Query 003169
Match_columns 843
No_of_seqs 320 out of 2779
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 18:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469 Elongation factor 2 [T 100.0 6E-181 1E-185 1422.6 51.3 840 1-843 1-842 (842)
2 PLN00116 translation elongatio 100.0 4E-157 9E-162 1421.9 87.6 840 1-843 1-843 (843)
3 PTZ00416 elongation factor 2; 100.0 1E-155 3E-160 1405.9 84.7 834 1-843 1-836 (836)
4 KOG0468 U5 snRNP-specific prot 100.0 2E-141 4E-146 1153.7 58.2 824 3-842 112-954 (971)
5 PRK07560 elongation factor EF- 100.0 2E-128 4E-133 1160.4 70.8 720 5-841 6-731 (731)
6 COG0480 FusA Translation elong 100.0 1E-127 2E-132 1116.9 61.4 666 16-829 7-697 (697)
7 KOG0467 Translation elongation 100.0 1E-127 2E-132 1067.2 44.9 802 14-843 4-884 (887)
8 KOG0465 Mitochondrial elongati 100.0 2E-125 3E-130 1029.2 41.7 659 17-821 37-719 (721)
9 TIGR00490 aEF-2 translation el 100.0 1E-122 2E-127 1107.7 67.8 712 5-832 5-720 (720)
10 PRK12739 elongation factor G; 100.0 2E-114 5E-119 1033.9 66.2 665 16-822 5-687 (691)
11 PRK00007 elongation factor G; 100.0 1E-113 2E-118 1027.3 64.3 666 16-822 7-690 (693)
12 TIGR00484 EF-G translation elo 100.0 3E-111 7E-116 1007.7 63.1 663 15-822 6-687 (689)
13 PRK13351 elongation factor G; 100.0 2E-108 4E-113 986.8 63.9 660 16-820 5-685 (687)
14 PRK12740 elongation factor G; 100.0 1E-101 3E-106 926.6 62.0 642 25-809 1-662 (668)
15 KOG0464 Elongation factor G [T 100.0 8.2E-97 2E-101 767.2 28.9 659 17-808 35-740 (753)
16 TIGR01394 TypA_BipA GTP-bindin 100.0 1E-77 2.2E-82 698.4 49.8 464 19-809 1-475 (594)
17 PRK10218 GTP-binding protein; 100.0 4.7E-76 1E-80 682.9 49.9 465 17-808 3-479 (607)
18 PRK05433 GTP-binding protein L 100.0 3.4E-74 7.4E-79 671.7 47.9 471 14-805 2-481 (600)
19 TIGR01393 lepA GTP-binding pro 100.0 3.1E-73 6.6E-78 663.1 50.5 465 18-804 2-477 (595)
20 COG1217 TypA Predicted membran 100.0 9.4E-67 2E-71 553.1 38.1 466 17-809 3-479 (603)
21 PRK00741 prfC peptide chain re 100.0 2.2E-66 4.9E-71 596.4 38.0 437 13-569 4-472 (526)
22 KOG0462 Elongation factor-type 100.0 4.2E-65 9.1E-70 551.0 32.7 470 17-808 58-535 (650)
23 TIGR00503 prfC peptide chain r 100.0 3.4E-64 7.4E-69 578.5 38.5 433 12-564 4-468 (527)
24 COG0481 LepA Membrane GTPase L 100.0 3E-60 6.4E-65 505.3 35.9 471 15-804 5-483 (603)
25 COG4108 PrfC Peptide chain rel 100.0 3.9E-52 8.5E-57 440.3 23.5 434 16-561 9-466 (528)
26 cd01885 EF2 EF2 (for archaea a 100.0 1.2E-39 2.6E-44 336.2 22.2 204 20-229 1-209 (222)
27 cd01683 EF2_IV_snRNP EF-2_doma 100.0 5.5E-38 1.2E-42 311.0 17.6 174 559-732 1-178 (178)
28 cd01886 EF-G Elongation factor 100.0 1.5E-36 3.3E-41 323.0 22.5 255 21-343 1-270 (270)
29 CHL00071 tufA elongation facto 100.0 2.9E-33 6.3E-38 316.2 28.3 300 11-471 4-307 (409)
30 cd04169 RF3 RF3 subfamily. Pe 100.0 8.8E-34 1.9E-38 301.5 20.5 248 18-343 1-267 (267)
31 cd04168 TetM_like Tet(M)-like 100.0 3E-33 6.4E-38 292.7 23.0 223 21-343 1-237 (237)
32 COG5256 TEF1 Translation elong 100.0 1.3E-32 2.8E-37 293.6 27.5 288 16-472 4-317 (428)
33 PRK12736 elongation factor Tu; 100.0 6.2E-32 1.3E-36 303.9 28.3 286 15-471 8-297 (394)
34 cd01681 aeEF2_snRNP_like_IV Th 100.0 7.6E-33 1.6E-37 276.6 17.2 173 559-731 1-177 (177)
35 PLN03126 Elongation factor Tu; 100.0 2.4E-31 5.1E-36 302.8 29.0 304 7-471 69-376 (478)
36 PRK12735 elongation factor Tu; 100.0 2.9E-31 6.3E-36 298.7 27.8 292 11-471 4-299 (396)
37 PLN00043 elongation factor 1-a 100.0 2.8E-31 6.1E-36 301.3 27.5 289 15-470 3-317 (447)
38 TIGR00485 EF-Tu translation el 100.0 1E-30 2.3E-35 294.4 28.6 287 13-470 6-296 (394)
39 PTZ00141 elongation factor 1- 100.0 8.4E-31 1.8E-35 297.6 27.9 289 15-470 3-317 (446)
40 PRK00049 elongation factor Tu; 100.0 1.5E-30 3.3E-35 292.6 28.5 291 12-471 5-299 (396)
41 KOG0460 Mitochondrial translat 100.0 1.9E-31 4E-36 274.5 16.9 288 16-472 51-342 (449)
42 COG0050 TufB GTPases - transla 100.0 9.7E-31 2.1E-35 264.5 18.9 286 14-470 7-296 (394)
43 cd04170 EF-G_bact Elongation f 100.0 9.2E-31 2E-35 280.4 19.9 252 21-343 1-268 (268)
44 PRK05306 infB translation init 100.0 2E-29 4.3E-34 299.3 32.3 314 17-537 288-628 (787)
45 PLN03127 Elongation factor Tu; 100.0 3E-29 6.5E-34 284.4 29.5 288 16-470 58-349 (447)
46 cd04167 Snu114p Snu114p subfam 100.0 1.7E-29 3.8E-34 261.3 21.7 197 20-229 1-200 (213)
47 TIGR02034 CysN sulfate adenyly 100.0 1.4E-28 3.1E-33 277.6 27.3 146 21-190 2-165 (406)
48 PRK12317 elongation factor 1-a 100.0 1.2E-28 2.7E-33 280.9 26.8 286 17-471 4-310 (425)
49 TIGR00483 EF-1_alpha translati 100.0 5.2E-28 1.1E-32 275.7 27.8 288 14-470 2-311 (426)
50 PRK05124 cysN sulfate adenylyl 100.0 6.8E-28 1.5E-32 275.9 28.7 150 16-189 24-191 (474)
51 TIGR00487 IF-2 translation ini 100.0 6.5E-27 1.4E-31 272.4 32.9 305 18-522 86-419 (587)
52 PTZ00327 eukaryotic translatio 100.0 8.4E-27 1.8E-31 263.7 25.7 134 17-163 32-184 (460)
53 CHL00189 infB translation init 99.9 4.5E-26 9.7E-31 268.3 30.0 302 17-513 242-567 (742)
54 KOG0458 Elongation factor 1 al 99.9 3.9E-26 8.4E-31 251.9 25.2 288 16-469 174-488 (603)
55 PF00009 GTP_EFTU: Elongation 99.9 3.3E-27 7.1E-32 239.5 13.4 170 17-220 1-175 (188)
56 PRK05506 bifunctional sulfate 99.9 1E-25 2.2E-30 268.4 27.3 148 19-190 24-189 (632)
57 PRK10512 selenocysteinyl-tRNA- 99.9 7.2E-25 1.6E-29 257.3 26.6 115 21-163 2-117 (614)
58 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.1E-25 2.3E-30 228.7 15.5 166 20-218 3-169 (195)
59 PRK04000 translation initiatio 99.9 1.8E-24 3.9E-29 244.2 26.8 136 15-163 5-152 (411)
60 TIGR03680 eif2g_arch translati 99.9 8.6E-24 1.9E-28 238.9 27.0 133 18-163 3-147 (406)
61 TIGR00475 selB selenocysteine- 99.9 7.5E-23 1.6E-27 239.8 28.6 114 21-163 2-116 (581)
62 COG2895 CysN GTPases - Sulfate 99.9 1.4E-23 3.1E-28 218.2 19.0 152 17-192 4-173 (431)
63 COG5257 GCD11 Translation init 99.9 3.8E-22 8.1E-27 205.0 25.9 329 17-535 8-362 (415)
64 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.6E-23 3.4E-28 215.9 16.0 146 21-190 1-162 (208)
65 cd01883 EF1_alpha Eukaryotic e 99.9 1.1E-23 2.3E-28 218.9 14.4 170 21-220 1-193 (219)
66 KOG1145 Mitochondrial translat 99.9 3.6E-22 7.8E-27 217.7 21.3 125 18-177 152-276 (683)
67 COG5258 GTPBP1 GTPase [General 99.9 3.4E-22 7.4E-27 209.2 17.1 300 18-470 116-436 (527)
68 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 3.2E-23 6.9E-28 178.7 7.4 80 727-806 1-80 (80)
69 COG3276 SelB Selenocysteine-sp 99.9 3.3E-21 7E-26 208.1 21.2 114 21-163 2-116 (447)
70 COG0532 InfB Translation initi 99.9 4.4E-21 9.5E-26 212.5 22.8 127 19-178 5-131 (509)
71 KOG0459 Polypeptide release fa 99.9 6.6E-22 1.4E-26 208.6 12.4 290 16-472 76-391 (501)
72 cd01891 TypA_BipA TypA (tyrosi 99.9 5.7E-21 1.2E-25 194.8 17.4 143 18-180 1-143 (194)
73 PRK04004 translation initiatio 99.9 3.4E-20 7.3E-25 216.9 25.5 125 19-163 6-136 (586)
74 PF00679 EFG_C: Elongation fac 99.8 5.6E-21 1.2E-25 168.6 7.8 85 724-809 1-85 (89)
75 cd01890 LepA LepA subfamily. 99.8 9.2E-20 2E-24 182.9 17.6 132 20-163 1-132 (179)
76 smart00838 EFG_C Elongation fa 99.8 4.2E-21 9.1E-26 168.1 6.7 83 725-809 1-83 (85)
77 cd04096 eEF2_snRNP_like_C eEF2 99.8 1.7E-20 3.7E-25 162.2 7.8 80 727-806 1-80 (80)
78 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.6E-20 5.7E-25 160.1 7.4 78 727-806 1-78 (78)
79 cd01888 eIF2_gamma eIF2-gamma 99.8 1.6E-19 3.4E-24 185.5 13.3 131 20-163 1-150 (203)
80 PF03764 EFG_IV: Elongation fa 99.8 9.9E-20 2.1E-24 170.6 10.8 99 622-722 22-120 (120)
81 PF14492 EFG_II: Elongation Fa 99.8 6.7E-20 1.4E-24 155.6 7.6 73 485-559 2-75 (75)
82 TIGR00491 aIF-2 translation in 99.8 1.1E-17 2.3E-22 195.0 28.6 129 19-163 4-134 (590)
83 cd03711 Tet_C Tet_C: C-terminu 99.8 4.8E-20 1.1E-24 158.5 6.8 78 727-806 1-78 (78)
84 KOG0461 Selenocysteine-specifi 99.8 2.6E-18 5.7E-23 177.6 18.8 129 19-163 7-135 (522)
85 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 9.1E-20 2E-24 157.0 6.9 78 727-806 1-78 (78)
86 cd03710 BipA_TypA_C BipA_TypA_ 99.8 2.7E-19 5.9E-24 154.1 7.9 78 727-805 1-78 (79)
87 cd04165 GTPBP1_like GTPBP1-lik 99.8 7.8E-19 1.7E-23 182.3 12.2 156 21-189 1-167 (224)
88 cd01514 Elongation_Factor_C El 99.8 4.2E-19 9E-24 153.3 7.2 79 727-806 1-79 (79)
89 cd01889 SelB_euk SelB subfamil 99.8 5.2E-18 1.1E-22 172.6 16.0 132 21-163 2-133 (192)
90 cd03709 lepA_C lepA_C: This fa 99.8 1.3E-18 2.7E-23 150.2 6.8 78 727-805 1-79 (80)
91 cd00881 GTP_translation_factor 99.7 3.2E-17 7E-22 165.5 15.8 127 21-163 1-127 (189)
92 cd04090 eEF2_II_snRNP Loc2 eEF 99.7 5.2E-17 1.1E-21 144.9 11.5 94 376-469 1-94 (94)
93 cd04171 SelB SelB subfamily. 99.7 4.8E-16 1E-20 153.1 14.4 115 21-163 2-117 (164)
94 cd03690 Tet_II Tet_II: This su 99.7 1.9E-16 4.1E-21 138.4 10.0 83 373-468 1-84 (85)
95 cd01684 Tet_like_IV EF-G_domai 99.6 9.9E-16 2.2E-20 141.8 11.5 112 562-722 1-115 (115)
96 PRK14845 translation initiatio 99.6 2.6E-14 5.7E-19 174.1 24.8 116 32-163 474-591 (1049)
97 cd04092 mtEFG2_II_like mtEFG2_ 99.6 2.3E-15 5E-20 131.2 9.8 82 376-469 1-83 (83)
98 KOG0463 GTP-binding protein GP 99.6 1.8E-15 3.8E-20 158.2 10.0 306 20-471 134-456 (641)
99 cd01680 EFG_like_IV Elongation 99.6 8.1E-15 1.8E-19 136.5 12.0 112 564-722 1-116 (116)
100 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.9E-14 4.1E-19 142.5 14.2 114 21-163 2-115 (168)
101 cd03689 RF3_II RF3_II: this su 99.6 6.1E-15 1.3E-19 128.7 9.3 80 378-469 1-84 (85)
102 PRK00093 GTP-binding protein D 99.6 2.3E-14 5E-19 164.7 16.9 115 18-163 172-297 (435)
103 cd03700 eEF2_snRNP_like_II EF2 99.6 1.1E-14 2.5E-19 129.6 11.2 91 376-469 1-92 (93)
104 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.1E-14 2.3E-19 127.0 9.6 81 376-468 1-82 (83)
105 COG1160 Predicted GTPases [Gen 99.6 3.4E-14 7.4E-19 155.7 15.3 114 19-163 178-302 (444)
106 cd04091 mtEFG1_II_like mtEFG1_ 99.6 2E-14 4.2E-19 124.7 9.8 80 376-469 1-81 (81)
107 TIGR03594 GTPase_EngA ribosome 99.5 6E-14 1.3E-18 161.0 16.0 114 19-163 172-296 (429)
108 COG1159 Era GTPase [General fu 99.5 9.8E-14 2.1E-18 144.4 15.7 114 19-163 6-127 (298)
109 COG1160 Predicted GTPases [Gen 99.5 5.4E-14 1.2E-18 154.1 12.0 113 20-163 4-125 (444)
110 cd03691 BipA_TypA_II BipA_TypA 99.5 8E-14 1.7E-18 122.4 10.6 84 376-468 1-85 (86)
111 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.5 6E-14 1.3E-18 130.5 9.1 76 644-722 40-116 (116)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.6E-13 3.4E-18 136.0 12.5 115 21-163 1-120 (167)
113 cd01894 EngA1 EngA1 subfamily. 99.5 1.6E-13 3.4E-18 134.0 11.5 110 23-163 1-118 (157)
114 cd01895 EngA2 EngA2 subfamily. 99.5 5.9E-13 1.3E-17 131.9 15.4 114 19-163 2-126 (174)
115 KOG0466 Translation initiation 99.5 1.9E-13 4E-18 139.9 10.0 134 17-163 36-192 (466)
116 COG2229 Predicted GTPase [Gene 99.4 8E-13 1.7E-17 127.6 13.0 130 19-173 10-141 (187)
117 PRK15494 era GTPase Era; Provi 99.4 8.4E-13 1.8E-17 145.8 15.1 115 18-163 51-173 (339)
118 PRK03003 GTP-binding protein D 99.4 8.6E-13 1.9E-17 152.6 15.7 115 18-163 210-335 (472)
119 cd03699 lepA_II lepA_II: This 99.4 3.2E-13 6.9E-18 118.4 9.3 81 376-469 1-86 (86)
120 TIGR03598 GTPase_YsxC ribosome 99.4 1.1E-12 2.4E-17 131.9 14.5 114 17-163 16-142 (179)
121 PRK09554 feoB ferrous iron tra 99.4 5.2E-12 1.1E-16 152.2 21.5 110 20-163 4-125 (772)
122 TIGR03594 GTPase_EngA ribosome 99.4 6.2E-13 1.3E-17 152.6 12.3 112 21-163 1-120 (429)
123 cd01864 Rab19 Rab19 subfamily. 99.4 1E-12 2.2E-17 130.0 12.2 116 18-163 2-121 (165)
124 PF02421 FeoB_N: Ferrous iron 99.4 6.8E-13 1.5E-17 128.6 10.2 109 21-163 2-118 (156)
125 KOG1144 Translation initiation 99.4 4.4E-13 9.6E-18 150.8 10.1 128 21-164 477-606 (1064)
126 PRK03003 GTP-binding protein D 99.4 1.1E-12 2.4E-17 151.7 13.7 116 17-163 36-159 (472)
127 TIGR00436 era GTP-binding prot 99.4 2.3E-12 4.9E-17 138.4 14.6 111 21-163 2-120 (270)
128 cd01693 mtEFG2_like_IV mtEF-G2 99.4 6.4E-13 1.4E-17 124.4 9.0 116 562-722 1-120 (120)
129 PRK09518 bifunctional cytidyla 99.4 2.4E-12 5.3E-17 155.7 15.2 115 18-163 449-574 (712)
130 PRK00093 GTP-binding protein D 99.4 1.9E-12 4E-17 148.9 13.2 113 20-163 2-122 (435)
131 cd04164 trmE TrmE (MnmE, ThdF, 99.4 2.8E-12 6.1E-17 125.0 12.0 110 21-163 3-120 (157)
132 cd01879 FeoB Ferrous iron tran 99.4 1.9E-12 4.2E-17 126.6 10.8 106 24-163 1-114 (158)
133 cd04114 Rab30 Rab30 subfamily. 99.4 3.7E-12 8E-17 126.3 12.4 119 13-163 1-125 (169)
134 cd01898 Obg Obg subfamily. Th 99.4 6.6E-12 1.4E-16 124.6 13.7 111 21-163 2-127 (170)
135 cd04105 SR_beta Signal recogni 99.4 8.9E-12 1.9E-16 127.9 14.9 129 20-183 1-139 (203)
136 PRK15467 ethanolamine utilizat 99.4 4E-12 8.6E-17 125.2 11.5 99 20-163 2-104 (158)
137 cd04154 Arl2 Arl2 subfamily. 99.3 9.1E-12 2E-16 124.4 13.4 113 16-163 11-128 (173)
138 cd04124 RabL2 RabL2 subfamily. 99.3 5.6E-12 1.2E-16 124.4 11.7 113 21-163 2-117 (161)
