH---HhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeecCCCC
Q 003167 613 AENYLI---EELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSP 687 (843)
Q Consensus 613 ~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~sp 687 (843)
....+. ...+.........++.+...+.+..|..-+++.+... ... ...++..+.- ......++++.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~Gia~lp~~~~-~~~--~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 200 (228)
T 2fyi_A 124 GRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSS-GEQ--EEENLIRLDTRHLFDANTVWLGLKRGQL 200 (228)
T ss_dssp THHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTSCEEEEEGGGG-STT--CCTTEEEECCTTTSCCEEEEEEEETTCC
T ss_pred HHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCCCEEEeehHhh-hhc--ccCCeEEEECCCcccceEEEEEEeCCCc
Confidence 333222 2345544445667889999999999877777755322 111 1234555432 2223457788888877
Q ss_pred chHHHHHHHHhhhc
Q 003167 688 LAIDMSTAILTLSE 701 (843)
Q Consensus 688 l~~~in~~i~~l~e 701 (843)
+...+...+..+.+
T Consensus 201 ~~~~~~~f~~~l~~ 214 (228)
T 2fyi_A 201 QRNYVWRFLELCNA 214 (228)
T ss_dssp BCHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHH
Confidence 66666665554443
No 179
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=92.17 E-value=0.48 Score=50.37 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=54.0
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH--HhcCCCeE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF--LSDHCQFS 667 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~--~~~~~~l~ 667 (843)
.+|++++||. |++|.+. + .....+ +.+|.. .++. ...|...+|++|.+|+.....+...+- ..+-.++.
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~-~~lGa~---pv~~-~~~e~y~ALq~G~VDg~~~~~p~~~~~~~~~ev~k~~ 233 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVM-ERLGVV---PQQI-AGGDIYPALEKGTIDATEWVGPYDDEKLGFFKVAPYY 233 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHH-HTTTCE---EECC-CTTSHHHHHHHTSCSEECCSCHHHHHHHTGGGTCCEE
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHH-HHcCCc---ceec-CHHHHHHHHhCCCcceeeccCccchhhcChHHhhhee
Confidence 6899999995 9999887 5 445555 556643 2222 456788999999999998665554321 12234554
Q ss_pred EeCC-ccccCcceeeecCC
Q 003167 668 VRGQ-EFTKSGWGFAFPRD 685 (843)
Q Consensus 668 ~~~~-~~~~~~~~~~~~k~ 685 (843)
.... ........+++++.
T Consensus 234 ~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 234 YYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp EECBTTCSSCEEEEEEEHH
T ss_pred eccCccccccceEEEEcHH
Confidence 4333 22223346667765
No 180
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=92.07 E-value=0.56 Score=45.51 Aligned_cols=70 Identities=11% Similarity=-0.022 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCc-ccEEEeceeeecC---cceeee--ecccccccceEEE
Q 003167 405 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGV-FDAAVGDIAIVTN---RTKAVD--FTQPYIESGLVVV 478 (843)
Q Consensus 405 ~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~-~Di~~~~~~i~~~---r~~~vd--fs~p~~~~~~~~~ 478 (843)
-++++.+.++-|.++++.. ++-..++.+|.+|+ +|+++..-....+ ....+. -..|+....++++
T Consensus 15 ~~~~~~F~~~p~i~v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv 85 (231)
T 1atg_A 15 EQLAGQFAKQTGHAVVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLW 85 (231)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEE
Confidence 4677777777676655433 34678999999998 9998763211111 111111 2467888888888
Q ss_pred EeccC
Q 003167 479 APVRK 483 (843)
Q Consensus 479 v~~~~ 483 (843)
+++..
T Consensus 86 ~~~~~ 90 (231)
T 1atg_A 86 SAKPG 90 (231)
T ss_dssp ESSTT
T ss_pred EcCCC
Confidence 87655
No 181
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=91.98 E-value=2.9 Score=42.65 Aligned_cols=190 Identities=9% Similarity=0.034 Sum_probs=110.0
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec-
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD- 453 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~- 453 (843)
.+|+||+.. .+ ...+..+++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 101 ~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 158 (310)
T 2esn_A 101 RTFVFAATD--YT------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYD 158 (310)
T ss_dssp CEEEEECCH--HH------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECC
T ss_pred ceEEEEeCh--HH------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecC
Confidence 578998863 11 11344677788888775 35566654 345578889999999999874
Q ss_pred --eeeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q 003167 454 --IAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRK 531 (843)
Q Consensus 454 --~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 531 (843)
.... ...+ -..|+....+++++++..+..
T Consensus 159 ~~~~~~---~~~l-~~~~l~~~~~~~v~~~~~pl~--------------------------------------------- 189 (310)
T 2esn_A 159 EEHERL---PEGI-QAHDWFADRYVVVARRDHPRL--------------------------------------------- 189 (310)
T ss_dssp STTCCC---CTTE-EEEEEEEECEEEEEESSCTTC---------------------------------------------
T ss_pred cccccC---CcCc-ceeeeeccceEEEEeCCCCCc---------------------------------------------
Confidence 2211 1122 235677788888887655210
Q ss_pred cchhhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEE-EeC
Q 003167 532 QIVTVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGY-QVG 610 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~-~~~ 610 (843)
...-+++||. +.++.. ..+
T Consensus 190 ----------------------------------------------------------~~~i~~~dL~--~~~~i~~~~~ 209 (310)
T 2esn_A 190 ----------------------------------------------------------AGAPTLEGYL--AERHAVVTPW 209 (310)
T ss_dssp ----------------------------------------------------------SSSCCHHHHH--TSEEEEECTT
T ss_pred ----------------------------------------------------------CCCCCHHHHh--cCCcEEEeCC
Confidence 1235688886 444333 322
Q ss_pred ----chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC--CccccCcceeeecC
Q 003167 611 ----SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPR 684 (843)
Q Consensus 611 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k 684 (843)
.....++ ...+........+++.+...+.+..|..-+++.......+. .. .++..+. .......++++.++
T Consensus 210 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~~g~Gia~lp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~ 286 (310)
T 2esn_A 210 NEDSGVIDRLL-ARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALA-EA-AGLALYPAPFDIPPYVLRLYSHV 286 (310)
T ss_dssp CCSSCHHHHHH-HHTTCCCEEEEEESCHHHHHHHHHTSSCEEEEEHHHHHHHH-HH-HTEEEECCSSCCCCEEEEEEEEC
T ss_pred CCcccHHHHHH-HhCCCCeeEEEeCCCHHHHHHHHhcCCeEEEcHHHHHHHHh-hc-CCceEecCCCCCCCeeEEEEEeC
Confidence 2344455 34555544556778999999999998776776543332222 21 2344433 22234567788888
Q ss_pred CCCchHHHHHHHHh
Q 003167 685 DSPLAIDMSTAILT 698 (843)
Q Consensus 685 ~spl~~~in~~i~~ 698 (843)
+.+....+...+..
T Consensus 287 ~~~~~~~~~~~~~~ 300 (310)
T 2esn_A 287 QHVGRDAHAWMIGQ 300 (310)
T ss_dssp C--CCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 76655554444433
No 182
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.87 E-value=0.015 Score=54.08 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=56.8
Q ss_pred HHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecc
Q 003167 511 GTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 587 (843)
Q Consensus 511 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (843)
+.++|.+++.. .+....++.+++||++.++.--|. -.|.+..+|++.++|.++++++.+..++.+++.++...
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 233345788999999999987763 37899999999999999999999999999999987533
No 183
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=91.87 E-value=1.8 Score=42.52 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=63.2
Q ss_pred CCCChHHhhhCCCeEEEEe------CchHHHHHHHhhCCC---CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHh
Q 003167 591 PIKGIDTLMTSNDRVGYQV------GSFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLS 661 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~------~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~ 661 (843)
.++++.||.+ +.+|++.. |......| +..+.- ..+++...+..+....+.+|+.|+.+....... .
T Consensus 106 ~~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l-~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~---~ 180 (237)
T 3r26_A 106 SKTNWTSLLN-GGRLAVGDPEHVPAGIYAKEAL-QKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAV---A 180 (237)
T ss_dssp TTCCHHHHHT-TCCEEEECTTTCHHHHHHHHHH-HHTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHH---H
T ss_pred chHhHHHhcC-CCeEEEeCCCCCChHHHHHHHH-HHcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEecccc---c
Confidence 3456777764 45688764 22344455 334431 235666678889999999999999887544332 1
Q ss_pred cCCCeEE---eCCc-cccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhh
Q 003167 662 DHCQFSV---RGQE-FTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 662 ~~~~l~~---~~~~-~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
..++.+ +.+. .....+.+++.|+++- +.- +.......+..-+++..+|
T Consensus 181 -~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A-~~Fi~fl~S~eaq~i~~~~ 232 (237)
T 3r26_A 181 -SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATV-KAFYDYLKGPQAAEIFKRY 232 (237)
T ss_dssp -CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHH-HHHHHHHTSHHHHHHHHHT
T ss_pred -CCCCeEEEECCcccCCeeeeeEEEEcCCCC-HHH-HHHHHHHcCHHHHHHHHHc
Confidence 223333 3332 2334567888888864 322 3333333333345555544
No 184
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=91.82 E-value=0.63 Score=47.16 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=59.1
Q ss_pred CCCChHHhhhCC--CeEEEEeCchHH----HHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCC
Q 003167 591 PIKGIDTLMTSN--DRVGYQVGSFAE----NYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHC 664 (843)
Q Consensus 591 ~i~s~~dL~~~~--~~i~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~ 664 (843)
+|+|++||.... .++|...+.... .-+.+.+++....+... +..+...++++|++|++....+....- + .
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~~--~-~ 199 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRVD--L-F 199 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTTSCSEEEEETTCHHHH--H-T
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcCCCeEEEEeCCCcchh--c-C
Confidence 799999997331 144433221111 01335677765556665 566789999999999999887766542 2 2
Q ss_pred CeEEeCCc---cccCcceeeecCCCCchHHHHHHHHhhh
Q 003167 665 QFSVRGQE---FTKSGWGFAFPRDSPLAIDMSTAILTLS 700 (843)
Q Consensus 665 ~l~~~~~~---~~~~~~~~~~~k~spl~~~in~~i~~l~ 700 (843)
+++++.++ +.......+++++..=.+.+-+.+.++.
T Consensus 200 ~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 200 NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 45555432 2222334455555320034445555553
No 185
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=91.81 E-value=0.26 Score=42.30 Aligned_cols=54 Identities=15% Similarity=0.342 Sum_probs=47.1
Q ss_pred cchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 532 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
++.+++|+++.++.--|. -.|.+..+|++.++|.++++.+.+...+.+.+.++.
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999997763 378899999999999999999999999988877644
No 186
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=91.80 E-value=0.42 Score=50.74 Aligned_cols=136 Identities=9% Similarity=0.005 Sum_probs=83.7
Q ss_pred HhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEec-------------------C
Q 003167 22 HLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFND-------------------D 82 (843)
Q Consensus 22 ~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d-------------------~ 82 (843)
..+...++|+|...... .....+ .+..++..-+..++++|...|-+++++|... .
T Consensus 145 ~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~ 218 (366)
T 3h5t_A 145 DAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQY 218 (366)
T ss_dssp HHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCC
T ss_pred HHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccccccccc
Confidence 44556799999875422 112223 3456667777778888888999999999832 2
Q ss_pred CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcccc
Q 003167 83 DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 83 ~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~ 160 (843)
.......+.|.+++++.|+.+.....+... ..+..+-...+.++.+ ..+++|++ .+...+..+++++++.|+..++
T Consensus 219 ~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~ 296 (366)
T 3h5t_A 219 QVQRDRVRGAMEVFIEAGIDPGTVPIMECW-INNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSVGKSAPA 296 (366)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGSCEEEES-SCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred chHHHHHHHHHHHHHHCCCCCCcceEEEcC-CCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 233566889999999998763210001001 0123333344444433 35777665 4566777899999999987655
Q ss_pred eEEEE
Q 003167 161 YVWIA 165 (843)
Q Consensus 161 ~~~i~ 165 (843)
-+-|+
T Consensus 297 disvi 301 (366)
T 3h5t_A 297 DLSLT 301 (366)
T ss_dssp TCEEE
T ss_pred ceEEE
Confidence 44443
No 187
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=91.78 E-value=1.6 Score=43.50 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCCC--hHHhhhCCCeEEEEeC------chHHHHHHHhhCCC---CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 591 PIKG--IDTLMTSNDRVGYQVG------SFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 591 ~i~s--~~dL~~~~~~i~~~~~------~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
.|++ +.|+.+.+.+|++..- ......| +..+.- ..+++..++..+....+.+|+.|+.+.-.....
T Consensus 119 ~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l-~~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s~a~-- 195 (253)
T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAAL-RKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSDAR-- 195 (253)
T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHH-HHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHHHH--
T ss_pred CCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHH-HHcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhhccc--
Confidence 3555 5555434467888652 2334444 333331 245666788889999999999999887544332
Q ss_pred HhcCCCeEEe---CCc-cccCcceeeecCCC--CchHHHHHHHHhhhccccHHHHHHhh
Q 003167 660 LSDHCQFSVR---GQE-FTKSGWGFAFPRDS--PLAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 660 ~~~~~~l~~~---~~~-~~~~~~~~~~~k~s--pl~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
. ..++.++ .+. .....+.+++.|++ +....|-..| .+..-+++.++|
T Consensus 196 -~-~~~v~~v~~~P~~~~~~i~~~~ai~k~~~~~~A~~Fi~fl----~S~eaq~i~~~~ 248 (253)
T 3gzg_A 196 -A-DAKVRVVATFPDDSHDAIVYPVAALKNSNNPATAAFVSWL----GSKPAKAIFARR 248 (253)
T ss_dssp -H-CTTEEEEEECCGGGSCCEEEEEEECTTCCCTTHHHHHHHT----TSHHHHHHHHHT
T ss_pred -c-CCCceEEEECCcccCceeEEEEEEECCCChHHHHHHHHHH----cCHHHHHHHHHc
Confidence 1 2334443 332 23345677887875 2443333333 333345555544
No 188
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.64 E-value=0.2 Score=51.87 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=51.4
Q ss_pred CcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccc
Q 003167 529 PRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQL 588 (843)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 588 (843)
...++..++||++.++.--|. -.|.+..+|++.+++.++++++.+.-++.+.+.++.+..
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999987763 378888999999999999999999999999998876653
No 189
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=91.55 E-value=2.6 Score=40.41 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=57.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
.++||||+.. .. ...+-..++..+.++.+ .++++... ++...++++|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~--~~------------~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--HH------------HHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 4678988863 11 12445678888888775 35666664 557789999999999999863
Q ss_pred eeeecCcceeeeecccccccceEEEEeccC
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. .....+.+ .|+....++++++...
T Consensus 65 ~~---~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 LP---ELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp CT---TCCTTEEE-EEEEEECEEEEEETTC
T ss_pred CC---CCCcceeE-EEeeeccEEEEEcCCC
Confidence 21 11223433 5788889999998766
No 190
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=91.38 E-value=0.062 Score=55.50 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=83.7
Q ss_pred HHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCC--CCcchHHHHHHHHHh
Q 003167 21 SHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDD--QGRNGVTALGDKLAE 98 (843)
Q Consensus 21 ~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~ 98 (843)
...+...++|+|......+. . +.+-.+..++..-+..++++|...|-++|+++..+.. ......+.|.+++++
T Consensus 85 ~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~ 159 (301)
T 3miz_A 85 DPESGDVSIPTVMINCRPQT---R--ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSE 159 (301)
T ss_dssp CCCCTTCCCCEEEEEEECSS---T--TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCCC---C--CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHH
Confidence 34556678999887553321 1 0123355667777778888888899999999986543 345668899999999
Q ss_pred cCcEEEEeeecCC---CCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHHHHHHHHHHcCCcccceEEEE
Q 003167 99 IRCKISYKSALPP---DQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGLMVFDVAQRLGMMDSGYVWIA 165 (843)
Q Consensus 99 ~g~~v~~~~~~~~---~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~~i~~~a~~~g~~~~~~~~i~ 165 (843)
.|+.+.....+.. ..+.........+.++.+ .++++|+. .+...+..+++.+++.|+..++-+-|+
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 230 (301)
T 3miz_A 160 FGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQDVSIV 230 (301)
T ss_dssp HTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHHHCEEE
T ss_pred cCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeeEE
Confidence 9875421111111 100111111133444433 35777654 456677789999999998655444444
No 191
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=91.20 E-value=0.32 Score=49.76 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=51.1
Q ss_pred CCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecc
Q 003167 527 GPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 587 (843)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (843)
+....++..++||++.++.--|. -.|.+..+|++.+++.++++++.+..++.+.+.++.+.
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33456789999999999986663 37889999999999999999999999998888886543
No 192
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=90.90 E-value=0.18 Score=48.78 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=56.6
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
.+||||+... . ...+-.+++..+.+..+ .++++... ++...++++|.+|++|+++...
T Consensus 5 g~lrIg~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--V------------GPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--T------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--h------------hhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5789988741 1 12445678888888875 46676665 5688999999999999998632
Q ss_pred eeecCcceeeeecccccccceEEEEeccC
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. ....+. +.|+....+++++++..
T Consensus 63 ~~---~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 VK---ESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CG---GGTTSE-EEEEEEEEEEEEEETTS
T ss_pred CC---CCCCcc-eeeeecccEEEEEcCCC
Confidence 21 112222 35777888888888765
No 193
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=90.88 E-value=0.4 Score=43.38 Aligned_cols=54 Identities=17% Similarity=0.357 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
++.+++||++.++.--|.. .|.+..+|++.++|.++++.+.+...+++.+.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999977633 78899999999999999999999999888876644
No 194
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=90.71 E-value=1.2 Score=46.07 Aligned_cols=150 Identities=7% Similarity=-0.028 Sum_probs=89.3
Q ss_pred CeEEEE-cCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHHH-------cCCcEE
Q 003167 4 DTLAIV-GPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVSY-------FGWGEV 75 (843)
Q Consensus 4 ~V~aii-Gp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~~-------~~w~~v 75 (843)
+|.||| -|..+.........+...++|+|......+.. .. ....+..++...+..++++|.. .|-+++
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~--~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i 134 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GD--VSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNI 134 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TT--CCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEE
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--Cc--eeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEE
Confidence 566655 45554444455566778899999876544321 11 2234555677777778887766 688899
Q ss_pred EEEEecCC--CCcchHHHHHHHHHhc---C-cEEEEee-----ecCCCCCCChhHHHHHHHHHhc-----CCCeEEEEEc
Q 003167 76 IAIFNDDD--QGRNGVTALGDKLAEI---R-CKISYKS-----ALPPDQSVTETDVRNELVKVRM-----MEARVIVVHG 139 (843)
Q Consensus 76 ~ii~~d~~--~g~~~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~~~d~~~~l~~i~~-----~~~~viv~~~ 139 (843)
+++..+.. ......+.|.+++++. | +.+.... ..... .+...-...+.++.+ .++++|+ +.
T Consensus 135 ~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~ 211 (330)
T 3uug_A 135 ELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WDPATAQARMDNLLSAYYTDAKVDAVL-SP 211 (330)
T ss_dssp EECBCCTTCHHHHHHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GCHHHHHHHHHHHHHHHCSSSCCCEEE-CS
T ss_pred EEEECCCCCchHHHHHHHHHHHHHhccccCceEEeecccccccccCCC--CCHHHHHHHHHHHHHhcCCCCCeEEEE-EC
Confidence 99975332 3355678888898886 3 5443211 00011 112223333444333 4667654 45
Q ss_pred ChhhHHHHHHHHHHcCCcccc
Q 003167 140 YSRTGLMVFDVAQRLGMMDSG 160 (843)
Q Consensus 140 ~~~~~~~i~~~a~~~g~~~~~ 160 (843)
+...+..+++++++.|+..++
T Consensus 212 nd~~A~g~~~al~~~g~~vP~ 232 (330)
T 3uug_A 212 YDGLSIGIISSLKGVGYGTKD 232 (330)
T ss_dssp SHHHHHHHHHHHHHTTCSSSS
T ss_pred CCchHHHHHHHHHHcCCCCCC
Confidence 566777899999999986544
No 195
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=90.49 E-value=7.4 Score=39.95 Aligned_cols=205 Identities=12% Similarity=0.072 Sum_probs=120.0
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++||||++. .+. ..+...++..+.+..+ .++++... ++.+.++.+|.+|++|+++...
T Consensus 93 g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTH--TQA------------RYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECH--HHH------------HHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEech--hhh------------hhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 578998874 111 2345678888888775 35566655 5578999999999999998642
Q ss_pred eeecCcceeeeecccccccceEEEEeccCCCcCcceecccCchhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccch
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAVTGVFFLVVGTVVWILEHRLNDEFRGPPRKQIV 534 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~~~~~~~~~l~PF~~~vW~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 534 (843)
... ....+. +.|.....++++++...+..
T Consensus 151 ~~~--~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------ 179 (324)
T 1al3_A 151 ALH--LYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------ 179 (324)
T ss_dssp CCC--TTSCEE-EEEEEEECEEEEECTTSTTT------------------------------------------------
T ss_pred CCC--CCCCee-EEEecCCceEEEEcCCCccc------------------------------------------------
Confidence 211 111222 35667778888887655211
Q ss_pred hhHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCe-EEEEeCchH
Q 003167 535 TVLWFSFSTMFFAHRENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDR-VGYQVGSFA 613 (843)
Q Consensus 535 ~~~~~~~~~l~~~~~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~-i~~~~~~~~ 613 (843)
....-+++||. +.+ |.+..+...
T Consensus 180 ------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~ 203 (324)
T 1al3_A 180 ------------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTG 203 (324)
T ss_dssp ------------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTT
T ss_pred ------------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcH
Confidence 02345788986 444 334333322
Q ss_pred ----HHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC--CccccCcceeeecCCCC
Q 003167 614 ----ENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG--QEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 614 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~k~sp 687 (843)
..++ ...+........+++.+...+.+..|..-+++....... .. ..++..+. .......++++.+++.+
T Consensus 204 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~lv~~G~Giailp~~~~~~-~~--~~~L~~~~~~~~~~~~~~~l~~~~~~~ 279 (324)
T 1al3_A 204 RSELDTAF-NRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP-VS--DPDLVKLDANGIFSHSTTKIGFRRSTF 279 (324)
T ss_dssp HHHHHHHH-HHHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGGCCT-TT--CTTSEEEECBTTBCCEEEEEEEETTCC
T ss_pred HHHHHHHH-HHcCCCCceEEEeCCHHHHHHHHHhCCCeEEechhhhhh-hc--cCCeEEEECCCCCcceEEEEEEeCCCC
Confidence 2333 334555444566788999999999987767765432211 11 23454442 33334567788888877
Q ss_pred chHHHHHHHHhhhccccHHHHHHhhc
Q 003167 688 LAIDMSTAILTLSENGELQRIHDKWL 713 (843)
Q Consensus 688 l~~~in~~i~~l~e~G~~~~~~~kw~ 713 (843)
+...+...+..+.+.- -+.+.++++
T Consensus 280 ~~~~~~~fi~~l~~~~-~~~~~~~~~ 304 (324)
T 1al3_A 280 LRSYMYDFIQRFAPHL-TRDVVDTAV 304 (324)
T ss_dssp CCHHHHHHHHHHCTTC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-ccchhhhhh
Confidence 6666666555554432 233444443
No 196
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=90.43 E-value=2.5 Score=43.12 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=55.4
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++||||+.. .+. ..+...++..+.+..+ .++++... ++.+.++..|.+|++|+++...
T Consensus 92 g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASP--AIA------------LAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECH--HHH------------HTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEech--HHH------------HHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 568998874 111 2345677888888775 35666665 4467889999999999998733
Q ss_pred eeecCcceeeeecccccccceEEEEeccC
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.... ....+ -..|+....+++++++..
T Consensus 150 ~~~~-~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTE-EEEEEEECCEEEEEETTC
T ss_pred CCCC-CccCe-eEEEeecCcEEEEEcCCC
Confidence 2211 01112 246777888888887765
No 197
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=90.03 E-value=5.5 Score=40.53 Aligned_cols=140 Identities=14% Similarity=0.024 Sum_probs=78.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccC-CCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHH-HHHHH-cCCcEEEEEE
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIA-EMVSY-FGWGEVIAIF 79 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~-~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~-~ll~~-~~w~~v~ii~ 79 (843)
+++.+||..... ...++..++.++ ++|++...... .. +.+-.... |..++..++ .++.+ .+-++|++|.
T Consensus 62 ~~vdgIi~~~~~-~~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~-d~~~g~~lag~la~~l~~~~~Ig~i~ 133 (296)
T 2hqb_A 62 GGVNLIFGHGHA-FAEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHF-EGYAMGYFGGMVAASMSETHKVGVIA 133 (296)
T ss_dssp TTCCEEEECSTH-HHHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEE-CCHHHHHHHHHHHHHTCSSSEEEEEE
T ss_pred CCCCEEEEcCHh-HHHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEe-chHHHHHHHHHHHHhhccCCeEEEEc
Confidence 578888875433 233455566554 78988764321 11 22222222 344444443 33333 2568999998
Q ss_pred ecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 80 NDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 80 ~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
..... . ....|.+.+++.|.. .....+... -.+...-.....++.+.++++|+. .....+..+++++++.|
T Consensus 134 g~~~~-~-r~~Gf~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 134 AFPWQ-P-EVEGFVDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp SCTTC-H-HHHHHHHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHT
T ss_pred CcCch-h-hHHHHHHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcC
Confidence 64322 2 788899999998874 322222211 011223334455565667888764 44555667888999877
No 198
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=89.92 E-value=0.47 Score=46.41 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcc--cccccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 509 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
+.+.+++.+|+.. .++...++.+++|+++.++.--| .-.|.+..+|++.+++.++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666532 22334579999999999998766 3378899999999999999999999999988876643
No 199
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=89.49 E-value=4.7 Score=40.56 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=56.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+||||+.. .+. ..+..+++..+.+..+ .++++... ++...++.+|.+|++|+++..
T Consensus 90 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 90 VGELSVAYFG--TPI------------YRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp CEEEEEEECS--GGG------------GTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEES
T ss_pred CceEEEEEcc--chh------------HHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 3579999874 111 1345678888888775 35666665 457789999999999999874
Q ss_pred eeeecCcceeeeecccccccceEEEEeccC
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.... ...+. ..|.....++++++...