139 cd04157 Arl6 Arl6 subfamily. 99.3 1E-11 2.2E-16 122.1 13.4 110 21-163 1-117 (162)
140 smart00178 SAR Sar1p-like memb 99.3 1.1E-11 2.3E-16 125.3 13.8 120 9-163 7-131 (184)
141 PRK09518 bifunctional cytidyla 99.3 5.9E-12 1.3E-16 152.4 14.2 115 18-163 274-396 (712)
142 cd00878 Arf_Arl Arf (ADP-ribos 99.3 7E-12 1.5E-16 122.9 11.9 108 21-163 1-113 (158)
143 PRK00089 era GTPase Era; Revie 99.3 1.7E-11 3.6E-16 133.4 15.9 115 18-163 4-126 (292)
144 cd04151 Arl1 Arl1 subfamily. 99.3 9.9E-12 2.2E-16 122.1 12.8 108 21-163 1-113 (158)
145 cd04115 Rab33B_Rab33A Rab33B/R 99.3 8.4E-12 1.8E-16 124.2 12.4 115 19-163 2-122 (170)
146 PF01926 MMR_HSR1: 50S ribosom 99.3 1.3E-11 2.9E-16 114.7 12.8 107 21-159 1-116 (116)
147 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.1E-11 2.4E-16 122.0 12.9 112 20-163 3-120 (164)
148 TIGR00231 small_GTP small GTP- 99.3 4.6E-12 1E-16 122.8 9.9 113 20-163 2-121 (161)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2E-11 4.4E-16 122.1 14.8 120 8-163 5-129 (174)
150 cd04113 Rab4 Rab4 subfamily. 99.3 9.9E-12 2.2E-16 122.3 11.9 113 21-163 2-118 (161)
151 cd00879 Sar1 Sar1 subfamily. 99.3 1.4E-11 3E-16 124.9 13.1 120 9-163 9-133 (190)
152 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.6E-11 3.5E-16 122.0 13.2 108 21-163 1-113 (167)
153 cd04106 Rab23_lke Rab23-like s 99.3 1.4E-11 3.1E-16 121.1 12.2 115 21-163 2-119 (162)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.5E-11 3.2E-16 140.1 13.6 113 19-163 203-323 (442)
155 cd01866 Rab2 Rab2 subfamily. 99.3 1.5E-11 3.4E-16 122.1 11.8 115 19-163 4-122 (168)
156 cd01893 Miro1 Miro1 subfamily. 99.3 4.6E-11 1E-15 118.4 15.1 111 21-163 2-116 (166)
157 smart00175 RAB Rab subfamily o 99.3 1.8E-11 3.9E-16 120.5 12.1 113 21-163 2-118 (164)
158 cd04163 Era Era subfamily. Er 99.3 4.8E-11 1E-15 117.1 15.1 114 19-163 3-124 (168)
159 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 2E-11 4.2E-16 121.0 12.0 108 22-163 2-112 (164)
160 cd01897 NOG NOG1 is a nucleola 99.3 2.4E-11 5.2E-16 120.3 12.5 112 20-163 1-126 (168)
161 cd01882 BMS1 Bms1. Bms1 is an 99.3 7.3E-11 1.6E-15 123.0 16.4 108 18-163 38-146 (225)
162 cd01861 Rab6 Rab6 subfamily. 99.3 2E-11 4.3E-16 119.9 11.4 114 20-163 1-118 (161)
163 cd01862 Rab7 Rab7 subfamily. 99.3 2.7E-11 5.8E-16 120.3 11.8 113 21-163 2-122 (172)
164 PRK05291 trmE tRNA modificatio 99.3 2E-11 4.4E-16 139.8 12.2 111 20-163 216-334 (449)
165 cd04159 Arl10_like Arl10-like 99.3 3.3E-11 7.1E-16 117.3 12.0 108 22-163 2-114 (159)
166 cd01878 HflX HflX subfamily. 99.3 3.2E-11 7E-16 123.8 12.5 116 17-163 39-166 (204)
167 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 3.4E-11 7.4E-16 121.5 12.3 113 21-163 5-122 (183)
168 cd01863 Rab18 Rab18 subfamily. 99.3 2.8E-11 6E-16 119.0 11.0 113 21-163 2-119 (161)
169 KOG1143 Predicted translation 99.3 2.4E-11 5.2E-16 127.6 10.9 157 20-190 168-333 (591)
170 smart00173 RAS Ras subfamily o 99.3 3.2E-11 6.9E-16 119.0 11.1 111 21-163 2-118 (164)
171 PRK04213 GTP-binding protein; 99.2 5.9E-11 1.3E-15 121.6 13.2 111 17-163 7-143 (201)
172 cd01867 Rab8_Rab10_Rab13_like 99.2 5.2E-11 1.1E-15 118.1 12.4 115 19-163 3-121 (167)
173 cd00877 Ran Ran (Ras-related n 99.2 4.9E-11 1.1E-15 118.4 11.7 113 21-163 2-117 (166)
174 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.2 6.1E-11 1.3E-15 117.3 12.4 115 19-163 2-120 (166)
175 cd04147 Ras_dva Ras-dva subfam 99.2 3.4E-11 7.4E-16 123.1 10.9 112 21-163 1-117 (198)
176 cd04137 RheB Rheb (Ras Homolog 99.2 4.5E-11 9.7E-16 120.0 11.5 113 20-163 2-119 (180)
177 cd00154 Rab Rab family. Rab G 99.2 5.1E-11 1.1E-15 115.8 11.5 113 21-163 2-118 (159)
178 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 1.4E-10 3E-15 118.9 15.0 112 21-163 2-123 (201)
179 cd01860 Rab5_related Rab5-rela 99.2 4.7E-11 1E-15 117.6 11.0 113 21-163 3-119 (163)
180 cd04122 Rab14 Rab14 subfamily. 99.2 6.3E-11 1.4E-15 117.3 11.9 114 20-163 3-120 (166)
181 PRK00454 engB GTP-binding prot 99.2 1.2E-10 2.6E-15 118.5 14.2 114 17-163 22-148 (196)
182 cd04146 RERG_RasL11_like RERG/ 99.2 3.8E-11 8.2E-16 118.8 10.1 112 21-163 1-119 (165)
183 cd04119 RJL RJL (RabJ-Like) su 99.2 6.8E-11 1.5E-15 116.7 11.8 113 21-163 2-123 (168)
184 cd04138 H_N_K_Ras_like H-Ras/N 99.2 7E-11 1.5E-15 115.8 11.8 112 21-163 3-119 (162)
185 cd04158 ARD1 ARD1 subfamily. 99.2 1E-10 2.3E-15 116.3 13.1 108 21-163 1-113 (169)
186 cd04116 Rab9 Rab9 subfamily. 99.2 1.7E-10 3.8E-15 114.6 14.6 116 18-163 4-127 (170)
187 cd04175 Rap1 Rap1 subgroup. T 99.2 1.1E-10 2.4E-15 115.2 13.1 111 21-163 3-119 (164)
188 cd04149 Arf6 Arf6 subfamily. 99.2 1E-10 2.2E-15 116.4 12.8 110 19-163 9-123 (168)
189 COG0218 Predicted GTPase [Gene 99.2 1.9E-10 4.2E-15 113.9 14.4 113 17-163 22-148 (200)
190 cd00880 Era_like Era (E. coli 99.2 8.2E-11 1.8E-15 114.0 11.7 110 24-163 1-117 (163)
191 cd04120 Rab12 Rab12 subfamily. 99.2 9.9E-11 2.1E-15 119.9 12.6 113 21-163 2-118 (202)
192 PTZ00369 Ras-like protein; Pro 99.2 6.8E-11 1.5E-15 120.0 11.3 114 19-163 5-123 (189)
193 cd04123 Rab21 Rab21 subfamily. 99.2 9.4E-11 2E-15 114.9 11.8 113 21-163 2-118 (162)
194 cd04155 Arl3 Arl3 subfamily. 99.2 1.5E-10 3.1E-15 115.4 13.2 112 17-163 12-128 (173)
195 TIGR02528 EutP ethanolamine ut 99.2 4.1E-11 8.8E-16 115.4 8.8 97 20-163 1-101 (142)
196 TIGR03156 GTP_HflX GTP-binding 99.2 9.5E-11 2E-15 129.8 12.6 115 18-163 188-314 (351)
197 COG0486 ThdF Predicted GTPase 99.2 8.3E-11 1.8E-15 129.6 12.0 112 20-163 218-337 (454)
198 cd04139 RalA_RalB RalA/RalB su 99.2 1.6E-10 3.6E-15 113.5 13.0 112 21-163 2-118 (164)
199 PF09439 SRPRB: Signal recogni 99.2 1E-10 2.3E-15 115.9 11.5 129 19-185 3-144 (181)
200 cd04150 Arf1_5_like Arf1-Arf5- 99.2 2E-10 4.4E-15 113.1 13.5 108 21-163 2-114 (159)
201 cd04177 RSR1 RSR1 subgroup. R 99.2 1E-10 2.3E-15 116.1 11.3 111 21-163 3-119 (168)
202 cd04156 ARLTS1 ARLTS1 subfamil 99.2 1.1E-10 2.3E-15 114.8 11.2 109 21-163 1-114 (160)
203 PLN03118 Rab family protein; P 99.2 1.2E-10 2.5E-15 120.5 11.9 114 19-163 14-133 (211)
204 PLN00223 ADP-ribosylation fact 99.2 2.6E-10 5.6E-15 114.9 13.9 111 18-163 16-131 (181)
205 cd04140 ARHI_like ARHI subfami 99.2 1.5E-10 3.4E-15 114.5 12.0 112 20-163 2-121 (165)
206 cd04136 Rap_like Rap-like subf 99.2 1.3E-10 2.8E-15 114.3 11.4 112 20-163 2-119 (163)
207 cd01865 Rab3 Rab3 subfamily. 99.2 1.2E-10 2.5E-15 115.4 11.0 114 20-163 2-119 (165)
208 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 2.9E-10 6.3E-15 116.1 14.1 113 20-163 1-129 (196)
209 smart00177 ARF ARF-like small 99.2 2.5E-10 5.5E-15 114.3 13.3 110 19-163 13-127 (175)
210 cd01868 Rab11_like Rab11-like. 99.2 1.8E-10 3.8E-15 113.8 12.0 115 19-163 3-121 (165)
211 cd04110 Rab35 Rab35 subfamily. 99.2 2.1E-10 4.6E-15 117.4 12.6 116 18-163 5-123 (199)
212 KOG0084 GTPase Rab1/YPT1, smal 99.2 1.8E-10 3.9E-15 112.4 11.3 117 17-163 7-127 (205)
213 COG1084 Predicted GTPase [Gene 99.2 3.4E-10 7.4E-15 119.0 14.1 114 17-163 166-293 (346)
214 cd04101 RabL4 RabL4 (Rab-like4 99.2 2.2E-10 4.7E-15 113.0 12.1 116 21-163 2-120 (164)
215 cd04112 Rab26 Rab26 subfamily. 99.2 1.6E-10 3.5E-15 117.4 11.5 114 21-163 2-119 (191)
216 cd04142 RRP22 RRP22 subfamily. 99.2 1.7E-10 3.7E-15 117.9 11.4 113 21-163 2-129 (198)
217 cd04144 Ras2 Ras2 subfamily. 99.2 2.2E-10 4.8E-15 116.3 12.2 112 21-163 1-119 (190)
218 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 1.7E-10 3.7E-15 115.0 11.1 113 21-163 2-119 (170)
219 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1.9E-10 4.2E-15 114.8 11.1 112 20-163 3-120 (172)
220 cd00876 Ras Ras family. The R 99.1 1.8E-10 4E-15 112.6 10.6 112 21-163 1-117 (160)
221 cd04127 Rab27A Rab27a subfamil 99.1 3.3E-10 7.3E-15 113.6 12.3 125 19-163 4-133 (180)
222 PRK11058 GTPase HflX; Provisio 99.1 3.1E-10 6.7E-15 128.6 13.1 114 19-163 197-322 (426)
223 PLN03071 GTP-binding nuclear p 99.1 3.5E-10 7.5E-15 117.6 12.2 117 17-163 11-130 (219)
224 PRK12298 obgE GTPase CgtA; Rev 99.1 5.9E-10 1.3E-14 124.9 14.8 114 19-163 159-288 (390)
225 cd04132 Rho4_like Rho4-like su 99.1 4.5E-10 9.8E-15 113.5 12.2 112 21-163 2-118 (187)
226 TIGR02729 Obg_CgtA Obg family 99.1 6.9E-10 1.5E-14 121.9 14.5 115 18-163 156-286 (329)
227 cd04176 Rap2 Rap2 subgroup. T 99.1 3.6E-10 7.8E-15 111.4 11.2 111 21-163 3-119 (163)
228 cd00882 Ras_like_GTPase Ras-li 99.1 2.8E-10 6.1E-15 108.8 10.1 110 24-163 1-115 (157)
229 PLN03110 Rab GTPase; Provision 99.1 4.5E-10 9.7E-15 116.6 12.2 117 17-163 10-130 (216)
230 smart00176 RAN Ran (Ras-relate 99.1 3.9E-10 8.5E-15 115.3 11.5 109 25-163 1-112 (200)
231 cd04126 Rab20 Rab20 subfamily. 99.1 5.5E-10 1.2E-14 115.8 12.6 108 21-163 2-113 (220)
232 cd04109 Rab28 Rab28 subfamily. 99.1 4.7E-10 1E-14 116.3 12.1 114 21-163 2-122 (215)
233 cd01881 Obg_like The Obg-like 99.1 2.9E-10 6.2E-15 113.3 10.1 109 24-163 1-133 (176)
234 PTZ00133 ADP-ribosylation fact 99.1 7.5E-10 1.6E-14 111.7 13.1 109 20-163 18-131 (182)
235 cd04121 Rab40 Rab40 subfamily. 99.1 7.4E-10 1.6E-14 112.3 13.1 117 17-163 4-123 (189)
236 cd04135 Tc10 TC10 subfamily. 99.1 2.5E-10 5.4E-15 113.8 9.3 111 21-163 2-117 (174)
237 cd04118 Rab24 Rab24 subfamily. 99.1 6.6E-10 1.4E-14 113.0 12.4 112 21-163 2-118 (193)
238 PF00025 Arf: ADP-ribosylation 99.1 5.1E-10 1.1E-14 112.1 11.2 112 17-163 12-128 (175)
239 cd01850 CDC_Septin CDC/Septin. 99.1 2.2E-09 4.7E-14 115.3 16.2 123 20-163 5-156 (276)
240 PRK12299 obgE GTPase CgtA; Rev 99.1 7.9E-10 1.7E-14 121.5 13.1 114 19-163 158-284 (335)
241 cd01874 Cdc42 Cdc42 subfamily. 99.1 5.3E-10 1.1E-14 112.0 10.7 112 20-163 2-118 (175)
242 cd00157 Rho Rho (Ras homology) 99.1 3.9E-10 8.4E-15 111.9 9.6 112 21-163 2-117 (171)
243 PF08477 Miro: Miro-like prote 99.1 2.8E-10 6E-15 106.1 7.7 113 21-161 1-119 (119)
244 cd04111 Rab39 Rab39 subfamily. 99.1 8.3E-10 1.8E-14 114.1 11.8 115 20-163 3-122 (211)
245 PF10662 PduV-EutP: Ethanolami 99.1 6.5E-10 1.4E-14 105.5 9.9 98 19-163 1-102 (143)
246 cd04128 Spg1 Spg1p. Spg1p (se 99.1 1.7E-09 3.6E-14 109.1 13.4 113 21-163 2-117 (182)
247 cd04134 Rho3 Rho3 subfamily. 99.1 5.9E-10 1.3E-14 113.1 10.0 112 20-163 1-117 (189)
248 KOG1423 Ras-like GTPase ERA [C 99.1 5.9E-10 1.3E-14 115.3 9.9 116 17-163 70-198 (379)
249 cd01892 Miro2 Miro2 subfamily. 99.1 1E-09 2.2E-14 109.3 11.4 115 17-163 2-121 (169)
250 KOG0052 Translation elongation 99.1 6.7E-11 1.5E-15 127.3 3.1 131 14-163 2-155 (391)
251 PLN03108 Rab family protein; P 99.1 1.5E-09 3.2E-14 112.1 12.9 116 18-163 5-124 (210)
252 smart00174 RHO Rho (Ras homolo 99.0 1.3E-09 2.7E-14 108.7 11.9 110 22-163 1-115 (174)
253 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.1E-09 4.6E-14 108.3 13.6 113 19-163 5-122 (182)
254 cd04125 RabA_like RabA-like su 99.0 9.9E-10 2.1E-14 111.3 11.2 113 21-163 2-118 (188)
255 cd04131 Rnd Rnd subfamily. Th 99.0 1.9E-09 4.1E-14 108.4 12.7 111 21-163 3-118 (178)
256 cd01871 Rac1_like Rac1-like su 99.0 1.2E-09 2.7E-14 109.2 10.8 111 21-163 3-118 (174)
257 PRK12296 obgE GTPase CgtA; Rev 99.0 2.5E-09 5.5E-14 121.9 14.6 114 18-163 158-297 (500)
258 cd01875 RhoG RhoG subfamily. 99.0 1.6E-09 3.4E-14 110.2 11.7 113 20-163 4-120 (191)
259 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 1.5E-09 3.2E-14 112.7 11.6 112 20-163 2-118 (222)
260 cd04133 Rop_like Rop subfamily 99.0 1.3E-09 2.8E-14 109.3 10.8 113 20-163 2-118 (176)
261 cd04102 RabL3 RabL3 (Rab-like3 99.0 2.4E-09 5.1E-14 109.6 12.9 118 21-163 2-142 (202)
262 cd01876 YihA_EngB The YihA (En 99.0 5.3E-09 1.2E-13 102.8 14.6 109 22-163 2-123 (170)
263 cd01870 RhoA_like RhoA-like su 99.0 1.3E-09 2.8E-14 108.7 9.7 112 20-163 2-118 (175)
264 cd04143 Rhes_like Rhes_like su 99.0 1.8E-09 3.9E-14 114.1 11.1 111 21-163 2-126 (247)
265 TIGR00437 feoB ferrous iron tr 99.0 1.6E-09 3.4E-14 128.0 11.6 104 26-163 1-112 (591)
266 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 3.1E-09 6.7E-14 110.9 12.3 112 20-163 14-130 (232)
267 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.4E-09 3E-14 108.6 9.2 112 21-163 2-117 (173)
268 PRK12297 obgE GTPase CgtA; Rev 99.0 5.4E-09 1.2E-13 117.8 15.0 114 19-163 158-287 (424)
269 cd04117 Rab15 Rab15 subfamily. 99.0 3.9E-09 8.5E-14 104.1 12.3 113 21-163 2-118 (161)
270 PTZ00132 GTP-binding nuclear p 99.0 5.8E-09 1.3E-13 108.1 13.3 115 19-163 9-126 (215)
271 KOG0073 GTP-binding ADP-ribosy 99.0 1.1E-08 2.4E-13 96.7 13.4 113 16-163 13-130 (185)
272 PLN00023 GTP-binding protein; 99.0 5.1E-09 1.1E-13 112.6 12.5 129 18-163 20-164 (334)
273 cd04104 p47_IIGP_like p47 (47- 98.9 4.3E-09 9.4E-14 107.5 11.3 113 21-163 3-120 (197)
274 PRK09866 hypothetical protein; 98.9 1.1E-08 2.4E-13 117.0 14.9 67 97-163 229-302 (741)
275 cd04148 RGK RGK subfamily. Th 98.9 6E-09 1.3E-13 108.5 11.7 112 21-163 2-119 (221)
276 COG3596 Predicted GTPase [Gene 98.9 2.1E-08 4.6E-13 103.4 13.3 159 17-220 37-210 (296)
277 cd01853 Toc34_like Toc34-like 98.9 6.7E-08 1.4E-12 102.0 17.4 118 15-163 27-162 (249)
278 KOG0080 GTPase Rab18, small G 98.9 5.6E-09 1.2E-13 98.0 7.3 116 18-163 10-130 (209)
279 KOG0095 GTPase Rab30, small G 98.9 4.1E-08 9E-13 90.8 12.9 117 17-163 5-125 (213)
280 KOG1191 Mitochondrial GTPase [ 98.8 1.3E-08 2.8E-13 112.0 10.9 118 15-163 264-402 (531)
281 PF00071 Ras: Ras family; Int 98.8 4.7E-08 1E-12 96.1 13.9 113 21-163 1-117 (162)
282 KOG0098 GTPase Rab2, small G p 98.8 1.7E-08 3.7E-13 97.5 10.1 113 19-163 6-124 (216)
283 KOG0078 GTP-binding protein SE 98.8 2.3E-08 5E-13 99.3 10.9 118 16-163 9-130 (207)
284 KOG0092 GTPase Rab5/YPT51 and 98.8 1.2E-08 2.6E-13 99.5 8.5 115 19-163 5-123 (200)
285 COG0370 FeoB Fe2+ transport sy 98.8 2E-08 4.4E-13 115.6 11.1 110 20-163 4-121 (653)
286 KOG0090 Signal recognition par 98.8 3.1E-08 6.7E-13 98.0 10.4 124 18-180 37-172 (238)
287 smart00053 DYNc Dynamin, GTPas 98.8 5.5E-08 1.2E-12 101.5 12.8 67 97-163 124-205 (240)
288 COG1100 GTPase SAR1 and relate 98.8 4.8E-08 1E-12 101.3 11.6 114 20-163 6-124 (219)
289 KOG1489 Predicted GTP-binding 98.8 5.9E-08 1.3E-12 101.4 11.8 115 18-163 195-325 (366)
290 KOG0070 GTP-binding ADP-ribosy 98.7 3E-08 6.6E-13 96.4 8.9 112 17-163 15-131 (181)
291 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.7 8.4E-08 1.8E-12 93.5 11.5 118 16-163 19-141 (221)
292 cd04129 Rho2 Rho2 subfamily. 98.7 4.7E-08 1E-12 98.9 10.2 112 20-163 2-118 (187)
293 COG2262 HflX GTPases [General 98.7 6.9E-08 1.5E-12 105.0 11.3 116 17-163 190-317 (411)
294 cd04103 Centaurin_gamma Centau 98.7 6.9E-08 1.5E-12 95.0 9.9 106 21-163 2-112 (158)
295 COG1163 DRG Predicted GTPase [ 98.7 9.8E-08 2.1E-12 100.3 11.0 110 19-161 63-184 (365)
296 cd01896 DRG The developmentall 98.7 2.2E-07 4.9E-12 97.4 13.9 97 21-150 2-105 (233)
297 KOG0086 GTPase Rab4, small G p 98.7 6.3E-08 1.4E-12 90.0 8.4 115 19-163 9-127 (214)
298 cd01873 RhoBTB RhoBTB subfamil 98.7 8.7E-08 1.9E-12 97.7 10.5 67 95-163 63-133 (195)
299 KOG0394 Ras-related GTPase [Ge 98.7 3.9E-08 8.5E-13 94.9 7.0 117 17-163 7-131 (210)
300 PF00350 Dynamin_N: Dynamin fa 98.7 7.3E-08 1.6E-12 95.5 8.8 64 97-160 100-168 (168)
301 KOG0075 GTP-binding ADP-ribosy 98.6 7E-08 1.5E-12 89.4 7.3 109 21-163 22-135 (186)
302 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 4.6E-07 1E-11 94.1 14.2 134 21-190 1-145 (232)
303 TIGR00991 3a0901s02IAP34 GTP-b 98.6 6.1E-07 1.3E-11 96.2 15.3 126 7-163 22-166 (313)
304 PF03144 GTP_EFTU_D2: Elongati 98.6 3.3E-08 7.1E-13 84.0 4.5 71 393-468 3-74 (74)
305 KOG0087 GTPase Rab11/YPT3, sma 98.6 2.3E-07 5E-12 91.9 9.7 116 18-163 13-132 (222)
306 KOG0395 Ras-related GTPase [Ge 98.6 2.2E-07 4.7E-12 94.5 9.6 113 19-163 3-121 (196)
307 TIGR02836 spore_IV_A stage IV 98.6 1E-06 2.2E-11 96.4 14.9 132 19-162 17-192 (492)
308 KOG0074 GTP-binding ADP-ribosy 98.6 4.5E-07 9.7E-12 83.6 10.2 114 16-163 14-132 (185)
309 KOG0071 GTP-binding ADP-ribosy 98.5 7.7E-07 1.7E-11 82.0 11.4 133 1-174 1-139 (180)
310 KOG0093 GTPase Rab3, small G p 98.5 5.5E-07 1.2E-11 83.5 10.3 115 19-163 21-139 (193)
311 KOG0079 GTP-binding protein H- 98.5 6.1E-07 1.3E-11 83.3 8.9 113 21-163 10-125 (198)
312 KOG1532 GTPase XAB1, interacts 98.5 2.2E-07 4.8E-12 95.0 6.0 87 97-184 115-215 (366)
313 KOG0076 GTP-binding ADP-ribosy 98.4 3.4E-07 7.4E-12 87.6 6.4 127 8-163 7-139 (197)
314 PRK13768 GTPase; Provisional 98.4 8.5E-07 1.8E-11 94.2 9.2 66 98-163 97-175 (253)
315 KOG0088 GTPase Rab21, small G 98.4 2.9E-07 6.3E-12 86.2 3.7 115 19-163 13-131 (218)
316 PF00735 Septin: Septin; Inte 98.3 5E-06 1.1E-10 89.3 13.1 123 20-163 5-155 (281)
317 COG4917 EutP Ethanolamine util 98.3 1.2E-06 2.5E-11 79.6 6.8 98 20-163 2-103 (148)
318 PRK09435 membrane ATPase/prote 98.3 3.4E-06 7.3E-11 92.3 11.1 61 94-163 145-207 (332)
319 PF05049 IIGP: Interferon-indu 98.3 2.7E-06 5.8E-11 93.7 9.9 113 19-164 35-155 (376)
320 PF04548 AIG1: AIG1 family; I 98.3 1.2E-05 2.6E-10 83.1 14.2 113 20-163 1-129 (212)
321 KOG0077 Vesicle coat complex C 98.2 5.4E-06 1.2E-10 78.9 9.6 115 17-170 18-137 (193)
322 COG0536 Obg Predicted GTPase [ 98.2 1.1E-05 2.4E-10 85.9 12.5 114 19-163 159-288 (369)
323 PF03029 ATP_bind_1: Conserved 98.2 7.4E-07 1.6E-11 93.5 3.7 65 99-163 92-169 (238)
324 cd01342 Translation_Factor_II_ 98.2 6.6E-06 1.4E-10 70.3 8.6 77 377-465 2-78 (83)
325 PTZ00258 GTP-binding protein; 98.2 5E-06 1.1E-10 92.6 9.8 102 15-132 17-126 (390)
326 COG5192 BMS1 GTP-binding prote 98.2 3.4E-06 7.3E-11 93.4 8.2 107 19-163 69-176 (1077)
327 cd01900 YchF YchF subfamily. 98.1 5.7E-06 1.2E-10 88.2 7.9 96 22-133 1-104 (274)
328 PTZ00099 rab6; Provisional 98.1 8.5E-06 1.8E-10 81.7 8.7 68 96-163 27-98 (176)
329 TIGR00073 hypB hydrogenase acc 98.1 1E-05 2.2E-10 83.4 9.4 136 17-163 20-161 (207)
330 KOG1954 Endocytosis/signaling 98.1 2.9E-05 6.2E-10 82.8 12.3 161 19-188 58-243 (532)
331 PRK09601 GTP-binding protein Y 98.1 1.2E-05 2.6E-10 88.6 10.0 97 21-133 4-108 (364)
332 KOG3883 Ras family small GTPas 98.1 2.7E-05 5.8E-10 73.0 10.7 117 18-163 8-131 (198)
333 KOG4252 GTP-binding protein [S 98.1 2.8E-06 6.2E-11 81.4 4.3 117 17-163 18-137 (246)
334 PRK14722 flhF flagellar biosyn 98.1 9.2E-06 2E-10 90.0 8.3 135 19-163 137-294 (374)
335 KOG2486 Predicted GTPase [Gene 98.0 1.4E-05 3.1E-10 82.5 8.6 113 19-163 136-261 (320)
336 TIGR00750 lao LAO/AO transport 98.0 2.1E-05 4.5E-10 85.8 9.5 61 96-163 125-185 (300)
337 TIGR00993 3a0901s04IAP86 chlor 98.0 0.0001 2.3E-09 85.4 15.0 114 19-163 118-249 (763)
338 KOG0097 GTPase Rab14, small G 98.0 4.7E-05 1E-09 70.1 9.5 115 19-163 11-129 (215)
339 COG5019 CDC3 Septin family pro 97.9 0.00012 2.5E-09 79.1 13.6 126 17-163 21-175 (373)
340 cd01899 Ygr210 Ygr210 subfamil 97.9 3E-05 6.6E-10 84.7 8.8 37 97-133 68-111 (318)
341 PRK09602 translation-associate 97.9 3.7E-05 8E-10 86.6 9.5 97 21-133 3-114 (396)
342 cd03698 eRF3_II_like eRF3_II_l 97.9 0.00012 2.5E-09 63.7 10.1 79 375-468 1-82 (83)
343 cd03114 ArgK-like The function 97.8 6.8E-05 1.5E-09 72.9 8.9 59 96-161 90-148 (148)
344 cd03693 EF1_alpha_II EF1_alpha 97.8 0.00014 2.9E-09 64.5 9.8 85 373-471 2-89 (91)
345 cd03110 Fer4_NifH_child This p 97.8 0.00032 6.9E-09 70.4 13.8 66 96-163 91-156 (179)
346 cd03115 SRP The signal recogni 97.8 0.00011 2.4E-09 73.3 10.1 66 96-163 81-152 (173)
347 KOG2655 Septin family protein 97.8 0.0004 8.6E-09 75.8 14.5 123 19-163 21-171 (366)
348 KOG1547 Septin CDC10 and relat 97.8 0.0007 1.5E-08 68.5 14.8 125 17-163 44-197 (336)
349 PF03193 DUF258: Protein of un 97.8 1.4E-05 3.1E-10 77.9 2.8 24 20-43 36-59 (161)
350 KOG0081 GTPase Rab27, small G 97.7 5.6E-05 1.2E-09 71.3 5.7 67 97-163 66-137 (219)
351 KOG0083 GTPase Rab26/Rab37, sm 97.7 1.5E-05 3.2E-10 72.7 1.9 70 94-163 43-116 (192)
352 cd01858 NGP_1 NGP-1. Autoanti 97.7 5.6E-05 1.2E-09 74.2 5.9 28 19-46 102-129 (157)
353 PF03308 ArgK: ArgK protein; 97.7 7.9E-05 1.7E-09 77.4 7.1 147 8-163 18-180 (266)
354 KOG0072 GTP-binding ADP-ribosy 97.7 8.7E-05 1.9E-09 69.1 6.3 118 10-163 10-132 (182)
355 PF00448 SRP54: SRP54-type pro 97.7 0.00012 2.5E-09 74.7 7.9 139 20-163 2-153 (196)
356 TIGR01425 SRP54_euk signal rec 97.7 0.00024 5.2E-09 80.1 11.0 66 96-163 181-252 (429)
357 cd03112 CobW_like The function 97.6 0.00027 5.8E-09 69.5 9.8 137 21-162 2-158 (158)
358 PRK10416 signal recognition pa 97.6 0.00041 8.9E-09 76.0 12.1 131 19-163 114-272 (318)
359 KOG0091 GTPase Rab39, small G 97.6 0.00015 3.3E-09 68.8 7.2 110 20-163 9-129 (213)
360 TIGR00064 ftsY signal recognit 97.6 0.00031 6.7E-09 75.3 10.5 133 18-163 71-230 (272)
361 cd04178 Nucleostemin_like Nucl 97.6 0.00011 2.5E-09 73.1 6.5 25 20-44 118-142 (172)
362 PRK11889 flhF flagellar biosyn 97.5 0.00022 4.7E-09 78.8 8.3 135 19-163 241-390 (436)
363 KOG1707 Predicted Ras related/ 97.5 0.00026 5.7E-09 80.2 9.1 111 21-163 11-128 (625)
364 KOG3886 GTP-binding protein [S 97.5 0.00022 4.8E-09 71.8 7.6 115 19-163 4-129 (295)
365 KOG0096 GTPase Ran/TC4/GSP1 (n 97.5 0.00025 5.5E-09 69.3 7.5 116 18-163 9-127 (216)
366 KOG1490 GTP-binding protein CR 97.5 0.00038 8.2E-09 77.4 9.3 114 17-163 166-294 (620)
367 PRK00771 signal recognition pa 97.5 0.00036 7.8E-09 79.4 9.2 61 98-163 176-245 (437)
368 cd01849 YlqF_related_GTPase Yl 97.4 0.0002 4.4E-09 70.0 5.9 27 18-44 99-125 (155)
369 cd01851 GBP Guanylate-binding 97.4 0.00046 9.9E-09 72.0 8.4 91 17-133 5-103 (224)
370 cd04089 eRF3_II eRF3_II: domai 97.4 0.0014 3E-08 56.8 10.1 65 375-455 1-65 (82)
371 cd02036 MinD Bacterial cell di 97.4 0.0018 3.8E-08 64.6 12.0 63 99-163 64-127 (179)
372 TIGR00101 ureG urease accessor 97.4 0.00034 7.4E-09 71.5 6.9 58 97-163 91-150 (199)
373 PRK12727 flagellar biosynthesi 97.4 0.00087 1.9E-08 76.9 10.6 138 18-163 349-497 (559)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00027 5.8E-09 68.1 5.6 23 20-42 84-106 (141)
375 cd01855 YqeH YqeH. YqeH is an 97.3 0.00028 6.2E-09 71.5 5.8 24 20-43 128-151 (190)
376 TIGR03597 GTPase_YqeH ribosome 97.3 0.00029 6.3E-09 78.8 6.3 115 19-163 154-279 (360)
377 KOG0393 Ras-related small GTPa 97.3 0.0002 4.4E-09 71.8 4.5 114 20-163 5-122 (198)
378 PRK10867 signal recognition pa 97.3 0.00087 1.9E-08 76.1 10.0 63 96-163 182-253 (433)
379 TIGR00959 ffh signal recogniti 97.3 0.00072 1.6E-08 76.8 9.1 63 96-163 181-252 (428)
380 PRK12726 flagellar biosynthesi 97.3 0.00049 1.1E-08 75.9 7.4 25 18-42 205-229 (407)
381 PRK14974 cell division protein 97.3 0.00097 2.1E-08 73.4 9.5 62 97-163 222-292 (336)
382 PRK12288 GTPase RsgA; Reviewed 97.3 0.0003 6.6E-09 77.9 5.2 24 21-44 207-230 (347)
383 cd01859 MJ1464 MJ1464. This f 97.2 0.0007 1.5E-08 66.2 6.9 31 11-41 93-123 (156)
384 KOG0448 Mitofusin 1 GTPase, in 97.2 0.0042 9E-08 71.9 13.5 145 8-163 97-274 (749)
385 TIGR00157 ribosome small subun 97.2 0.00062 1.3E-08 72.0 6.3 24 20-43 121-144 (245)
386 KOG0410 Predicted GTP binding 97.2 0.00096 2.1E-08 70.6 7.5 114 19-163 178-307 (410)
387 cd01857 HSR1_MMR1 HSR1/MMR1. 97.1 0.0013 2.7E-08 63.3 7.7 51 113-163 3-55 (141)
388 PRK12289 GTPase RsgA; Reviewed 97.1 0.00048 1E-08 76.4 5.3 24 21-44 174-197 (352)
389 COG1703 ArgK Putative periplas 97.1 0.0023 4.9E-08 67.6 9.6 75 94-183 140-216 (323)
390 cd02038 FleN-like FleN is a me 97.1 0.0041 9E-08 59.7 10.9 79 98-183 45-125 (139)
391 COG0523 Putative GTPases (G3E 97.1 0.003 6.5E-08 69.1 11.0 156 20-187 2-175 (323)
392 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.00079 1.7E-08 72.9 6.6 24 20-43 162-185 (287)
393 PRK13849 putative crown gall t 97.1 0.0017 3.7E-08 68.0 8.5 64 96-161 82-151 (231)
394 COG0012 Predicted GTPase, prob 97.1 0.0014 3.1E-08 71.4 8.0 98 20-133 3-109 (372)
395 TIGR03596 GTPase_YlqF ribosome 97.1 0.00079 1.7E-08 72.6 6.1 24 19-42 118-141 (276)
396 PRK09563 rbgA GTPase YlqF; Rev 97.1 0.00083 1.8E-08 72.8 6.1 25 19-43 121-145 (287)
397 COG1162 Predicted GTPases [Gen 97.1 0.00084 1.8E-08 71.6 5.8 22 20-41 165-186 (301)
398 TIGR00092 GTP-binding protein 97.0 0.0023 5E-08 70.8 9.3 98 20-133 3-109 (368)
399 COG1161 Predicted GTPases [Gen 97.0 0.001 2.2E-08 73.2 6.6 33 20-52 133-165 (322)
400 cd03694 GTPBP_II Domain II of 97.0 0.0043 9.4E-08 54.4 9.3 76 380-465 5-82 (87)
401 PRK12724 flagellar biosynthesi 97.0 0.00099 2.2E-08 74.6 6.2 65 96-163 298-372 (432)
402 PRK10463 hydrogenase nickel in 97.0 0.0023 5.1E-08 68.5 8.7 26 17-42 102-127 (290)
403 PRK13796 GTPase YqeH; Provisio 97.0 0.0012 2.5E-08 74.1 6.6 38 6-43 147-184 (365)
404 cd01856 YlqF YlqF. Proteins o 97.0 0.0012 2.5E-08 65.8 6.0 24 19-42 115-138 (171)
405 KOG1673 Ras GTPases [General f 97.0 0.0028 6.1E-08 59.9 7.9 115 20-164 21-138 (205)
406 cd03697 EFTU_II EFTU_II: Elong 97.0 0.0038 8.3E-08 54.7 8.3 78 380-469 5-85 (87)
407 PRK14721 flhF flagellar biosyn 96.9 0.0017 3.6E-08 73.4 7.3 24 19-42 191-214 (420)
408 KOG1486 GTP-binding protein DR 96.9 0.0012 2.7E-08 67.2 5.5 83 20-134 63-152 (364)
409 COG3640 CooC CO dehydrogenase 96.9 0.0025 5.3E-08 65.1 7.2 66 95-163 131-198 (255)
410 cd03111 CpaE_like This protein 96.8 0.0072 1.6E-07 55.1 9.3 59 99-159 44-106 (106)
411 cd03696 selB_II selB_II: this 96.8 0.0076 1.7E-07 52.3 9.1 64 378-455 3-66 (83)
412 PRK06731 flhF flagellar biosyn 96.8 0.0039 8.5E-08 66.5 8.7 136 19-163 75-224 (270)
413 PRK05703 flhF flagellar biosyn 96.8 0.0039 8.5E-08 71.1 8.9 131 19-163 221-370 (424)
414 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0015 3.3E-08 64.0 4.8 49 115-163 2-52 (157)
415 cd02037 MRP-like MRP (Multiple 96.8 0.0059 1.3E-07 60.6 8.9 66 96-163 66-134 (169)
416 PRK06995 flhF flagellar biosyn 96.7 0.0051 1.1E-07 70.7 9.1 24 19-42 256-279 (484)
417 COG0541 Ffh Signal recognition 96.7 0.0044 9.5E-08 68.8 7.7 153 6-163 79-252 (451)
418 PRK12723 flagellar biosynthesi 96.7 0.0096 2.1E-07 66.9 10.5 133 19-163 174-325 (388)