T Consensus 148 ~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 148 FFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred cCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 3221 12222 35777788888887665
No 200
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=89.43 E-value=0.2 Score=52.60 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHhhhCCCeEEEEe
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQV 609 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL~~~~~~i~~~~ 609 (843)
++.+++||++.++..-|.. .|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+.-
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 5788999999999977633 68889999999999999999999999999998887655432211 11111 22344433
Q ss_pred -CchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH
Q 003167 610 -GSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF 659 (843)
Q Consensus 610 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~ 659 (843)
|....... +.+..... ++..+..++..+ +...+..++..+...-+.+
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L 170 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDL 170 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHH
Confidence 33333333 33322223 555666666666 6666667777765544444
No 201
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=89.17 E-value=2.7 Score=44.42 Aligned_cols=120 Identities=20% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCCCChHHhhhCCCeEEEEe-------Cch-----------------------HHHHHHHhhCCCC--cceEeCCCHH--
Q 003167 590 SPIKGIDTLMTSNDRVGYQV-------GSF-----------------------AENYLIEELSIPK--SRLVALGSPE-- 635 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~-------~~~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~-- 635 (843)
.+|++++||. |++||+.. |+. ...+| +..+++. .+++.++..+
T Consensus 109 s~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 109 SPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp CSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCcccc
Confidence 3799999995 99999986 442 23344 4556553 3455555431
Q ss_pred -----------------------HHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCcc---cc-CcceeeecC----
Q 003167 636 -----------------------EYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEF---TK-SGWGFAFPR---- 684 (843)
Q Consensus 636 -----------------------~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~~~~~k---- 684 (843)
+...+|.+|++||++...++...... .+..++.+.- .. ....+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~~~p~~~~~~~--~g~~~l~~~~~~~~~~~~~~l~~~~~~~~ 263 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQA--TGARPVVDLGLDERNAYASVWTVSSGLVR 263 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHH--TTEEESSCGGGSGGGCEEEEEEEEHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHhCCCcCEEEEcchhHHHHHh--CCCEEEEeCcccCCCCceEEEEEcHHHHH
Confidence 26889999999999988887665544 2355543321 11 123455553
Q ss_pred CCC-chHH----HHHHHHhhhccc-cHHHHHHhhcc
Q 003167 685 DSP-LAID----MSTAILTLSENG-ELQRIHDKWLR 714 (843)
Q Consensus 685 ~sp-l~~~----in~~i~~l~e~G-~~~~~~~kw~~ 714 (843)
..| +... +.++...+.++. ...++..++++
T Consensus 264 ~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 264 QRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 344 4444 444555555542 44455555543
No 202
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=88.70 E-value=2.2 Score=43.79 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCC----C--CCCceEEcCCChHHhHHHHHHHHHHc--CCc
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSP----L--QYPFFVQTAPNDLYLMSAIAEMVSYF--GWG 73 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~----~--~~p~~fR~~p~d~~~~~ai~~ll~~~--~w~ 73 (843)
++++++||+ ..+..+.+++.. ..++|+|-.+-++|.-.. . .-+++.-+. +........++++++ +.+
T Consensus 67 ~~~~DlIia-i~t~aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k 141 (302)
T 3lkv_A 67 GENPDVLVG-IATPTAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVK 141 (302)
T ss_dssp TTCCSEEEE-ESHHHHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCC
T ss_pred hcCCcEEEE-cCCHHHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCC
Confidence 467888885 344555555543 457999887777765432 1 124454443 222234455666553 789
Q ss_pred EEEEEEecCCC-CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 74 EVIAIFNDDDQ-GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 74 ~v~ii~~d~~~-g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
+|+++|...+- .....+.+++.+++.|++++.... . +..++...++.+. .+.+++++..+..
T Consensus 142 ~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~--~----~~~~~~~~~~~l~-~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 142 SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA--L----KSADVQSATQAIA-EKSDVIYALIDNT 204 (302)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC--S----SGGGHHHHHHHHH-TTCSEEEECSCHH
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEec--C----ChHHHHHHHHhcc-CCeeEEEEeCCcc
Confidence 99999976543 345678888999999999875432 1 2566777776665 5688888766543
No 203
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=87.67 E-value=15 Score=37.50 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.9
Q ss_pred eeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEecee
Q 003167 376 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 455 (843)
Q Consensus 376 ~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~ 455 (843)
+||||+.. .+. ..+...++..+.+..+ .++++... ++...++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (313)
T 2h98_A 91 TLRIGYVS--SLL------------YGLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLK 148 (313)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSC
T ss_pred EEEEEech--HhH------------HhHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCC
Confidence 78999874 111 1345678888888775 35566654 55789999999999999987432
Q ss_pred eecCcceeeeecccccccceEEEEeccC
Q 003167 456 IVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 456 i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. ...+ -..|+....++++++...
T Consensus 149 ~~---~~~l-~~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 149 IT---DPAI-RRIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp CC---CTTE-EEEEEEEEEEEEEEETTS
T ss_pred CC---CCCe-eEEEeeeCcEEEEEcCCC
Confidence 21 1122 245677788888887654
No 204
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=87.28 E-value=1.8 Score=45.33 Aligned_cols=150 Identities=13% Similarity=0.027 Sum_probs=85.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCC--CCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPL--QYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~--~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~ 80 (843)
.++.+||.-..........+.+.+.+++.|-+++....-... .... +.+..++..-+..+++.|...|-++++.|..
T Consensus 86 ~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isg 164 (371)
T 3qi7_A 86 KEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYAS 164 (371)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEE
T ss_pred CCCeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEec
Confidence 356666654333222333455665566655444422111000 0011 2344455555556778999999999999987
Q ss_pred cCC--C--CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH-H--------hc-CCCeEEEEEcChhhHHH
Q 003167 81 DDD--Q--GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK-V--------RM-MEARVIVVHGYSRTGLM 146 (843)
Q Consensus 81 d~~--~--g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~-i--------~~-~~~~viv~~~~~~~~~~ 146 (843)
... + .....+.+++++++.|+.+.....-.+. .+..+. ..++ | +. ..+++ |++++...+..
T Consensus 165 p~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~~-~a~~lL~~~~~~~~~~~~~~TA-IFatND~mAiG 239 (371)
T 3qi7_A 165 TDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDKN-KVKQFLNEDIEKQVKKYGKDIN-VFGVNEYMDEV 239 (371)
T ss_dssp TTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHHH-HHHHHHHHHHHHHHHHHCSCCE-EEESSHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHHH-HHHHHHhccccchhhccCCCcE-EEECCHHHHHH
Confidence 442 2 2336788999999999987654322122 122222 2222 2 22 23344 56677788889
Q ss_pred HHHHHHHcCCcc
Q 003167 147 VFDVAQRLGMMD 158 (843)
Q Consensus 147 i~~~a~~~g~~~ 158 (843)
+++++.+.|...
T Consensus 240 ~ikal~e~Gi~V 251 (371)
T 3qi7_A 240 ILTKALELKYIV 251 (371)
T ss_dssp HHHHHHHHCCBB
T ss_pred HHHHHHHcCCcc
Confidence 999999999754
No 205
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=86.22 E-value=4.8 Score=42.89 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCc--chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 139 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 139 (843)
.+.++++.+|.+++.+|+....+.. +..+.+.+.|++.|+++.....+.++ .+...+...+..+++.++|+||-.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 100 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTVG 100 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3566777788899999987665555 57999999999999887543334444 5577888889999999999999776
Q ss_pred Ch--hhHHHHHHHH
Q 003167 140 YS--RTGLMVFDVA 151 (843)
Q Consensus 140 ~~--~~~~~i~~~a 151 (843)
.+ -|+.+++...
T Consensus 101 GGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 101 GGSPHDCGKGIGIA 114 (387)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHH
Confidence 54 4666665544
No 206
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=85.87 E-value=7.4 Score=39.76 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=52.9
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++||||+.. .. ...+...++..+.+..+ .+.++... ++...++.+|.+|++|+++...
T Consensus 105 ~~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 162 (315)
T 1uth_A 105 RTFNLAMTD--IG------------EMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLL 162 (315)
T ss_dssp CEEEEECCH--HH------------HHHHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECC
T ss_pred eEEEEEech--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecC
Confidence 578998863 11 01234567777877775 35566654 4466889999999999998643
Q ss_pred eeecCcceeeeecccccccceEEEEeccC
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.. ....+. ..|+....++++++...
T Consensus 163 ~~---~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 163 PE---LQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp TT---CCTTEE-EEEEEEECEEEEEETTC
T ss_pred CC---CCCCce-EEEeeccceEEEEeCCC
Confidence 21 111222 35677788888887654
No 207
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=85.49 E-value=0.62 Score=49.28 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhcc--cccccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 509 VVGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 509 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
+.+++.+.+++..+++ ...++.+++|+++.++..-| .-.|.+..+|++.+++.++++++.+...+.+++.+..
T Consensus 142 ~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 142 AVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777643221 12468899999999998776 3378899999999999999999999999998877653
No 208
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=85.40 E-value=2 Score=43.64 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCCeEEEE-eCchHHHHHH---HhhCCCCcceEeCC-CHHHHHHHHhcCCcEEEEcChhhHHHHHhcC
Q 003167 601 SNDRVGYQ-VGSFAENYLI---EELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDH 663 (843)
Q Consensus 601 ~~~~i~~~-~~~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~ 663 (843)
.|++|++. .|+....+++ ++.++ ..+++... ++.+...++.+|++||.+...+++.....+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 48899985 5665444332 34466 34555555 6899999999999999998888887765554
No 209
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=84.94 E-value=17 Score=35.53 Aligned_cols=118 Identities=8% Similarity=0.030 Sum_probs=60.0
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHH---HhhCC------------------CC--cceEeCCCHHHHHHHHhcCCc
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLI---EELSI------------------PK--SRLVALGSPEEYAIALENRTV 646 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~---~~~~~------------------~~--~~~~~~~~~~~~~~~l~~g~~ 646 (843)
..|++++||. .|.+|++..++....... +..|+ .. -+++.+ ...+...++ +.+
T Consensus 90 ~kiksl~dL~-~G~~Iaip~d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~~l-~~~~~~~al--~~V 165 (241)
T 1xs5_A 90 RTYRHVSDFP-AGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQEV-ESALLPRVF--DQV 165 (241)
T ss_dssp SSCCSGGGCC-TTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEE-CGGGHHHHG--GGS
T ss_pred CCCCChHHcC-CCCEEEEeCCCchHHHHHHHHHHCCCEEecCCCCCccChhhhhcCCCceEEEEe-CHHHHHHhh--hcc
Confidence 5799999994 388999998775543322 33343 11 233343 344555666 579
Q ss_pred EEEEcChhhHHHHHhcCC--CeEEeCCccccCcceeeecCCCCchHHHHHHHHhhhccccHHHHHHhh
Q 003167 647 AAVVDERPYIDLFLSDHC--QFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQRIHDKW 712 (843)
Q Consensus 647 ~a~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~kw 712 (843)
||.+...+++... .... +.....+.-.+....++++++.-=.+.+.+.+..+......+.|.++|
T Consensus 166 Daa~i~~~~a~~a-gl~~~~~~l~~e~~~~~~~nviv~r~~~~~~~~vk~l~~a~~s~~v~~~i~~~~ 232 (241)
T 1xs5_A 166 DGAVINGNYAIMA-GLSARRDGLAVEPDASAYANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERY 232 (241)
T ss_dssp SEEEECHHHHHHT-TCCTTTTCSEECSCGGGGCEEEEEETTCTTCHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred CEEEECcHHHHHc-CCCcccceEEEcCCCCceEEEEEEECCccChHHHHHHHHHHCCHHHHHHHHHhc
Confidence 9998777665321 1121 122223222222334667665322233333333333333444555554
No 210
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=84.55 E-value=1.5 Score=45.08 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=49.3
Q ss_pred cchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecc
Q 003167 532 QIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 587 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (843)
++.+++||++.++.--|. -.|.+..+|++.+++.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999997763 37888999999999999999999999999998887654
No 211
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=84.02 E-value=27 Score=35.30 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=54.9
Q ss_pred eeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEecee
Q 003167 376 QLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIA 455 (843)
Q Consensus 376 ~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~ 455 (843)
+||||+.. .+. ..+..+++..+.+..+ .++++... ++.+.++.+|.+|++|+++....
T Consensus 91 ~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~ 148 (312)
T 2h9b_A 91 TIRIGFVG--SLL------------FGLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLK 148 (312)
T ss_dssp EEEEEECG--GGG------------GTTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSC
T ss_pred eEEEEech--hhh------------HhhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCC
Confidence 78999874 111 1345678888888764 35566655 55789999999999999987432
Q ss_pred eecCcceeeeecccccccceEEEEeccC
Q 003167 456 IVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 456 i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
... ..+ -+.|+....++++++...
T Consensus 149 ~~~---~~l-~~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 149 ISD---PAI-KHSLLRNERLMVAVHASH 172 (312)
T ss_dssp CCC---TTE-EEEEEEEEEEEEEEETTS
T ss_pred CCC---CCc-eEEEeecceEEEEEcCCC
Confidence 211 112 235777788888887654
No 212
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=83.73 E-value=3 Score=44.37 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
..+.++++.+|.+++.+|+...-...+..+.+.+.|++.|+.+.....+.++ .+...+...+..+++.++|+||-.+.
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 3466677888999999999765443446888999999999887544455555 56788888899999999999998776
Q ss_pred h--hhHHHHHHHHH
Q 003167 141 S--RTGLMVFDVAQ 152 (843)
Q Consensus 141 ~--~~~~~i~~~a~ 152 (843)
+ -|+.+++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 5 45666665544
No 213
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=83.56 E-value=5.7 Score=40.84 Aligned_cols=88 Identities=9% Similarity=0.086 Sum_probs=54.8
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |++|.+.........+ +.+|.. -++. ...|...+|++|.+|+.....+.+.-. ..+-.++..
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~ 205 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGAS---PTPM-AFSEVYLALQTNAVDGQENPLAAVQAQKFYEVQKFLA 205 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHTTSSSEEEEEHHHHHHTTGGGSCSEEE
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceEeccHHHHhhcchhhccceEE
Confidence 6899999995 9999887544344555 567643 2333 567899999999999998876655221 112235444
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
..... .....+++.+.
T Consensus 206 ~~~~~-~~~~~~~~n~~ 221 (312)
T 2xwv_A 206 MTNHI-LNDQLYLVSNE 221 (312)
T ss_dssp CCCCC-EEEEEEEEEHH
T ss_pred ecCcc-ccceEEEEeHH
Confidence 33322 22334555554
No 214
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=83.51 E-value=3.8 Score=40.76 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=55.8
Q ss_pred eeeccccCCCCChHHhhhC--CCeEEEEeCchHHHHHH---Hhh-CCCCcceEeCCCHHH----HHHHHhcCCcEEEEcC
Q 003167 583 LTVQQLSSPIKGIDTLMTS--NDRVGYQVGSFAENYLI---EEL-SIPKSRLVALGSPEE----YAIALENRTVAAVVDE 652 (843)
Q Consensus 583 Lt~~~~~~~i~s~~dL~~~--~~~i~~~~~~~~~~~l~---~~~-~~~~~~~~~~~~~~~----~~~~l~~g~~~a~~~~ 652 (843)
|.++++. .|+|++||.+. ++.+|...|........ +.+ ++..-+++. .+... ..+++++|+.+++..-
T Consensus 88 l~Vp~~~-~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w 165 (256)
T 3l6g_A 88 FVVPSYM-NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVP-SSSGAMTVALGEAIKQHKDIVITGW 165 (256)
T ss_dssp EEEETTS-CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEEC-CCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEECCcc-CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHhcCCCCCeEEec-CCHHHHHHHHHHHHHCCCCEEEEee
Confidence 4444444 89999999532 56678887875443221 445 554223332 23332 3478888999999887
Q ss_pred hhhHHHHHhcCCCeEEeCCccc----cCcceeeecCC
Q 003167 653 RPYIDLFLSDHCQFSVRGQEFT----KSGWGFAFPRD 685 (843)
Q Consensus 653 ~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~k~ 685 (843)
.+....- ++ +++++.++-. ......+++++
T Consensus 166 ~p~~~~~--~~-~l~~LeDpk~~~~~~~~~~~vvr~~ 199 (256)
T 3l6g_A 166 SPHWMFN--KY-DLKYLADPKGTMGTSENINTIVRKG 199 (256)
T ss_dssp ESCTHHH--HS-CEEECBCTTCTTCCCEEEEEEEETT
T ss_pred cCchhhh--hc-CeEEecCCccccCCcceEEEeechh
Confidence 7765543 22 5666654322 22334555665
No 215
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=83.24 E-value=31 Score=34.01 Aligned_cols=71 Identities=14% Similarity=0.049 Sum_probs=46.2
Q ss_pred eHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcc-eeeeecccccccceEEEEecc
Q 003167 404 CIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT-KAVDFTQPYIESGLVVVAPVR 482 (843)
Q Consensus 404 ~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~-~~vdfs~p~~~~~~~~~v~~~ 482 (843)
-.+++..+.++.+ .++++... ++..+++.+|.+|++|+++........+. ..+. ..|+....+++++++.
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~ 112 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQA 112 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCC
Confidence 3567788888773 24455554 55788999999999999987433222110 1222 3577788888888765
Q ss_pred C
Q 003167 483 K 483 (843)
Q Consensus 483 ~ 483 (843)
.
T Consensus 113 ~ 113 (290)
T 1twy_A 113 N 113 (290)
T ss_dssp C
T ss_pred C
Confidence 5
No 216
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=82.89 E-value=3.3 Score=42.96 Aligned_cols=88 Identities=16% Similarity=0.029 Sum_probs=55.1
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |++|.+..+......+ +.+|.. .++. ...|...+|++|.+|+.....+.+.-. +.+-.++..
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~G~VDg~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAI---PVAV-NFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSE---EECC-CGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCE---eeec-CHHHHHHHHHcCCeeEEECCHHHHHHcChhhhccEEE
Confidence 6899999995 9999887544455566 567643 2222 567899999999999999765544211 112234443
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
..... .....+++++.
T Consensus 221 ~~~~~-~~~~~~~~n~~ 236 (327)
T 2hpg_A 221 ETGHF-LLINFEIVSAD 236 (327)
T ss_dssp EEEEE-EEEEEEEEEHH
T ss_pred ecCcc-hhceEEEEeHH
Confidence 32222 23455666665
No 217
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=82.67 E-value=6.1 Score=39.64 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCC-----CCChhHHHHHHHHHhcCCCeE
Q 003167 60 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMMEARV 134 (843)
Q Consensus 60 ~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~i~~~~~~v 134 (843)
+.++++.++..|-++|+++. .|.....+.+.+.+++.|+++.......... ..+...+...+.++...++|+
T Consensus 134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gada 210 (273)
T 2xed_A 134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDA 210 (273)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSE
T ss_pred HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCE
Confidence 45666667778889999996 4666667789999999999987655433210 012345666666776678888
Q ss_pred EEEE-cChh
Q 003167 135 IVVH-GYSR 142 (843)
Q Consensus 135 iv~~-~~~~ 142 (843)
||+. |..-
T Consensus 211 IvLg~CT~l 219 (273)
T 2xed_A 211 LVISCAVQM 219 (273)
T ss_dssp EEEESSSSS
T ss_pred EEEcCCCCc
Confidence 8887 6543
No 218
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=82.20 E-value=2.3 Score=47.16 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=54.1
Q ss_pred HHHHhhhhhcccCCCCCCCCcccchhhHHHHHHHHhhccc--ccccccchhHHHHHHHHHHHHHHhhhhcceeeeeee
Q 003167 510 VGTVVWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHR--ENTVSTLGRVVLIIWLFVVLIITSSYTASLTSILTV 585 (843)
Q Consensus 510 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 585 (843)
.+.+++..+... ......++..++|+++.++..-|. -.|.+..+|++.+++.++++++.+.+.|.+.+-+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555432 223445789999999999987763 368888899999999999999999999988875543
No 219
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=81.64 E-value=6.9 Score=39.44 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=54.7
Q ss_pred eeeccccCCCCChHHhhhCC-----CeEEEEeCchHH----HHHHHhhCCC-CcceEeCCCHH----HHHHHHhcCCcEE
Q 003167 583 LTVQQLSSPIKGIDTLMTSN-----DRVGYQVGSFAE----NYLIEELSIP-KSRLVALGSPE----EYAIALENRTVAA 648 (843)
Q Consensus 583 Lt~~~~~~~i~s~~dL~~~~-----~~i~~~~~~~~~----~~l~~~~~~~-~~~~~~~~~~~----~~~~~l~~g~~~a 648 (843)
|.++++. .|+|++||.+.. +.+|...|+... ..+ +.+++. .-+++. .+.. +..+++++|+.++
T Consensus 102 l~V~~~~-~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l-~~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~~~v 178 (280)
T 3tmg_A 102 FVVPSYV-PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQAL-NYYGLSKEYELVP-SSESVMLASLDSSIKRNEWIL 178 (280)
T ss_dssp EEEETTS-CCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHH-HHTTCTTTSEEEC-CCHHHHHHHHHHHHHTTCCCC
T ss_pred EEECCCC-CCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHH-HhcCCCCceEEEe-CCHHHHHHHHHHHHHCCCCEE
Confidence 3344433 799999997532 346666666432 333 567874 234442 2333 3347888899998
Q ss_pred EEcChhhHHHHHhcCCCeEEeCCccc---c-CcceeeecCC
Q 003167 649 VVDERPYIDLFLSDHCQFSVRGQEFT---K-SGWGFAFPRD 685 (843)
Q Consensus 649 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~~k~ 685 (843)
+..-.+....- + -+++++.++-. + .....+++++
T Consensus 179 ~~~w~p~~~~~--~-~~l~~LeD~k~~~~p~~~~~~vvr~~ 216 (280)
T 3tmg_A 179 VPLWKPHWAFS--R-YDIKFLDDPDLIMGGIESVHTLVRLG 216 (280)
T ss_dssp EEEEESCTHHH--H-SCEEECBCTTCTTCSSEEEEEEEETT
T ss_pred EEEecCchhhh--c-CCeEEecCccccCCCcceEEEEeccc
Confidence 88776665443 2 25777654322 2 2334555665
No 220
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=81.37 E-value=3.3 Score=42.29 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCCChHHhhhC-----CCeEEEEeCchHHHH----HH-HhhCCCCcceEeCCCHH----HHHHHHhcCCcEEEEcChhhH
Q 003167 591 PIKGIDTLMTS-----NDRVGYQVGSFAENY----LI-EELSIPKSRLVALGSPE----EYAIALENRTVAAVVDERPYI 656 (843)
Q Consensus 591 ~i~s~~dL~~~-----~~~i~~~~~~~~~~~----l~-~~~~~~~~~~~~~~~~~----~~~~~l~~g~~~a~~~~~~~~ 656 (843)
.|+|++||.+. |+.+|...|+....+ |+ +.+++...+++. .+.. +...++.+|+.+++....+..
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~g~~~v~~~w~p~~ 182 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKSGDPIVFLGWEPHP 182 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHCCCCEEEEEeccCc
Confidence 78999999632 677888777755332 32 256764334443 2332 335677789999998877764
Q ss_pred H
Q 003167 657 D 657 (843)
Q Consensus 657 ~ 657 (843)
.
T Consensus 183 ~ 183 (298)
T 2rin_A 183 M 183 (298)
T ss_dssp H
T ss_pred h
Confidence 3
No 221
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=80.38 E-value=5.2 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=42.7
Q ss_pred CCCChHHhh--h-----------CCCeEEEEeCchHHHHH---HHhhCCCCcceEeCCC-H----HHHHHHHhcCCcEEE
Q 003167 591 PIKGIDTLM--T-----------SNDRVGYQVGSFAENYL---IEELSIPKSRLVALGS-P----EEYAIALENRTVAAV 649 (843)
Q Consensus 591 ~i~s~~dL~--~-----------~~~~i~~~~~~~~~~~l---~~~~~~~~~~~~~~~~-~----~~~~~~l~~g~~~a~ 649 (843)
+|+|++||. + .++.+|+..|+.....+ .+.+++.. .+..... . .+...++++|+.+++
T Consensus 107 ~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~-~~~~~~~s~~~~~~~~~~A~~~g~~~v~ 185 (309)
T 1r9l_A 107 KITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN-TVTHNQGNYAAMMADTISRYKEGKPVFY 185 (309)
T ss_dssp TCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTT-TEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCC-ceEEcCCCHHHHHHHHHHHHHCCCCEEE
Confidence 789999996 1 02456777777654422 24667764 3443333 2 256678889999999
Q ss_pred EcChhhHHH
Q 003167 650 VDERPYIDL 658 (843)
Q Consensus 650 ~~~~~~~~~ 658 (843)
..-.+....
T Consensus 186 ~~w~P~~~~ 194 (309)
T 1r9l_A 186 YTWTPYWVS 194 (309)
T ss_dssp EEEESSSHH
T ss_pred EeecCchHh
Confidence 887776544
No 222
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=79.36 E-value=3.8 Score=42.22 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=55.8
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |.+|.+..+......+ +.+|.. .++. ...|...+|++|.+|+.....+.+.-. +.+-.++..
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa~---pv~m-~~~Evy~ALq~G~VDg~~~~~~~~~~~~~~ev~~y~~ 202 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGAT---PTPL-PWGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPNLT 202 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCE---EEEC-CGGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCEEE
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceeeCCHHHHHhcCHHHhhhhhe
Confidence 6899999995 9999887666556666 567643 3333 567899999999999998654443211 112334444
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
.... ......+++++.
T Consensus 203 ~~~~-~~~~~~~~~n~~ 218 (316)
T 2vpn_A 203 FTSH-GWFTTAMMANQD 218 (316)
T ss_dssp ECCC-CEEEEEEEEEHH
T ss_pred eccc-cccceEEEEcHH
Confidence 3322 223455666665
No 223
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=79.33 E-value=44 Score=31.79 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=56.3
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+||||+.. .+. ..+..+++..+.+..+ .++++... ++..+++.+|.+|++|+++..
T Consensus 26 ~g~l~Ig~~~--~~~------------~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~ 83 (238)
T 3onm_A 26 EGSLIIGASD--DTA------------DTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITT 83 (238)
T ss_dssp -CCEEEEECH--HHH------------TTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEEC
T ss_pred ceeEEEeccc--hhh------------HHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEe
Confidence 3579999874 111 1345678888888775 35566655 568899999999999999874
Q ss_pred eeeecCcceeeeecccccccceEEEEeccC
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
... .. --+.++....+++++++..
T Consensus 84 ~~~-----~~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 84 AKV-----DS-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp SCC------C-CCEEEEEEECEEEEEETTC
T ss_pred cCC-----CC-cceEEeecCCEEEEEcCCC
Confidence 321 11 2356778888888888765
No 224
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=78.60 E-value=50 Score=34.30 Aligned_cols=70 Identities=9% Similarity=0.028 Sum_probs=43.6
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCChHHHHHHHH-cC-cccEEEeceeeecCcc---eeeeecccccccceEEE
Q 003167 405 IDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQIT-TG-VFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVVV 478 (843)
Q Consensus 405 ~dl~~~i~~~l-~f~~~~~~~~~~~~~~n~~~~~~i~~l~-~g-~~Di~~~~~~i~~~r~---~~vdfs~p~~~~~~~~~ 478 (843)
-++.+.+.++. |.++++.+- .-..+..++. .| .+|+.+..-.-..++. ...+...+|....++++
T Consensus 58 ~~l~~~Fe~~~pgv~V~~~~g---------gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVli 128 (354)
T 3k6v_A 58 EELEAEFEAQHPGVDVQREAA---------GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 128 (354)
T ss_dssp HHHHHHHHHHSTTCEEEEEEE---------CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCcEEEEEeC---------CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEE
Confidence 36777788887 877665542 3456788885 35 6898876321111111 12344567888889999
Q ss_pred EeccC
Q 003167 479 APVRK 483 (843)
Q Consensus 479 v~~~~ 483 (843)
+|+..
T Consensus 129 v~~~~ 133 (354)
T 3k6v_A 129 YTNES 133 (354)
T ss_dssp ECTTS
T ss_pred EECCC
Confidence 98765
No 225
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=78.54 E-value=3.4 Score=39.00 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 374 GRQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 374 g~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..+||||+.. .+ ...+-.+++..+.++.+ .++++... . ..+.+|.+|++|+++..
T Consensus 6 ~g~l~Ig~~~--~~------------~~~~l~~~l~~f~~~~P-~v~l~i~~-------~---~~~~~l~~g~~D~~i~~ 60 (213)
T 3hhf_B 6 QGVLSVDSAM--PM------------VLHLLAPLAAKFNERYP-HIRLSLVS-------S---EGYINLIERKVDIALRA 60 (213)
T ss_dssp CEEEEEEECH--HH------------HHHTHHHHHHHHHHHCT-TEEEEEEC-------C---STTHHHHTTSSSEEEEC
T ss_pred CceEEEecCH--HH------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------C---CcHHHHHhCCccEEEEE
Confidence 3578888874 11 11345678888888775 25555542 1 11345889999999874
Q ss_pred eeeecCcceeeeecccccccceEEEEeccC
Q 003167 454 IAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 454 ~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
..... ..+ -+.++....+++++++..
T Consensus 61 ~~~~~---~~~-~~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 61 GELDD---SGL-RARHLFDSRFRVIASPEY 86 (213)
T ss_dssp C--CC---SSE-EEEEEEEECEEEEECHHH
T ss_pred ecCCC---ccc-eEEeeecceEEEEeCHHH
Confidence 33221 222 246778888888887654
No 226
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=76.77 E-value=3.6 Score=43.81 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=69.4
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 126 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 126 (843)
|+-+...+... ..+.++++.+|.+++.+|+.......+..+.+.+.|++.|+++.....+.++ .+...+...+..