419 cd02042 ParA ParA and ParB of 96.6 0.012 2.6E-07 53.1 9.2 81 22-144 2-84 (104)
420 cd01859 MJ1464 MJ1464. This f 96.6 0.0033 7.2E-08 61.4 5.7 50 114-163 5-54 (156)
421 PRK00098 GTPase RsgA; Reviewed 96.6 0.0029 6.3E-08 69.0 5.5 23 20-42 165-187 (298)
422 PRK08099 bifunctional DNA-bind 96.6 0.0083 1.8E-07 67.9 9.2 30 17-46 217-246 (399)
423 PF02492 cobW: CobW/HypB/UreG, 96.5 0.0032 6.9E-08 63.2 5.3 82 97-187 84-172 (178)
424 KOG1491 Predicted GTP-binding 96.5 0.0077 1.7E-07 64.5 8.2 106 12-133 13-126 (391)
425 cd00066 G-alpha G protein alph 96.5 0.0073 1.6E-07 66.4 8.1 68 96-163 159-241 (317)
426 cd03695 CysN_NodQ_II CysN_NodQ 96.4 0.018 3.9E-07 49.7 8.6 50 393-455 17-66 (81)
427 COG1419 FlhF Flagellar GTP-bin 96.4 0.0075 1.6E-07 66.8 7.7 132 18-163 202-351 (407)
428 KOG0447 Dynamin-like GTP bindi 96.4 0.031 6.6E-07 62.9 12.2 147 17-183 306-507 (980)
429 TIGR02475 CobW cobalamin biosy 96.4 0.024 5.2E-07 62.9 11.6 25 18-42 3-27 (341)
430 PRK14723 flhF flagellar biosyn 96.4 0.005 1.1E-07 74.0 6.5 24 19-42 185-208 (767)
431 TIGR00257 IMPACT_YIGZ uncharac 96.3 0.026 5.7E-07 57.4 10.3 112 679-796 89-200 (204)
432 smart00275 G_alpha G protein a 96.3 0.013 2.8E-07 65.1 8.7 67 97-163 183-264 (342)
433 TIGR03596 GTPase_YlqF ribosome 96.3 0.0046 1E-07 66.7 5.0 56 106-163 5-61 (276)
434 KOG1534 Putative transcription 96.3 0.0029 6.2E-08 63.2 2.9 67 97-163 97-177 (273)
435 cd01856 YlqF YlqF. Proteins o 96.2 0.0047 1E-07 61.5 4.4 56 106-163 3-59 (171)
436 cd03688 eIF2_gamma_II eIF2_gam 96.2 0.028 6.1E-07 50.8 8.4 89 372-465 2-102 (113)
437 PRK11537 putative GTP-binding 96.2 0.023 4.9E-07 62.4 9.6 153 18-186 3-177 (318)
438 PRK11568 hypothetical protein; 96.1 0.039 8.4E-07 56.2 10.4 112 679-796 89-200 (204)
439 KOG2743 Cobalamin synthesis pr 96.0 0.046 9.9E-07 57.6 10.1 155 17-190 55-244 (391)
440 cd01849 YlqF_related_GTPase Yl 96.0 0.014 3.1E-07 56.9 6.3 41 123-163 1-42 (155)
441 TIGR03348 VI_IcmF type VI secr 96.0 0.014 3E-07 75.1 7.8 44 120-163 200-256 (1169)
442 PRK13695 putative NTPase; Prov 95.9 0.015 3.3E-07 58.0 6.5 39 120-160 95-136 (174)
443 TIGR03371 cellulose_yhjQ cellu 95.9 0.082 1.8E-06 55.7 12.4 64 98-163 115-181 (246)
444 cd03692 mtIF2_IVc mtIF2_IVc: t 95.8 0.061 1.3E-06 46.8 8.8 57 388-455 13-69 (84)
445 KOG2485 Conserved ATP/GTP bind 95.8 0.02 4.4E-07 60.8 6.7 64 18-108 142-206 (335)
446 PRK10818 cell division inhibit 95.6 0.043 9.3E-07 58.9 8.9 66 96-163 112-186 (270)
447 PRK09563 rbgA GTPase YlqF; Rev 95.6 0.01 2.3E-07 64.3 4.1 57 105-163 7-64 (287)
448 KOG2423 Nucleolar GTPase [Gene 95.5 0.012 2.6E-07 63.9 3.8 36 18-53 306-341 (572)
449 cd02032 Bchl_like This family 95.5 0.067 1.5E-06 57.3 9.6 65 97-162 115-184 (267)
450 cd04178 Nucleostemin_like Nucl 95.5 0.031 6.7E-07 55.7 6.4 41 123-163 1-43 (172)
451 COG1618 Predicted nucleotide k 95.3 0.25 5.3E-06 48.0 11.6 130 20-163 6-143 (179)
452 cd01855 YqeH YqeH. YqeH is an 95.3 0.018 3.9E-07 58.3 4.4 56 106-163 19-74 (190)
453 cd02117 NifH_like This family 95.3 0.043 9.3E-07 56.6 7.1 66 96-162 115-187 (212)
454 PF07015 VirC1: VirC1 protein; 95.3 0.12 2.6E-06 53.4 10.1 65 96-162 82-152 (231)
455 cd01983 Fer4_NifH The Fer4_Nif 95.2 0.14 3.1E-06 44.7 9.4 77 22-142 2-79 (99)
456 KOG3887 Predicted small GTPase 95.2 0.054 1.2E-06 55.3 7.1 113 19-163 28-148 (347)
457 PRK01889 GTPase RsgA; Reviewed 95.2 0.022 4.7E-07 63.7 4.7 26 19-44 195-220 (356)
458 PRK13185 chlL protochlorophyll 95.1 0.082 1.8E-06 56.7 9.0 65 96-161 116-185 (270)
459 KOG1424 Predicted GTP-binding 95.1 0.017 3.7E-07 65.0 3.7 34 19-52 314-347 (562)
460 PF06858 NOG1: Nucleolar GTP-b 95.0 0.062 1.3E-06 42.6 5.5 48 114-161 5-58 (58)
461 cd02040 NifH NifH gene encodes 95.0 0.088 1.9E-06 56.3 8.6 38 96-133 115-153 (270)
462 CHL00072 chlL photochlorophyll 94.6 0.11 2.3E-06 56.5 8.3 64 97-161 115-183 (290)
463 TIGR01007 eps_fam capsular exo 94.5 0.11 2.3E-06 53.3 7.5 67 96-163 126-193 (204)
464 PRK14493 putative bifunctional 94.5 0.08 1.7E-06 56.8 6.6 23 20-42 2-24 (274)
465 KOG4423 GTP-binding protein-li 94.4 0.0021 4.6E-08 62.7 -4.9 117 17-163 23-148 (229)
466 PRK05800 cobU adenosylcobinami 94.3 0.23 5E-06 49.4 9.1 139 21-193 3-155 (170)
467 TIGR01281 DPOR_bchL light-inde 94.3 0.21 4.5E-06 53.5 9.5 67 96-163 114-185 (268)
468 KOG3022 Predicted ATPase, nucl 94.2 0.26 5.7E-06 51.7 9.5 77 86-162 145-222 (300)
469 cd03702 IF2_mtIF2_II This fami 94.1 0.28 6E-06 43.7 8.2 68 378-460 3-70 (95)
470 PRK13230 nitrogenase reductase 94.0 0.091 2E-06 56.7 6.1 38 96-133 115-153 (279)
471 KOG2484 GTPase [General functi 94.0 0.048 1E-06 59.8 3.7 55 21-109 254-308 (435)
472 PF09547 Spore_IV_A: Stage IV 93.9 0.72 1.6E-05 51.6 12.6 128 20-161 18-191 (492)
473 KOG0780 Signal recognition par 93.9 0.16 3.4E-06 55.6 7.4 137 19-163 101-253 (483)
474 KOG1533 Predicted GTPase [Gene 93.9 0.066 1.4E-06 54.7 4.2 68 96-163 95-176 (290)
475 COG0552 FtsY Signal recognitio 93.8 0.12 2.7E-06 55.8 6.4 130 19-162 139-296 (340)
476 PRK13232 nifH nitrogenase redu 93.7 0.23 4.9E-06 53.4 8.3 66 96-161 115-185 (273)
477 PF13555 AAA_29: P-loop contai 93.6 0.071 1.5E-06 43.3 3.2 22 21-42 25-46 (62)
478 TIGR03597 GTPase_YqeH ribosome 93.6 0.15 3.3E-06 57.1 7.0 53 109-163 51-103 (360)
479 COG1116 TauB ABC-type nitrate/ 93.5 0.086 1.9E-06 54.8 4.4 19 21-39 31-49 (248)
480 KOG1487 GTP-binding protein DR 93.3 0.086 1.9E-06 54.5 4.0 111 20-164 60-183 (358)
481 PRK12289 GTPase RsgA; Reviewed 92.8 0.17 3.7E-06 56.3 5.7 47 117-163 85-133 (352)
482 PRK13231 nitrogenase reductase 92.7 0.9 2E-05 48.5 11.2 66 96-161 112-179 (264)
483 PF13207 AAA_17: AAA domain; P 92.7 0.12 2.6E-06 47.9 3.8 24 21-44 1-24 (121)
484 KOG3905 Dynein light intermedi 92.7 0.99 2.1E-05 48.4 10.8 23 19-41 52-74 (473)
485 cd03116 MobB Molybdenum is an 92.7 0.35 7.6E-06 47.5 7.2 23 20-42 2-24 (159)
486 PRK08118 topology modulation p 92.6 0.11 2.3E-06 51.6 3.5 25 20-44 2-26 (167)
487 KOG4181 Uncharacterized conser 92.4 1.2 2.7E-05 48.0 11.2 33 8-40 177-209 (491)
488 PF05621 TniB: Bacterial TniB 92.3 0.56 1.2E-05 50.5 8.7 36 8-43 48-85 (302)
489 COG3523 IcmF Type VI protein s 92.3 0.24 5.2E-06 62.5 6.7 65 99-163 175-269 (1188)
490 COG1136 SalX ABC-type antimicr 92.2 0.13 2.7E-06 53.3 3.6 19 21-39 33-51 (226)
491 PRK09270 nucleoside triphospha 92.1 0.19 4.1E-06 52.6 4.8 36 7-42 21-56 (229)
492 PRK01889 GTPase RsgA; Reviewed 92.0 0.34 7.4E-06 54.2 7.1 45 119-163 110-155 (356)
493 COG0563 Adk Adenylate kinase a 92.0 0.14 3E-06 51.3 3.5 26 21-46 2-27 (178)
494 TIGR00157 ribosome small subun 92.0 0.14 3.1E-06 54.1 3.7 47 117-163 32-80 (245)
495 PF03205 MobB: Molybdopterin g 91.9 0.16 3.5E-06 48.7 3.7 22 21-42 2-23 (140)
496 TIGR01969 minD_arch cell divis 91.9 0.42 9.2E-06 50.3 7.3 66 96-163 107-173 (251)
497 cd03701 IF2_IF5B_II IF2_IF5B_I 91.7 0.98 2.1E-05 40.2 8.2 72 378-465 3-74 (95)
498 cd01130 VirB11-like_ATPase Typ 91.7 0.18 3.9E-06 50.9 4.0 25 18-42 24-48 (186)
499 cd02019 NK Nucleoside/nucleoti 91.6 0.15 3.3E-06 42.4 2.7 22 21-42 1-22 (69)
500 KOG1707 Predicted Ras related/ 91.6 1.3 2.9E-05 51.1 11.0 44 120-163 494-539 (625)
No 1
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-181 Score=1422.62 Aligned_cols=840 Identities=67% Similarity=1.095 Sum_probs=819.9
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe
Q 003169 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|+.+..+++.++|.+..++||+.+++|+|||||||+++|...+|+|+...+|+.+++|++.+|++|||||+++.+++.++
T Consensus 1 Mv~Ftvd~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 1 MVAFTVDQVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred CccccHHHHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhh
Confidence 88999999999999999999999999999999999999999999999888999999999999999999999999999998
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcC
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~ 160 (843)
-....++.+..+.+++++.|||||.|||+||.+|+.+|||+.|||++|||+++|++.||+++++||..+++.+++|+|||
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~ 160 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKM 160 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehh
Confidence 77777777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHH
Q 003169 161 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
||.++||..+.+++|+.|+++++.+|.+++.|.+.+.|+..+.|.+|+|.|||+++||+||+.|||++|.++|++|..+|
T Consensus 161 DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~km 240 (842)
T KOG0469|consen 161 DRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKM 240 (842)
T ss_pred hHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCceeecC--CCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHH
Q 003169 241 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 318 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
..+|||+.|+++++++|..+. +.++.+++.|+.|+|+|||++++++.+...+.+..+|+.+++.+..++....+++|+
T Consensus 241 m~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~Ll 320 (842)
T KOG0469|consen 241 MNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALL 320 (842)
T ss_pred HHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHH
Confidence 999999999999999998876 455677899999999999999999999999999999999999999999988899999
Q ss_pred HHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003169 319 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
+.+|++|+|....||++|.-+||||..+|.+|...+|+|+.+++.+.++++||+++|+++||+|+.++.++|+|++|+||
T Consensus 321 K~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRV 400 (842)
T KOG0469|consen 321 KVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRV 400 (842)
T ss_pred HHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003169 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 478 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~~~~~~~~ 478 (843)
|||++.+|+.+++.||||.+|++++.+...|.+..+|||+..++|+.++||||+++.|+++++.+|||+++.+. ...+
T Consensus 401 FsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~--AHNm 478 (842)
T KOG0469|consen 401 FSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEA--AHNM 478 (842)
T ss_pred ecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhh--hccc
Confidence 99999999999999999999999888778899999999999999999999999999999999999999999887 8889
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCCeeEEEc
Q 003169 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
+.+.|+.+||++++||++++.|++||.++|++|++.||.+.+..+|+||++|.|.||||||||+++|+++| |+|.++.|
T Consensus 479 rvMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedh-A~iPlk~s 557 (842)
T KOG0469|consen 479 RVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDH-ACIPLKKS 557 (842)
T ss_pred eEEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcc-cCCceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEec
Q 003169 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (843)
+|.|+||||+.++++..++++++|+||++||+++||++++.+.|+.|.++++|++|.|+.+|.+.|+||.+++++|||||
T Consensus 558 dPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfg 637 (842)
T KOG0469|consen 558 DPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFG 637 (842)
T ss_pred CCeeeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003169 639 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~ 718 (843)
|+..|+|+++|.++|.+|++++++++.+|||||+++|||+++.|+||+|.|.|..+|.|.+|++++|+++++|++|++++
T Consensus 638 Pd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~ 717 (842)
T KOG0469|consen 638 PDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASV 717 (842)
T ss_pred CCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeE
Q 003169 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
+.|+|+|+||+|.|||+||+.++|.||++|++|||++.+++...|++++.|+|++|+.|||||..+|||.|.|+|.++|.
T Consensus 718 l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~v 797 (842)
T KOG0469|consen 718 LTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMV 797 (842)
T ss_pred HhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003169 799 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 843 (843)
Q Consensus 799 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
|+||+++|+||+|++|..-+++.++||||||+|.+|.+.+|.|||
T Consensus 798 FdHws~lpgdp~dp~sk~~~iV~~~RKrkglke~~P~~~~y~Dkl 842 (842)
T KOG0469|consen 798 FDHWSILPGDPLDPTSKPGQIVLATRKRKGLKEGVPDLDEYLDKL 842 (842)
T ss_pred eeccccCCCCCCCCCccchHHHHHHHHhcCCCCCCCChHHHhhcC
Confidence 999999999999999999999999999999999999999999997
No 2
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=4.3e-157 Score=1421.92 Aligned_cols=840 Identities=94% Similarity=1.439 Sum_probs=766.3
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe
Q 003169 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|..++.++|.++|+++++||||||+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+||+++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 1 MVKFTAEELRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred CCccCHHHHHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEee
Confidence 78899999999999999999999999999999999999999999998887888889999999999999999999999996
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcC
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~ 160 (843)
.....+++.....+.+++.|||||||||.||..++.+|++.+|+||+||||.+|++.||+.+|+++...++|+|+|+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~ 160 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECC
Confidence 32211211111234457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHH
Q 003169 161 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|++++|++.+++++|.+++++++++|.++..+..+..+.++|+|.++||.|+|+++||+|++.+|+.+|..+|+++.+.+
T Consensus 161 D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l 240 (843)
T PLN00116 161 DRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
T ss_pred cccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHH
Confidence 99999999999999999999999999988877655555678999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHH
Q 003169 241 MERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 320 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
.+++||++||+++++++...+.+.....+.|++++++|+|+|++++++.|+++|++||++++++++++|++...+++++.
T Consensus 241 ~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
T PLN00116 241 MERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKR 320 (843)
T ss_pred HHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHH
Confidence 99999999998877777665532334567899999999999999999999999999999988899999998788999999
Q ss_pred HHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEe
Q 003169 321 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 321 i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~s 400 (843)
++..|+|.++.|||+|++|+|||.++++.++..+|.++.+++....++.||+++|++|+|||+.++++.|++++|+||||
T Consensus 321 ~~~pv~~~s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVys 400 (843)
T PLN00116 321 VMQTWLPASDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
T ss_pred HHHhhcCChHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEe
Confidence 99999999999999999999999998888888777764344444577899999999999999999888887899999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCC--CCCcccc
Q 003169 401 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEK--EVDAHPI 478 (843)
Q Consensus 401 G~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~--~~~~~~~ 478 (843)
|+|++||.||++++|++++++++.+.+++++||.++|++.++|++|+|||||+|.|++++.++++||++.. . +.++
T Consensus 401 GtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~--~~~l 478 (843)
T PLN00116 401 GTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVD--AHPI 478 (843)
T ss_pred eeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccC--Cccc
Confidence 99999999999999887765544555799999999999999999999999999999998654444998876 4 5667
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccC-CeeEEE
Q 003169 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG-GAEIIK 557 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~-~v~v~~ 557 (843)
+++.++.+|+++++|||.+++|+++|.+||++|.+|||||+++.++|||++|+||||+|||||++||+++| + ||+|++
T Consensus 479 ~~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f-~~~vev~~ 557 (843)
T PLN00116 479 KAMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDF-MGGAEIKV 557 (843)
T ss_pred cccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHh-hCCCcEEE
Confidence 78877569999999999999999999999999999999999977799999999999999999999999999 7 899999
Q ss_pred cCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEe
Q 003169 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 637 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
|+|+|+|||||.++++..+..+.+++|++++++++|++.++.+.|+.+.+...++.+.+...+...|+|+...++++|+|
T Consensus 558 s~p~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
T PLN00116 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCF 637 (843)
T ss_pred cCCeEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeee
Confidence 99999999999998765555667889999999999999988889998877666666666666777899999999999999
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHH
Q 003169 638 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 638 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a 717 (843)
||+..|+|.|++.+.|.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++.+++|++|+++||++|
T Consensus 638 gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~A 717 (843)
T PLN00116 638 GPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYAS 717 (843)
T ss_pred cCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHH
Confidence 99877889999999999999999999999999999999999999999999999999999888888889999999999999
Q ss_pred HhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeee
Q 003169 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 797 (843)
Q Consensus 718 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||+|||+||++++|+|++||++|||+|++++..+++..++|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 718 l~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~ 797 (843)
T PLN00116 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQC 797 (843)
T ss_pred HHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEE
Confidence 99999999999999999999999999999999999999999987776779999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003169 798 VFDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 843 (843)
Q Consensus 798 ~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
+|+||++||+||||++|+|+++|.++|+||||+|++|.+.+|+|||
T Consensus 798 ~f~~y~~v~~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~d~~ 843 (843)
T PLN00116 798 VFDHWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQMPPLSEYEDKL 843 (843)
T ss_pred EeceeEECCCCCCCchhHHHHHHHHHHhhCCCCCCCCCHHHhcccC
Confidence 9999999999999999999999999999999999999999999997
No 3
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.3e-155 Score=1405.94 Aligned_cols=834 Identities=69% Similarity=1.133 Sum_probs=758.9
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe
Q 003169 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|..++.++|.++|++++++|||+|+||+|||||||+++|++.+|.+++...|..+++|+.++|++||+||+++.+++.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 1 MVNFTVDQIREIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred CCccCHHHHHHHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEee
Confidence 77899999999999999999999999999999999999999999998887888888999999999999999999999986
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcC
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~ 160 (843)
... ....+++++.|||||||||.||..++.++++.+|+||+||||++|++.||+.+|+++...++|+|+|+|||
T Consensus 81 ~~~------~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~ 154 (836)
T PTZ00416 81 HDL------EDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKV 154 (836)
T ss_pred ccc------ccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEECh
Confidence 211 11123457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHH
Q 003169 161 DRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKM 240 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l 240 (843)
|+.++|++.+|+++|.+++++++++|..+..+..+.....+|.|.++||||+|+.+||+|++++|+..|+.+|+++...+
T Consensus 155 D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l 234 (836)
T PTZ00416 155 DRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKM 234 (836)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHH
Confidence 99999999999999999999999999998766543322356899999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCceeecC--CCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHH
Q 003169 241 MERLWGENFFDPATRKWTSRN--TGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 318 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
.+++||++||+++++++...+ .......+.|++++++|+|+|++++++.|+++|++||+++|+++++++++...+.|+
T Consensus 235 ~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~ 314 (836)
T PTZ00416 235 MERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLL 314 (836)
T ss_pred HHHHhccccccCCCCEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHH
Confidence 999999999988777676554 222235788999999999999999999999999999998889999999755556899
Q ss_pred HHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003169 319 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
++++++|+|++++|||+|++|+|||.+++..+...++.++..+.....++.||+++|++|+|||+.++++.|++++|+||
T Consensus 315 ~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV 394 (836)
T PTZ00416 315 KAVMQKWLPAADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRV 394 (836)
T ss_pred HHHHHHHhchHHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEE
Confidence 99999999999999999999999999888777766665533333345678999999999999999999998888899999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCCCCCcccc
Q 003169 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVDAHPI 478 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~~~~~~~~ 478 (843)
|||+|++||.||++++|++.++++++...+|++||.++|++..+|++|+|||||+|.||++++++||||++... +.++
T Consensus 395 ~SGtL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~--~~~l 472 (836)
T PTZ00416 395 FSGTVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSET--AHNI 472 (836)
T ss_pred EeeeecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCC--cccc
Confidence 99999999999999998776654333334699999999999999999999999999999986678999988766 6777
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCCeeEEEc
Q 003169 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
.++.++++|+++++|||.+++|+++|.+||++|.+|||+|.++.++|||++|+||||+|||+|++||+++| ++|+|++|
T Consensus 473 ~~i~~~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f-~~vev~~s 551 (836)
T PTZ00416 473 RDMKYSVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDY-ANIDIIVS 551 (836)
T ss_pred cccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHh-cCcceEec
Confidence 88877669999999999999999999999999999999999977799999999999999999999999999 78999999
Q ss_pred CCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEec
Q 003169 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (843)
+|+|+|||||++.++..+.++.++++++++++++||+..+.+.++.+.+......+.+...+...|+|+...++++|+|+
T Consensus 552 ~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~ 631 (836)
T PTZ00416 552 DPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFG 631 (836)
T ss_pred CCEEEEEEEecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeecc
Confidence 99999999999998877777888889999999999999988888888766555555555556668999999999999999
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003169 639 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~ 718 (843)
|...|+|+++|.+.+.+|+++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.+...++|++|+++||++|+
T Consensus 632 ~~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~ 711 (836)
T PTZ00416 632 PENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACE 711 (836)
T ss_pred CCCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999987778888899999999999999
Q ss_pred hhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeE
Q 003169 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|||+||++++|+|++||++|||+|+++++.+++..++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 712 ~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~ 791 (836)
T PTZ00416 712 LTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCV 791 (836)
T ss_pred hhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999999877766799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchhHHHHHHHHHHhcCCCCCCCCcccccccC
Q 003169 799 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYEDKL 843 (843)
Q Consensus 799 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~~ 843 (843)
|+||++||+||||++|+|+++|+++|+||||++++|.+.+|+|||
T Consensus 792 F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~~~~~~~~~~~~~~ 836 (836)
T PTZ00416 792 FDHWQVVPGDPLEPGSKANEIVLSIRKRKGLKPEIPDLDNYLDKL 836 (836)
T ss_pred eccEEECCCCCCCchhHHHHHHHHHHHhCCCCCCCCCHHHhcccC
Confidence 999999999999999999999999999999999999999999997
No 4
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-141 Score=1153.74 Aligned_cols=824 Identities=40% Similarity=0.720 Sum_probs=766.8
Q ss_pred cccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCccccccccceeeeeeEEEEEee
Q 003169 3 KFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 3 ~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
.|+.+++..+|+.+..+|||+++||.+||||+|++.|...++.--+. .-...+++|....|++||+||++...++...