T Consensus 9 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~ 83 (386)
T 1rrm_A 9 NETAWFGRGAV---GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGV 83 (386)
T ss_dssp CSEEEESTTGG---GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHH
Confidence 44444444433 2356677778889999998654443457888999999999887544445444 557788888899
Q ss_pred HhcCCCeEEEEEcCh--hhHHHHHHHHH
Q 003167 127 VRMMEARVIVVHGYS--RTGLMVFDVAQ 152 (843)
Q Consensus 127 i~~~~~~viv~~~~~--~~~~~i~~~a~ 152 (843)
+++.++|+||-.+.+ -|+..++....
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 84 FQNSGADYLIAIGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHTCSEEEEEESHHHHHHHHHHHHHH
T ss_pred HHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 999999999977653 46666665544
No 227
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=76.57 E-value=21 Score=37.34 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccC-CCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHHHHH-H-cCCcEEEEE
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANEL-QVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAEMVS-Y-FGWGEVIAI 78 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~-~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~ll~-~-~~w~~v~ii 78 (843)
++++..||+.. .....++..++.++ ++|++-..... .. |++-... .+..++..++-.+. . -+-++|++|
T Consensus 84 ~~g~d~Ii~~g-~~~~~~~~~vA~~~Pdv~fv~id~~~---~~---~Nv~sv~-~~~~eg~ylaG~~A~~~tk~~kIGfV 155 (356)
T 3s99_A 84 RAGNKLIFTTS-FGYMDPTVKVAKKFPDVKFEHATGYK---TA---DNMSAYN-ARFYEGRYVQGVIAAKMSKKGIAGYI 155 (356)
T ss_dssp HTTCSEEEECS-GGGHHHHHHHHTTCTTSEEEEESCCC---CB---TTEEEEE-ECHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HCCCCEEEECC-HHHHHHHHHHHHHCCCCEEEEEeccc---cC---CcEEEEE-echhHHHHHHHHHHHHhcCCCEEEEE
Confidence 35788888864 34456677777776 78888654321 11 2222222 22345554444331 1 124799999
Q ss_pred EecC-CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 79 FNDD-DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 79 ~~d~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
.... +........|.+.++..+..+.....+.... .+...-......+.+.++|+|+.+.... .++++|++.|.
T Consensus 156 gg~~~p~v~~~~~GF~~G~k~~np~i~v~~~~~g~~-~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 156 GSVPVPEVVQGINSFMLGAQSVNPDFRVKVIWVNSW-FDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCTTCEEEEEECSSS-CCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 8633 2223456778888887765543333332110 1123334455666667999988876653 57888988773
No 228
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=75.61 E-value=9.3 Score=36.91 Aligned_cols=80 Identities=5% Similarity=-0.111 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCC-----CCChhHHHHHHHHHhcC--CC
Q 003167 60 MSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-----SVTETDVRNELVKVRMM--EA 132 (843)
Q Consensus 60 ~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~~~d~~~~l~~i~~~--~~ 132 (843)
..++++.++..|-++|+++. .|+....+.+.+.+++.|+++.......... ......+...+.++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 57777777778889999996 4666667788889999999986554433210 01234455566666556 78
Q ss_pred eEEEEEcChh
Q 003167 133 RVIVVHGYSR 142 (843)
Q Consensus 133 ~viv~~~~~~ 142 (843)
|+||+.|..-
T Consensus 173 daIvLgCT~l 182 (223)
T 2dgd_A 173 DAVYIACTAL 182 (223)
T ss_dssp SEEEECCTTS
T ss_pred CEEEEeCCcc
Confidence 8888876543
No 229
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=75.59 E-value=12 Score=37.72 Aligned_cols=102 Identities=10% Similarity=0.034 Sum_probs=63.1
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeC
Q 003167 591 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRG 670 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~ 670 (843)
++++++|| .+.+|+...-.....|| .+.+.. .+++.....-|.. -..|-.|++++-.....-+.++ +|..++
T Consensus 120 ~~~~~~~l--~~~RIATkYp~l~r~yf-~~~gi~-~~Ii~l~GsvE~a--P~~GlADaIvDiVsTG~TLraN--gL~~i~ 191 (304)
T 1nh8_A 120 RNWTTADL--AGMRIATAYPNLVRKDL-ATKGIE-ATVIRLDGAVEIS--VQLGVADAIADVVGSGRTLSQH--DLVAFG 191 (304)
T ss_dssp SCCCGGGG--TTCEEEESCHHHHHHHH-HHHTCC-CEEEECSSCCTHH--HHTTSCSEEEEEESSSHHHHHT--TEEEEE
T ss_pred CcCChHHh--CCCEEEeCcHHHHHHHH-HHCCCe-EEEEECCCceeec--cCCCcccEEEEEeCChHHHHHC--cCEEcc
Confidence 45678888 48899998888889999 456665 4555444333322 3347789998877666665443 577775
Q ss_pred CccccCcceeeecCCCC-c--hHHHHHHHHhhh
Q 003167 671 QEFTKSGWGFAFPRDSP-L--AIDMSTAILTLS 700 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp-l--~~~in~~i~~l~ 700 (843)
+.+....-.+..+|.+. . .+.++..+.++.
T Consensus 192 e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 192 EPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred cEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 55555566677777752 2 235666665554
No 230
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=75.53 E-value=6.9 Score=41.93 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
.+.++++.+|.+++.+|+.+...-. +..+.+.+.|++.|+++.....+.++ .+...+...+..+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3566777788899999985443333 46888999999999876533333333 45678888889999999999997765
Q ss_pred h--hhHHHHHHHH
Q 003167 141 S--RTGLMVFDVA 151 (843)
Q Consensus 141 ~--~~~~~i~~~a 151 (843)
+ -|+.+++...
T Consensus 111 GsviD~AK~iA~~ 123 (407)
T 1vlj_A 111 GSVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4 4566555443
No 231
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=75.18 E-value=8.1 Score=38.48 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=40.1
Q ss_pred hHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcC-hhhHH
Q 003167 595 IDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDE-RPYID 657 (843)
Q Consensus 595 ~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~-~~~~~ 657 (843)
++||. |++||+..++....++.+.+- ...+++.. ...+...++.+|++||.+.. .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHCCCCCEEEEecchhhh
Confidence 67884 999999876655555434332 12244444 45588999999999999875 66665
No 232
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=75.03 E-value=36 Score=34.88 Aligned_cols=82 Identities=7% Similarity=-0.124 Sum_probs=52.6
Q ss_pred eCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeecCCCCchHHHHHHHHhhhccccHHH
Q 003167 630 ALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTLSENGELQR 707 (843)
Q Consensus 630 ~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~ 707 (843)
...+..+..+.+.+|++++.+.....+..+.....++..+-+ -......+++++++++-.+.--+.|..+........
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e~q~~ 294 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEK 294 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHHHHHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHHHHHH
Confidence 346778889999999999888776666555555444443321 112234578999999877666666666665444444
Q ss_pred HHHh
Q 003167 708 IHDK 711 (843)
Q Consensus 708 ~~~k 711 (843)
+.+.
T Consensus 295 ~~~~ 298 (351)
T 4edp_A 295 TAKA 298 (351)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 233
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=74.77 E-value=2.8 Score=41.96 Aligned_cols=67 Identities=7% Similarity=0.092 Sum_probs=50.2
Q ss_pred cchhhHHHHHHHHhhcccc--cccccc-------hhHHHHHHHHHHHHHHhhhhcceeeeeeeccccCCCCChHHh
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTL-------GRVVLIIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIDTL 598 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~-------~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~s~~dL 598 (843)
++.+++|+++.++.-.|.. .|.+.. .|++..+|.++++.+.+...+.+++.+...+....+..-+|+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5789999999999877643 455553 599999999999999999999999888777666555444443
No 234
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=74.60 E-value=10 Score=38.69 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=60.0
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
++|+++.. +++|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---N--GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 57888887 4788899999999999999998876432 2 23555667788888899999998876443 345777
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|.
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 8877664
No 235
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=74.30 E-value=15 Score=38.78 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=67.5
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELV 125 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~ 125 (843)
|+-+...+... ..+.++++.+| +++.+|+..+.+.. +..+.+.+.|++.|+++.....+.++ .+...+...+.
T Consensus 19 p~~i~~G~g~~---~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~ 92 (371)
T 1o2d_A 19 PTDVFFGEKIL---EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVE 92 (371)
T ss_dssp CCEEEESTTHH---HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHH
T ss_pred CceEEECcCHH---HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHH
Confidence 44444444332 33556667778 99999997645443 46889999999999876544444454 55788888899
Q ss_pred HHhcCCCeEEEEEcCh--hhHHHHHHHH
Q 003167 126 KVRMMEARVIVVHGYS--RTGLMVFDVA 151 (843)
Q Consensus 126 ~i~~~~~~viv~~~~~--~~~~~i~~~a 151 (843)
.+++.++|+||-.+.+ -|+..++...
T Consensus 93 ~~~~~~~d~IIavGGGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 93 RYRNDSFDFVVGLGGGSPMDFAKAVAVL 120 (371)
T ss_dssp HHTTSCCSEEEEEESHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCChHHHHHHHHHHHH
Confidence 9999999999977654 4555555443
No 236
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=74.05 E-value=17 Score=38.86 Aligned_cols=93 Identities=11% Similarity=0.038 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCCC--cchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh------hh
Q 003167 72 WGEVIAIFNDDDQG--RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS------RT 143 (843)
Q Consensus 72 w~~v~ii~~d~~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~------~~ 143 (843)
-++|+|+| ++.|| +..++.+.+.+.+.|++++........ ..+.+.++..+. +++.|++.+.. +.
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 35899999 66677 456899999999999987755544443 456677777764 56777776543 34
Q ss_pred HHHHHHHHHHcCCcccceEEEEeCcccc
Q 003167 144 GLMVFDVAQRLGMMDSGYVWIATTWLST 171 (843)
Q Consensus 144 ~~~i~~~a~~~g~~~~~~~~i~~~~~~~ 171 (843)
...++...............+++-+|+.
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 4556666666655444444566666653
No 237
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=73.80 E-value=4.8 Score=42.84 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=52.4
Q ss_pred cCCCCChHHhhhCCCeEEEEeCchHHHHHHH------hhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHH
Q 003167 589 SSPIKGIDTLMTSNDRVGYQVGSFAENYLIE------ELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFL 660 (843)
Q Consensus 589 ~~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~ 660 (843)
..+|++++||. | ||++.+...+.+... ..+.. .+++.|++..+++.+|.+|++||++.+..+...+.
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~~-~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le 97 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNTD-LTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIE 97 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCCC-CEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCCc-ceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHH
Confidence 37999999995 4 999988876665432 12322 46889999999999999999999999988766654
No 238
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=73.05 E-value=79 Score=31.55 Aligned_cols=70 Identities=11% Similarity=0.003 Sum_probs=44.9
Q ss_pred HHHHHHHHHHC-CCcccEEEEeCCCCCCCCChHHHHHHHHc-Cc-ccEEEeceeeec---CcceeeeecccccccceEEE
Q 003167 405 IDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVVV 478 (843)
Q Consensus 405 ~dl~~~i~~~l-~f~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~i~~---~r~~~vdfs~p~~~~~~~~~ 478 (843)
-++++.+.++. |.++++.+ ++...++.++.. |. +|+.+..-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~ 90 (295)
T 3cij_A 20 KAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLA 90 (295)
T ss_dssp HHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEE
Confidence 46777777774 86665544 346678899988 75 899876321111 11223345678888889998
Q ss_pred EeccC
Q 003167 479 APVRK 483 (843)
Q Consensus 479 v~~~~ 483 (843)
+++..
T Consensus 91 ~~~~~ 95 (295)
T 3cij_A 91 YRNDS 95 (295)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87764
No 239
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=72.58 E-value=63 Score=31.30 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=50.5
Q ss_pred EeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcc---eeeeecccccccceEE
Q 003167 401 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 477 (843)
Q Consensus 401 ~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 477 (843)
.|+.-+|+..+.++.+.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 366678888888888866555443 3567899999999999876443222211 1112246888889999
Q ss_pred EEeccC
Q 003167 478 VAPVRK 483 (843)
Q Consensus 478 ~v~~~~ 483 (843)
++|+..
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 998876
No 240
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=72.23 E-value=17 Score=33.47 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCCCc---chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC-CCeEEEEEcC
Q 003167 72 WGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 140 (843)
Q Consensus 72 w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~ 140 (843)
--+++||...|+-|+ .....+.+.+++.|.++.....++.+ ..++...+.+..+. ++|+||..+.
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 347899988777664 34677888999999999888777765 78888888887665 6899988764
No 241
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=71.86 E-value=5.2 Score=42.48 Aligned_cols=81 Identities=7% Similarity=0.123 Sum_probs=53.8
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 63 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 63 i~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
+.++++.+| +++.+|+....+. ...+.+.+.|++ |+.+.+ ..+..+ .+...+...+..+++.++|+||-.+.+.
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~-~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGGGs 117 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRF-ERFGGE--CCTSEIERVRKVAIEHGSDILVGVGGGK 117 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEE-EECCSS--CSHHHHHHHHHHHHHHTCSEEEEESSHH
T ss_pred HHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEE-EEcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCCcH
Confidence 566778889 9999998655543 367788888998 988744 345555 5577888888888889999999887654
Q ss_pred --hHHHHHH
Q 003167 143 --TGLMVFD 149 (843)
Q Consensus 143 --~~~~i~~ 149 (843)
|+.+++.
T Consensus 118 ~~D~AK~iA 126 (387)
T 3uhj_A 118 TADTAKIVA 126 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4444443
No 242
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=71.83 E-value=26 Score=32.88 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=59.9
Q ss_pred CCChHHhhhCCCeEEEEeCchHHHHHHHhhCCC---CcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEE
Q 003167 592 IKGIDTLMTSNDRVGYQVGSFAENYLIEELSIP---KSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSV 668 (843)
Q Consensus 592 i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~ 668 (843)
.-+++||.+.. -|....+.....++.+..... ......+++.+...+.+..|..-+++.+.....+...... ...
T Consensus 95 ~~~~~~L~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l-~~~ 172 (219)
T 3kos_A 95 IQTPADILKFP-LLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERI-VQP 172 (219)
T ss_dssp CSSGGGGGGSC-EEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSS-BCC
T ss_pred cCCHHHHhcCc-eeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCe-ecc
Confidence 45678886322 244555666666664432211 1234677899999999999887777766554444322222 122
Q ss_pred eCCccccCcceeeecCCCCchHHHHHHHHh
Q 003167 669 RGQEFTKSGWGFAFPRDSPLAIDMSTAILT 698 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~spl~~~in~~i~~ 698 (843)
..+......++++.+++.+....+...+..
T Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~ 202 (219)
T 3kos_A 173 FLTQIDLGSYWITRLQSRPETPAMREFSRW 202 (219)
T ss_dssp CCCCBCSCEEEEEEETTSCCCHHHHHHHHH
T ss_pred ccCCccCCcEEEEecccccCCHHHHHHHHH
Confidence 222333456788888887665555544433
No 243
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=71.50 E-value=8.2 Score=39.11 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=58.7
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
++|+++.. +++|.....+.+.+++++.|..+.... ... .+.......++.+.+.++|.||+..... .....++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 67888886 467788889999999999999887532 222 2355666778888888999999876543 3455778
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|+
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 244
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=70.55 E-value=14 Score=37.46 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHH
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYL 617 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l 617 (843)
..|++++||. .|.+|++..++.....+
T Consensus 126 ~~iksl~DL~-~Gk~IAip~~~s~~~~~ 152 (295)
T 1p99_A 126 DKIKDVKKVK-DGAKVVIPNDVSNQARA 152 (295)
T ss_dssp SSCSCGGGCC-TTCEEEEECSHHHHHHH
T ss_pred CCCCChHHcC-CCCEEEecCCCcHHHHH
Confidence 5799999994 38899999887655444
No 245
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=67.58 E-value=74 Score=31.75 Aligned_cols=70 Identities=10% Similarity=-0.025 Sum_probs=44.1
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCChHHHHHHHHc-Cc-ccEEEeceeeec---CcceeeeecccccccceEEE
Q 003167 405 IDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAIVT---NRTKAVDFTQPYIESGLVVV 478 (843)
Q Consensus 405 ~dl~~~i~~~-l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~i~~---~r~~~vdfs~p~~~~~~~~~ 478 (843)
-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.+..-.... .....++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi~ 90 (292)
T 3cfz_A 20 EEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVLA 90 (292)
T ss_dssp HHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEEE
Confidence 4677777777 475555433 346778899988 75 899876321111 11223445677888888988
Q ss_pred EeccC
Q 003167 479 APVRK 483 (843)
Q Consensus 479 v~~~~ 483 (843)
+++..
T Consensus 91 ~~~~~ 95 (292)
T 3cfz_A 91 YTDKS 95 (292)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 87654
No 246
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=67.45 E-value=58 Score=32.60 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHHHHHHHHH-CCCcccEEEEeCCCCCCCCChHHHHHHHHc-Cc-ccEEEeceee--e-cCcceeeeecccccccceEEE
Q 003167 405 IDVFLAAVRL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-GV-FDAAVGDIAI--V-TNRTKAVDFTQPYIESGLVVV 478 (843)
Q Consensus 405 ~dl~~~i~~~-l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~-g~-~Di~~~~~~i--~-~~r~~~vdfs~p~~~~~~~~~ 478 (843)
-++++.+.++ -|.++++.+ ++-..++.++.. |. +|+.+..-.. . ......++...||....++++
T Consensus 20 ~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~ 90 (296)
T 3cfx_A 20 EELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILA 90 (296)
T ss_dssp HHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEE
Confidence 4677777777 486655533 446778899988 65 8998763211 1 112223345667888888888
Q ss_pred EeccC
Q 003167 479 APVRK 483 (843)
Q Consensus 479 v~~~~ 483 (843)
+++..
T Consensus 91 ~~~~~ 95 (296)
T 3cfx_A 91 YTNES 95 (296)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 87654
No 247
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=66.11 E-value=16 Score=36.54 Aligned_cols=79 Identities=8% Similarity=-0.047 Sum_probs=59.1
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh-hhHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~i~~ 149 (843)
++|+++.. ++.|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+.... ......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---G--RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 57888887 4557778899999999999998876532 2 235556677888888899999987654 44556788
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|.
T Consensus 81 ~~~~~~i 87 (291)
T 3l49_A 81 KINDAGI 87 (291)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 248
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=66.01 E-value=12 Score=38.74 Aligned_cols=81 Identities=4% Similarity=0.002 Sum_probs=57.9
Q ss_pred CCcEEEEEEec---CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc--CCCeEEEEEcChhhHH
Q 003167 71 GWGEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM--MEARVIVVHGYSRTGL 145 (843)
Q Consensus 71 ~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~--~~~~viv~~~~~~~~~ 145 (843)
+-.+|+++..+ +.|.....+.+++++++.|..+.... .. .+.......+..+.+ .++|.||+........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~---~~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILY---AE--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEE---CC--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 34688999874 36788899999999999999887642 12 224444566777766 5999999986544556
Q ss_pred HHHHHHHHcCC
Q 003167 146 MVFDVAQRLGM 156 (843)
Q Consensus 146 ~i~~~a~~~g~ 156 (843)
.+++.+.+.|.
T Consensus 77 ~~~~~~~~~gi 87 (350)
T 3h75_A 77 QILRLSQGSGI 87 (350)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHhCCC
Confidence 67788877665
No 249
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=65.56 E-value=39 Score=33.94 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=62.2
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeC-CCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEe
Q 003167 591 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVAL-GSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 669 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 669 (843)
.+.++++| .+.+|+...-.....|| ++.+... .++.. .+.|-. -..|-.|++++-.....-+.++ +|..+
T Consensus 115 ~~~~~~~l--~g~RIATkyp~l~~~yf-~~~gi~~-~ii~l~GsvE~a---P~~GlADaIvDivsTG~TLraN--gL~~i 185 (299)
T 1h3d_A 115 AWDGPLSL--NGKRIATSYPHLLKRYL-DQKGISF-KSCLLNGSVEVA---PRAGLADAICDLVSTGATLEAN--GLREV 185 (299)
T ss_dssp CCCCGGGG--TTCEEEESCHHHHHHHH-HHHTCCC-EEEECSSCTTHH---HHTTSCSEEEEEESSCHHHHHT--TEEEE
T ss_pred CCCChHHh--CCCEEEeCcHHHHHHHH-HHcCCcE-EEEECCCceeec---cCCCccceEEecccCHHHHHHC--CCEEe
Confidence 45667777 48899988888889999 4566663 44444 444432 3347788998877666655444 46666
Q ss_pred CCccccCcceeeecCCC--Cc-hHHHHHHHHhhh
Q 003167 670 GQEFTKSGWGFAFPRDS--PL-AIDMSTAILTLS 700 (843)
Q Consensus 670 ~~~~~~~~~~~~~~k~s--pl-~~~in~~i~~l~ 700 (843)
+..+ ...-.+..+|.+ +. .+.++..+.++.
T Consensus 186 e~I~-~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 186 EVIY-RSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEE-EECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EEEE-eeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 5444 445556667776 22 245666666554
No 250
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=65.17 E-value=17 Score=36.48 Aligned_cols=84 Identities=7% Similarity=-0.057 Sum_probs=59.8
Q ss_pred CCcEEEEEEec---CCCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHH
Q 003167 71 GWGEVIAIFND---DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGL 145 (843)
Q Consensus 71 ~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~ 145 (843)
+-++|+++..+ +.|.......+++++++. |..+......... .+.......++.+.+.++|.||+..... ...
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 44678888764 567788899999999988 7776654432222 2355667778888889999999887644 345
Q ss_pred HHHHHHHHcCC
Q 003167 146 MVFDVAQRLGM 156 (843)
Q Consensus 146 ~i~~~a~~~g~ 156 (843)
..++.+.+.|+
T Consensus 85 ~~~~~~~~~~i 95 (304)
T 3gbv_A 85 GFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHCCC
Confidence 66777777675
No 251
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=64.42 E-value=18 Score=38.06 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=69.3
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 126 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 126 (843)
|+-+...+... ..+.++++.+| +++.+|+....+. ...+.+.+.|++.|+++.+ ..+... .....+...+..
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~ 81 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANI 81 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHH
Confidence 44444444433 23566777778 9999998654333 4678888899989988754 334333 345577788888
Q ss_pred HhcCCCeEEEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeC
Q 003167 127 VRMMEARVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 127 i~~~~~~viv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~ 167 (843)
+++.++|+||-.+.+ -|+..++... .| -+++-|.|.
T Consensus 82 ~~~~~~d~IIavGGGsv~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 82 ARKAEAAIVIGVGGGKTLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHhcCCCEEEEeCChHHHHHHHHHHHh--cC---CCEEEeccc
Confidence 888999999977654 4566655422 23 345556655
No 252
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=63.71 E-value=74 Score=30.98 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=42.2
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHH---HHHhhCCC---------------------Ccce-EeCCCHHHHHHHHhcC
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENY---LIEELSIP---------------------KSRL-VALGSPEEYAIALENR 644 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~---l~~~~~~~---------------------~~~~-~~~~~~~~~~~~l~~g 644 (843)
..+++++||. .|.+|++..+.+.... +.+..|+- ..++ ++. ...+..+.+..|
T Consensus 91 ~kiksl~dL~-~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el-~aaql~~al~dg 168 (246)
T 4ef1_A 91 KKYKSLQEIP-DGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHES-DPAIMTTLYDNE 168 (246)
T ss_dssp SSCSSGGGSC-TTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEE-CGGGHHHHHHTT
T ss_pred CCCCCHHHcC-CCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeec-CHHHHHHHhccc
Confidence 5799999996 4889999987654222 11333320 1133 344 456678888889
Q ss_pred CcEEEEcChhhH
Q 003167 645 TVAAVVDERPYI 656 (843)
Q Consensus 645 ~~~a~~~~~~~~ 656 (843)
++|+.+....++
T Consensus 169 ~vDaavin~n~a 180 (246)
T 4ef1_A 169 EGAAVLINSNFA 180 (246)
T ss_dssp CSSEEEECHHHH
T ss_pred cccEEEEechHH
Confidence 999998776554
No 253
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=63.07 E-value=21 Score=37.19 Aligned_cols=109 Identities=8% Similarity=0.090 Sum_probs=69.5
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 126 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 126 (843)
|+-+...+... ..+.++++.+|.+++.+|+....+. ...+.+.+.+++.|+++...... ++ .+.+.+... +.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~--~~~~~v~~~-~~ 83 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KN--IDFDEIGTN-AF 83 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CC--CBHHHHHHH-HT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CC--CCHHHHHHH-HH
Confidence 45444544433 2356677888889999998655433 46788888898889877543322 33 346667777 77
Q ss_pred HhcCCCeEEEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeCc
Q 003167 127 VRMMEARVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 127 i~~~~~~viv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
+++.++|+||-.+.+ -|+..++... .| -+++-|.|..
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 84 KIPAEVDALIGIGGGKAIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp TSCTTCCEEEEEESHHHHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred hhhcCCCEEEEECChHHHHHHHHHHhh--cC---CCEEEecCcc
Confidence 788899999977654 4566555422 23 3456666554
No 254
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=63.00 E-value=15 Score=36.54 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=58.9
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 71 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 71 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
.-+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---N--ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---T--TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 34678888874 567788899999999999998876432 2 2245556778888889999999987665 5567
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+.+.+.|+
T Consensus 79 ~~l~~~~i 86 (276)
T 3jy6_A 79 QEILHQQM 86 (276)
T ss_dssp HHHHTTSS
T ss_pred HHHHHCCC
Confidence 77777665
No 255
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=62.84 E-value=19 Score=35.99 Aligned_cols=79 Identities=10% Similarity=0.068 Sum_probs=58.8
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh----hHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR----TGLM 146 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~----~~~~ 146 (843)
+.|+++.. ++.|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---N--NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 78999987 4667888999999999999998876432 1 2345556778888889999999876532 3345
Q ss_pred HHHHHHHcCC
Q 003167 147 VFDVAQRLGM 156 (843)
Q Consensus 147 i~~~a~~~g~ 156 (843)
.++++.+.|+
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 6777777775
No 256
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=62.79 E-value=21 Score=35.96 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=58.0
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
.+|+++.. +++|.....+.+.+++++.|..+..... .+ .......++.+.+.++|.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~----~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PD----GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CS----HHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CC----HHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 36788876 3677888899999999999998875432 12 55566778888888999999887543 4455677
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|.
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 257
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=62.45 E-value=10 Score=38.79 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=55.9
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
++|+++.. ++.|.....+.+++++++.|.++.... +.. .+.......++.+.+.++|+||+...... ....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 57888875 456777888899999999998876421 222 23445566778888889999988765433 355777
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++++.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8887775
No 258
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=61.75 E-value=19 Score=36.75 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=58.7
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
++|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY---AD--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee---CC--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888874 67888899999999999999877544 12 2345556677788778999999876543 4456778
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|+
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8888775
No 259
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=61.67 E-value=17 Score=36.56 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=55.2
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
++|+++.. ++.|.....+.+.+++++.|.++.... +.. .+.......++.+.+.++|.||+..... .....++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46888875 456778889999999999998876321 112 2344556677888788999998876543 3345667
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 260
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=61.14 E-value=8.4 Score=38.18 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=57.4
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 003167 73 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~ 150 (843)
+.|+++..+ +.|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+..........+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 578888874 567788899999999999998876432 2 235556677888888999999987654223446667
Q ss_pred HHHcCC
Q 003167 151 AQRLGM 156 (843)
Q Consensus 151 a~~~g~ 156 (843)
+.+.|.
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777665
No 261
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=59.48 E-value=1.3e+02 Score=29.99 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=47.8
Q ss_pred eEeHHHHHHHHHH---C---CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcc--eeeee-cc-ccc
Q 003167 402 GYCIDVFLAAVRL---L---PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT--KAVDF-TQ-PYI 471 (843)
Q Consensus 402 G~~~dl~~~i~~~---l---~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~--~~vdf-s~-p~~ 471 (843)
.+..+++..+.++ . + ++++... ++...++.+|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~--v~v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAP--FKVAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC-----CEEEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCC--eEEEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 3456788888888 6 5 4455554 56889999999999999876322111110 11122 24 788
Q ss_pred ccceEEEEeccC
Q 003167 472 ESGLVVVAPVRK 483 (843)
Q Consensus 472 ~~~~~~~v~~~~ 483 (843)
...+++++|...