T Consensus 112 ~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~- 190 (971)
T KOG0468|consen 112 VYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLS- 190 (971)
T ss_pred hhhHHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEe-
Confidence 47889999999999999999999999999999999999888732211 1112479999999999999999999988765
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCC
Q 003169 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
..+++++.+|++|||||++|..|+.++++.+||+++|||+.+|+..+|+.+++++.+.++|+++|+||+|
T Consensus 191 ----------D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiD 260 (971)
T KOG0468|consen 191 ----------DSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVD 260 (971)
T ss_pred ----------cCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhH
Confidence 2456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcC-CCHHHH
Q 003169 162 RCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG-VDESKM 240 (843)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~-i~~~~l 240 (843)
|.++||+..|.++|.+++-+++++|..+..+..+ ...-++|+.|||+|+|+..||+||+.+||.+|...++ ++.+.+
T Consensus 261 RLilELkLPP~DAY~KLrHii~~iN~~is~~s~~--~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~F 338 (971)
T KOG0468|consen 261 RLILELKLPPMDAYYKLRHIIDEINNLISTFSKD--DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDF 338 (971)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhcchhhhcccc--cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhh
Confidence 9999999999999999999999999998877643 2245799999999999999999999999999998887 889999
Q ss_pred HHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHH
Q 003169 241 MERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKR 320 (843)
Q Consensus 241 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~ 320 (843)
..++||+.||+.+|.+|+.++.++. ..+.|++|+|+|+||++..+....++.+...|.++|+.++.++++.+.+.|++.
T Consensus 339 a~RLWGdvYf~~ktrkF~kk~~~~~-~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~l 417 (971)
T KOG0468|consen 339 AKRLWGDVYFHSKTRKFVKKPPDGS-GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRL 417 (971)
T ss_pred hhhhhccccccccccccccCCCCCc-ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHH
Confidence 9999999999999999988875443 356999999999999999999888889999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEe
Q 003169 321 VMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 321 i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~s 400 (843)
+..+|+.....+.|++++++|||.+....++...|.|+.+......+..|++++|++.++.|+++..+.-.|.+|+||||
T Consensus 418 vc~~ffg~~sgfvd~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~S 497 (971)
T KOG0468|consen 418 VCKSFFGIESGFVDMPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYS 497 (971)
T ss_pred HHHHhccchhhhhHhhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeee
Confidence 99999999999999999999999998888888888887776667788899999999999999999888778899999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCCCC-Cccccc
Q 003169 401 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEV-DAHPIR 479 (843)
Q Consensus 401 G~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~~~-~~~~~~ 479 (843)
|+++.|+.|.+++.|+.....+++....|+++++..+++..+|..|+||+++.|.|+++.+.+|.|+++.+.+ ....++
T Consensus 498 g~~~~~q~V~vlgeny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFr 577 (971)
T KOG0468|consen 498 GQVVTGQDVRVLGENYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFR 577 (971)
T ss_pred cceeecceeeEeeccccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeecc
Confidence 9999999999999999887777777889999999999999999999999999999999999999999876542 256678
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcC
Q 003169 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 480 ~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
|+.+.+.||+++++||.+|++++||.+||++.++.+|.+....+|+||++|.|-|||+|++++++||+-| +.|++++++
T Consensus 578 pl~~~t~~VvKiaveP~nPsELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~y-seieikvaD 656 (971)
T KOG0468|consen 578 PLKFNTEPVVKVAVEPLNPSELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSY-SEIEIKVAD 656 (971)
T ss_pred chhcCCcceEEEEeccCChhhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHH-hhhceeecC
Confidence 9999899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEecc
Q 003169 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 639 (843)
Q Consensus 560 p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p 639 (843)
|.|.|.||+.++++..|.++++|+.|+|+|.+|||...+.+.|++|.+......++..++++..|+||..++++||+|||
T Consensus 657 Pvv~F~Et~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgp 736 (971)
T KOG0468|consen 657 PVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGP 736 (971)
T ss_pred ceeEEEEeeecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCC
Confidence 99999999999999999999999999999999999999999999998877777888899999999999999999999999
Q ss_pred CCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHH
Q 003169 640 ETIGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIY 715 (843)
Q Consensus 640 ~~~g~n~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~ 715 (843)
+..|+|+++|++- ..+.+..++++|++||||++++||||++|+++|+|+|.|+.+.++..+++++|+++++|++|+
T Consensus 737 d~~GpNiL~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~Y 816 (971)
T KOG0468|consen 737 DYTGPNILLDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAY 816 (971)
T ss_pred CCCCCceeecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHH
Confidence 9999999999974 355778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceee
Q 003169 716 ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 795 (843)
Q Consensus 716 ~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
.||+.|.|+||||+|.|||++|.+.+..|+.+|++|||+|....+..|++.+.|+|++|+.|||||.++||..|+|+|.+
T Consensus 817 safL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C 896 (971)
T KOG0468|consen 817 SAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFC 896 (971)
T ss_pred HHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecceeecCCCCCCC------------chhHHHHHHHHHHhcCCCCCCCCccccccc
Q 003169 796 QCVFDHWDMMSSDPLEP------------GSQASQLVLDIRKRKGLKEQMTPLSEYEDK 842 (843)
Q Consensus 796 ~~~f~~y~~v~~d~~~~------------~~~~~~~~~~~r~rkGl~~~i~~~~~~~~~ 842 (843)
++.|.||++|||||+|+ +.+||+++.++||||||+|++ +..+|+|+
T Consensus 897 ~~vF~HW~~VPGDpLDKsi~i~~Lep~p~~~LaReFmiKTRRRKGlsedv-S~~kffd~ 954 (971)
T KOG0468|consen 897 LSVFDHWRIVPGDPLDKSIAIRPLEPAPIRHLAREFMIKTRRRKGLSEDV-SINKFFDD 954 (971)
T ss_pred HHhhhhcccCCCCccccccccccCCCCCcchhHHHHHHHhhhhccccccc-ccCcccch
Confidence 99999999999999995 579999999999999999994 88888884
No 5
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.9e-128 Score=1160.42 Aligned_cols=720 Identities=43% Similarity=0.709 Sum_probs=633.3
Q ss_pred cHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechh
Q 003169 5 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (843)
Q Consensus 5 ~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
..++|.++|++.+++|||+|+||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+||+++.+++.|.+
T Consensus 6 ~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--- 82 (731)
T PRK07560 6 MVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY--- 82 (731)
T ss_pred HHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe---
Confidence 47889999999999999999999999999999999999999988767778899999999999999999999998852
Q ss_pred hhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccc
Q 003169 85 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~ 164 (843)
+++++.|||||||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++.+.++|+|+|+||||+..
T Consensus 83 ---------~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 83 ---------EGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred ---------cCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 22478999999999999999999999999999999999999999999999999899999999999999998
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCCC-CCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHh
Q 003169 165 LELQVDGEEAYQTFQKVIENANVIMATYEDPLL-GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 243 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 243 (843)
.+++..++++++++.+++++++.++..+..+.. +.+.+.|..++|.|+|+.+||+|.++.+.... .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~-----~-------- 220 (731)
T PRK07560 154 KELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTG-----I-------- 220 (731)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhC-----C--------
Confidence 888999999999999999999988876643321 23457788899999999999999876432110 0
Q ss_pred hccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHH
Q 003169 244 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 323 (843)
Q Consensus 244 ~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 323 (843)
.| +++++.|+++ +.+++ .
T Consensus 221 --------------------------~~-------------------~~l~e~~~~~-----~~~~l------------~ 238 (731)
T PRK07560 221 --------------------------KF-------------------KDIIDYYEKG-----KQKEL------------A 238 (731)
T ss_pred --------------------------CH-------------------HHHHHHHhcC-----CHHHH------------H
Confidence 01 1122333211 11222 3
Q ss_pred hhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEe
Q 003169 324 TWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 403 (843)
Q Consensus 324 ~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L 403 (843)
+|+|+.++|||+|++|+|||.++++.+...++.+...++.....+.||+++|++|+|||+..+++.|. ++|+|||||+|
T Consensus 239 ~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~-va~~RV~sGtL 317 (731)
T PRK07560 239 EKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGE-VATGRVFSGTL 317 (731)
T ss_pred hhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCe-EEEEEEEEeEE
Confidence 57999999999999999999998887777777654333333456789999999999999999998886 99999999999
Q ss_pred cCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccc
Q 003169 404 ATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMK 482 (843)
Q Consensus 404 ~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~ 482 (843)
++||.|++.++ +.+ +++++|+.++|++.+++++++|||||++.|+++. .+| ||++... ..+++++.
T Consensus 318 ~~Gd~v~~~~~----~~~-----~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~--~~GdtL~~~~~--~~~~~~~~ 384 (731)
T PRK07560 318 RKGQEVYLVGA----KKK-----NRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDA--RAGETVVSVED--MTPFESLK 384 (731)
T ss_pred cCCCEEEEcCC----CCc-----eEeheehhhhcCCCceeeeECCCCEEEEEccccc--ccCCEEeCCCc--cccccccc
Confidence 99999997643 222 7999999999999999999999999999999887 577 9988765 66777775
Q ss_pred cCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCe
Q 003169 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 561 (843)
Q Consensus 483 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 561 (843)
+.++|+++++|+|.++.|.++|.+||++|.+|||+|+|+.+ +|||++|+||||+|||++++||+++| ++++++++|+
T Consensus 385 ~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~--~vev~~~~p~ 462 (731)
T PRK07560 385 HISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDY--GIEVVTSEPI 462 (731)
T ss_pred cCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHh--CCceEecCCE
Confidence 44599999999999999999999999999999999999998 89999999999999999999999999 9999999999
Q ss_pred EeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhh---hcCCcccccceEEEec
Q 003169 562 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSE---EFGWDKDLAKKIWCFG 638 (843)
Q Consensus 562 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~~ 638 (843)
|+|||||.+++.. +..+++++|++++++++|++.+..+.++.|.....++.+.+ .+|.. ++||+...++++|+|+
T Consensus 463 V~yrETI~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~~~i~~~~ 540 (731)
T PRK07560 463 VVYRETVRGKSQV-VEGKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEA-KILREKLIEAGMDKDEAKRVWAIY 540 (731)
T ss_pred EEEEEecccCccc-eEEECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHH-HHHHHhhhhcCCchhhhhceeecc
Confidence 9999999988631 23356788999999999999988888888876544444444 55554 8999999999999993
Q ss_pred cCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHH
Q 003169 639 PETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 639 p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~ 718 (843)
++|.|+|.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.|+.++..+||++|+++||++|+
T Consensus 541 ----~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~ 616 (731)
T PRK07560 541 ----NGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAM 616 (731)
T ss_pred ----CCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred hhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeE
Q 003169 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCV 798 (843)
Q Consensus 719 ~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 798 (843)
++|+|+||||||+|||+||++++|+|++||++|||+|++++..+ +.++|+|++|++|||||+++|||+|+|+|+|+|+
T Consensus 617 ~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 694 (731)
T PRK07560 617 LTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEG--DMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTE 694 (731)
T ss_pred HhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCC--CcEEEEEEEehHHhcCCchHHHhhCcCCceEEEE
Confidence 99999999999999999999999999999999999999987643 5799999999999999999999999999999999
Q ss_pred ecceeecCCCCCCCchhHHHHHHHHHHhcCCCCCCCCcccccc
Q 003169 799 FDHWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQMTPLSEYED 841 (843)
Q Consensus 799 f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~i~~~~~~~~ 841 (843)
|+||++||++ +++++++++|+||||+++||.+++|+|
T Consensus 695 f~~y~~v~~~------~~~~ii~~~r~rKGl~~~~~~~~~~~~ 731 (731)
T PRK07560 695 FAGFEPVPDS------LQLDIVRQIRERKGLKPELPKPEDFLS 731 (731)
T ss_pred eccceeCCHH------HHHHHHHHHHhhCCCCCCCCChhhhcC
Confidence 9999999975 699999999999999999999999986
No 6
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-127 Score=1116.91 Aligned_cols=666 Identities=36% Similarity=0.548 Sum_probs=563.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE----eecCccccccccceeeeeeEEEEEeechhhhhcccc
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR----MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~----~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.+++|||+|+||+|||||||+++||+++|.+++ +|+++ +||++++|++|||||+++++++.|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k--~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~----------- 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK--IGEVHDGAATMDWMEQEQERGITITSAATTLFWK----------- 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC--CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----------
Confidence 678999999999999999999999999999999 78776 9999999999999999999999996
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCH
Q 003169 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~ 171 (843)
.+++|||||||||+||..|+.+++|++||||+|+||++|+++||+++|+||.++++|+++|+|||||. +++
T Consensus 74 ----~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~----~a~- 144 (697)
T COG0480 74 ----GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL----GAD- 144 (697)
T ss_pred ----CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc----ccC-
Confidence 14999999999999999999999999999999999999999999999999999999999999999999 655
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003169 172 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
+...++++...+.. .|...|+++++. +.|| +|+..+..+.|++
T Consensus 145 ------~~~~~~~l~~~l~~-----------~~~~v~~pIg~~~~f~g~----------------idl~~~~~~~~~~-- 189 (697)
T COG0480 145 ------FYLVVEQLKERLGA-----------NPVPVQLPIGAEEEFEGV----------------IDLVEMKAVAFGD-- 189 (697)
T ss_pred ------hhhhHHHHHHHhCC-----------CceeeeccccCccccCce----------------eEhhhcCeEEEcC--
Confidence 22333333333321 223335666652 3333 4455556666763
Q ss_pred cCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003169 250 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
...-.|...| ....+...+.+.++++++++.|++++++||++ .+++.+++. ++|++.++ ..++|+
T Consensus 190 --~~~~~~~~ip-------~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g--~e~~~~~i~---~~i~~~~~~~~~~pv 255 (697)
T COG0480 190 --GAKYEWIEIP-------ADLKEIAEEAREKLLEALAEFDEELMEKYLEG--EEPTEEEIK---KALRKGTIAGKIVPV 255 (697)
T ss_pred --CcccceeeCC-------HHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcC--CCccHHHHH---HHHHHhhhccceeeE
Confidence 1111232222 11222233456788999999999999999988 678888887 55666554 456664
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccc-cccccCCCCeEEEEEEeeecCCCCceeEEEE
Q 003169 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANA-IRNCDPEGPLMLYVSKMIPASDKGRFFAFGR 397 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~R 397 (843)
+++|||+|++|||||.+.+.. .|...++.... ...+++++|++|+|||+..+++.|. ++|+|
T Consensus 256 l~gsa~kn~gv~~lLdav~~~lPsP~e~~~~------~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~-l~~~R 328 (697)
T COG0480 256 LCGSAFKNKGVQPLLDAVVDYLPSPLDVPPI------KGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK-LTFVR 328 (697)
T ss_pred EeeecccCCcHHHHHHHHHHHCCChhhcccc------cccCCccccchhcccCCCCCceEEEEEEeEecCCCCe-EEEEE
Confidence 899999999999999998743 23222221111 2244668999999999999999887 99999
Q ss_pred EEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcc
Q 003169 398 VFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAH 476 (843)
Q Consensus 398 V~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~ 476 (843)
||||+|++|+.+++.+ .+++ +||++|+.|+|.+++++++++||||+++.||+++ .|| |||+... +.