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 889999988765
No 262
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=59.43 E-value=39 Score=30.79 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=50.9
Q ss_pred cCCcEEEEEEecCCCCc---chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcCh
Q 003167 70 FGWGEVIAIFNDDDQGR---NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGYS 141 (843)
Q Consensus 70 ~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~~ 141 (843)
+.--+++||...|+-|+ .....+.+.+++.|..+.....++.+ ..++...+.+..+ .++|+||..+..
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 82 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNGGT 82 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEECCC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 34458999988766553 34677888899999999888777765 7788888888765 379999987643
No 263
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.34 E-value=16 Score=36.61 Aligned_cols=81 Identities=7% Similarity=0.069 Sum_probs=58.4
Q ss_pred CCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHH
Q 003167 71 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMV 147 (843)
Q Consensus 71 ~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i 147 (843)
+-++|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+..... .....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---Q--NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---S--SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 3467888886 4567788899999999999998876432 2 2355566778888889999999876543 33467
Q ss_pred HHHHHHcCC
Q 003167 148 FDVAQRLGM 156 (843)
Q Consensus 148 ~~~a~~~g~ 156 (843)
++++.+.|+
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 778877775
No 264
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=58.37 E-value=37 Score=31.29 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=49.3
Q ss_pred cCCcEEEEEEecCC----------CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC-CCeEEEEE
Q 003167 70 FGWGEVIAIFNDDD----------QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVH 138 (843)
Q Consensus 70 ~~w~~v~ii~~d~~----------~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~ 138 (843)
+.--+|+||...|+ .-......+.+.+++.|.++.....++.+ ..++...+.+..+. ++|+||..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 44457888887542 22455678888999999999888777765 77888888877654 59999987
Q ss_pred cC
Q 003167 139 GY 140 (843)
Q Consensus 139 ~~ 140 (843)
+.
T Consensus 89 GG 90 (178)
T 2pjk_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 265
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=58.15 E-value=39 Score=32.35 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 405 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 405 ~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 3677777777786655532 44677888888 8999988754
No 266
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=57.51 E-value=1.6e+02 Score=29.50 Aligned_cols=75 Identities=3% Similarity=-0.089 Sum_probs=45.0
Q ss_pred ceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCCccccCcceeeecCCCCchHHHHHHHHhhhc
Q 003167 627 RLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQEFTKSGWGFAFPRDSPLAIDMSTAILTLSE 701 (843)
Q Consensus 627 ~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 701 (843)
++..+++..+..+.+.+|++++.+...........+..++.++-+-......+++++|+++-.+.--+.|.-|..
T Consensus 175 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 445567778889999999998877654444333333333333222112233478899999865555555555543
No 267
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=57.41 E-value=28 Score=32.37 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=48.6
Q ss_pred CcEEEEEEecCCC----CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 72 WGEVIAIFNDDDQ----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 72 w~~v~ii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
--+|+||...|+- -......+.+.+++.|.++.....++.+ ..++...+.+..+.++|+|+..+.
T Consensus 30 ~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 3468888864331 3445778888999999999988877765 778888888775567999998764
No 268
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=57.28 E-value=15 Score=38.33 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=62.6
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.+.++++.+|.+++.+|+..... +..+.+.+.|++.+..+ +. .+.++ .+...+...+..+++.++|+||-.+.+
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 97 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-FS-EAAMH--TPVEVTKTAVEAYRAAGADCVVSLGGG 97 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-ec-CcCCC--CcHHHHHHHHHHHhccCCCEEEEeCCc
Confidence 36677888999999999865433 35778888888766443 22 23333 346678888888899999999987765
Q ss_pred h--hHHHHHHHHHHcCCcccceEEEEeCc
Q 003167 142 R--TGLMVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 142 ~--~~~~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
. |+.+++.. ..+ ..++-|.|..
T Consensus 98 s~iD~aK~iA~--~~~---~p~i~IPTTa 121 (353)
T 3hl0_A 98 STTGLGKAIAL--RTD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHH--HHC---CEEEEEECSS
T ss_pred HHHHHHHHHHh--ccC---CCEEEEeCCc
Confidence 3 45555433 223 2345555543
No 269
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=57.19 E-value=33 Score=33.99 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=60.2
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcCh---------hhHHHHHhcCCCeEEeC
Q 003167 602 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHCQFSVRG 670 (843)
Q Consensus 602 ~~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~~l~~~~ 670 (843)
..+|+++ .|++.+.-..+.++.....++++.+.+++++++.+|++|..+... ..++.+.. .++.+++
T Consensus 3 ~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~g 80 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QDVFAHG 80 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TSSEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CCcEEEE
Confidence 3568886 788887776555542223488999999999999999998776532 12333333 3699999
Q ss_pred CccccCcceeeecCCCC
Q 003167 671 QEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp 687 (843)
+.+.+...++...+|..
T Consensus 81 E~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 81 EIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEECCEEEECCSSCC
T ss_pred EEEEEeeeEEEecCCCC
Confidence 99888888888877743
No 270
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=57.10 E-value=34 Score=35.12 Aligned_cols=85 Identities=6% Similarity=-0.086 Sum_probs=57.7
Q ss_pred HHHcCCcEEEEEEec----CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 67 VSYFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 67 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
+..-.-+.|+++..+ +.|.......+.+++++.|..+..... . .+.......++.+.+.++|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---K--HSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---T--TSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 333445689999875 456778899999999999998875431 2 2244455677888889999999876544
Q ss_pred hHHHHHHHHHHcCC
Q 003167 143 TGLMVFDVAQRLGM 156 (843)
Q Consensus 143 ~~~~i~~~a~~~g~ 156 (843)
....+.+.+.+.|.
T Consensus 131 ~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQ 144 (338)
T ss_dssp CHHHHHHHHHHCSS
T ss_pred ChHHHHHHHHcCCC
Confidence 44446666666554
No 271
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=56.54 E-value=18 Score=35.64 Aligned_cols=80 Identities=8% Similarity=-0.039 Sum_probs=56.0
Q ss_pred EEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCC-CeEEEEEcCh-hhHHHHHH
Q 003167 74 EVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGYS-RTGLMVFD 149 (843)
Q Consensus 74 ~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~~-~~~~~i~~ 149 (843)
+|+++.. ++.|.....+.+.+++++.|.++.....- .. .+.......++.+.+.+ +|.||+.... ......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DD--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5777775 46678888999999999999988754211 11 23444556777777778 9999987743 34456777
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|.
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8877775
No 272
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=56.45 E-value=35 Score=33.89 Aligned_cols=82 Identities=5% Similarity=-0.134 Sum_probs=53.6
Q ss_pred HcCCcEEEEEEec----CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhH
Q 003167 69 YFGWGEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 144 (843)
Q Consensus 69 ~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 144 (843)
.-.-.+|+++..+ +.|.......+.+++++.|.++.... .. .+.......++.+.+.++|.||+.......
T Consensus 16 ~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 16 AKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp ---CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred cCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 3345689998864 46778889999999999999876432 22 234455667788888899999887653222
Q ss_pred HHHHHHHHH-cCC
Q 003167 145 LMVFDVAQR-LGM 156 (843)
Q Consensus 145 ~~i~~~a~~-~g~ 156 (843)
..++.+.+ .|.
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 34556666 564
No 273
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=56.18 E-value=16 Score=36.80 Aligned_cols=81 Identities=9% Similarity=-0.041 Sum_probs=57.7
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh-hhHHHHHH
Q 003167 73 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS-RTGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~-~~~~~i~~ 149 (843)
.+|+++..+ +.|.......+.+++++.|..+.....-... +.......++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGAN---DVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSC---CHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 467888764 6788888999999999999988764321111 34556677888888999999886543 33355677
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|+
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 8877775
No 274
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=56.09 E-value=47 Score=32.50 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
..+|...+.. -.-+.+++ |..|..+..+.+...-+..++.|..+..+ .. .+ ++.+++..++|+|.+.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-~~------~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-ID------TV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-CS------TH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-CC------HH--HHHHHHHcCCCEEEEecc
Confidence 4455544444 56677666 66677778888888777778887755533 22 22 466788999999998876
Q ss_pred h---hhHHHHHHHHHHcCCc
Q 003167 141 S---RTGLMVFDVAQRLGMM 157 (843)
Q Consensus 141 ~---~~~~~i~~~a~~~g~~ 157 (843)
. .+...+++.++++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 4 4677899999999874
No 275
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=55.99 E-value=45 Score=33.40 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=42.3
Q ss_pred CCCChHHhhhCC--CeEEEEeC------chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHH
Q 003167 591 PIKGIDTLMTSN--DRVGYQVG------SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDL 658 (843)
Q Consensus 591 ~i~s~~dL~~~~--~~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~ 658 (843)
.|+|++||.+.. ..+|...+ .-... +.+.+++.-..+... +.....+++++|+.+++..-.+....
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~-l~~~Ygl~~~~~~~~-d~g~~~~A~~~~~~~v~~~wsp~~~~ 202 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEG-FKKEYGFDFGTVRPM-QIGLVYDALNTEKLDVALGYSTDGRI 202 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHH-HHHHHCCCCSEEEEE-CGGGHHHHHHTTSCSEEEEETTCHHH
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHH-HHHHcCCCCcccccc-CHHHHHHHHHcCCCeEEEEeCCCchh
Confidence 799999998643 35776542 22233 346788753334444 33367889999999988876665433
No 276
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=55.77 E-value=52 Score=33.47 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=47.3
Q ss_pred cEEEEEEe----cC-CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 73 GEVIAIFN----DD-DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~~----d~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
.+|++|+. ++ .|.....+.+.+.+++.|..+..... .. ..+....+..+.+.++|.||+.+.
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~--~~----~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTA--ST----DAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEEC--CS----GGGHHHHHHHHHHTTCSEEEEEST
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeC--CC----HHHHHHHHHHHHHcCCCEEEECCh
Confidence 57899985 34 57777788999999999998876543 22 345667788888899999998764
No 277
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.57 E-value=56 Score=31.91 Aligned_cols=93 Identities=9% Similarity=0.008 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCcEEEEEEec------------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHh
Q 003167 61 SAIAEMVSYFGWGEVIAIFND------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 128 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~ 128 (843)
....+.++..|.+.|=+...+ ........+.+++.+++.|+++........ ....++...+...+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHHH
Confidence 456667788899988776432 112234578999999999999887655432 23567888888888
Q ss_pred cCCCeEEEEEcChhhHHHHHHHHHHcCC
Q 003167 129 MMEARVIVVHGYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 129 ~~~~~viv~~~~~~~~~~i~~~a~~~g~ 156 (843)
..+++.|+++...+....+...|.+.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8999999998766666677777777775
No 278
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.17 E-value=28 Score=34.66 Aligned_cols=79 Identities=5% Similarity=0.047 Sum_probs=55.3
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
++|+++.. ++.|.....+.+++++++.|.++..... . .+.......++.+.+.++|.||+..... .....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46888886 4667888899999999999998775321 2 2244455677788788999998876433 2334567
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 279
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=54.70 E-value=36 Score=35.43 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=58.5
Q ss_pred CcEEEEEEec----CCCCcchHHHHHHHHHhcC--cEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 003167 72 WGEVIAIFND----DDQGRNGVTALGDKLAEIR--CKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 145 (843)
Q Consensus 72 w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~ 145 (843)
-.+|++|+.+ ..|.....+.+++..++.| +++.+.+..+ ...+....++.+.+.++|+||..+.. ...
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~-----~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~ 99 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA-----EGADAERSIKRIARAGNKLIFTTSFG-YMD 99 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC-----TTHHHHHHHHHHHHTTCSEEEECSGG-GHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC-----CHHHHHHHHHHHHHCCCCEEEECCHH-HHH
Confidence 4689999963 3577788899999888888 7777655432 23577888999999999988876543 233
Q ss_pred HHHHHHHHcCCcccceEEEEeCc
Q 003167 146 MVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 146 ~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
.+.+.|.+. ++..++..+.
T Consensus 100 ~~~~vA~~~----Pdv~fv~id~ 118 (356)
T 3s99_A 100 PTVKVAKKF----PDVKFEHATG 118 (356)
T ss_dssp HHHHHHTTC----TTSEEEEESC
T ss_pred HHHHHHHHC----CCCEEEEEec
Confidence 345555442 2334555443
No 280
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=54.67 E-value=35 Score=30.98 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=47.0
Q ss_pred EEEEEEecCC-----CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC-CCeEEEEEcCh
Q 003167 74 EVIAIFNDDD-----QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGYS 141 (843)
Q Consensus 74 ~v~ii~~d~~-----~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~~ 141 (843)
+++||...|+ .-......+.+.+++.|.++.....++.+ ..++...+.+..+. ++|+||..+..
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 72 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNGGT 72 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 5677765433 12345677888999999999888777765 78888888887664 79999987643
No 281
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=54.01 E-value=22 Score=35.42 Aligned_cols=80 Identities=4% Similarity=-0.078 Sum_probs=56.3
Q ss_pred CCcEEEEEEec-------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh
Q 003167 71 GWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT 143 (843)
Q Consensus 71 ~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~ 143 (843)
+-+.|+++..+ +.|.......+.+++++.|..+... ... .+.......++.+.+.++|.||+......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 44678888866 5677888999999999999887642 222 22344566777888899999998664432
Q ss_pred HHHHHHHHHHcCC
Q 003167 144 GLMVFDVAQRLGM 156 (843)
Q Consensus 144 ~~~i~~~a~~~g~ 156 (843)
. ..++.+.+.|.
T Consensus 82 ~-~~~~~l~~~~i 93 (292)
T 3k4h_A 82 D-RIIQYLHEQNF 93 (292)
T ss_dssp C-HHHHHHHHTTC
T ss_pred h-HHHHHHHHCCC
Confidence 2 45667777665
No 282
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=53.73 E-value=85 Score=31.10 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
..+|......|-..+.++.++ .|..+..+.+...-+..++.|.....+ .. .. ++.+++..++|.|++...
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~-~~f~Gs~~~L~~ir~~v~lPVl~Kdfi-~d----~~----qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDT-PSFQGAPEFLTAARQACSLPALRKDFL-FD----PY----QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCS-TTTCCCHHHHHHHHHTSSSCEEEESCC-CS----TH----HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEeccc-cccCCCHHHHHHHHHhcCCCEEECCcc-CC----HH----HHHHHHHcCCCEEEEccc
Confidence 456777778899999988844 454567777777766678877654332 22 11 577788899999998763
Q ss_pred ---hhhHHHHHHHHHHcCCc
Q 003167 141 ---SRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 141 ---~~~~~~i~~~a~~~g~~ 157 (843)
..+...++..++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 34677889999999974
No 283
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=53.63 E-value=19 Score=37.08 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=49.7
Q ss_pred cccchhhHHHHHHHHhhcccc--ccc--ccchhHHHHHHHHHHHHHHhhhhcceeeeeeecccc
Q 003167 530 RKQIVTVLWFSFSTMFFAHRE--NTV--STLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 589 (843)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~--~~~--s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 589 (843)
..++..+|||++.++.--|.. .|. .+.+|++..+-.++++++.+.-++-+.+-++.++..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 356899999999999977644 454 567999999999999999999999988888776644
No 284
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=53.16 E-value=16 Score=38.30 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.+.++++.+|.+++.+|+....+ +..+.+.+.|++.+..+ +. .+.++ .+...+...++.+++.++|+||-.+.+
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 99 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-YA-GAVMH--VPIESARDATARAREAGADCAVAVGGG 99 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-EC-CCCTT--CBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-ec-CCcCC--CCHHHHHHHHHHhhccCCCEEEEeCCc
Confidence 46677888999999999865543 34677888888765432 22 22333 346677788888888999999987765
Q ss_pred h--hHHHHHHHHHHcCCcccceEEEEeCc
Q 003167 142 R--TGLMVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 142 ~--~~~~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
. |+.+++.. ..+ -.++-|.|..
T Consensus 100 sviD~aK~iA~--~~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 100 STTGLGKAIAL--ETG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHH--HHC---CCEEEEECSS
T ss_pred HHHHHHHHHHh--ccC---CCEEEEeCCc
Confidence 3 55555433 223 3456666653
No 285
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=53.05 E-value=23 Score=35.99 Aligned_cols=85 Identities=7% Similarity=0.055 Sum_probs=58.3
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChh---------hHHHHHhcCCCeEEeC
Q 003167 602 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERP---------YIDLFLSDHCQFSVRG 670 (843)
Q Consensus 602 ~~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~---------~~~~~~~~~~~l~~~~ 670 (843)
..+|+++ .|++.+.-..+.+.-....++++.+.+++++++.+|++|..+.... .++. +.+..++.+++
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~-L~~~~~l~Ivg 84 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDA-IATGQELRIIR 84 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHH-TTSSSCCEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHH-hhCCCCeEEEE
Confidence 4578887 6888777664432223356889999999999999999875554211 1222 23445799999
Q ss_pred CccccCcceeeecCCCC
Q 003167 671 QEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp 687 (843)
+.+.+...++...+|..
T Consensus 85 E~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 85 EALVPITFVLVARPGVE 101 (313)
T ss_dssp EEEEECCCEEEECTTCC
T ss_pred EEEEeeeEEEEcCCCCC
Confidence 98888888887777643
No 286
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=53.03 E-value=77 Score=27.56 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=56.5
Q ss_pred EEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh----HHHHHH
Q 003167 74 EVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT----GLMVFD 149 (843)
Q Consensus 74 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~----~~~i~~ 149 (843)
+|.+-....+...-....+...|+..|.+|.+--... ....++..+++.++++|.+.+.... ...+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~--------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS--------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE--------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC--------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 5666666666666677888889999999998654321 2345566777789999999875432 345677
Q ss_pred HHHHcCCcccceEEEEeC
Q 003167 150 VAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 150 ~a~~~g~~~~~~~~i~~~ 167 (843)
+.++.|.. .-.+|+++.
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 77777753 234555543
No 287
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=52.85 E-value=18 Score=36.54 Aligned_cols=85 Identities=1% Similarity=-0.111 Sum_probs=56.5
Q ss_pred HHHHcCCcEEEEEEec-------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEE
Q 003167 66 MVSYFGWGEVIAIFND-------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 138 (843)
Q Consensus 66 ll~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~ 138 (843)
-++.-.-+.|+++..+ +.|.......+.+++++.|..+... ... .+.......++.+.+.++|.||+.
T Consensus 16 ~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 16 TLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSE--NSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCS--SHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEe
Confidence 3444456789999876 5577788999999999999987752 222 223344667788888999999987
Q ss_pred cChhhHHHHHHHHHHcCC
Q 003167 139 GYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 139 ~~~~~~~~i~~~a~~~g~ 156 (843)
...... ..++.+.+.|.
T Consensus 91 ~~~~~~-~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKDD-PIEHLLNEFKV 107 (305)
T ss_dssp SCBTTC-HHHHHHHHTTC
T ss_pred CCcCCc-HHHHHHHHcCC
Confidence 644322 45666777665
No 288
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=52.63 E-value=85 Score=31.37 Aligned_cols=90 Identities=6% Similarity=0.008 Sum_probs=51.4
Q ss_pred CCCChHHhhhCC--CeEEEEeC------chHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhc
Q 003167 591 PIKGIDTLMTSN--DRVGYQVG------SFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSD 662 (843)
Q Consensus 591 ~i~s~~dL~~~~--~~i~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~ 662 (843)
.|+|++||.+.. .++|...+ .-... +.+.+++.-..+... +.....+++++|+.+++..-.+....- +
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~-l~~~YGl~~~~~~~~-~~g~~~~A~~~~~~~v~~~wsp~~~~~--~ 205 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQD-FTKTYGMTFGGTYPM-QIGLVYDAVKSGKMDIVLAYSTDGRIK--S 205 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHH-HHHHHCCCCSEEEEC-CGGGHHHHHHHTSCSEEEEETTCHHHH--H
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHH-HHHHcCCCccccccc-CHHHHHHHHHcCCCeEEEEeCCCchhh--c
Confidence 799999998653 35666532 22223 346788753344444 333567899999999888766654332 1
Q ss_pred CCCeEEeCCc---cccCcceeeecCC
Q 003167 663 HCQFSVRGQE---FTKSGWGFAFPRD 685 (843)
Q Consensus 663 ~~~l~~~~~~---~~~~~~~~~~~k~ 685 (843)
-++.++.++ |.......+++++
T Consensus 206 -~dL~~LeD~k~~fp~~~v~~vvr~~ 230 (284)
T 3r6u_A 206 -YGLKMLKDDKQFFPPYDCSPVVPEK 230 (284)
T ss_dssp -TTEEECBCTTCCSCCCBEEEEEEHH
T ss_pred -CCceEcCCCcccCCccceeEEEcHH
Confidence 145555432 2233344455544
No 289
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=52.61 E-value=15 Score=37.30 Aligned_cols=53 Identities=11% Similarity=0.185 Sum_probs=41.0
Q ss_pred cchhhHHHHHHHHhhcccc--cccccchh------HHHHHHHHHHHHHHhhhhcceeeeee
Q 003167 532 QIVTVLWFSFSTMFFAHRE--NTVSTLGR------VVLIIWLFVVLIITSSYTASLTSILT 584 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~--~~~s~~~R------~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (843)
++.+++|+++.++.-.|.. .|.+..+| ++.++|.++++.+.++-.+.+..++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999877643 56666666 58899999999888877776665554
No 290
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=51.70 E-value=48 Score=31.10 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=69.5
Q ss_pred cEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeee
Q 003167 30 PLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 108 (843)
Q Consensus 30 P~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~ 108 (843)
.+||=|++...+.+ ..-| +.-...+.....+++...-+ ++ ++++++...+.. ...+.+.+.+ |.++....
T Consensus 54 VIISRGgta~~lr~~~~iP-VV~I~~s~~Dil~al~~a~~-~~-~kIavvg~~~~~--~~~~~~~~ll---~~~i~~~~- 124 (196)
T 2q5c_A 54 AIISRGATSDYIKKSVSIP-SISIKVTRFDTMRAVYNAKR-FG-NELALIAYKHSI--VDKHEIEAML---GVKIKEFL- 124 (196)
T ss_dssp EEEEEHHHHHHHHTTCSSC-EEEECCCHHHHHHHHHHHGG-GC-SEEEEEEESSCS--SCHHHHHHHH---TCEEEEEE-
T ss_pred EEEECChHHHHHHHhCCCC-EEEEcCCHhHHHHHHHHHHh-hC-CcEEEEeCcchh--hHHHHHHHHh---CCceEEEE-
Confidence 66777777666654 2223 55666677777777776644 43 489998865432 2344455544 55555432
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 109 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 109 ~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
+ .+..|....++++++.+.++||-.+. ..+.|+++|+.
T Consensus 125 ~-----~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 125 F-----SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp E-----CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred e-----CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 2 13678899999999999999876432 35667888875
No 291
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=51.60 E-value=33 Score=35.22 Aligned_cols=82 Identities=4% Similarity=0.034 Sum_probs=53.7
Q ss_pred cEEEEEEec---CCCCcchHHHHHHHHHhcCcEEEEeeecCC-CCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 73 GEVIAIFND---DDQGRNGVTALGDKLAEIRCKISYKSALPP-DQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 73 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
+.|+++..+ ++|.......+.+++++.|..+.....-.. . .+.......++.+.+.++|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 468888865 567778899999999999987654321111 0 1234455677788788999999844333224456
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+++.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 66666564
No 292
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=51.53 E-value=8.7 Score=39.04 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHhhcc--cccccccchhHHHHHHHHHHHHHHhhhhcceeeee
Q 003167 532 QIVTVLWFSFSTMFFAH--RENTVSTLGRVVLIIWLFVVLIITSSYTASLTSIL 583 (843)
Q Consensus 532 ~~~~~~~~~~~~l~~~~--~~~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 583 (843)
++.+++||++.++.--| .-.|.+..+|++.++|.++++.+.....+.+...+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999998776 44789999999999999999999999998887665
No 293
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=51.27 E-value=1.2e+02 Score=27.28 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=58.4
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh----hhHHHHH
Q 003167 73 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 148 (843)
Q Consensus 73 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~i~ 148 (843)
.+|.+.....+...-+...+...|+..|.+|.+--. ......++..+++.++|+|.+.+.. .....++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~--------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL--------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS--------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 466666666677777788888899999999875321 1223456778888999999998753 3456677
Q ss_pred HHHHHcCCcccceEEEEe
Q 003167 149 DVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 149 ~~a~~~g~~~~~~~~i~~ 166 (843)
+++++.|.. .-.+|+++
T Consensus 91 ~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHTTCT-TSCEEEEE
T ss_pred HHHHhcCCC-CCEEEEeC
Confidence 778887752 23456654
No 294
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=51.09 E-value=30 Score=34.95 Aligned_cols=79 Identities=8% Similarity=-0.043 Sum_probs=53.4
Q ss_pred EEEEEEecCC-CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHHHH
Q 003167 74 EVIAIFNDDD-QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFDVA 151 (843)
Q Consensus 74 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~~a 151 (843)
+|+++..+.. |.....+.+.+++++.|.++.... +.. .+.......++.+.+.++|.||+..... .....++++
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQK--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5777765322 777888899999999998876532 112 2344556677788788999999876433 334567777
Q ss_pred HHcCC
Q 003167 152 QRLGM 156 (843)
Q Consensus 152 ~~~g~ 156 (843)
.+.|.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 295
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=50.80 E-value=30 Score=34.85 Aligned_cols=84 Identities=6% Similarity=-0.041 Sum_probs=55.0
Q ss_pred HHHcCCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhH
Q 003167 67 VSYFGWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 144 (843)
Q Consensus 67 l~~~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 144 (843)
|+.-+-+.|+++.. ++.|.....+.+.+++++.|..+..... . .+.......++.+.+.++|.||+.......
T Consensus 10 L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 10 LRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLVSEGRVDGVLLQRREDFD 84 (303)
T ss_dssp -------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHHHSCSSSEEEECCCTTCC
T ss_pred HhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCc
Confidence 33444567888886 4668888999999999999998875432 1 224455677888888999999987654332
Q ss_pred HHHHHHHHHcCC
Q 003167 145 LMVFDVAQRLGM 156 (843)
Q Consensus 145 ~~i~~~a~~~g~ 156 (843)
...++.+.+ |.
T Consensus 85 ~~~~~~l~~-~i 95 (303)
T 3kke_A 85 DDMLAAVLE-GV 95 (303)
T ss_dssp HHHHHHHHT-TS
T ss_pred HHHHHHHhC-CC
Confidence 215556666 64
No 296
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=50.49 E-value=32 Score=34.54 Aligned_cols=79 Identities=6% Similarity=0.032 Sum_probs=55.1
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCc-EEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRC-KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVF 148 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~ 148 (843)
++|+++.. ++.|.......+.+++++.|. .+.... .. .+.......++.+.+.++|.||+...... ....+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND---SQ--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEec---CC--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46888875 456777889999999999997 776532 12 22444556777888889999998764433 34567
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+++.+.|.
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77777664
No 297
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=50.05 E-value=38 Score=33.72 Aligned_cols=78 Identities=15% Similarity=-0.024 Sum_probs=54.3
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 003167 73 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~ 150 (843)
+.|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SD--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 578888864 66778889999999999999876532 22 22445566788888889999998764322 234556
Q ss_pred HHHcCC
Q 003167 151 AQRLGM 156 (843)
Q Consensus 151 a~~~g~ 156 (843)
+.+.|.