T Consensus 329 vysGtl~~G~~v~n~~----~~~~-----erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~--~tGdTl~~~~~--~v 395 (697)
T COG0480 329 VYSGTLKSGSEVLNST----KGKK-----ERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA--TTGDTLCDENK--PV 395 (697)
T ss_pred EeccEEcCCCEEEeCC----CCcc-----EEEEEEEEccCCceeecccccCccEEEEEccccc--ccCCeeecCCC--cc
Confidence 9999999999999643 3333 8999999999999999999999999999999997 688 9998775 77
Q ss_pred cccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeE
Q 003169 477 PIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEI 555 (843)
Q Consensus 477 ~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v 555 (843)
.+..+.++ +||++++|||++++|++||.+||++|++|||+++++.| ||||++|+|||||||||+++||+++| ||++
T Consensus 396 ~~~~~~~p-ePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~--~Vev 472 (697)
T COG0480 396 ILESMEFP-EPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREF--GVEV 472 (697)
T ss_pred ccccccCC-CceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhc--CceE
Confidence 88999998 99999999999999999999999999999999999997 99999999999999999999999999 9999
Q ss_pred EEcCCeEeeEeccccccceeee----eecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCccccc
Q 003169 556 IKSDPVVSFRETVLEKSCRTVM----SKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLA 631 (843)
Q Consensus 556 ~~~~p~V~yrETi~~~~~~~~~----~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 631 (843)
++++|+|+|||||.+.+..... ++++++|+++++++||++
T Consensus 473 ~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~------------------------------------ 516 (697)
T COG0480 473 EVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLE------------------------------------ 516 (697)
T ss_pred EecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCC------------------------------------
Confidence 9999999999999988753221 234555666666666653
Q ss_pred ceEEEeccCCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHH
Q 003169 632 KKIWCFGPETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTA 710 (843)
Q Consensus 632 ~~i~~~~p~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~ 710 (843)
.| .+.|.+.+.|+..+.++.+++.+||++|+++|||+||||+|++|+|+|+++|.+. +...+|..|+
T Consensus 517 ----------~~~~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vd--ss~~af~~a~ 584 (697)
T COG0480 517 ----------DGSGFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVD--SSEMAFKIAA 584 (697)
T ss_pred ----------CCcceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCC--CCHHHHHHHH
Confidence 22 4778888888888999999999999999999999999999999999999999732 3345788999
Q ss_pred HHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCC
Q 003169 711 RRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATS 790 (843)
Q Consensus 711 ~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~ 790 (843)
++||++|+.+|+|+||||||+|||++|++++|+|+++|++|||+|++++...++.+++|+|++|++|||||+++|||+|+
T Consensus 585 ~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~ 664 (697)
T COG0480 585 SLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQ 664 (697)
T ss_pred HHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999866678999999999999999999999999
Q ss_pred CceeeeeEecceeecCCCCCCCchhHHHHHHHHHHhcCC
Q 003169 791 GQAFPQCVFDHWDMMSSDPLEPGSQASQLVLDIRKRKGL 829 (843)
Q Consensus 791 G~~~~~~~f~~y~~v~~d~~~~~~~~~~~~~~~r~rkGl 829 (843)
|+|+|+|+|+||+++|.+ ++++++.+.|+|||+
T Consensus 665 Gra~~~m~f~~y~~vp~~------~a~~ii~~~~~~~~~ 697 (697)
T COG0480 665 GRASFSMEFDHYEEVPSS------VAEEIIAKRRKRKGL 697 (697)
T ss_pred CceeEEEEecccEeCCHH------HHHHHHHHhhhhcCC
Confidence 999999999999999965 699999999999986
No 7
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-128 Score=1067.24 Aligned_cols=802 Identities=37% Similarity=0.665 Sum_probs=681.2
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
+..+.+|||++++|+|||||||+++|+..+|+|++..+|+.+++|++++|+.||||++++.+++...
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~------------- 70 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHK------------- 70 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccC-------------
Confidence 4568899999999999999999999999999999999999999999999999999999999997765
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~ 173 (843)
++.+||||+|||+||.+|+.+|.+.+|+|+++||+++|++.||..++||++..+..+|+|+|||||.+.|+.+.|.|
T Consensus 71 ---~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~e 147 (887)
T KOG0467|consen 71 ---DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQE 147 (887)
T ss_pred ---ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCC-----------CCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHH
Q 003169 174 AYQTFQKVIENANVIMATYEDPL-----------LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMME 242 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~ 242 (843)
+|+++-++++++|.++.+|.... ...++|.|.++||.|.++.+||+|.+++|+++|..+.+.+...+.+
T Consensus 148 a~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k 227 (887)
T KOG0467|consen 148 AYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLK 227 (887)
T ss_pred HHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhh
Confidence 99999999999999998652110 0136899999999999999999999999999999999999999999
Q ss_pred hhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHH-HhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHH
Q 003169 243 RLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINI-CMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRV 321 (843)
Q Consensus 243 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~-~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i 321 (843)
.+||++|++++++++..... .+..+++|.+++|+|+|++|+. +.+.|.+.+++....+|+.+-+++++ .++.++
T Consensus 228 ~lwgd~y~~~ktk~I~~~~~-~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~----~ll~~i 302 (887)
T KOG0467|consen 228 FLWGDRYIDPKTKRICEGKK-LKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLR----NLLDAI 302 (887)
T ss_pred hhccceeecchhhhhhcccC-cccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHH----HHHHHH
Confidence 99999999998876655431 2234899999999999999995 55668899999999999999888885 788999
Q ss_pred HHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCC---CcccccccccccCCCCeEEEEEEeeecCCCC----ceeE
Q 003169 322 MQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPL---DDAYANAIRNCDPEGPLMLYVSKMIPASDKG----RFFA 394 (843)
Q Consensus 322 ~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g----~~l~ 394 (843)
|++|+|+.+..+-+++..+|+|.+.+..+...+...+. +.+...+++.|++++|.++||+|+...+.+. ++++
T Consensus 303 m~~wLPls~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~ 382 (887)
T KOG0467|consen 303 MSTWLPLSDAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLA 382 (887)
T ss_pred HHhhcccccchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhhee
Confidence 99999999999999999999999999988877765311 1223445677899999999999998755433 2589
Q ss_pred EEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccceeeecCCCCC
Q 003169 395 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNATLTNEKEVD 474 (843)
Q Consensus 395 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tgTL~~~~~~~ 474 (843)
|+||||||++.|+.+|+.++ ++...+.+.+.+|.++|+++|++.++.+++++|++++|.| .....+++|||+...
T Consensus 383 ~ari~sgTlr~g~~v~v~~p--d~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g-~~~vlks~TL~s~~~-- 457 (887)
T KOG0467|consen 383 FARIFSGTLRVGQVVYVLGP--DPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGG-AGIVLKSATLCSKVP-- 457 (887)
T ss_pred eeeeccCceeeccEeeecCC--CCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecc-cceEeccceecccCC--
Confidence 99999999999999999887 3333344567899999999999999999999999999999 677678889999855
Q ss_pred cccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccCCee
Q 003169 475 AHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAE 554 (843)
Q Consensus 475 ~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~~v~ 554 (843)
+.++....+...|.++++|+|.++.++++|.++|+.|.+.||++++..+++||+++.+.||+|||.|+.+|++ | ++++
T Consensus 458 ~~p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~e-f-a~i~ 535 (887)
T KOG0467|consen 458 CGPNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKE-F-AKIE 535 (887)
T ss_pred CcceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhh-h-hceE
Confidence 5555556677799999999999999999999999999999999999999999999999999999999999999 8 8999
Q ss_pred EEEcCCeEeeEecccccccee-------eeeecCCceeEEEEEEEeCchhhhhHHhcCCCC------------CCCCh--
Q 003169 555 IIKSDPVVSFRETVLEKSCRT-------VMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIG------------PRDDP-- 613 (843)
Q Consensus 555 v~~~~p~V~yrETi~~~~~~~-------~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~------------~~~~~-- 613 (843)
+++++|.|+||||+.+.+... .....+.+.-++.+++.|+...+.+.+..+... +.+++
T Consensus 536 i~vSeP~vpfrET~~e~s~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k 615 (887)
T KOG0467|consen 536 ISVSEPLVPFRETIIEDSDLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQK 615 (887)
T ss_pred EEecCCccchhhhccccchhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhcccccccccccccc
Confidence 999999999999996544211 000111222356677777764443322111100 00000
Q ss_pred ---hh---HHHhhhhhcCCc------ccccceEEEeccCCCCCceEEecccCc--------cchHHHHHHHHHHHHHHHH
Q 003169 614 ---KV---RSKILSEEFGWD------KDLAKKIWCFGPETIGPNMVVDMCKGV--------QYLNEIKDSVVAGFQWASK 673 (843)
Q Consensus 614 ---~~---~~~~l~~~~~~~------~~~~~~i~~~~p~~~g~n~~~~~~~g~--------~~~~~~~~~i~~G~~~a~~ 673 (843)
.. ....+...+... ..+..++|+|||.+.|+|+|.+..... .+...+-+++..|||.++.
T Consensus 616 ~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~ 695 (887)
T KOG0467|consen 616 GSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATS 695 (887)
T ss_pred ccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhc
Confidence 00 011111111110 112356889999999999998865322 2223366899999999999
Q ss_pred cCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhcc
Q 003169 674 EGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKR 752 (843)
Q Consensus 674 ~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rr 752 (843)
.||||.|||+|++|.+..+.... ++...-.||+++|++.+|++|++...|||+.|||.|+|++..+++|++|.+|++|+
T Consensus 696 sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~ 775 (887)
T KOG0467|consen 696 SGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRH 775 (887)
T ss_pred cCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhc
Confidence 99999999999999999854433 22122237999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecCCCCCCC----------------chhH
Q 003169 753 GHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEP----------------GSQA 816 (843)
Q Consensus 753 g~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d~~~~----------------~~~~ 816 (843)
|+|++++..+||+.|.|+|.+|+.|+|||+.+||..|+|.|++++.|+||+.++.||||. .|.|
T Consensus 776 gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DPFWvPtTEEEleefGekADs~N~A 855 (887)
T KOG0467|consen 776 GKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDPFWVPTTEEELEEFGEKADSENIA 855 (887)
T ss_pred chhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCCccCCCcHHHHHHhhhcccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999983 5899
Q ss_pred HHHHHHHHHhcCC--CCCCCCcccccccC
Q 003169 817 SQLVLDIRKRKGL--KEQMTPLSEYEDKL 843 (843)
Q Consensus 817 ~~~~~~~r~rkGl--~~~i~~~~~~~~~~ 843 (843)
+++|+.+|||||| +|+|++++++|++|
T Consensus 856 rkYMdaVRRRKGLfVEEkIVE~AEKQRTL 884 (887)
T KOG0467|consen 856 RKYMDAVRRRKGLFVEEKIVEHAEKQRTL 884 (887)
T ss_pred HHHHHHHHhhcCCchHHHHhhhHHhhccc
Confidence 9999999999999 99999999999987
No 8
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-125 Score=1029.18 Aligned_cols=659 Identities=26% Similarity=0.411 Sum_probs=567.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
.++|||+|++|.|+|||||++++||++|.+... ..|....||+++.|++|||||+++++++.|.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-------------- 102 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-------------- 102 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--------------
Confidence 579999999999999999999999999988763 1222468999999999999999999999997
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHH
Q 003169 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~ 174 (843)
+++|||||||||+||+-|+.+|+++.||||+|+|++.||+.||..+|+|+.++++|.|.|+|||||. +++|
T Consensus 103 --~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRm----Ga~~--- 173 (721)
T KOG0465|consen 103 --DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRM----GASP--- 173 (721)
T ss_pred --cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhc----CCCh---
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 9984
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcC--CCHHHHHHhhccccccCC
Q 003169 175 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFFDP 252 (843)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--i~~~~l~~~~w~~~~~~~ 252 (843)
...+++++..+.. .|...++|+++. ++|. +|+...++.+|..
T Consensus 174 ----~~~l~~i~~kl~~-----------~~a~vqiPig~e----------------~~f~GvvDlv~~kai~~~g----- 217 (721)
T KOG0465|consen 174 ----FRTLNQIRTKLNH-----------KPAVVQIPIGSE----------------SNFKGVVDLVNGKAIYWDG----- 217 (721)
T ss_pred ----HHHHHHHHhhcCC-----------chheeEcccccc----------------ccchhHHhhhhceEEEEcC-----
Confidence 4445555554431 355558888875 2332 6777777778852
Q ss_pred CC-CceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc--
Q 003169 253 AT-RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 328 (843)
Q Consensus 253 ~~-~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 328 (843)
.. ..+...++ .....+...+-+..|+|.+++.|+++.+.||++ .+++.++++ .+++++.+ ++|+|+
T Consensus 218 ~~g~~i~~~eI-----P~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee--~~ps~~~l~---~aIRr~Ti~r~fvPVl~ 287 (721)
T KOG0465|consen 218 ENGEIVRKDEI-----PEDLEELAEEKRQALIETLADVDETLAEMFLEE--EEPSAQQLK---AAIRRATIKRSFVPVLC 287 (721)
T ss_pred CCCceeEeccC-----CHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcc--CCCCHHHHH---HHHHHHHhhcceeeEEe
Confidence 22 22333332 345667777889999999999999999999998 778888887 67888766 789997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCC-CeEEEEEEeeecCCCCceeEEEEEE
Q 003169 329 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEG-PLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
Q Consensus 329 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-p~~a~VfK~~~~~~~g~~l~~~RV~ 399 (843)
+|+|||+|++|||||.|.+++.+.+-.+ +++ ........+. ||+|++||+..+++ |+ +.|+|||
T Consensus 288 GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~---~~e--kv~l~~~~d~~Pfv~LAFKle~g~f-Gq-LTyvRvY 360 (721)
T KOG0465|consen 288 GSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETN---SKE--KVTLSPSRDKDPFVALAFKLEEGRF-GQ-LTYVRVY 360 (721)
T ss_pred chhhcccCcchHHHHHHHhCCChhhhcccccccCCC---Ccc--ceEeccCCCCCceeeeEEEeeecCc-cc-eEEEEEe
Confidence 8999999999999999998876652111 111 2233333333 99999999999888 77 9999999
Q ss_pred eeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003169 400 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 478 (843)
Q Consensus 400 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~ 478 (843)
+|+|++|+.+| |.+++++ +|+.+|+.||+.+.++|+++.|||||++.|++ + .|| |+++..+ ....+
T Consensus 361 qG~L~kG~~iy----N~rtgKK-----vrv~RL~rmHa~~medV~~v~AG~I~alfGid-c--asGDTftd~~~-~~~~m 427 (721)
T KOG0465|consen 361 QGTLSKGDTIY----NVRTGKK-----VRVGRLVRMHANDMEDVNEVLAGDICALFGID-C--ASGDTFTDKQN-LALSM 427 (721)
T ss_pred eeeecCCcEEE----ecCCCce-----eEhHHHhHhcccccchhhhhhccceeeeeccc-c--ccCceeccCcc-cccee
Confidence 99999999999 6666765 89999999999999999999999999999994 4 588 9998742 15677
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEE
Q 003169 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 557 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 557 (843)
..+..| +||+++||+|.++.|.+++.+||.++.+|||||+++.| |+||++|+|||||||||..+||+++| |+++.+
T Consensus 428 ~si~vP-ePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy--~~~~~~ 504 (721)
T KOG0465|consen 428 ESIHIP-EPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREY--KVDAEL 504 (721)
T ss_pred eeeecC-CCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHh--CCcccc
Confidence 888886 99999999999999999999999999999999999998 99999999999999999999999999 999999
Q ss_pred cCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEE-E
Q 003169 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIW-C 636 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~-~ 636 (843)
|+|+|+|||||..++.+. ..|++ |+|+. +||+- +. .
T Consensus 505 Gkp~VayRETi~~~~~f~------~~hKk----------------qSgG~--------------gqy~k-------v~g~ 541 (721)
T KOG0465|consen 505 GKPQVAYRETITSPVEFD------YTHKK----------------QSGGA--------------GQYGK-------VEGV 541 (721)
T ss_pred CCceeeehhhcCCcccce------eeecc----------------ccCCC--------------ccccc-------eeeE
Confidence 999999999999887543 34555 77775 67773 22 2
Q ss_pred eccCCCC---CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHH
Q 003169 637 FGPETIG---PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARR 712 (843)
Q Consensus 637 ~~p~~~g---~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~ 712 (843)
++|-+.+ ...|.+.+.|+..+.++++++++||.++++.|||.|+|+.|+++.|.||.+|. ||++.+ |+.|++.
T Consensus 542 ~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~ela---f~~at~~ 618 (721)
T KOG0465|consen 542 IEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELA---FMKATRN 618 (721)
T ss_pred EeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHH---HHHHHHH
Confidence 5553332 35789999999999999999999999999999999999999999999999998 888876 5689999
Q ss_pred HHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCc
Q 003169 713 VIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQ 792 (843)
Q Consensus 713 a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~ 792 (843)
||++|+.+|+|+||||||.|||++|+|++|.|+++|++|+|.|.+.+..+ +.++|.|.|||.+||||+++|||+|+|+
T Consensus 619 a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~--~~~ti~A~VPL~~mfgYss~LRslTqGk 696 (721)
T KOG0465|consen 619 AFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSE--DYKTIKAEVPLNEMFGYSSELRSLTQGK 696 (721)
T ss_pred HHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCC--ceEEEEecccHHHHhhhhhhhhhhhcCc
Confidence 99999999999999999999999999999999999999999999998665 5999999999999999999999999999
Q ss_pred eeeeeEecceeecCCCCCCCchhHHHHHH
Q 003169 793 AFPQCVFDHWDMMSSDPLEPGSQASQLVL 821 (843)
Q Consensus 793 ~~~~~~f~~y~~v~~d~~~~~~~~~~~~~ 821 (843)
|.|+|+|++|+++|.+. +.+++.