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 666564
No 298
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=48.78 E-value=34 Score=34.18 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=61.8
Q ss_pred CCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCC-CHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEe
Q 003167 591 PIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALG-SPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVR 669 (843)
Q Consensus 591 ~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~ 669 (843)
++++++||. .+.+|+...-.....|| .+.+.+ .+++... +.|-. ...|-.|++++-.....-+.++ +|..+
T Consensus 105 ~~~~~~~l~-~~~RIATkyp~l~~~yf-~~~gi~-~~ii~l~GsvE~a---p~~GlADaIvDivsTG~TLraN--gL~~i 176 (289)
T 2vd3_A 105 TIRGPEDIP-RGAVIATEFPGITENYL-REHGID-AEVVELTGSTEIA---PFIGVADLITDLSSTGTTLRMN--HLRVI 176 (289)
T ss_dssp SCCSGGGCC-TTCEEEESCHHHHHHHH-HHTTCC-CEEEECSSCGGGT---TTTTSCSEEEEEESSTHHHHHT--TEEEE
T ss_pred CCCCHHHhc-CCCEEEeCcHHHHHHHH-HHcCCc-EEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC--CCEEe
Confidence 566778883 37889988888889999 456665 3555443 44322 3348889999877766665444 46666
Q ss_pred CCccccCcceeeecCCC-Cc-hHHHHHHHHhhh
Q 003167 670 GQEFTKSGWGFAFPRDS-PL-AIDMSTAILTLS 700 (843)
Q Consensus 670 ~~~~~~~~~~~~~~k~s-pl-~~~in~~i~~l~ 700 (843)
+..+ ...-.+..+|.+ +. .+.++..+.++.
T Consensus 177 e~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 177 DTIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EEEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 5444 344455566665 32 234555555553
No 299
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.37 E-value=38 Score=33.77 Aligned_cols=82 Identities=5% Similarity=-0.011 Sum_probs=52.7
Q ss_pred HHHcCCcEEEEEEe-cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 003167 67 VSYFGWGEVIAIFN-DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 145 (843)
Q Consensus 67 l~~~~w~~v~ii~~-d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~ 145 (843)
++.-+-+.|+++.. ++.|.....+.+.+++++.|..+.....-. . .. ....+..+.+.++|.||+.......
T Consensus 7 L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~----~~-~~~~~~~l~~~~vdgiIi~~~~~~~- 79 (289)
T 3k9c_A 7 LRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP-S----RA-EKVAVQALMRERCEAAILLGTRFDT- 79 (289)
T ss_dssp ------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT-T----BC-HHHHHHHHTTTTEEEEEEETCCCCH-
T ss_pred hhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-C----HH-HHHHHHHHHhCCCCEEEEECCCCCH-
Confidence 33334567888872 355677889999999999999887654322 1 22 5667888888899999988754433
Q ss_pred HHHHHHHHcCC
Q 003167 146 MVFDVAQRLGM 156 (843)
Q Consensus 146 ~i~~~a~~~g~ 156 (843)
..++.+.+ |+
T Consensus 80 ~~~~~~~~-~i 89 (289)
T 3k9c_A 80 DELGALAD-RV 89 (289)
T ss_dssp HHHHHHHT-TS
T ss_pred HHHHHHHc-CC
Confidence 45555554 54
No 300
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=48.04 E-value=70 Score=31.78 Aligned_cols=54 Identities=17% Similarity=-0.010 Sum_probs=35.6
Q ss_pred ccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcceeeeecccccccceEEEEeccC
Q 003167 419 VPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 419 ~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
+.++... ++...++..|.+|++|+++...... ...+ -..|+....+++++++..
T Consensus 120 v~i~~~~-------~~~~~~~~~l~~g~~D~~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 120 VLLDVRI-------EDQDHSARLLREGVAMGAVTTERNP---VPGC-RVHPLGEMRYLPVASRPF 173 (303)
T ss_dssp EEEEEEE-------CCHHHHHHHHHTTSCSEEEESCCSC---CTTE-EEEEEEEEEEEEEECHHH
T ss_pred ceEEEEe-------cChHHHHHHHHcCcceEEEecCCCC---CCCe-EEEEccceeEEEEecchH
Confidence 5555554 5578899999999999988643221 1122 245677778888877653
No 301
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=47.92 E-value=52 Score=32.89 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=59.3
Q ss_pred CCeEEEE--eCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcCh---------hhHHHHHhcCCCeEEeC
Q 003167 602 NDRVGYQ--VGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHCQFSVRG 670 (843)
Q Consensus 602 ~~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~~l~~~~ 670 (843)
..+|+++ .|++.+.-..+.+ .++++.+.+++++++.+|++|..+... ..++.+.. .++.+++
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~l~I~g 78 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RPVVILA 78 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SSEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CCcEEEE
Confidence 3568886 7888877765544 688999999999999999987665532 13344444 5799999
Q ss_pred CccccCcceeeecCCCC
Q 003167 671 QEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 671 ~~~~~~~~~~~~~k~sp 687 (843)
+.+.+...++...+|..
T Consensus 79 E~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 79 ETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEECCCEEEECSSCC
T ss_pred EEEEeeeeeEecCCCCC
Confidence 99888888888877743
No 302
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=47.88 E-value=64 Score=29.24 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=42.5
Q ss_pred EEEEEEecCCC-----CcchHHHHHHH----HHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 74 EVIAIFNDDDQ-----GRNGVTALGDK----LAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 74 ~v~ii~~d~~~-----g~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
+++||...|+- -......+.+. +++.|.++.....++.+ ..++...+++..+.++|+|+..+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECCC
Confidence 56777653322 22345677888 88899998887777765 778888888877656899998764
No 303
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=47.61 E-value=81 Score=30.67 Aligned_cols=93 Identities=9% Similarity=-0.033 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEE
Q 003167 61 SAIAEMVSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVH 138 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~ 138 (843)
....+.++..|.+.|=+.... .+......+.+++.+++.|+.+........ .....+...+...+..+++.|+++
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEec
Confidence 456777788899988776431 123345578999999999999875543321 235677888888888899988887
Q ss_pred cChhhHHHHHHHHHHcCC
Q 003167 139 GYSRTGLMVFDVAQRLGM 156 (843)
Q Consensus 139 ~~~~~~~~i~~~a~~~g~ 156 (843)
...+....+...|.+.|+
T Consensus 110 p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 110 PNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp ECGGGHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 666666777778877775
No 304
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=47.47 E-value=42 Score=33.25 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=53.8
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh-hHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR-TGLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~-~~~~i~~ 149 (843)
+.|+++.. ++.|.....+.+.+++++.|..+..... . .+...-...++.+.+.++|.||+..... .....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 46788876 4567778899999999999998775421 2 2234445667777788999998865432 2234567
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777665
No 305
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=47.32 E-value=48 Score=30.42 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=44.8
Q ss_pred EEEEEEecCC-------CC---cchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcC
Q 003167 74 EVIAIFNDDD-------QG---RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 140 (843)
Q Consensus 74 ~v~ii~~d~~-------~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~ 140 (843)
+++||...|. .| ...-..+.+.|++.|.+|.....++.+ ...+...+.+..+ .++|+|+..+.
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecCC
Confidence 6888875431 01 223567888999999999988887765 6777777776554 57899998764
No 306
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=46.70 E-value=14 Score=35.96 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=51.9
Q ss_pred EeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcc---eeeeecccccccceEE
Q 003167 401 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 477 (843)
Q Consensus 401 ~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 477 (843)
.|+.-+|+..+.++.+.++.+.. +.-..++.++.+|.+|+.+..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46677888888888786655554 33677899999999999876443322211 1112246889999999
Q ss_pred EEeccCC
Q 003167 478 VAPVRKL 484 (843)
Q Consensus 478 ~v~~~~~ 484 (843)
++|+..+
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998764
No 307
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=45.78 E-value=1.4e+02 Score=27.11 Aligned_cols=68 Identities=10% Similarity=-0.054 Sum_probs=41.5
Q ss_pred eEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcceeeeecccccccceEEEEec
Q 003167 402 GYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPV 481 (843)
Q Consensus 402 G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~~~vdfs~p~~~~~~~~~v~~ 481 (843)
.+-.+++..+.++.+ ++++... ++...+.+.+.+|..|+++..-... ...+ -+.|+....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHDKP---VQGC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCCSC---CTTC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCCCC---CCCc-eEEEccceEEEEEECh
Confidence 455788888888875 5566654 4456789999999555544421111 1112 2456677777777654
Q ss_pred c
Q 003167 482 R 482 (843)
Q Consensus 482 ~ 482 (843)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 3
No 308
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=45.78 E-value=49 Score=33.85 Aligned_cols=81 Identities=7% Similarity=0.017 Sum_probs=56.3
Q ss_pred cCCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 003167 70 FGWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 147 (843)
Q Consensus 70 ~~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i 147 (843)
-.-+.|+++.. ++.|.....+.+.+++++.|..+.... .. .+.......+..+.+.++|.||+....... ..
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 133 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN---SH--YDAGQELQLLRAYLQHRPDGVLITGLSHAE-PF 133 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-TH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CC--CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HH
Confidence 34467999886 467888999999999999999877532 12 234555677888888999999987643322 45
Q ss_pred HHHHHHcCC
Q 003167 148 FDVAQRLGM 156 (843)
Q Consensus 148 ~~~a~~~g~ 156 (843)
++.+.+.|.
T Consensus 134 ~~~l~~~~i 142 (339)
T 3h5o_A 134 ERILSQHAL 142 (339)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhcCCC
Confidence 566666664
No 309
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=45.68 E-value=6.1 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.610 Sum_probs=14.6
Q ss_pred ccchhhHHHHHHHHhhcc
Q 003167 531 KQIVTVLWFSFSTMFFAH 548 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~ 548 (843)
..+..++||+|++++..+
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 457889999999998754
No 310
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=45.67 E-value=52 Score=34.95 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=53.7
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCc-chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 63 IAEMVSYFGWGEVIAIFNDDDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 63 i~~ll~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++.......++ .+...+...+..+++.++|+||-.+.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455556 67 89999985443332 35677777776 7765433333333 456778888888999999999977654
Q ss_pred --hhHHHHHHHH
Q 003167 142 --RTGLMVFDVA 151 (843)
Q Consensus 142 --~~~~~i~~~a 151 (843)
-|+.+++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4566555443
No 311
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=44.96 E-value=55 Score=24.15 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=5.4
Q ss_pred chhhhHHHHH
Q 003167 777 SRSARLQTFL 786 (843)
Q Consensus 777 ~~~~~~~~~~ 786 (843)
.+-..+|.++
T Consensus 42 eRMSQikrlL 51 (70)
T 2klu_A 42 ERMSQIKRLL 51 (70)
T ss_dssp TTSSHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3345566666
No 312
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=44.13 E-value=50 Score=32.41 Aligned_cols=79 Identities=1% Similarity=0.022 Sum_probs=53.8
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
+.|+++.. ++.|.......+.+++++.|..+..... . .+...-...+..+.+.++|.||+...... ....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46888876 4567778899999999999988775321 1 12344455677787889999988654332 234566
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 313
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=44.07 E-value=54 Score=33.60 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=56.3
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~ 150 (843)
+.|+++.. ++.|.....+.+.+++++.|..+.... .. .+.......++.+.+.++|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV---TD--YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE---CT--TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 47899886 467888889999999999999886532 12 234555677888888999999987654332 45666
Q ss_pred HHHcCC
Q 003167 151 AQRLGM 156 (843)
Q Consensus 151 a~~~g~ 156 (843)
+.+.|.
T Consensus 143 l~~~~i 148 (344)
T 3kjx_A 143 LDAAGI 148 (344)
T ss_dssp HHHCSS
T ss_pred HHhCCC
Confidence 777665
No 314
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.75 E-value=43 Score=33.06 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHHhcCcE-EEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc
Q 003167 67 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCK-ISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 139 (843)
Q Consensus 67 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 139 (843)
++.-.-+.|+++..+ +.|.....+.+.+++++.|.. +... ... .+.......++.+.+.++|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STN--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSS--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCC--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 344455789999875 667788899999999999998 6542 222 2345556778888889999999887
No 315
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=43.69 E-value=20 Score=34.56 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=41.5
Q ss_pred HHHcCCcEEEEEEecCCCCcchHHHHHHHH-HhcCcEEEEeee--c-CCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 67 VSYFGWGEVIAIFNDDDQGRNGVTALGDKL-AEIRCKISYKSA--L-PPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 67 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~~--~-~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
....+ ++|+++...... . ..+.+.+ ++.|..+..... + ..........+...+.++.+.++|+||+.|..-
T Consensus 111 a~~~~-~rigVlat~~t~---~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~ 185 (228)
T 2eq5_A 111 ALAYG-RRVGVLNLTEET---P-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGM 185 (228)
T ss_dssp HHTTC-SSEEEECSSSCC---C-HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHH
T ss_pred HHHhC-CeEEEEecCccc---H-HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 33467 899999875332 2 3578888 888876432110 0 000000123345556666667899999988754
Q ss_pred h
Q 003167 143 T 143 (843)
Q Consensus 143 ~ 143 (843)
.
T Consensus 186 ~ 186 (228)
T 2eq5_A 186 S 186 (228)
T ss_dssp H
T ss_pred c
Confidence 4
No 316
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=43.62 E-value=19 Score=36.05 Aligned_cols=80 Identities=5% Similarity=-0.105 Sum_probs=56.2
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 71 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 71 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
+-+.|+++..+ +.|.......+++++++.|..+..... . .+.......++.+.+.++|.||+..... ....+
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~ 80 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---A--EDIVREREAVGQFFERRVDGLILAPSEG-EHDYL 80 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHH
Confidence 44678888864 566778899999999999998875432 2 2355566778888889999999876543 23355
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+.+.+.|.
T Consensus 81 ~~~~~~~i 88 (291)
T 3egc_A 81 RTELPKTF 88 (291)
T ss_dssp HHSSCTTS
T ss_pred HHhhccCC
Confidence 55555454
No 317
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=43.31 E-value=21 Score=35.79 Aligned_cols=85 Identities=5% Similarity=-0.077 Sum_probs=55.0
Q ss_pred HHHcCCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhH
Q 003167 67 VSYFGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 144 (843)
Q Consensus 67 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 144 (843)
|..-.-++|+++..+ +.|.....+.+.+++++.|..+.... .. .+.......++.+.+.++|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIAC---SE--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 333345689999863 56777888999999999999877532 12 224445567788888899999987654322
Q ss_pred HHHHHHHHHcCC
Q 003167 145 LMVFDVAQRLGM 156 (843)
Q Consensus 145 ~~i~~~a~~~g~ 156 (843)
..+++.+.+.|.
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 234455555453
No 318
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=43.08 E-value=68 Score=30.71 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEE
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS 104 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 104 (843)
++.++.+...+-++|+++... +... ...+++.+++.|+++.
T Consensus 104 ~a~~~~~~~~~~~rigvlaT~--~T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 104 DAVAEEILKRGVRKVLLLGTK--TTMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHTTCCEEEEESST--TTTS-CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEeCH--HHHh-hhHHHHHHHHCCCEEE
Confidence 455555555678999999743 3222 2357788888888764
No 319
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=43.01 E-value=1.3e+02 Score=28.23 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=59.1
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh----hhHHHHH
Q 003167 73 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVF 148 (843)
Q Consensus 73 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~i~ 148 (843)
.+|.+.....+...-+...+...++.+|.+|.+-- .. ......+..+++.+||+|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VD-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SS-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CC-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 46777777777777788889999999999987532 11 223455667777799999987753 3456677
Q ss_pred HHHHHcCCcccceEEEEe
Q 003167 149 DVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 149 ~~a~~~g~~~~~~~~i~~ 166 (843)
++.++.|....-.+++++
T Consensus 161 ~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHTTCGGGCEEEEES
T ss_pred HHHHhcCCCCCCeEEEEC
Confidence 788887754333455554
No 320
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=42.95 E-value=29 Score=37.45 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.+.++++.+|.+++.||+....+. ...+.+.+.|++.|+++.+ ..+... .....+...+..+++ ++|+||-.+.+
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGGG 155 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGE--ASLVELDKLRKQCPD-DTQVIIGVGGG 155 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSC--CCHHHHHHHHTTSCT-TCCEEEEEESH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCCc
Confidence 355677777866999998654433 4678888999999988753 233333 344566777777777 99999977654
Q ss_pred --hhHHHHHHHHHHcCCcccceEEEEeC
Q 003167 142 --RTGLMVFDVAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 142 --~~~~~i~~~a~~~g~~~~~~~~i~~~ 167 (843)
-|+..++.. ..| -.++-|.|.
T Consensus 156 SviD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 156 KTMDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHHHHH--hcC---CCEEEEeCC
Confidence 455555542 223 345666665
No 321
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=42.60 E-value=91 Score=28.43 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=39.0
Q ss_pred EEEEEEecCC-----CCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc
Q 003167 74 EVIAIFNDDD-----QGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 139 (843)
Q Consensus 74 ~v~ii~~d~~-----~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 139 (843)
+++||...|+ .-......+.+.+++.|+.+.....++.+ ..++...+.++.+ ++|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHh-cCCEEEEcC
Confidence 5667665432 22245667777888888888877766655 6666666666543 367777654
No 322
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=42.50 E-value=35 Score=33.59 Aligned_cols=77 Identities=5% Similarity=-0.016 Sum_probs=53.9
Q ss_pred CcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHH
Q 003167 72 WGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 149 (843)
Q Consensus 72 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~ 149 (843)
-+.|+++..+ +.|.....+.+.+++++.|..+.... .. .+.......++.+.+.++|.||+..... ..++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~~ 79 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGN---SD--NDIKKAQGYLATFVSHNCTGMISTAFNE---NIIE 79 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECGGGH---HHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEecCCh---HHHH
Confidence 3568888864 66788889999999999999877532 22 2345566778888889999999977332 3456
Q ss_pred -HHHHcCC
Q 003167 150 -VAQRLGM 156 (843)
Q Consensus 150 -~a~~~g~ 156 (843)
.+.+.|+
T Consensus 80 ~~l~~~~i 87 (277)
T 3e61_A 80 NTLTDHHI 87 (277)
T ss_dssp HHHHHC-C
T ss_pred HHHHcCCC
Confidence 6667664
No 323
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=42.15 E-value=57 Score=33.58 Aligned_cols=65 Identities=3% Similarity=-0.068 Sum_probs=44.9
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc
Q 003167 71 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 139 (843)
Q Consensus 71 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 139 (843)
.-+.|+++..+ +.|.......+.+++++.|..+..... .. .+.......+..+.+.++|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV--ER--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC--CS--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC--CC--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 34678888864 456677888999999999998775432 11 1134445667788888999988864
No 324
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=41.90 E-value=46 Score=33.95 Aligned_cols=79 Identities=5% Similarity=-0.014 Sum_probs=54.6
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCC--CeEEEEEcChhh-HHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME--ARVIVVHGYSRT-GLMV 147 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~--~~viv~~~~~~~-~~~i 147 (843)
++|+++.. ++.|.......+.+++++.|..+..... . .+.......++.+.+.+ +|.||+...... ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 57888886 4567778889999999999998765421 2 22444456677777778 999988765443 3356
Q ss_pred HHHHHHcCC
Q 003167 148 FDVAQRLGM 156 (843)
Q Consensus 148 ~~~a~~~g~ 156 (843)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 677766664
No 325
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=41.63 E-value=39 Score=33.67 Aligned_cols=79 Identities=9% Similarity=-0.089 Sum_probs=53.2
Q ss_pred CcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHH---HHHHHhcCCCeEEEEEcChhhHHH
Q 003167 72 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRN---ELVKVRMMEARVIVVHGYSRTGLM 146 (843)
Q Consensus 72 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~---~l~~i~~~~~~viv~~~~~~~~~~ 146 (843)
-+.|+++.. ++.|.....+.+.+++++.|..+.... .. .+...... .++.+.+.++|.||+...... ..
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 81 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVAT---GC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DE 81 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEEC---CC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HH
Confidence 457888875 456777889999999999999876532 12 12233345 677888889999998765433 23
Q ss_pred HHHHHHHcCC
Q 003167 147 VFDVAQRLGM 156 (843)
Q Consensus 147 i~~~a~~~g~ 156 (843)
.++.+.+.|.
T Consensus 82 ~~~~l~~~~i 91 (290)
T 2rgy_A 82 DLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHhhcCC
Confidence 4556666564
No 326
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=41.18 E-value=39 Score=33.22 Aligned_cols=78 Identities=8% Similarity=0.029 Sum_probs=53.1
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~ 150 (843)
+.|+++.. ++.|.......+.+++++.|..+.... .. .+.......+..+...++|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGY---SD--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEE---CT--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEc---CC--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 46888876 356777888999999999998876432 12 22444556778888889998888764322 235566
Q ss_pred HHHcCC
Q 003167 151 AQRLGM 156 (843)
Q Consensus 151 a~~~g~ 156 (843)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666564
No 327
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=40.88 E-value=1.3e+02 Score=28.02 Aligned_cols=69 Identities=10% Similarity=-0.050 Sum_probs=40.6
Q ss_pred EeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeecCCCCchHHHHHHHHhh
Q 003167 629 VALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILTL 699 (843)
Q Consensus 629 ~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~~l 699 (843)
..+++.+...+++..|.--+++..... ...+.. ..+..+.. ......++++.+++.+....+...+..+
T Consensus 140 ~~~~~~~~~~~~v~~G~Gia~lp~~~~-~~~l~~-g~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 210 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEKGLALLPDFMA-QFSILR-GDIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWL 210 (218)
T ss_dssp BCCSSHHHHHHHHHTTCCBEEEEHHHH-HHHHHT-TSEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCCCEEEecHHHH-HHHHHC-CCccccCccccCCCceEEEEeccccCCCHHHHHHHHHH
Confidence 456888999999999877677654433 222222 33433322 1223467788888876666555554433
No 328
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=40.82 E-value=92 Score=30.39 Aligned_cols=84 Identities=10% Similarity=0.031 Sum_probs=61.2
Q ss_pred HHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--
Q 003167 63 IAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY-- 140 (843)
Q Consensus 63 i~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~-- 140 (843)
++++.+ -|-.-+.+++ |..|..+..+.+.+.-+...+.|..+. |-.+ .-++.+.+..++|+|++.+.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKD-Fiid--------~yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSD-FIVK--------ESQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEES-CCCS--------HHHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecc-cccc--------HHHHHHHHHcCCCeeehHHhhc
Confidence 445444 4777788887 666888888888888777787776543 3233 23577788899999988654
Q ss_pred -hhhHHHHHHHHHHcCCc
Q 003167 141 -SRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 141 -~~~~~~i~~~a~~~g~~ 157 (843)
..+...+...|.++||.
T Consensus 138 ~~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 138 TERELESLLEYARSYGME 155 (258)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhHH
Confidence 45678899999999985
No 329
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=40.78 E-value=41 Score=33.39 Aligned_cols=80 Identities=5% Similarity=-0.022 Sum_probs=53.3
Q ss_pred CCcEEEEEEec--C--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 003167 71 GWGEVIAIFND--D--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 146 (843)
Q Consensus 71 ~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~ 146 (843)
+-+.|+++..+ + .|.......+.+++++.|..+..... . .........+..+.+.++|.||+....... .
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---I--HAKDSMVPIRYILETGSADGVIISKIEPND-P 80 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---S--SGGGTTHHHHHHHHHTCCSEEEEESCCTTC-H
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---C--cchhHHHHHHHHHHcCCccEEEEecCCCCc-H
Confidence 44678888874 3 67788899999999999998775422 1 112333445555667899999887643222 3
Q ss_pred HHHHHHHcCC
Q 003167 147 VFDVAQRLGM 156 (843)
Q Consensus 147 i~~~a~~~g~ 156 (843)
.++.+.+.|.
T Consensus 81 ~~~~l~~~~i 90 (288)
T 3gv0_A 81 RVRFMTERNM 90 (288)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhhCCC
Confidence 5666767665
No 330
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=40.54 E-value=90 Score=32.82 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=67.3
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCC-CCChhHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNELV 125 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~d~~~~l~ 125 (843)
||-+...+....+. . +++.++.+++.+|+....+. ...+.+.+.|++.|+++... .++.+. ..+...+...+.
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHH
Confidence 45445554433222 2 44455779999999766543 37788889999999876532 233220 123567777788
Q ss_pred HHhcCCC---eEEEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeC
Q 003167 126 KVRMMEA---RVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 126 ~i~~~~~---~viv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~ 167 (843)
.+++.++ |+||..+.+ -|...++......| -+++-|.|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 8888777 688877654 35555554443434 345555554
No 331
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=40.12 E-value=20 Score=36.07 Aligned_cols=58 Identities=7% Similarity=0.079 Sum_probs=40.5
Q ss_pred cccchhhHHHHHHHHhhcccc----ccccc----chhHHHHHHHHHHHHHHhhhhcceeeeeeecc
Q 003167 530 RKQIVTVLWFSFSTMFFAHRE----NTVST----LGRVVLIIWLFVVLIITSSYTASLTSILTVQQ 587 (843)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~----~~~s~----~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 587 (843)
..++.+++|..+.++...|-. .|... ..+++..+..+.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999877533 24322 23666667777789999999999988776544
No 332
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=39.83 E-value=20 Score=35.78 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=53.1
Q ss_pred cEEEEEEec----CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHH
Q 003167 73 GEVIAIFND----DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMV 147 (843)
Q Consensus 73 ~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i 147 (843)
++|+++..+ +.|.......+++++++.|..+.....- .. .+.......++.+.+.++|.||+...... ....
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~ 82 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPE-KE--EDYLVQNELIEEAIKRKPDVILLAAADYEKTYDA 82 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-ST--TCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHH
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCC-CC--CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHH
Confidence 568888763 5677788899999999999887653210 01 22444556777888889999988765433 2245
Q ss_pred HHHHHHcCC
Q 003167 148 FDVAQRLGM 156 (843)
Q Consensus 148 ~~~a~~~g~ 156 (843)
++++.+.|.
T Consensus 83 ~~~~~~~~i 91 (289)
T 3brs_A 83 AKEIKDAGI 91 (289)
T ss_dssp HTTTGGGTC
T ss_pred HHHHHHCCC
Confidence 555555453
No 333
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.82 E-value=46 Score=33.43 Aligned_cols=79 Identities=6% Similarity=-0.078 Sum_probs=53.7
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
.+|+++.. ++.|.......+++++++.|..+..... . .+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 46888876 3556777888899999999998775421 2 22444556677777788999988765432 234566
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6766664
No 334
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=39.34 E-value=37 Score=33.98 Aligned_cols=79 Identities=3% Similarity=-0.113 Sum_probs=54.5
Q ss_pred CcEEEEEEe-------cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhH
Q 003167 72 WGEVIAIFN-------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTG 144 (843)
Q Consensus 72 w~~v~ii~~-------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~ 144 (843)
-+.|+++.. ++.|.......+.+++++.|..+... ... .+.......++.+.+.++|.||+......
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 80 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSN--NMNDLMDEVYKMIKQRMVDAFILLYSKEN- 80 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCSEEEESCCCTT-
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCC--CChHHHHHHHHHHHhCCcCEEEEcCcccC-
Confidence 357888872 46788888999999999999987642 222 22334456677888899999998754322
Q ss_pred HHHHHHHHHcCC
Q 003167 145 LMVFDVAQRLGM 156 (843)
Q Consensus 145 ~~i~~~a~~~g~ 156 (843)
...++.+.+.|.
T Consensus 81 ~~~~~~l~~~~i 92 (295)
T 3hcw_A 81 DPIKQMLIDESM 92 (295)
T ss_dssp CHHHHHHHHTTC
T ss_pred hHHHHHHHhCCC
Confidence 245666666664
No 335
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=38.93 E-value=52 Score=33.04 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=48.0
Q ss_pred cEEEEEEec---C-CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 73 GEVIAIFND---D-DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 73 ~~v~ii~~d---~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.+|++|+.+ + .|.....+.+.+.+++.|.++..... . ....+....++.+.+.++|.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEG---V--NSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECC---C--CSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeC---C--CCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 578888852 4 78888899999999999998775432 1 124566678888888999999987643
No 336
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=38.88 E-value=45 Score=34.34 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred cccchhhHHHHHHHHhhcccc--c--ccccchhHHHHHHHHHHHHHHhhhhcceeeeeeecccc
Q 003167 530 RKQIVTVLWFSFSTMFFAHRE--N--TVSTLGRVVLIIWLFVVLIITSSYTASLTSILTVQQLS 589 (843)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~--~--~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 589 (843)
..++..+|||++.++.--|.. . |.++.++++..+-.+.++++.+.-++-+.+-++.++..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 356899999999999977644 3 35788999999999999999999999888888776643
No 337
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=38.68 E-value=83 Score=29.20 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=47.3
Q ss_pred HcCCcEEEEEEecCC-----CCcchHHHHHHHHHh---cCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEc
Q 003167 69 YFGWGEVIAIFNDDD-----QGRNGVTALGDKLAE---IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHG 139 (843)
Q Consensus 69 ~~~w~~v~ii~~d~~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~ 139 (843)
-+.--+++||...|+ .-......+.+.+++ .|.++.....++.+ ..++...+.+..+ .++|+||..+
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 344457888876443 223445678888887 79998887777765 7788888887754 4799999876
Q ss_pred C
Q 003167 140 Y 140 (843)
Q Consensus 140 ~ 140 (843)
.
T Consensus 87 G 87 (189)
T 1jlj_A 87 G 87 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 338
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=38.50 E-value=1.2e+02 Score=28.74 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=59.2
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEE--EcChh----hHHH
Q 003167 73 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVV--HGYSR----TGLM 146 (843)
Q Consensus 73 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~--~~~~~----~~~~ 146 (843)
.+|.+-....+...-+...+...|+..|.+|.+-- .+ .....++..+++.+||+|.+ .+... ....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG---~~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLG---VD-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECC---SS-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcC---CC-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 46666666777777788888999999999987532 11 22455677888899999999 65433 3456
Q ss_pred HHHHHHHcCCcccceEEEEe
Q 003167 147 VFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 147 i~~~a~~~g~~~~~~~~i~~ 166 (843)
+++++++.|....-.+|+++
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEES
T ss_pred HHHHHHHcCCCCCCEEEEEC
Confidence 77788887764233456654
No 339
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.35 E-value=1.9e+02 Score=25.94 Aligned_cols=94 Identities=6% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeec--CCCCCCChhHHHHHHHHHh-cCCCeEEEEE
Q 003167 62 AIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSAL--PPDQSVTETDVRNELVKVR-MMEARVIVVH 138 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~~~~~~~~d~~~~l~~i~-~~~~~viv~~ 138 (843)
.+.+.+...|--..+..|. +..+......+.++|...|+++...... ..+...+..|+.-.+.-+. ....|.+++.
T Consensus 37 ~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred HHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 4444444444334455553 2223356778999999999988754221 1110123455443333221 2567889888
Q ss_pred cChhhHHHHHHHHHHc-CC
Q 003167 139 GYSRTGLMVFDVAQRL-GM 156 (843)
Q Consensus 139 ~~~~~~~~i~~~a~~~-g~ 156 (843)
+...+...+++.+++. |.
T Consensus 116 SgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 116 SGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp CCCGGGHHHHHHHHHHHCC
T ss_pred ECChhHHHHHHHHHHHcCc
Confidence 8888999999999994 84
No 340
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=38.31 E-value=80 Score=32.45 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=55.7
Q ss_pred CCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 71 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 71 ~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
.-+.|+++.. ++.|.......+.+++++.|..+..... . .+.......+..+.+.++|.||+....... ..+
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~ 142 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---A--YSPEREEQLVETMLRRRPEAMVLSYDGHTE-QTI 142 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHH
Confidence 4467999886 4567778899999999999998875421 1 224455677788888999999987654332 456
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+.+.+.|+
T Consensus 143 ~~l~~~~i 150 (355)
T 3e3m_A 143 RLLQRASI 150 (355)
T ss_dssp HHHHHCCS
T ss_pred HHHHhCCC
Confidence 66777665
No 341
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.23 E-value=68 Score=32.49 Aligned_cols=80 Identities=6% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CcEEEEEEec-CCCCcchHHHHHHHHHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHH
Q 003167 72 WGEVIAIFND-DDQGRNGVTALGDKLAEI-RCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVF 148 (843)
Q Consensus 72 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~ 148 (843)
-.+|+++..+ +.|.......+.+++++. |..+..... . .+.......+..+.+.++|.||+...... ....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 4578888764 345566778888888888 988775431 2 22444556677888889999998765443 24566
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+++.+.|.
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77776664
No 342
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=37.77 E-value=52 Score=32.78 Aligned_cols=78 Identities=8% Similarity=0.078 Sum_probs=54.4
Q ss_pred CcEEEEEEe------cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHH
Q 003167 72 WGEVIAIFN------DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGL 145 (843)
Q Consensus 72 w~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~ 145 (843)
-+.|+++.. ++.|.......+.+++++.|..+.....-. .......++.+.+.++|.||+.......
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 78 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED- 78 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC-
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh-
Confidence 467888886 456777889999999999999887654322 2233456677777899999987654322
Q ss_pred HHHHHHHHcCC
Q 003167 146 MVFDVAQRLGM 156 (843)
Q Consensus 146 ~i~~~a~~~g~ 156 (843)
..++.+.+.|+
T Consensus 79 ~~~~~l~~~~i 89 (294)
T 3qk7_A 79 FRLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 45666777665
No 343
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=37.43 E-value=1.6e+02 Score=23.79 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=63.9
Q ss_pred eEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHh
Q 003167 49 FVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVR 128 (843)
Q Consensus 49 ~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~ 128 (843)
+|-+..+|...-+.++.-++..| -+|.++|+|.+- .....-.+.+++.|+.+-.. .+..||+.-+..|-
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqde--krrrerleefekqgvdvrtv--------edkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV--------EDKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC--------CSHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH--HHHHHHHHHHHHcCCceeee--------ccHHHHHHHHHHHH
Confidence 34455677777777777777777 467888987652 22223345677789876532 13788988888876
Q ss_pred c--CCCeEEEEEcC-h-hhHHHHHHHHHHcCC
Q 003167 129 M--MEARVIVVHGY-S-RTGLMVFDVAQRLGM 156 (843)
Q Consensus 129 ~--~~~~viv~~~~-~-~~~~~i~~~a~~~g~ 156 (843)
. .+-|++++... . +-...++..|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 5 45666665543 3 335678999999885
No 344
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.15 E-value=1.5e+02 Score=23.27 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=43.1
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 126 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 126 (843)
.+-.|+.-+....-+.+-++++.|+-+-|.++.+|.+|.+..+ .-.+..|.+|... .+..+ .......-.+
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkewaekai----rfvkslgaqvlii-iydqd----qnrleefsre 96 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAI----RFVKSLGAQVLII-IYDQD----QNRLEEFSRE 96 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHH----HHHHHHCCCCEEE-EECSC----HHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHH----HHHHhcCCeEEEE-EEeCc----hhHHHHHHHH
Confidence 3557777777777777777888888777776665555433222 2223334443322 22222 4444444445
Q ss_pred HhcCCCeEE
Q 003167 127 VRMMEARVI 135 (843)
Q Consensus 127 i~~~~~~vi 135 (843)
++..+-.+=
T Consensus 97 vrrrgfevr 105 (134)
T 2l69_A 97 VRRRGFEVR 105 (134)
T ss_dssp HHHTTCCEE
T ss_pred HHhcCceEE
Confidence 555555443
No 345
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=37.13 E-value=84 Score=31.27 Aligned_cols=83 Identities=7% Similarity=-0.127 Sum_probs=54.6
Q ss_pred HHHHcCCcEEEEEEec--CCCCc-chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 66 MVSYFGWGEVIAIFND--DDQGR-NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 66 ll~~~~w~~v~ii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
-|+.-+-+.|+++..+ +.|.. ...+.+.+++++.|..+..... . .+.......++.+.+.++|.||+.....
T Consensus 7 ~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 7 LIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---G--GSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp -----CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 3444456789999874 46777 8999999999999998875432 2 2345556778888889999998876543
Q ss_pred hHHHHHHHHHHcC
Q 003167 143 TGLMVFDVAQRLG 155 (843)
Q Consensus 143 ~~~~i~~~a~~~g 155 (843)
.. .++.+.+.|
T Consensus 82 ~~--~~~~~~~~~ 92 (301)
T 3miz_A 82 RI--VDPESGDVS 92 (301)
T ss_dssp EE--CCCCCTTCC
T ss_pred cH--HHHHHHhCC
Confidence 22 333444444
No 346
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=37.00 E-value=3.1e+02 Score=26.91 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHHHHH---HH-CCCcccEEEEeCCCCCCCCChHHHHHHHHc-C-cccEEEeceeeecC---cceeeeecccccccce
Q 003167 405 IDVFLAAV---RL-LPYAVPYKFIPYGDGHKNPTYSELINQITT-G-VFDAAVGDIAIVTN---RTKAVDFTQPYIESGL 475 (843)
Q Consensus 405 ~dl~~~i~---~~-l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~-g-~~Di~~~~~~i~~~---r~~~vdfs~p~~~~~~ 475 (843)
-++++.+. ++ -|.++++.... ++-..++.++.. | .+|+.+.+-....+ .....+...||....+
T Consensus 20 ~~~~~~F~~~~~~~~gi~V~~~~~~-------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 92 (296)
T 3cg1_A 20 QEVEKEFSEYAERNLGIKVSFQDEA-------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEI 92 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEE-------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeec-------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccE
Confidence 35777777 66 68776651122 335678888887 5 58998763211111 1112245678888888
Q ss_pred EEEEeccC
Q 003167 476 VVVAPVRK 483 (843)
Q Consensus 476 ~~~v~~~~ 483 (843)
++++++..
T Consensus 93 vi~~~~~~ 100 (296)
T 3cg1_A 93 VIAFTDKS 100 (296)
T ss_dssp EEEECTTS
T ss_pred EEEEcCCC
Confidence 88887654
No 347
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=36.88 E-value=1.4e+02 Score=29.48 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHH-HHHHHHHcCCcEEEEEEe
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSA-IAEMVSYFGWGEVIAIFN 80 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~a-i~~ll~~~~w~~v~ii~~ 80 (843)
+.++.+|+=+-+|..+.++..+-+..++|+|.. ..+ +...+..-+-++|+++..
T Consensus 67 ~~g~d~IViACNTas~~~l~~lr~~~~iPVigi-------------------------iep~~~~A~~~~~~~rIgVlaT 121 (276)
T 2dwu_A 67 QFPLKALVVACNTAAAATLAALQEALSIPVIGV-------------------------IHPGARAAIKVTKKGKIGVIGT 121 (276)
T ss_dssp TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSSEEEEEEC
T ss_pred HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEec-------------------------cHHHHHHHHHhcCCCeEEEEeC
Confidence 357888887766666566667777778888742 111 112223346688999875
Q ss_pred cCCCCcchHHHHHHHHHhc--CcEEEEeeecCC-------CCC---CChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 81 DDDQGRNGVTALGDKLAEI--RCKISYKSALPP-------DQS---VTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 81 d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~~~---~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
....-. ..+.+.+++. +.+|... ..+. +.. .....+...+..+++.++|+||+.|..
T Consensus 122 ~~T~~s---~~y~~~i~~~~~~~~v~~~-~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh 190 (276)
T 2dwu_A 122 VGTIQS---NMYEKALHELDTYLKVHSH-ACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTH 190 (276)
T ss_dssp HHHHHT---THHHHHHHHHCTTCEEEEE-ECTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTT
T ss_pred hhhhhh---HHHHHHHHHhCCCCEEEee-eCHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 432111 1344455543 4555422 2221 000 001234455666666788888887654
No 348
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=36.39 E-value=63 Score=32.04 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=53.4
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
+.|+++.. ++.|.....+.+.+++++.|..+..... ... .+...-...++.+...++|.||+...... ....++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSE--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SST--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 46788875 4667778889999999999988765431 011 12344455677777888999988654332 234566
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7766664
No 349
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=36.36 E-value=1.5e+02 Score=24.54 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHHcC
Q 003167 88 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 155 (843)
Q Consensus 88 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~~g 155 (843)
....+.+.+++.|..+... .+....+..+++..+|+|++.... .++..+++++++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEIA-----------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 5667778888888766521 123445666777889999997653 45777888888754
No 350
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=36.32 E-value=1e+02 Score=30.58 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc-
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG- 139 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~- 139 (843)
..++.-...-|-..+.++. |..|..+..+.+.+.-+..++.|.... +-.+ ++ ++...+..++|.|++..
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fiid------~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FVVQ------PY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CCCS------HH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-cccC------HH--HHHHHHHcCCCEEEEecc
Confidence 4566666777999999887 445656666667666566677776443 2222 11 46677789999999853
Q ss_pred --ChhhHHHHHHHHHHcCCc
Q 003167 140 --YSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 140 --~~~~~~~i~~~a~~~g~~ 157 (843)
...+...+...+++.||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 455677788999998874
No 351
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.97 E-value=1e+02 Score=30.35 Aligned_cols=79 Identities=6% Similarity=-0.052 Sum_probs=53.5
Q ss_pred CCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 71 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 71 ~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
.-++|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....... ..+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 80 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TE--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PEL 80 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHH
Confidence 3467898886 466778889999999999999876542 12 224445566788888899999987643322 344
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+.+. .|.
T Consensus 81 ~~l~-~~i 87 (285)
T 3c3k_A 81 QNII-GAF 87 (285)
T ss_dssp HHHH-TTS
T ss_pred HHHh-cCC
Confidence 5555 554
No 352
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.72 E-value=72 Score=31.43 Aligned_cols=65 Identities=6% Similarity=-0.104 Sum_probs=47.2
Q ss_pred CcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 72 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 72 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
-++|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CC--CChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 357888886 456777888999999999998877532 22 234555667788888899999887643
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=35.29 E-value=15 Score=35.29 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=28.9
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSF 34 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~ 34 (843)
.+|+.|+||..|+=+.....+++++++|.||.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 36889999999999998899999999999974
No 354
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=35.28 E-value=24 Score=34.86 Aligned_cols=71 Identities=4% Similarity=-0.107 Sum_probs=43.3
Q ss_pred cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeecCCCCchHHHHHHHHh
Q 003167 626 SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAILT 698 (843)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~~ 698 (843)
.....+++.+.....+..|..-+++.+.....+. .. ..+..+.. ......++++.+++.+....+...+..
T Consensus 212 ~~~~~~~~~~~~~~~v~~g~Giailp~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~ 284 (291)
T 3szp_A 212 RGRFQASALNVVRSACSEGLGITLMPDVMLREFL-ED-GSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDF 284 (291)
T ss_dssp CCSEEESSHHHHHHHHHTTCCEEEEEGGGTHHHH-HT-TTSEECCTTCBCCCEEEEEEECCGGGCCHHHHHHHHH
T ss_pred cCceEECcHHHHHHHHHcCCcEEEccHHHHHHHH-hC-CCeEEecCCccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 3445678899999999998887777655444433 22 23333322 233456788888886655555544433
No 355
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=35.22 E-value=93 Score=30.69 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=58.8
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHHHHH-HHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSAIAE-MVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~ai~~-ll~~~~w~~v~ii~~d 81 (843)
.++.+|+=+-++..+.++..+-+..++|+|.. ..+.++ .+...+-++|+++...
T Consensus 64 ~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~ep~~~~A~~~~~~~rIgVlaT~ 118 (267)
T 2gzm_A 64 LNIKMLVIACNTATAVVLEEMQKQLPIPVVGV-------------------------IHPGSRTALKVTNTYHVGIIGTI 118 (267)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSCEEEEEECH
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCCEEee-------------------------cHHHHHHHHHccCCCEEEEEECh
Confidence 46777877666666556667777788888852 122222 2233466788888643
Q ss_pred CCCCcchHHHHHHHHHhc--CcEEEEeeecC-------CCCCC---ChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 82 DDQGRNGVTALGDKLAEI--RCKISYKSALP-------PDQSV---TETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~-------~~~~~---~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.. -....+++.+++. |++|.... -+ .+... ....+...+..+.+.++|+||+.|..
T Consensus 119 ~T---~~~~~y~~~l~~~~~g~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGCTh 186 (267)
T 2gzm_A 119 GT---VKSGAYEEALKSINNRVMVESLA-CPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTH 186 (267)
T ss_dssp HH---HHHTHHHHHHHHHCTTCEEEEEE-CTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECSTT
T ss_pred HH---hccHHHHHHHHHhCCCCEEeccC-CHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcccC
Confidence 21 1122466666666 66655321 11 11000 01233444555555677777776543
No 356
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=35.14 E-value=51 Score=32.70 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEec
Q 003167 405 IDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGD 453 (843)
Q Consensus 405 ~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~ 453 (843)
..++..+.+.+|+++++... ++ .-+...|.+|++|+.+..
T Consensus 181 ~~v~~~~Le~~Gy~Ve~~~~--------~~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 181 TNVIGKVLEDLGYEVTLTQV--------EA-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp HHHHHHHHHHHTCEEEEEEC--------CT-THHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEC--------Ch-HHHHHHHHCCCCeEEehh
Confidence 34566666778988776653 22 556788999999998664
No 357
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=34.31 E-value=26 Score=35.01 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.5
Q ss_pred ccchhhHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHhhhhcceeeeee
Q 003167 531 KQIVTVLWFSFSTMFFAHRE--NTVSTLGRVVLIIWLFVVLIITSSYTASLTSILT 584 (843)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~--~~~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 584 (843)
-++.+++||++.++.--|.. .|.+..+|++.+++.++++.+...+.+.+...+.
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999877643 7899999999999999999999888888765443
No 358
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=34.28 E-value=52 Score=32.59 Aligned_cols=78 Identities=3% Similarity=-0.119 Sum_probs=51.4
Q ss_pred cEEEEEEec------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHH
Q 003167 73 GEVIAIFND------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLM 146 (843)
Q Consensus 73 ~~v~ii~~d------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~ 146 (843)
+.|+++..+ +.|.....+.+.+++++.|..+.... .. .+.......++.+.+.++|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FS--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CC--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CC--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 467777644 46777889999999999998876532 11 112333456778888899999987643222 3
Q ss_pred HHHHHHHcCC
Q 003167 147 VFDVAQRLGM 156 (843)
Q Consensus 147 i~~~a~~~g~ 156 (843)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 4566666664
No 359
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.87 E-value=1.1e+02 Score=27.50 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=43.4
Q ss_pred cEEEEEEecCCC-----CcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 73 GEVIAIFNDDDQ-----GRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~~d~~~-----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
-+++||...|+- -......+.+.+++.|.++.....++ + + .++...+.+..+.++|+|+..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~-D---d-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA-D---G-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC-S---S-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC-C---H-HHHHHHHHHHHhCCCCEEEECCC
Confidence 467777764431 23456788889999999988765553 3 4 66777777766567999998753
No 360
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.64 E-value=38 Score=33.83 Aligned_cols=80 Identities=9% Similarity=-0.051 Sum_probs=55.2
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhh-HHHHHH
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRT-GLMVFD 149 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~-~~~i~~ 149 (843)
++|+++.. ++.|.......+.+++++.|..+.....-.. .+.......++.+.+.++|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 57888886 3667788899999999999998876432211 13455667778888889999998765433 233466
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
++. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 665 554
No 361
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=33.39 E-value=38 Score=33.72 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=47.9
Q ss_pred CcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHH
Q 003167 72 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 149 (843)
Q Consensus 72 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~ 149 (843)
-++|+++.. ++.|.......+.+++++.|.++... +... .+.......++.+...++|.||+....... ..++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 82 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGS--ADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQ 82 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCC--CCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHH
Confidence 357888875 46677888999999999999887653 0111 112233456777778899999887654322 3455
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 5655553
No 362
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=33.31 E-value=2.1e+02 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=43.6
Q ss_pred cEEEEEEecCCC--Cc---chHHHHHHHHHhc-----CcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcC
Q 003167 73 GEVIAIFNDDDQ--GR---NGVTALGDKLAEI-----RCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~ 140 (843)
-+|+||...|+- |+ .....+.+.+++. |.++.....++.+ ..++...+++..+ .++|+||..+.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 467777764321 11 1234566777777 8988887777655 7788888888765 57999998764
No 363
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=33.20 E-value=38 Score=33.48 Aligned_cols=70 Identities=9% Similarity=-0.056 Sum_probs=41.9
Q ss_pred cceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHHHhcCCCeEEeCC--ccccCcceeeecCCCCchHHHHHHHH
Q 003167 626 SRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSDHCQFSVRGQ--EFTKSGWGFAFPRDSPLAIDMSTAIL 697 (843)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~k~spl~~~in~~i~ 697 (843)
.....+++.+.....+..|..-+++.+.....+ ... ..+..+.. ......++++.+++.+....+...+.
T Consensus 214 ~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~-~~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~ 285 (300)
T 3mz1_A 214 RYTMAANESTTYLAAARAGLGVIQAPLFMVRED-LRN-GTMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFAD 285 (300)
T ss_dssp CEEEEESSHHHHHHHHHTTCCBEEEEHHHHHHH-HHH-TSEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHHH
T ss_pred cceEEECCHHHHHHHHHhCCCEEeccHHHHHHH-HhC-CCeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHHH
Confidence 445667899999999999877666654433333 222 23444432 23445677888888665555444443
No 364
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=33.17 E-value=2.5e+02 Score=28.55 Aligned_cols=76 Identities=13% Similarity=0.034 Sum_probs=49.7
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHH
Q 003167 73 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 73 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~ 152 (843)
+++.+|+.-..-.....+.+.+.+++.|+.+....+-. ..+......++...++|.||+.+.......+++.+.
T Consensus 30 ~~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~------~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWE------KGDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCS------TTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecC------cchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 67888885322111456778888999998776544322 223344445555567899999888888888888876
Q ss_pred Hc
Q 003167 153 RL 154 (843)
Q Consensus 153 ~~ 154 (843)
+.
T Consensus 104 ~~ 105 (332)
T 2bon_A 104 QC 105 (332)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 365
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=32.91 E-value=73 Score=31.61 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=44.1
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCCChHHhHHH-HHHHHHHcCCcEEEEEEec
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAPNDLYLMSA-IAEMVSYFGWGEVIAIFND 81 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p~d~~~~~a-i~~ll~~~~w~~v~ii~~d 81 (843)
.++.+|+=+-+|..+.++..+-+..++|+|.. ..+ +...+...+-++|+++...
T Consensus 73 ~g~d~iviaCNTas~~~l~~lr~~~~iPvigi-------------------------~epa~~~A~~~~~~~rIgVlaT~ 127 (273)
T 2oho_A 73 QNVKMIVFACNTATAVAWEEVKAALDIPVLGV-------------------------VLPGASAAIKSTTKGQVGVIGTP 127 (273)
T ss_dssp TTCSEEEECCHHHHHHHHHHHHHHCSSCEEES-------------------------HHHHHHHHHHHCSSSEEEEEECH
T ss_pred CCCCEEEEeCchHhHHHHHHHHHhCCCCEEec-------------------------cHHHHHHHHHhcCCCeEEEEECc
Confidence 46777777666665555666767778888752 111 2222334567899998754
Q ss_pred CCCCcchHHHHHHHHHhc--CcEEEE
Q 003167 82 DDQGRNGVTALGDKLAEI--RCKISY 105 (843)
Q Consensus 82 ~~~g~~~~~~l~~~l~~~--g~~v~~ 105 (843)
.. -....+++.+++. |++|..
T Consensus 128 ~T---~~~~~y~~~l~~~~~g~~v~~ 150 (273)
T 2oho_A 128 MT---VASDIYRKKIQLLAPSIQVRS 150 (273)
T ss_dssp HH---HHHTHHHHHHHHHCTTSEEEE
T ss_pred hh---hcchHHHHHHHHhCCCCEEEe
Confidence 21 1123456666666 777653
No 366
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.82 E-value=1.6e+02 Score=28.24 Aligned_cols=108 Identities=16% Similarity=0.301 Sum_probs=67.4
Q ss_pred cEEecccCCCCCCC-CCCCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeee
Q 003167 30 PLLSFTALDPTLSP-LQYPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA 108 (843)
Q Consensus 30 P~Is~~at~~~ls~-~~~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~ 108 (843)
.+||=|++...+.+ ..-| +.-+..+.....+++...-+ ++ +++++|...+.. ...+.+.+. .|.++....
T Consensus 66 VIISRGgta~~Lr~~~~iP-VV~I~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~l---l~~~i~~~~- 136 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVP-VILIKPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKT---FNLRLDQRS- 136 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSC-EEEECCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHH---HTCCEEEEE-
T ss_pred EEEeCChHHHHHHhhCCCC-EEEecCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHH---hCCceEEEE-
Confidence 56776776665554 2223 55566676666666666543 33 589998865431 223444443 355555432
Q ss_pred cCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHcCCc
Q 003167 109 LPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRLGMM 157 (843)
Q Consensus 109 ~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~g~~ 157 (843)
+ .+..|....++++++.+.++||-.+. ..+.|+++|+.
T Consensus 137 ~-----~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 137 Y-----ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGMT 174 (225)
T ss_dssp E-----SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTSE
T ss_pred e-----CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCCc
Confidence 2 23778999999999999999876432 35667888874
No 367
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=32.56 E-value=76 Score=32.60 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=53.0
Q ss_pred cEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHH
Q 003167 73 GEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~ 150 (843)
+.|+++..+ +.|.....+.+.+++++.|..+..... . .+.......++.+...++|.||+....... ..++.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 140 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---N--EDATTMSGSLEFLTSHGVDGIICVPNEECA-NQLED 140 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---T--TCHHHHHHHHHHHHHTTCSCEEECCCGGGH-HHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHH
Confidence 468888863 567778889999999999988765321 2 224445567788888899999887654332 45566
Q ss_pred HHHcCC
Q 003167 151 AQRLGM 156 (843)
Q Consensus 151 a~~~g~ 156 (843)
+.+.|.
T Consensus 141 l~~~~i 146 (348)
T 3bil_A 141 LQKQGM 146 (348)
T ss_dssp HHHC-C
T ss_pred HHhCCC
Confidence 666564
No 368
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.50 E-value=58 Score=33.11 Aligned_cols=79 Identities=10% Similarity=-0.035 Sum_probs=53.2
Q ss_pred CcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHH
Q 003167 72 WGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFD 149 (843)
Q Consensus 72 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~ 149 (843)
-+.|+++.. ++.|.....+.+.+++++.|..+.... .. .+.......++.+...++|.||+....... ..++
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 133 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SD--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVE 133 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CC--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHH
Confidence 357999886 467888889999999999999877532 12 123334556777777899998887643222 3455
Q ss_pred HHHHcCC
Q 003167 150 VAQRLGM 156 (843)
Q Consensus 150 ~a~~~g~ 156 (843)
.+.+.|.
T Consensus 134 ~l~~~~i 140 (332)
T 2hsg_A 134 ELKKSPV 140 (332)
T ss_dssp HHTTSSS
T ss_pred HHHhCCC
Confidence 5555453
No 369
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.76 E-value=40 Score=33.04 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=51.2
Q ss_pred HhHHHHHHHHH-----HcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCC
Q 003167 58 YLMSAIAEMVS-----YFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEA 132 (843)
Q Consensus 58 ~~~~ai~~ll~-----~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~ 132 (843)
..++.+++++. ...-++|.++..+ ...+.+.+.|++.|..|.....|... ....+.......+...+.
T Consensus 114 ~~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~--~~~~~~~~~~~~l~~~~~ 186 (254)
T 4es6_A 114 DDSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRR--APDYPAGELLARVRAERL 186 (254)
T ss_dssp CSHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEE--CCCCCTTHHHHHHHHTTC
T ss_pred CCHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEee--CCCCCHHHHHHHHHhCCC
Confidence 34577777665 3445788776633 34567788899999987665554332 111111223344555677
Q ss_pred eEEEEEcChhhHHHHHHHHH
Q 003167 133 RVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 133 ~viv~~~~~~~~~~i~~~a~ 152 (843)
|+|+ +.++..+..+++.+.
T Consensus 187 d~v~-ftS~s~v~~~~~~~~ 205 (254)
T 4es6_A 187 NGLV-VSSGQGLQNLYQLAA 205 (254)
T ss_dssp CEEE-CCSHHHHHHHHHHHG
T ss_pred CEEE-EcCHHHHHHHHHHhh
Confidence 7765 566666777776654
No 370
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=31.68 E-value=1.8e+02 Score=29.67 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=65.6
Q ss_pred EcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC
Q 003167 51 QTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMM 130 (843)
Q Consensus 51 R~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~ 130 (843)
+..|+....++.+.++++..+-++|.|.++.+. ..+.|++++.+.++.|+. +.+. .+++...--+
T Consensus 259 mClPSle~I~rqIk~~vk~~~lksVFIATDa~~----~~~ELk~~L~~~~v~vv~---~~pe--------~a~ID~~I~~ 323 (362)
T 3zy2_A 259 ICSPSKQQILEQIVEKVGSIGAKSVFVASDKDH----MIDEINEALKPYEIEAHR---QEPD--------DMYTSLAIMG 323 (362)
T ss_dssp HHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC----CHHHHHHHHGGGTCCEEC---CSSC--------CHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHHhhccCceEEE---eCCc--------hhHHHHHHHH
Confidence 346888888899999999999999988874333 578899999887877652 3222 3455555557
Q ss_pred CCeEEEEEcChhhHHHHHHHHHHcC
Q 003167 131 EARVIVVHGYSRTGLMVFDVAQRLG 155 (843)
Q Consensus 131 ~~~viv~~~~~~~~~~i~~~a~~~g 155 (843)
.+|.+|-.+...-...+.++=.-.|
T Consensus 324 ~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 324 RADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred hCCEeecCccccccHHHHHHHHhcC
Confidence 7899998887777776766655556
No 371
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=31.46 E-value=1.2e+02 Score=28.21 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=42.7
Q ss_pred cEEEEEEecCCCC-----cchHHHHHHHHHhcCcE--EEEeeecCCCCCCChhHHHHHHHHHhcC-CCeEEEEEcC
Q 003167 73 GEVIAIFNDDDQG-----RNGVTALGDKLAEIRCK--ISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~~d~~~g-----~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~ 140 (843)
-+++||...|+-. ......+.+.+++.|.. +.....++.+ ...+...|.++.+. ++|+|+..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd----~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDE----QAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3677777654432 23456788888888876 5555555544 67788888777654 7899988764
No 372
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=31.38 E-value=1.1e+02 Score=31.00 Aligned_cols=80 Identities=11% Similarity=-0.037 Sum_probs=54.2
Q ss_pred CCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHH
Q 003167 71 GWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVF 148 (843)
Q Consensus 71 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~ 148 (843)
.-+.|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....... ..+
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 135 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN---SD--NDVEKEEKVLETFLSKQVDGIVYMGSSLDE-KIR 135 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECSSCCCH-HHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE---CC--CChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHH
Confidence 44679999863 56777889999999999999877542 12 224445567788888899999987642221 244
Q ss_pred HHHHHcCC
Q 003167 149 DVAQRLGM 156 (843)
Q Consensus 149 ~~a~~~g~ 156 (843)
+.+.+.|.
T Consensus 136 ~~l~~~~i 143 (332)
T 2o20_A 136 TSLKNSRT 143 (332)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55555554
No 373
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=30.60 E-value=1.3e+02 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEEEEEecCCC--C---cchHHHHHHHHH---hcCcEEEEeeecCCCCCCChhHHHHHHHHHhcC-CCeEEEEEcC
Q 003167 74 EVIAIFNDDDQ--G---RNGVTALGDKLA---EIRCKISYKSALPPDQSVTETDVRNELVKVRMM-EARVIVVHGY 140 (843)
Q Consensus 74 ~v~ii~~d~~~--g---~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~-~~~viv~~~~ 140 (843)
+++||...|+- | ......+.+.++ +.|.++ ....++.+ ..++...+.+..+. ++|+||..+.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCC
Confidence 67777764431 1 233566777666 889998 55566554 77888888887653 7999998764
No 374
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=30.19 E-value=4.3e+02 Score=26.43 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=61.0
Q ss_pred CeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCC-------ChHHhHHHHHHHHHHcC--C--
Q 003167 4 DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP-------NDLYLMSAIAEMVSYFG--W-- 72 (843)
Q Consensus 4 ~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p-------~d~~~~~ai~~ll~~~~--w-- 72 (843)
-+.-++||...+...+++.++.+.++=++....+... ..--||+|+.- +....-+++..+.+.++ |
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~---~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l 99 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDN---LSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRI 99 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEET---TTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecC---CCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeee
Confidence 3778999999999999999999998887764433211 12236667632 12234445555555554 2
Q ss_pred ------cEEEEEEecCCCCcchHHHHHHHHHhc--CcEEEEee
Q 003167 73 ------GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKS 107 (843)
Q Consensus 73 ------~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~ 107 (843)
++++++.+.. | ..++++.++.+.. +.+|+...
T Consensus 100 ~~~~~~~ri~vl~Sg~--g-~nl~~ll~~~~~g~l~~~I~~Vi 139 (302)
T 3o1l_A 100 TDSAQKKRVVLMASRE--S-HCLADLLHRWHSDELDCDIACVI 139 (302)
T ss_dssp EETTSCCEEEEEECSC--C-HHHHHHHHHHHTTCSCSEEEEEE
T ss_pred cccCCCcEEEEEEeCC--c-hhHHHHHHHHHCCCCCcEEEEEE
Confidence 4788888654 3 2456666665543 34565543
No 375
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.66 E-value=1.2e+02 Score=28.42 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCcEEEEEEecC--CCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc
Q 003167 62 AIAEMVSYFGWGEVIAIFNDD--DQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG 139 (843)
Q Consensus 62 ai~~ll~~~~w~~v~ii~~d~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~ 139 (843)
.+.+++...+-++|++|-.-. +-.....+.+.+++++.|.++....... .+..++.. .|+ ++|+|++.+
T Consensus 17 ~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~---~l~--~ad~I~l~G 87 (206)
T 3l4e_A 17 LFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITT---KLR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHH---HHH--HSSEEEECC
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHH---HHH--hCCEEEECC
Confidence 344454444558898885311 1123467889999999998765432111 12344433 443 368888866
Q ss_pred ChhhHHHHHHHHHHcCCcc-------cceEEEEeCc
Q 003167 140 YSRTGLMVFDVAQRLGMMD-------SGYVWIATTW 168 (843)
Q Consensus 140 ~~~~~~~i~~~a~~~g~~~-------~~~~~i~~~~ 168 (843)
. ....+++.+++.|+.. .|.+++++..
T Consensus 88 G--~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 88 G--NTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp S--CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred C--CHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 2 2224555555544321 3456777663
No 376
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=29.02 E-value=1.5e+02 Score=25.02 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=38.8
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHH
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQR 153 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~ 153 (843)
.....+.+.+++.|..+.. . .+....+..+++..+|+|++... ..++..++++.++
T Consensus 17 ~~~~~l~~~l~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDM---V--------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEE---E--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3567778888888877542 1 12345566777788999999754 3457778888876
No 377
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=28.86 E-value=2.1e+02 Score=27.87 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
..+++.....|-..+.++. ++.|..+..+.+...-+..++.|.....+ .+ . + ++...+..++|.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kdfI-~d----~--~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFV-VD----P--F--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCC-CS----H--H--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECCcC-CC----H--H--HHHHHHHcCCCEEEECcc
Confidence 4566667778999998876 55566666777777777777776643322 22 1 1 456688899999998654
Q ss_pred h--hhHHHHHHHHHHcCCc
Q 003167 141 S--RTGLMVFDVAQRLGMM 157 (843)
Q Consensus 141 ~--~~~~~i~~~a~~~g~~ 157 (843)
. .+...++..++++||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 5677788888888864
No 378
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=28.78 E-value=64 Score=30.92 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEE
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKIS 104 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~ 104 (843)
++.++.+...+-++|+++...... ....+++.+++.|.++.
T Consensus 105 ~~~~~~a~~~~~~rigvlaT~~T~---~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 105 EETAKKVKELGFKKAGLLATTGTI---VSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHH---HHTHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEecHHHh---hhhHHHHHHHHCCCeEE
Confidence 444444444477899999754211 12356777788887754
No 379
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=28.55 E-value=24 Score=33.49 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=27.7
Q ss_pred eEEEEcCCChHHHHHHHHhcccCCCcEEecc
Q 003167 5 TLAIVGPQSAVMAHVLSHLANELQVPLLSFT 35 (843)
Q Consensus 5 V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~ 35 (843)
+..++||..|+=......+++++++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 5679999999999998999999999999853
No 380
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=28.51 E-value=3.9e+02 Score=25.94 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=57.7
Q ss_pred CcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeee-cCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh----hhHHH
Q 003167 72 WGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSA-LPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLM 146 (843)
Q Consensus 72 w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~ 146 (843)
-.+|.+.....+...-+...+...|+..|.+|.+--. .| . ..++..++..++++|.+.+.. .....
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp------~---e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~ 193 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP------A---EEVLAAVQKEKPIMLTGTALMTTTMYAFKE 193 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC------S---HHHHHHHHHHCCSEEEEECCCTTTTTHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC------H---HHHHHHHHHcCCCEEEEEeeccCCHHHHHH
Confidence 3467777777777777888888999999999875432 22 2 345566777789999987642 34566
Q ss_pred HHHHHHHcCCcccceEEEEe
Q 003167 147 VFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 147 i~~~a~~~g~~~~~~~~i~~ 166 (843)
+++++++.|.. -.+++++
T Consensus 194 ~i~~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 194 VNDMLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHHHHTTTCC--CCEEEES
T ss_pred HHHHHHhcCCC--CcEEEEC
Confidence 78888887753 2355554
No 381
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=28.44 E-value=69 Score=21.74 Aligned_cols=6 Identities=17% Similarity=0.069 Sum_probs=2.2
Q ss_pred HHHhhh
Q 003167 758 LRQFKK 763 (843)
Q Consensus 758 ~~~~~~ 763 (843)
++.++|
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333333
No 382
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.36 E-value=2.4e+02 Score=22.98 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHHc
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRL 154 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~~ 154 (843)
...+.+.+.+++.|..|... .+....+..+++..+|+|++... ..++..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV-----------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-----------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE-----------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35677888888888765421 12345566777788999999764 45677888888886
No 383
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=28.15 E-value=1.1e+02 Score=30.67 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=23.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 33 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is 33 (843)
.++.+|+=+-++..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 83 YPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred CCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 4677888777666656777777778899886
No 384
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=27.89 E-value=2.4e+02 Score=29.52 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=60.6
Q ss_pred HHHcCCcEEEEEEecCCCCcchHHHHHHHHHhc------CcEEEEeeecCCCC-CCChhHHHHHHHHHhcCC--C---eE
Q 003167 67 VSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEI------RCKISYKSALPPDQ-SVTETDVRNELVKVRMME--A---RV 134 (843)
Q Consensus 67 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~~~-~~~~~d~~~~l~~i~~~~--~---~v 134 (843)
++.++.+++.+|+....... ..+.+.+.+++. |+++.. ..++.+. ..+...+......+++.+ + |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678899999986543322 566777777776 776642 3344420 123567777888888888 7 99
Q ss_pred EEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeC
Q 003167 135 IVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 135 iv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~ 167 (843)
||..+.+ -|+..++......|+ .++-|.|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8877654 466666655444453 45666664
No 385
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.86 E-value=2.8e+02 Score=28.23 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCCc----chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 003167 72 WGEVIAIFNDDDQGR----NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 147 (843)
Q Consensus 72 w~~v~ii~~d~~~g~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i 147 (843)
.+++.+|+.-. -|. ...+.+.+.|++.|+.+....+-. ..+......++...++|+||+++.......+
T Consensus 24 m~~i~vI~NP~-sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIYNPT-SGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEECTT-STTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEECCC-CCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 47888888532 232 346778888999998776543322 2244455666666788999998888877777
Q ss_pred HHHHHH
Q 003167 148 FDVAQR 153 (843)
Q Consensus 148 ~~~a~~ 153 (843)
+..+.+
T Consensus 97 ~~~l~~ 102 (337)
T 2qv7_A 97 VNGIAE 102 (337)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 777743
No 386
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=27.72 E-value=1.3e+02 Score=32.29 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
..+|...+.. -.-+.+++ |..|..+..+.+.+.-+..++.|..+..+ .. .+ ++.+++..++|+|++.+.
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-~d------~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-ID------PY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-CS------HH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-CC------HH--HHHHHHHcCCCEEEEEcc
Confidence 4455444444 56666666 66677777777877767778877654422 22 23 567789999999999875
Q ss_pred h---hhHHHHHHHHHHcCCc
Q 003167 141 S---RTGLMVFDVAQRLGMM 157 (843)
Q Consensus 141 ~---~~~~~i~~~a~~~g~~ 157 (843)
. .+...+++.++++||.
T Consensus 140 ~l~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 3 4677899999999984
No 387
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=27.45 E-value=1.5e+02 Score=30.26 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=55.8
Q ss_pred CeEEEE--eCchHHHHHHHhh------CCCCcceEeCCCHHHHHHHHhcCCcEEEEcCh---------hhHHHHHhcCCC
Q 003167 603 DRVGYQ--VGSFAENYLIEEL------SIPKSRLVALGSPEEYAIALENRTVAAVVDER---------PYIDLFLSDHCQ 665 (843)
Q Consensus 603 ~~i~~~--~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~---------~~~~~~~~~~~~ 665 (843)
.+|+++ .|++.+.-..+.+ +.+...++++.+.++++++|.+|+ |..+... ..++.+ .+..+
T Consensus 7 ~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL-~~~~~ 84 (329)
T 3luy_A 7 RKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDAL-IDAKD 84 (329)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHH-HTCSS
T ss_pred cEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHh-hccCC
Confidence 468886 6887766554422 113456889999999999999999 6555431 123333 34457
Q ss_pred eEEeCCccccCcceeeecCCCC
Q 003167 666 FSVRGQEFTKSGWGFAFPRDSP 687 (843)
Q Consensus 666 l~~~~~~~~~~~~~~~~~k~sp 687 (843)
+.++++.+.+...++...++..
T Consensus 85 l~I~gE~~l~I~h~Ll~~~g~~ 106 (329)
T 3luy_A 85 LVGFARVGVNVEFDAYVAQGAD 106 (329)
T ss_dssp CEEEEEEEEECCCEEEEETTCC
T ss_pred cEEEEEEEEEeeeeeecCCCCC
Confidence 8999998877777777666643
No 388
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=27.42 E-value=95 Score=32.45 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=58.8
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCC---cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGW---GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNE 123 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w---~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~ 123 (843)
|.-+...+... ..+.++++.++. +++.+|+...-... .+.+.+++.|+.+.....+.++ .+...+...
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~ 98 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDE--PTTVQVDEL 98 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSC--CBHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHH
Confidence 43344444433 235667777763 77878885443322 3667777777776544445554 556778888
Q ss_pred HHHHhcCC---CeEEEEEcChh--hHHHHHHH
Q 003167 124 LVKVRMME---ARVIVVHGYSR--TGLMVFDV 150 (843)
Q Consensus 124 l~~i~~~~---~~viv~~~~~~--~~~~i~~~ 150 (843)
+..+++.+ +|+||-.+.+. |+.+++..
T Consensus 99 ~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 99 TAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSL 130 (375)
T ss_dssp HHHHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 88888776 99999877653 45555543
No 389
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=27.05 E-value=1.5e+02 Score=26.30 Aligned_cols=75 Identities=7% Similarity=-0.016 Sum_probs=44.9
Q ss_pred cEEEEEEecCCCC--cchHHHHHHHHHhcCcEEEEeeecCCCCCCChh-HHHHHHHHHhcCCCeEEEEEcCh--hhH--H
Q 003167 73 GEVIAIFNDDDQG--RNGVTALGDKLAEIRCKISYKSALPPDQSVTET-DVRNELVKVRMMEARVIVVHGYS--RTG--L 145 (843)
Q Consensus 73 ~~v~ii~~d~~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~-d~~~~l~~i~~~~~~viv~~~~~--~~~--~ 145 (843)
+++.|+|. +.+| +..++.+.+.+.+.|+.+... ... .. +...++..+. +.|.||+.+.. ... .
T Consensus 5 ~kv~IvY~-S~~GnT~~iA~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~ 74 (159)
T 3fni_A 5 TSIGVFYV-SEYGYSDRLAQAIINGITKTGVGVDVV---DLG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQ 74 (159)
T ss_dssp CEEEEEEC-TTSTTHHHHHHHHHHHHHHTTCEEEEE---ESS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHH
T ss_pred CEEEEEEE-CCChHHHHHHHHHHHHHHHCCCeEEEE---ECc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHH
Confidence 57889984 4455 567888999999889876532 222 22 4445555554 46788776543 221 3
Q ss_pred HHHHHHHHcCCc
Q 003167 146 MVFDVAQRLGMM 157 (843)
Q Consensus 146 ~i~~~a~~~g~~ 157 (843)
.++.........
T Consensus 75 ~~l~~l~~~~~~ 86 (159)
T 3fni_A 75 GALSTILGSVNE 86 (159)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHhhccc
Confidence 456555554443
No 390
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.97 E-value=2.8e+02 Score=23.17 Aligned_cols=56 Identities=7% Similarity=0.019 Sum_probs=39.9
Q ss_pred chHHHHHHHHHh-cCcEEEEeeecCCCCCCChhHHHHHHHHHhc-CCCeEEEEEcC---hhhHHHHHHHHHH
Q 003167 87 NGVTALGDKLAE-IRCKISYKSALPPDQSVTETDVRNELVKVRM-MEARVIVVHGY---SRTGLMVFDVAQR 153 (843)
Q Consensus 87 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~-~~~~viv~~~~---~~~~~~i~~~a~~ 153 (843)
.....+.+.+++ .|.+|.. . .+....+..+++ ..+|+|++... ..++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~---~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIE---V--------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEE---E--------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEE---E--------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 356777888888 7877652 1 123456777788 88999999765 4467778888887
No 391
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=26.72 E-value=3.5e+02 Score=26.43 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=59.2
Q ss_pred HHHHHHHH-HcC-CcEEEEEEecCCCCcchHHHHHHH--------HHhc-CcEEEEeeecCCCCCCChhHHHHHHHHHhc
Q 003167 61 SAIAEMVS-YFG-WGEVIAIFNDDDQGRNGVTALGDK--------LAEI-RCKISYKSALPPDQSVTETDVRNELVKVRM 129 (843)
Q Consensus 61 ~ai~~ll~-~~~-w~~v~ii~~d~~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~ 129 (843)
+.+...++ +.+ -.+|.+-....|...-+...+... |+.. |.+|.+--. ......++..+++
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--------~vp~e~iv~aa~e 178 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--------QVANEDFIKKAVE 178 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--------SBCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--------CCCHHHHHHHHHH
Confidence 33444443 333 235544444666666666666666 8899 999875321 1224566778888
Q ss_pred CCCeEEEEEcChh-------hHHHHHHHHHHcCCcccceEEEEe
Q 003167 130 MEARVIVVHGYSR-------TGLMVFDVAQRLGMMDSGYVWIAT 166 (843)
Q Consensus 130 ~~~~viv~~~~~~-------~~~~i~~~a~~~g~~~~~~~~i~~ 166 (843)
.++|+|.+.+... ....+++++++.|+...-.+++++
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG 222 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGG 222 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEEC
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 8999999977433 344567778887764333345544
No 392
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=26.65 E-value=2.1e+02 Score=23.88 Aligned_cols=54 Identities=4% Similarity=-0.055 Sum_probs=33.3
Q ss_pred hHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHHHc
Q 003167 88 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQRL 154 (843)
Q Consensus 88 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~~~ 154 (843)
..+.+.+.++..|..+.. . .+....+..+....+|+|+ ....++..+++++++.
T Consensus 30 ~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 30 LGGEIEKGLNVKGFMADV---T--------ESLEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcEEEE---e--------CCHHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 566677777777776542 1 1223445556667788888 4445566777777764
No 393
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.48 E-value=78 Score=31.52 Aligned_cols=65 Identities=9% Similarity=-0.014 Sum_probs=46.0
Q ss_pred cEEEEEE-ecCCCCcchHHHHHHHHHhcCc---EEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 73 GEVIAIF-NDDDQGRNGVTALGDKLAEIRC---KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~-~d~~~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
++|+++- .++.|.....+.+.+.+.+.|. ++..... ... .+.......++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~--~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSE--GDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECT--TCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCC--CCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5688872 2466778889999999999998 6443211 122 23555677888999999999998764
No 394
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=25.75 E-value=51 Score=32.81 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=47.8
Q ss_pred CeeEEEecCcccccccEEeecCcceEEeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEece
Q 003167 375 RQLRIGVPNRVSYRDFVFKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDI 454 (843)
Q Consensus 375 ~~lrv~v~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~ 454 (843)
++|+||+.. .+. ..+...++..+.+..+ .+.++... +..+..+.+|++|+++...
T Consensus 93 g~l~I~~~~--~~~------------~~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~~ 147 (306)
T 3hhg_A 93 GVLSVDSAM--PMV------------LHLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRAG 147 (306)
T ss_dssp EEEEEEBCH--HHH------------HHTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEESC
T ss_pred CcEEEEccH--HHH------------HHHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEeC
Confidence 568888863 111 1345677888888775 35555542 1234568899999998743
Q ss_pred eeecCcceeeeecccccccceEEEEeccC
Q 003167 455 AIVTNRTKAVDFTQPYIESGLVVVAPVRK 483 (843)
Q Consensus 455 ~i~~~r~~~vdfs~p~~~~~~~~~v~~~~ 483 (843)
.... ..+ -..|+....+++++++..
T Consensus 148 ~~~~---~~l-~~~~L~~~~~~~v~~~~~ 172 (306)
T 3hhg_A 148 ELDD---SGL-RARHLFDSRFRVIASPEY 172 (306)
T ss_dssp CCCC---SSC-EEEEEEEEEEEEEECHHH
T ss_pred CCCC---CCe-EEEEeeeeEEEEEECHHH
Confidence 2221 122 245667777787776543
No 395
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=25.72 E-value=1.2e+02 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=46.0
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
+.|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME---SQ--FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE---CT--TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEe---CC--CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 46888876 456777888999999999999876542 12 22444556778888889999888764
No 396
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=25.69 E-value=3e+02 Score=23.10 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHHc
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRL 154 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~~ 154 (843)
.....+.+.+++.|....... ..+....+..+....+|+|++.... .++..++++.++.
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~---------~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF---------VDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKP 76 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE---------ESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCCeeEEE---------ECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 356778888888887532211 1233456777788889999997653 4577788888774
No 397
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=25.48 E-value=44 Score=34.87 Aligned_cols=95 Identities=14% Similarity=0.066 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 61 SAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 61 ~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
+.+.++++.+|.+++.+|+....++ ..+.+.+.|+ ..+.+. .+.++ .+...+...++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3467788889999999988654321 2333333333 122332 22333 44677888888899999999998776
Q ss_pred hh--hHHHHHHHHHHcCCcccceEEEEeCc
Q 003167 141 SR--TGLMVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 141 ~~--~~~~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
+. |+.+++.. ..+ ..++-|.|..
T Consensus 98 Gs~iD~aK~iA~--~~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAM--TTA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHH--HHC---CCEEEEECSS
T ss_pred cHHHHHHHHHHh--ccC---CCEEEEcCCc
Confidence 53 45555433 223 3445565544
No 398
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=25.41 E-value=56 Score=33.49 Aligned_cols=88 Identities=7% Similarity=0.027 Sum_probs=56.7
Q ss_pred CCCCChHHhhhCCCeEEEEeCchHHHHHHHhhCCCCcceEeCCCHHHHHHHHhcCCcEEEEcChhhHHHH-HhcCCCeEE
Q 003167 590 SPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLF-LSDHCQFSV 668 (843)
Q Consensus 590 ~~i~s~~dL~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~~~~~~~~-~~~~~~l~~ 668 (843)
.+|++++||. |.+|.+..+......+ +.+|-. -++. ...|...+|++|.+|+.......+... ..+-+++..
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~-~alGa~---pv~m-~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~ 216 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESY-KAFGAT---PTPL-PWGEVYGGLQTNVIQGQENPTFFLYSTKIYEVTDYIT 216 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHH-HHHTSE---EEEC-CGGGHHHHHHTTSCCEEEEEHHHHHHTTGGGSCSEEE
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHH-HHcCCe---eeec-CHHHHHHHHHcCCcceEecCHHHHHhccHhhhcceeE
Confidence 6899999995 9999987766666666 567654 2333 567899999999999998665443221 122345544
Q ss_pred eCCccccCcceeeecCC
Q 003167 669 RGQEFTKSGWGFAFPRD 685 (843)
Q Consensus 669 ~~~~~~~~~~~~~~~k~ 685 (843)
..... .....+.+.+.
T Consensus 217 ~~~~~-~~~~~~~~n~~ 232 (326)
T 3fxb_A 217 YAGHN-NFTTAVMANKD 232 (326)
T ss_dssp ECCCC-EEEEEEEEEHH
T ss_pred EcCcc-ccceEEEEeHH
Confidence 43322 23445666665
No 399
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.39 E-value=1e+02 Score=30.27 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=46.9
Q ss_pred CcEEEEEEec-CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 72 WGEVIAIFND-DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 72 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
-++|+++..+ +.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SE--ENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CT--TCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 3578888874 56677888899999999999877532 12 224445567788888899999887643
No 400
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=25.16 E-value=1.8e+02 Score=28.31 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEe
Q 003167 406 DVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVG 452 (843)
Q Consensus 406 dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~ 452 (843)
+.++..+++.|++ ++.+.| ..|...-.+|.+|++|+...
T Consensus 27 ~~v~~~~~k~Gi~--veiv~F------~Dy~~pN~AL~~G~iDaN~f 65 (252)
T 4ib2_A 27 EQAKSILKKEGYQ--LEVTVF------DDYVQPNEVVESGEFDANYF 65 (252)
T ss_dssp HHHHHHHHHTTCE--EEEEEC------SSSSHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHhcCCe--EEEEEe------cChhhHHHHHHcCCcCeeec
Confidence 3456667778965 555666 34788899999999998653
No 401
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.63 E-value=1.4e+02 Score=20.22 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 003167 744 IACFLALLAYFCLMLRQFKKY 764 (843)
Q Consensus 744 ~g~~lal~vf~~e~~~~~~~~ 764 (843)
+|.++.+++.+.-.+|.|||+
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 333333333344444444443
No 402
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=24.61 E-value=4.4e+02 Score=26.09 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=61.8
Q ss_pred CeEEEEcCCChHHHHHHHHhcccCCCcEEecccCCCCCCCCCCCceEEcCC------ChHHhHHHHHHHHHHcC--C---
Q 003167 4 DTLAIVGPQSAVMAHVLSHLANELQVPLLSFTALDPTLSPLQYPFFVQTAP------NDLYLMSAIAEMVSYFG--W--- 72 (843)
Q Consensus 4 ~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~at~~~ls~~~~p~~fR~~p------~d~~~~~ai~~ll~~~~--w--- 72 (843)
-+.-|+||...+...+++.++.+.++=++....+.... .--||+|+.- +....-+++..+.+.++ |
T Consensus 9 ~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~---~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~~l~m~~~l~ 85 (286)
T 3n0v_A 9 WILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQ---SGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFGMAFELT 85 (286)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETT---TTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGTCEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCC---CCeeEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEee
Confidence 37889999999999999999999998887654432111 2235666632 12334445556666654 2
Q ss_pred -----cEEEEEEecCCCCcchHHHHHHHHHhc--CcEEEEee
Q 003167 73 -----GEVIAIFNDDDQGRNGVTALGDKLAEI--RCKISYKS 107 (843)
Q Consensus 73 -----~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~ 107 (843)
++++++.+.. | ..++++.++.+.. +.+|+...
T Consensus 86 ~~~~~~ri~vl~Sg~--g-~~l~~ll~~~~~g~l~~~i~~Vi 124 (286)
T 3n0v_A 86 APNHRPKVVIMVSKA--D-HCLNDLLYRQRIGQLGMDVVAVV 124 (286)
T ss_dssp CTTCCCEEEEEESSC--C-HHHHHHHHHHHTTSSCCEEEEEE
T ss_pred cCCCCcEEEEEEeCC--C-CCHHHHHHHHHCCCCCcEEEEEE
Confidence 4788888654 3 3566666666543 34555543
No 403
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=24.56 E-value=4.9e+02 Score=26.26 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=21.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEecc
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLSFT 35 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~ 35 (843)
|+-...=-+.+...-..++..+.+.+++.|..+
T Consensus 16 DG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g 48 (325)
T 3eeg_A 16 DGEQVPGCQLNTEEKIIVAKALDELGVDVIEAG 48 (325)
T ss_dssp CC-------CCTTHHHHHHHHHHHHTCSEEEEE
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 333333235667788889999999999999865
No 404
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=24.53 E-value=1e+02 Score=30.16 Aligned_cols=70 Identities=7% Similarity=-0.030 Sum_probs=46.7
Q ss_pred eHHHHHHHHHHC-CCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCc---ceeeeecccccccceEEEE
Q 003167 404 CIDVFLAAVRLL-PYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNR---TKAVDFTQPYIESGLVVVA 479 (843)
Q Consensus 404 ~~dl~~~i~~~l-~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r---~~~vdfs~p~~~~~~~~~v 479 (843)
.-++++.+.++. +.+ +.+.. ++-...+.+|.+|++|+++.+..+..+. ...+ ...|+..+.+++++
T Consensus 18 l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv 87 (264)
T 4ecf_A 18 VEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIV 87 (264)
T ss_dssp HHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEE
Confidence 356677777766 433 44333 3467889999999999998755443320 1112 36789999999999
Q ss_pred eccC
Q 003167 480 PVRK 483 (843)
Q Consensus 480 ~~~~ 483 (843)
+...
T Consensus 88 ~~~~ 91 (264)
T 4ecf_A 88 NKKV 91 (264)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 8765
No 405
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.45 E-value=1.4e+02 Score=30.23 Aligned_cols=66 Identities=6% Similarity=-0.109 Sum_probs=48.1
Q ss_pred CCcEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 71 GWGEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 71 ~w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
.-+.|+++.. ++.|.....+.+.+++++.|..+.... .. .+.......++.+.+.++|.||+....
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AW--NNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CT--TCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CC--CCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 4468999986 356777889999999999999877532 12 224455566788888899999987543
No 406
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=24.41 E-value=3.3e+02 Score=23.25 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~~g 155 (843)
.....+.+.+++.|..|.. . .+....+..+++..+|+|++... ..++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEH---V--------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---E--------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEE---e--------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 4577788888888876542 1 12345677778889999999765 346777888888754
No 407
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=23.92 E-value=1.6e+02 Score=30.31 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=58.4
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCC-CCCChhHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPD-QSVTETDVRNELV 125 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~d~~~~l~ 125 (843)
||-+...+.... .+.++++.+ +++.+|+....+.. ..+.+.+.+ +.| .+... .++.. ...+...+...+.
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g-~~~~~-~~~~~e~~p~~~~v~~~~~ 81 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYE-NVHKV-IIPAGEKTKTFEQYQETLE 81 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC--------CEEEE-EECSGGGGCSHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcC-CeEEE-EECCCCCCCCHHHHHHHHH
Confidence 455555544332 244555555 88999886543322 566677777 667 33321 22221 0134677788888
Q ss_pred HHhcCCC---eEEEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeCc
Q 003167 126 KVRMMEA---RVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATTW 168 (843)
Q Consensus 126 ~i~~~~~---~viv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~~ 168 (843)
.+++.++ |+||..+.+ -|+..++......| -+++-|.|..
T Consensus 82 ~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 82 YILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp HHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred HHHHcCCCCCceEEEECChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 8888888 888876654 45666655443333 3455565553
No 408
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=23.80 E-value=2.8e+02 Score=27.68 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCcEEEEEEecC-CCCc--chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHH
Q 003167 71 GWGEVIAIFNDD-DQGR--NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMV 147 (843)
Q Consensus 71 ~w~~v~ii~~d~-~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i 147 (843)
..+++.+|+.-. .-|+ ...+.+.+.+++.|+.+....+-. ..+.....+++. .+.|.|++.+.......+
T Consensus 7 ~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~------~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v 79 (304)
T 3s40_A 7 KFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE------QGDATKYCQEFA-SKVDLIIVFGGDGTVFEC 79 (304)
T ss_dssp SCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS------TTHHHHHHHHHT-TTCSEEEEEECHHHHHHH
T ss_pred CCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccC------cchHHHHHHHhh-cCCCEEEEEccchHHHHH
Confidence 456788887432 2222 456778888888998876544322 345556666665 488999988888777777
Q ss_pred HHHHHH
Q 003167 148 FDVAQR 153 (843)
Q Consensus 148 ~~~a~~ 153 (843)
+..+..
T Consensus 80 ~~~l~~ 85 (304)
T 3s40_A 80 TNGLAP 85 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777654
No 409
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=23.80 E-value=2e+02 Score=28.97 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=47.9
Q ss_pred EEEEEEecCC----CCcchHHHHHHHHHh-------cCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChh
Q 003167 74 EVIAIFNDDD----QGRNGVTALGDKLAE-------IRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSR 142 (843)
Q Consensus 74 ~v~ii~~d~~----~g~~~~~~l~~~l~~-------~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~ 142 (843)
+|+++..... +|......++.++++ .|.++..... ... .+...-...++++.+.++++||......
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~-d~~--~~~~~~~~~~~~l~~~~v~~iig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEY-DDA--CDPKQAVAVANKIVNDGIKYVIGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEE-ECT--TCHHHHHHHHHHHHHTTCCEEECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCC--CCHHHHHHHHHHHHhCCCCEEEcCCCcH
Confidence 6788887532 466677777777776 4554433221 112 2244445566777777899887655555
Q ss_pred hHHHHHHHHHHcCC
Q 003167 143 TGLMVFDVAQRLGM 156 (843)
Q Consensus 143 ~~~~i~~~a~~~g~ 156 (843)
....+...+.+.++
T Consensus 81 ~~~~~~~~~~~~~i 94 (346)
T 1usg_A 81 STQPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC
Confidence 55556666666553
No 410
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.61 E-value=3.2e+02 Score=22.76 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEc-ChhhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHG-YSRTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~-~~~~~~~i~~~a~~~g 155 (843)
.....+.+.+++.|.++.. . .+....+..++...+|+|++.. ...++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIW---A--------KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEE---E--------SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEE---E--------CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 4567788888888887652 1 1234566777778899999986 2235566777777653
No 411
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=23.58 E-value=3.9e+02 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCC--CeEEEEEcC------hhhHHHHHHHHHHcC
Q 003167 117 ETDVRNELVKVRMME--ARVIVVHGY------SRTGLMVFDVAQRLG 155 (843)
Q Consensus 117 ~~d~~~~l~~i~~~~--~~viv~~~~------~~~~~~i~~~a~~~g 155 (843)
-..+..+|..+++.+ .|+|++.-- ..+...++..+.+.|
T Consensus 59 Rp~l~~ll~~~~~g~~~~d~lvv~~ldRl~R~~~~~~~~~~~l~~~g 105 (167)
T 3guv_A 59 RIQFNRMMEDIKSGKDGVSFVLVFKLSRFARNAADVLSTLQIMQDYG 105 (167)
T ss_dssp CHHHHHHHHHHHTCTTCCSEEEESCGGGTCSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCCCccEEEEEeCchhcCCHHHHHHHHHHHHHCC
Confidence 345666666666554 566666432 234444555555555
No 412
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.36 E-value=85 Score=26.72 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=43.5
Q ss_pred EEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHH
Q 003167 76 IAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQR 153 (843)
Q Consensus 76 ~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~ 153 (843)
.+|.+|+.. ....+.+.+++.|.+|+.. ..+-...+..+++..+|+|++... ..++..++++.++
T Consensus 11 ILiVdD~~~---~~~~l~~~L~~~G~~v~~~----------a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~ 77 (123)
T 2lpm_A 11 VLVVEDESM---IAMLIEDTLCELGHEVAAT----------ASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAE 77 (123)
T ss_dssp EEEESSSTT---TSHHHHHHHHHHCCCCCBC----------SCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHH
T ss_pred EEEEeCCHH---HHHHHHHHHHHCCCEEEEE----------ECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 344555543 4556677778888765421 123345677788889999999754 4456778888877
Q ss_pred cC
Q 003167 154 LG 155 (843)
Q Consensus 154 ~g 155 (843)
.+
T Consensus 78 ~~ 79 (123)
T 2lpm_A 78 RN 79 (123)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=23.25 E-value=47 Score=33.82 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCCCeEEEEcCCChHHHHHHHHhcccCCCcEEecc
Q 003167 1 METDTLAIVGPQSAVMAHVLSHLANELQVPLLSFT 35 (843)
Q Consensus 1 ~~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is~~ 35 (843)
|+.++++|.||..|+=+..+..++...+.++||..
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 56679999999999988888889999998888743
No 414
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.21 E-value=2.4e+02 Score=22.29 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~~g 155 (843)
...+.+.+.++..|..+... . +....+..++...+|++++.... .++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~---~--------~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL---V--------DGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S--------CHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe---c--------CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 35677788888888776531 1 12334555566679999987653 35667888887754
No 415
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=22.83 E-value=2.4e+02 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCChHHHHHHHHhcccCC
Q 003167 2 ETDTLAIVGPQSAVMAHVLSHLANELQ 28 (843)
Q Consensus 2 ~~~V~aiiGp~~S~~~~av~~~~~~~~ 28 (843)
+.++++|+||.+++=+.-+..++..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999988777777776654
No 416
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=22.79 E-value=2.6e+02 Score=22.94 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=42.7
Q ss_pred cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHH
Q 003167 73 GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDV 150 (843)
Q Consensus 73 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~ 150 (843)
.+|.++- |+. .....+.+.+++.|..+.. . .+....+..+++..+|+|++.... .++..++++
T Consensus 8 ~~ilivd-d~~---~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 72 (130)
T 3eod_A 8 KQILIVE-DEQ---VFRSLLDSWFSSLGATTVL---A--------ADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEH 72 (130)
T ss_dssp CEEEEEC-SCH---HHHHHHHHHHHHTTCEEEE---E--------SCHHHHHHHHTTCCCSEEEECCC-----CHHHHHH
T ss_pred CeEEEEe-CCH---HHHHHHHHHHHhCCceEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence 4555443 332 3567778888888877653 1 123456677778889999997653 346677888
Q ss_pred HHHcC
Q 003167 151 AQRLG 155 (843)
Q Consensus 151 a~~~g 155 (843)
.++.+
T Consensus 73 l~~~~ 77 (130)
T 3eod_A 73 IRNRG 77 (130)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 87754
No 417
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=22.55 E-value=75 Score=32.38 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=48.0
Q ss_pred cCCcEEEEEEec--CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 70 FGWGEVIAIFND--DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 70 ~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
-.-+.|+++..+ +.|.......+.+++++.|..+.... .. . .......++.+.+.++|.||+...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~-~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAE---AN--S-VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE---CC--S-HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEC---CC--C-hHHHHHHHHHHHhCCCCEEEEcch
Confidence 345679999874 56778889999999999999877543 22 2 444566778888889999998776
No 418
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=21.91 E-value=1.7e+02 Score=29.40 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=48.7
Q ss_pred CeEEEEeCchHH------HHHHHhh-CCCCcceEeCCCHHHHHHHHhcCCcEEEEcC-hhhHHHHHhcCCCeEEeCCcc-
Q 003167 603 DRVGYQVGSFAE------NYLIEEL-SIPKSRLVALGSPEEYAIALENRTVAAVVDE-RPYIDLFLSDHCQFSVRGQEF- 673 (843)
Q Consensus 603 ~~i~~~~~~~~~------~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~- 673 (843)
.+||+..+.... .++.+.+ +. +-.++.+.+..+.+++|.+|++|+.+.. .+++.. ..+..++..+....
T Consensus 31 lrig~~~~~~p~~~a~~~g~~~~~~~g~-~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-~~~g~~~~~v~~~~~ 108 (324)
T 3ksx_A 31 LRIGYQKAVSSLVLAKQHRLLEQRFPRT-KITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFA-QAAGADLLYVGWVPP 108 (324)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHCTTS-EEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHH-HHTTCCEEEEEEECC
T ss_pred EEEEecCCchhHHHHHhhCHHHHhcCCC-ceEEEECCCHHHHHHHHHCCCCCEEeecCHHHHHH-HhcCCCEEEEEEecC
Confidence 368887665321 1232222 33 2455667788899999999999987543 333332 23344555554332
Q ss_pred ccCcceeeecCCCCc
Q 003167 674 TKSGWGFAFPRDSPL 688 (843)
Q Consensus 674 ~~~~~~~~~~k~spl 688 (843)
...+.++++++++++
T Consensus 109 ~~~~~~lvv~~~s~I 123 (324)
T 3ksx_A 109 TPKAETILVPSKSAL 123 (324)
T ss_dssp CGGGEEEEEETTCSC
T ss_pred CCCceEEEEeCCCCC
Confidence 223567777777764
No 419
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=21.86 E-value=3.4e+02 Score=22.45 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh----hhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS----RTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~----~~~~~i~~~a~~~g 155 (843)
.....+.+.+++.|..+... .+....+..+++..+|+|++.... .++..+++++++.+
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~ 78 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF-----------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRG 78 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE-----------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCC
Confidence 35677888888888776521 123445666777889999998653 45677888888865
No 420
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.78 E-value=3.5e+02 Score=22.49 Aligned_cols=56 Identities=7% Similarity=-0.070 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHHc
Q 003167 88 GVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRL 154 (843)
Q Consensus 88 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~~ 154 (843)
....+...++..|..+.. .. +....+..+....+|+|++.... .++..++++.++.
T Consensus 15 ~~~~l~~~L~~~g~~v~~---~~--------~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 15 IVDVFVTMLERGGYRPIT---AF--------SGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp HHHHHHHHHHHTTCEEEE---ES--------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCceEEE---eC--------CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 566777788878876552 11 12344556666789999997653 3567788888774
No 421
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=21.70 E-value=3.5e+02 Score=22.47 Aligned_cols=56 Identities=9% Similarity=-0.043 Sum_probs=39.0
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHH
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQR 153 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~ 153 (843)
...+.+.+.++..|..|.. . .+....+..+++..+|+|++.... .++..++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---A--------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEE---e--------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4567788888888876542 1 123456667777889999997653 356778888877
No 422
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=21.51 E-value=4.5e+02 Score=26.08 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHHcCCcEEEEEEec--------------CCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCC-hhHHHH
Q 003167 58 YLMSAIAEMVSYFGWGEVIAIFND--------------DDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVT-ETDVRN 122 (843)
Q Consensus 58 ~~~~ai~~ll~~~~w~~v~ii~~d--------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-~~d~~~ 122 (843)
-.+..++..|...|..++.++-.| ++-|+.-++...+.+++.+-.+... .++.. -+ ..++..
T Consensus 46 GlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~-~~~~~--l~~~~~~~~ 122 (292)
T 3h8v_A 46 GVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFE-VHNYN--ITTVENFQH 122 (292)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEE-EECCC--TTSHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEE-Eeccc--CCcHHHHHH
Confidence 356777888888888888876432 3468888999999998865433222 22222 11 244544
Q ss_pred HHHHHhc------CCCeEEEEEcChhhHHHHH-HHHHHcC
Q 003167 123 ELVKVRM------MEARVIVVHGYSRTGLMVF-DVAQRLG 155 (843)
Q Consensus 123 ~l~~i~~------~~~~viv~~~~~~~~~~i~-~~a~~~g 155 (843)
.+..+.. .+.|+||-+.+...++..+ +.+.+.|
T Consensus 123 ~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~ 162 (292)
T 3h8v_A 123 FMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELG 162 (292)
T ss_dssp HHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHT
T ss_pred HhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhC
Confidence 4444321 5789999888777776655 4445544
No 423
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=21.50 E-value=2.6e+02 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCeEEEEcCCChHHHHHHHHhcccCCCcEEe
Q 003167 3 TDTLAIVGPQSAVMAHVLSHLANELQVPLLS 33 (843)
Q Consensus 3 ~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is 33 (843)
.++.+|+=+-+|..+.++..+-+..++|+|.
T Consensus 83 ~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 83 FDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp SCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred CCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 4677777666666555566666677888875
No 424
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=21.36 E-value=57 Score=31.72 Aligned_cols=74 Identities=8% Similarity=-0.091 Sum_probs=50.0
Q ss_pred EeEeHHHHHHHHHHCCCcccEEEEeCCCCCCCCChHHHHHHHHcCcccEEEeceeeecCcc---eeeeecccccccceEE
Q 003167 401 HGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNPTYSELINQITTGVFDAAVGDIAIVTNRT---KAVDFTQPYIESGLVV 477 (843)
Q Consensus 401 ~G~~~dl~~~i~~~l~f~~~~~~~~~~~~~~n~~~~~~i~~l~~g~~Di~~~~~~i~~~r~---~~vdfs~p~~~~~~~~ 477 (843)
.|+.-+|...+.+..|.++.+.+. .-..++.++.+|.+|+.+..-....+.. ....-..+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~---------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV---------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE---------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc---------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 356677888888888866555543 3668899999999999876433222211 0111236788899999
Q ss_pred EEeccC
Q 003167 478 VAPVRK 483 (843)
Q Consensus 478 ~v~~~~ 483 (843)
++|+..
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 425
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.36 E-value=3.1e+02 Score=23.37 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=39.6
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~~~i~~~a~~~g 155 (843)
.....+.+.++..|..+.. . .+....+..++...+|+|++.... .++..++++.++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 18 PILNSLKRLIKRLGCNIIT---F--------TSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSY 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEE---E--------SCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEE---e--------CCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhC
Confidence 4567788888888877652 1 123456677777889999997653 35667788877743
No 426
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=21.25 E-value=37 Score=33.42 Aligned_cols=75 Identities=12% Similarity=-0.032 Sum_probs=39.1
Q ss_pred EEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcChhhHHHHHHHHH
Q 003167 75 VIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYSRTGLMVFDVAQ 152 (843)
Q Consensus 75 v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~~~~~~i~~~a~ 152 (843)
|+++.. ++.|.......+.+++++.|..+.... .. .+.......++.+.+.++|.||+....... ..++.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~ 75 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFP---IL--SLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRL 75 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECC---CC--SCCCCC---------CCCSEEEEESCCCC-------CC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEe---CC--CchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHh
Confidence 567765 466777889999999999998876532 11 112223455677777889999887654332 3444444
Q ss_pred HcC
Q 003167 153 RLG 155 (843)
Q Consensus 153 ~~g 155 (843)
+.|
T Consensus 76 ~~~ 78 (276)
T 2h0a_A 76 PTE 78 (276)
T ss_dssp SCS
T ss_pred hcC
Confidence 434
No 427
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=21.23 E-value=2.8e+02 Score=23.68 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~~g 155 (843)
.....+.+.+++.|..|.. . .+....+..+++..+|+|++... ..++..+++++++..
T Consensus 25 ~~~~~l~~~L~~~g~~v~~---~--------~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 25 VILQRLQQLLSPLPYTLHF---A--------RDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQY 84 (153)
T ss_dssp HHHHHHHHHHTTSSCEEEE---E--------SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccCcEEEE---E--------CCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHC
Confidence 3567788888888876542 1 12344566677788999999765 345677888887744
No 428
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.22 E-value=3.3e+02 Score=22.05 Aligned_cols=58 Identities=14% Similarity=0.039 Sum_probs=39.1
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC--hhhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY--SRTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~--~~~~~~i~~~a~~~g 155 (843)
.....+...+++.|..+.. . .+....+..+++..+|+|++... ..++..++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~---~--------~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIE---A--------ENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E--------SSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEE---e--------CCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 3566777788888877652 1 12344567777788999998754 345777888887643
No 429
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=21.20 E-value=5.1e+02 Score=24.89 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCcEEEEE---------------EecCCCCcchHHHHHHHHHhc--CcEEEEeeecCCCCCCChhHHH
Q 003167 59 LMSAIAEMVSYFGWGEVIAI---------------FNDDDQGRNGVTALGDKLAEI--RCKISYKSALPPDQSVTETDVR 121 (843)
Q Consensus 59 ~~~ai~~ll~~~~w~~v~ii---------------~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~d~~ 121 (843)
.+..+++.|...|..++.++ +..++-|+.-++.+.+.+++. +++|.. ++.. .+..+..
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~---~~~~--~~~~~~~ 113 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA---LQQR--LTGEALK 113 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE---ECSC--CCHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE---Eecc--CCHHHHH
Confidence 35678888888899999987 333455778889999998875 445443 2222 1233333
Q ss_pred HHHHHHhcCCCeEEEEEcChhhHHHHH-HHHHHcC
Q 003167 122 NELVKVRMMEARVIVVHGYSRTGLMVF-DVAQRLG 155 (843)
Q Consensus 122 ~~l~~i~~~~~~viv~~~~~~~~~~i~-~~a~~~g 155 (843)
..+. +.|+||.+.....+...+ +.+.+.+
T Consensus 114 ~~~~-----~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 114 DAVA-----RADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp HHHH-----HCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred HHHh-----cCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 3332 579999887766655544 4444443
No 430
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=21.10 E-value=4.2e+02 Score=27.36 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=65.6
Q ss_pred CCceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCC-CCChhHHHHHH
Q 003167 46 YPFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQ-SVTETDVRNEL 124 (843)
Q Consensus 46 ~p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~d~~~~l 124 (843)
.||-+...+.... .+.++++.. +++.+|+....+. ..+.+.+.|++.|+.+... .++.+. ..+...+...+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 3566666665433 345555543 8999998665443 3678889999999876532 233320 01234566666
Q ss_pred HHHhcC---CCeEEEEEcCh--hhHHHHHHHHHHcCCcccceEEEEeC
Q 003167 125 VKVRMM---EARVIVVHGYS--RTGLMVFDVAQRLGMMDSGYVWIATT 167 (843)
Q Consensus 125 ~~i~~~---~~~viv~~~~~--~~~~~i~~~a~~~g~~~~~~~~i~~~ 167 (843)
..+++. +.|+||..+.+ .|...++......|. .++-|.|.
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 666653 46888887765 355666554444443 44555554
No 431
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.07 E-value=1.3e+02 Score=29.86 Aligned_cols=66 Identities=9% Similarity=-0.086 Sum_probs=45.6
Q ss_pred CcEEEEEEe-cCCCCcchHHHHHHHHHhcCc----EEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcC
Q 003167 72 WGEVIAIFN-DDDQGRNGVTALGDKLAEIRC----KISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGY 140 (843)
Q Consensus 72 w~~v~ii~~-d~~~g~~~~~~l~~~l~~~g~----~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~ 140 (843)
-++|+++.. ++.|.....+.+.+.+.+.|. ++.... .... .+.......++++.+.++|.||+.+.
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~-~~~~--~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDY-KTAQ--GNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEE-EECT--TCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEE-ecCC--CCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 467888742 466777889999999999988 433221 1122 23455667788898899999988764
No 432
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=21.05 E-value=52 Score=30.92 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCChHHHHHHHHhcccCCCcEEe
Q 003167 1 METDTLAIVGPQSAVMAHVLSHLANELQVPLLS 33 (843)
Q Consensus 1 ~~~~V~aiiGp~~S~~~~av~~~~~~~~vP~Is 33 (843)
|+..+++|.|+++|+-+.....+++++++|++.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 445789999999999999888899999999996
No 433
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=20.95 E-value=66 Score=31.58 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=45.9
Q ss_pred cEEEEEEe--cCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh
Q 003167 73 GEVIAIFN--DDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS 141 (843)
Q Consensus 73 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~ 141 (843)
+.|+++.. ++.|.......+.+++++.|..+.....- + .......++.+.+.++|.|| ....
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~----~~~~~~~~~~l~~~~vdgiI-~~~~ 69 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--T----SQAGTDPITSALSMRPDGII-IAQD 69 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--S----SCSSSCHHHHHHTTCCSEEE-EESC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--C----chHHHHHHHHHHhCCCCEEE-ecCC
Confidence 57888886 46688899999999999999988765432 2 22234567778888999999 5443
No 434
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=20.63 E-value=2.4e+02 Score=26.53 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCC-cEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHH-HHHHHHhcCCCeEEEE
Q 003167 60 MSAIAEMVSYFGW-GEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVR-NELVKVRMMEARVIVV 137 (843)
Q Consensus 60 ~~ai~~ll~~~~w-~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~-~~l~~i~~~~~~viv~ 137 (843)
.+++.+-.+.-.. -+|+.|.+|..- ....+.+++.|+.+.....-.. .+..++. ..+..|++.++|+|++
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~---~~r~~~d~~~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY---PSKEAYEIEVVQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc---CchhhhHHHHHHHHHhcCCCEEEE
Confidence 3555555443222 367777776432 1455677888988653221111 1234443 4567788899999999
Q ss_pred EcChhhHH-HHHHHH
Q 003167 138 HGYSRTGL-MVFDVA 151 (843)
Q Consensus 138 ~~~~~~~~-~i~~~a 151 (843)
.++..... .++...
T Consensus 88 agy~~Il~~~~l~~~ 102 (211)
T 3p9x_A 88 AGYMRLVGPTLLGAY 102 (211)
T ss_dssp SSCCSCCCHHHHHHH
T ss_pred eCchhhcCHHHHhhc
Confidence 98865443 344443
No 435
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.63 E-value=3.1e+02 Score=21.49 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=54.8
Q ss_pred CceEEcCCChHHhHHHHHHHHHHcCCcEEEEEEecCCCCcchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHH
Q 003167 47 PFFVQTAPNDLYLMSAIAEMVSYFGWGEVIAIFNDDDQGRNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVK 126 (843)
Q Consensus 47 p~~fR~~p~d~~~~~ai~~ll~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~ 126 (843)
..+.-....|...+.....+++.+|-.-..+||+.| +..++.|.......|.+|-.. ....||..-|.+
T Consensus 51 ativvvvvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv--------tspddfkksler 119 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV--------TSPDDFKKSLER 119 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHH
T ss_pred CeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe--------cChHHHHHHHHH
Confidence 355666778888999999999999999999999654 457888999999999887632 126788777776
Q ss_pred Hh
Q 003167 127 VR 128 (843)
Q Consensus 127 i~ 128 (843)
+.
T Consensus 120 li 121 (134)
T 2l69_A 120 LI 121 (134)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 436
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.39 E-value=3.6e+02 Score=22.17 Aligned_cols=58 Identities=9% Similarity=-0.023 Sum_probs=37.8
Q ss_pred chHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCC-CeEEEEEcC--hhhHHHHHHHHHHcC
Q 003167 87 NGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMME-ARVIVVHGY--SRTGLMVFDVAQRLG 155 (843)
Q Consensus 87 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~-~~viv~~~~--~~~~~~i~~~a~~~g 155 (843)
.....+.+.+++.|.++... . +....+..+.... +|+|++... ..++..+++++++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~--------~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA---D--------GAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE---S--------SHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe---C--------CHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 35677788888888776531 1 1234455555555 899998754 345777888888753
No 437
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=20.28 E-value=1.9e+02 Score=25.59 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=41.8
Q ss_pred EEEEEEecCCCC--cchHHHHHHHHHhcCcEEEEeeecCCCCCCChhHHHHHHHHHhcCCCeEEEEEcCh--hhH--HHH
Q 003167 74 EVIAIFNDDDQG--RNGVTALGDKLAEIRCKISYKSALPPDQSVTETDVRNELVKVRMMEARVIVVHGYS--RTG--LMV 147 (843)
Q Consensus 74 ~v~ii~~d~~~g--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~viv~~~~~--~~~--~~i 147 (843)
++.|+|. +.+| +..++.+.+.+.+.|+.+... ... ..+....+.++. +.|.|++.+.. ... ..+
T Consensus 2 kv~IvY~-S~tGnT~~~A~~ia~~l~~~g~~v~~~---~~~----~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~f 71 (161)
T 3hly_A 2 SVLIGYL-SDYGYSDRLSQAIGRGLVKTGVAVEMV---DLR----AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATA 71 (161)
T ss_dssp CEEEEEC-TTSTTHHHHHHHHHHHHHHTTCCEEEE---ETT----TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHH
T ss_pred EEEEEEE-CCChHHHHHHHHHHHHHHhCCCeEEEE---ECC----CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHH
Confidence 4677774 3444 567888888898888765432 222 233444455554 35666665432 122 356
Q ss_pred HHHHHHcCCcc
Q 003167 148 FDVAQRLGMMD 158 (843)
Q Consensus 148 ~~~a~~~g~~~ 158 (843)
+.......+..
T Consensus 72 l~~l~~~~l~g 82 (161)
T 3hly_A 72 LSTIFAAAHNK 82 (161)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHhhhhCC
Confidence 66665544433
Done!