T Consensus 697 geftMEys~y~p~~~~v------q~~~~~ 719 (721)
T KOG0465|consen 697 GEFTMEYSRYSPVPPDV------QDQLVH 719 (721)
T ss_pred ceEEEeecccCCCchHH------HHHhhc
Confidence 99999999999999984 556543
No 9
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1e-122 Score=1107.71 Aligned_cols=712 Identities=39% Similarity=0.677 Sum_probs=616.4
Q ss_pred cHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechh
Q 003169 5 TAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDA 84 (843)
Q Consensus 5 ~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~ 84 (843)
..++|.++|++.+++|||+++||.|||||||+++|++.+|.+.+...|..+++|+.++|++||+|+.++.+++.|.
T Consensus 5 ~~~~~~~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~---- 80 (720)
T TIGR00490 5 MIDKIKELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE---- 80 (720)
T ss_pred HHHHHHHHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe----
Confidence 4788999999999999999999999999999999999999998876777788999999999999999988776553
Q ss_pred hhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccc
Q 003169 85 ALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 85 ~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~ 164 (843)
.+++++.++|||||||.+|..++.++++.+|+||+|+|+.+|+..+|+.+|+++...++|+++|+||||+..
T Consensus 81 --------~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 81 --------YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred --------ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 123589999999999999999999999999999999999999999999999999899999999999999998
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhhhccCCC-CCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHh
Q 003169 165 LELQVDGEEAYQTFQKVIENANVIMATYEDPL-LGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 243 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 243 (843)
.++...+++++++|.+++..++..+.....+. .+.+.+.|..+++.|+|+..+|+|++++|.+. .++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~-----~~~------- 220 (720)
T TIGR00490 153 NELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKT-----GIG------- 220 (720)
T ss_pred chhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhc-----CCC-------
Confidence 88888899999999999999998875432111 12345678889999999999999988754211 000
Q ss_pred hccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHH
Q 003169 244 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 323 (843)
Q Consensus 244 ~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 323 (843)
| ++ |.++++. .. .++ +.
T Consensus 221 ---------------------------~--------~~------------l~~~~~~--~~--~~~------------~~ 237 (720)
T TIGR00490 221 ---------------------------F--------KD------------IYKYCKE--DK--QKE------------LA 237 (720)
T ss_pred ---------------------------H--------HH------------HHHHHHh--cc--HHH------------Hh
Confidence 0 11 2223322 00 111 12
Q ss_pred hhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEe
Q 003169 324 TWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKV 403 (843)
Q Consensus 324 ~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L 403 (843)
+|+|++++|||+|++|+|||.+++.+++..++.+..+++.......||+++|++|+|||+..+++.|. ++|+|||||+|
T Consensus 238 ~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~-ia~~RV~sGtL 316 (720)
T TIGR00490 238 KKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGE-VAVGRLYSGTI 316 (720)
T ss_pred hhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcE-EEEEEEEeCEE
Confidence 58999999999999999999988777766665543222323456789999999999999999888887 99999999999
Q ss_pred cCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccc
Q 003169 404 ATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMK 482 (843)
Q Consensus 404 ~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~ 482 (843)
++||.|++.+++ .+ ++|.+|+.++|.+.+++++|.|||||++.|++++ .+| |||+.... ..+++++.
T Consensus 317 ~~G~~l~~~~~~----~~-----~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~--~~GdtL~~~~~~-~~~~~~~~ 384 (720)
T TIGR00490 317 RPGMEVYIVDRK----AK-----ARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDA--VAGETICTTVEN-ITPFESIK 384 (720)
T ss_pred cCCCEEEEcCCC----Ce-----eEeeEEEEeccCCccCccEECCCCEEEEECcccc--ccCceeecCCcc-cccCcccc
Confidence 999999976532 22 7999999999999999999999999999999887 567 99876541 34456665
Q ss_pred cCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCe
Q 003169 483 FSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPV 561 (843)
Q Consensus 483 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~ 561 (843)
..++|+++++|+|.+++|.++|.+||++|++|||+|+|+.+ +|||++|+||||+|||+|++||+++| |+++++++|+
T Consensus 385 ~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~--~vev~~~~P~ 462 (720)
T TIGR00490 385 HISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDY--GLDVETSPPI 462 (720)
T ss_pred cCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHh--CCceeecCCE
Confidence 44599999999999999999999999999999999999997 89999999999999999999999999 9999999999
Q ss_pred EeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCC-CCChhhHHHhhhhhcCCcccccceEEEeccC
Q 003169 562 VSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGP-RDDPKVRSKILSEEFGWDKDLAKKIWCFGPE 640 (843)
Q Consensus 562 V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~-~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~ 640 (843)
|+|||||++.++. ...+.+++|++++++++|++..+.+.|++|.+.. ...++.+..+| ..|||+...++++|+|+
T Consensus 463 V~YrETi~~~~~~-~~~~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~-- 538 (720)
T TIGR00490 463 VVYRETVTGTSPV-VEGKSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLL-IEAGMDSEEAARVEEYY-- 538 (720)
T ss_pred EEEEEeccccccc-eEEEcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHH-HhcCCchhhhcCEEEec--
Confidence 9999999998752 1234477899999999999998888998887653 23456667777 46999999999999996
Q ss_pred CCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhh
Q 003169 641 TIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLT 720 (843)
Q Consensus 641 ~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~ 720 (843)
++|.|++.+.|+.+++++++||++||++|+++|||||+||+||+|+|+|+++|.|+.++..++|++|+++||++|+++
T Consensus 539 --~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~ 616 (720)
T TIGR00490 539 --EGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQ 616 (720)
T ss_pred --CCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999999999999999999997777777889999999999999999
Q ss_pred cCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEec
Q 003169 721 AKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFD 800 (843)
Q Consensus 721 a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~ 800 (843)
|+|+||||||+|||+||++++|+|++||++|||+|++++.. ++.++|+|++|++|||||+++|||+|+|+|+|+|+|+
T Consensus 617 a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~--~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~ 694 (720)
T TIGR00490 617 AKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQE--GDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHA 694 (720)
T ss_pred CCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccC--CCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEec
Confidence 99999999999999999999999999999999999988743 2579999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCchhHHHHHHHHHHhcCCCCC
Q 003169 801 HWDMMSSDPLEPGSQASQLVLDIRKRKGLKEQ 832 (843)
Q Consensus 801 ~y~~v~~d~~~~~~~~~~~~~~~r~rkGl~~~ 832 (843)
||++||++ ++++++.++|+||||+|+
T Consensus 695 ~y~~vp~~------~~~~ii~~~r~rkgl~~~ 720 (720)
T TIGR00490 695 GFELVPQN------LQQEFVMEVRKRKGLKLE 720 (720)
T ss_pred ccccCCHH------HHHHHHHHHHhhcCCCCC
Confidence 99999976 599999999999999874
No 10
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-114 Score=1033.86 Aligned_cols=665 Identities=29% Similarity=0.434 Sum_probs=560.6
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+++|||+|+||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~------------- 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-------------
Confidence 4679999999999999999999999999987552 1112579999999999999999999999996
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~ 173 (843)
+++++|||||||.+|..++.++++.+|+||+||||.+|++.||+.+|+++...++|.|+++||||+. +++..
T Consensus 72 ---~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~----~~~~~- 143 (691)
T PRK12739 72 ---GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRI----GADFF- 143 (691)
T ss_pred ---CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHH-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 76633
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCC
Q 003169 174 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
+++++++..+.. .+...++|++.. .++.- .+|+..+..++|++...
T Consensus 144 ------~~~~~i~~~l~~-----------~~~~~~iPis~~-~~f~g-------------~vd~~~~~~~~~~~~~~--- 189 (691)
T PRK12739 144 ------RSVEQIKDRLGA-----------NAVPIQLPIGAE-DDFKG-------------VIDLIKMKAIIWDDETL--- 189 (691)
T ss_pred ------HHHHHHHHHhCC-----------CceeEEeccccc-ccceE-------------EEEcchhhhhhccCCCC---
Confidence 333444433321 122234555432 11110 15667777889976411
Q ss_pred CCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc----
Q 003169 254 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 328 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (843)
+.++...+ ....+.+++++++++|++++++.|+++|++||++ .+++.+++. .++.+.++ .+|+|+
T Consensus 190 ~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~--~~~~~~~l~---~~l~~~~~~~~~~Pv~~gS 259 (691)
T PRK12739 190 GAKYEEED-----IPADLKEKAEEYREKLIEAVAEVDEELMEKYLEG--EEITEEEIK---AAIRKATINMEFFPVLCGS 259 (691)
T ss_pred CCeeEEcC-----CCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhcc--CCCCHHHHH---HHHHHHHHcCCEEEEEecc
Confidence 22343332 2345778899999999999999999999999987 568888886 35555555 589997
Q ss_pred ------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeE
Q 003169 329 ------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (843)
Q Consensus 329 ------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~ 402 (843)
+++|||+|++++|||.+++..+...... + ....+.|++++|++|+|||++++++.|+ ++|+|||||+
T Consensus 260 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~----~--~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~sGt 332 (691)
T PRK12739 260 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDT----E--EEIERPASDDEPFAALAFKIMTDPFVGR-LTFFRVYSGV 332 (691)
T ss_pred ccCCccHHHHHHHHHHHCCChhhccccccccCCC----C--cceeeccCCCCCeEEEEEEeeeCCCCCe-EEEEEEeeeE
Confidence 7999999999999998876654432211 1 2356789999999999999999999887 9999999999
Q ss_pred ecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003169 403 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAM 481 (843)
Q Consensus 403 L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~ 481 (843)
|++||.|++ .+++++ +++++||.++|++..++++++|||||+|.|++++ ++| ||++... +..++++
T Consensus 333 L~~g~~v~~----~~~~~~-----~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~l~~~ 399 (691)
T PRK12739 333 LESGSYVLN----TTKGKK-----ERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT--TTGDTLCDEKA--PIILESM 399 (691)
T ss_pred EcCCCEEEe----CCCCce-----EEecceEEEecCCcccccccCCCCEEEEeCCCcc--cCCCEEeCCCC--ccccCCC
Confidence 999999984 333333 7999999999999999999999999999999986 788 9988766 6677888
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCC
Q 003169 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 482 ~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
.++ .|+++++|+|.+++|+++|.+||++|.+|||+|+|+++ +|||++|+||||||||+|++||+++| +++|++++|
T Consensus 400 ~~~-~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f--~vev~~s~p 476 (691)
T PRK12739 400 EFP-EPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREF--KVEANVGAP 476 (691)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHh--CCeeEecCC
Confidence 886 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred eEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEE-ecc
Q 003169 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC-FGP 639 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~p 639 (843)
+|+|||||.+.++ ..++|++ ++|+. ++|+ .+|. ++|
T Consensus 477 ~V~yrEti~~~~~------~~~~~~~----------------~s~g~--------------~~~~-------~v~l~~~P 513 (691)
T PRK12739 477 QVAYRETITKSVE------AEGKYKK----------------QSGGR--------------GQYG-------DVWIEFEP 513 (691)
T ss_pred EEEEeeccCCccc------ccceecc----------------ccCCC--------------Ccee-------EEEEEEEE
Confidence 9999999998763 2344443 44432 3333 2443 677
Q ss_pred CCCC-CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHH
Q 003169 640 ETIG-PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 640 ~~~g-~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a 717 (843)
...| ++.|.+++.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|. |+.+ .+++.|+++||++|
T Consensus 514 ~~~~~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~---~~~~~a~~~a~~~a 590 (691)
T PRK12739 514 NEEGKGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSE---LAFKIAASMALKEA 590 (691)
T ss_pred CCCCCCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcH---HHHHHHHHHHHHHH
Confidence 5443 58899999999999999999999999999999999999999999999999997 5543 35678999999999
Q ss_pred HhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeee
Q 003169 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 797 (843)
Q Consensus 718 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..++ .+.|+|++|++|+|||+++||++|+|+|+|+|
T Consensus 591 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~--~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~ 668 (691)
T PRK12739 591 AKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGG--AQIVKAFVPLSEMFGYATDLRSATQGRATFSM 668 (691)
T ss_pred HHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCC--cEEEEEEeCHHHhhccHHHHHhhccCceEEEE
Confidence 9999999999999999999999999999999999999999987654 67899999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchhHHHHHHH
Q 003169 798 VFDHWDMMSSDPLEPGSQASQLVLD 822 (843)
Q Consensus 798 ~f~~y~~v~~d~~~~~~~~~~~~~~ 822 (843)
+|+||+++|++. +++++++
T Consensus 669 ~f~~y~~v~~~~------~~~ii~~ 687 (691)
T PRK12739 669 EFDHYEEVPKNI------AEEIIKK 687 (691)
T ss_pred EeccceECCHHH------HHHHHHH
Confidence 999999999764 7887655
No 11
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-113 Score=1027.27 Aligned_cols=666 Identities=28% Similarity=0.412 Sum_probs=552.3
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.++||||+|+||+|+|||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++.+++.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~------------- 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK------------- 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-------------
Confidence 5789999999999999999999999999987652 1122579999999999999999999999996
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~ 173 (843)
+++++|||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+|+|+||||+. +++..+
T Consensus 74 ---~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~----~~~~~~ 146 (693)
T PRK00007 74 ---DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRT----GADFYR 146 (693)
T ss_pred ---CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCC----CCCHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 776333
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCC
Q 003169 174 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
. +++++..+.. .+...++|++ +..|+.-. +|+..+..++|++.. .
T Consensus 147 ~-------~~~i~~~l~~-----------~~~~~~ipis-a~~~f~g~-------------~d~~~~~~~~~~~~~---~ 191 (693)
T PRK00007 147 V-------VEQIKDRLGA-----------NPVPIQLPIG-AEDDFKGV-------------VDLVKMKAIIWNEAD---L 191 (693)
T ss_pred H-------HHHHHHHhCC-----------CeeeEEecCc-cCCcceEE-------------EEcceeeeeecccCC---C
Confidence 3 3333332211 1112245553 32221100 345556667886421 1
Q ss_pred CCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc----
Q 003169 254 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA---- 328 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~---- 328 (843)
+.++...+ ......+++.+++++|++.+++.|+++|++||++ .+++.+++. ++++++++ .+|+|+
T Consensus 192 ~~~~~~~~-----~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~l~~~~l~---~~l~~~~~~~~~~Pv~~gS 261 (693)
T PRK00007 192 GATFEYEE-----IPADLKDKAEEYREKLIEAAAEADEELMEKYLEG--EELTEEEIK---AALRKATIANEIVPVLCGS 261 (693)
T ss_pred CCcceEcc-----CCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCc--CCCCHHHHH---HHHHHHHhcCcEEEEEecc
Confidence 22333322 1234567888999999999999999999999986 889999987 55666655 589998
Q ss_pred ------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeE
Q 003169 329 ------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGK 402 (843)
Q Consensus 329 ------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~ 402 (843)
+++|||+|++++|+|.+++..+.. ..+.+.....+.||+++|++|||||+.++++.|+ ++|+|||||+
T Consensus 262 a~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-ia~~RV~sGt 335 (693)
T PRK00007 262 AFKNKGVQPLLDAVVDYLPSPLDVPAIKGI-----LPDGEEEEVERKASDDEPFSALAFKIMTDPFVGK-LTFFRVYSGV 335 (693)
T ss_pred cccCcCHHHHHHHHHHHCCChhhccccccc-----CCCccccceeecCCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeE
Confidence 599999999999999876543210 0011112456789999999999999999999887 9999999999
Q ss_pred ecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccccccc
Q 003169 403 VATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAM 481 (843)
Q Consensus 403 L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~ 481 (843)
|++||.|++ .+.++ .++|++||.++|++..++++++|||||++.|++++ ++| ||++.+. +..++++
T Consensus 336 l~~g~~v~~----~~~~~-----~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~GdtL~~~~~--~~~l~~~ 402 (693)
T PRK00007 336 LESGSYVLN----STKGK-----KERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT--TTGDTLCDEKN--PIILESM 402 (693)
T ss_pred EcCCCEEEe----CCCCc-----eeEeceeEEeccCCcccccccCCCcEEEEeCCccC--CcCCEeeCCCC--ccccCCC
Confidence 999999994 33333 27999999999999999999999999999999886 688 9988766 6677788
Q ss_pred ccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCC
Q 003169 482 KFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDP 560 (843)
Q Consensus 482 ~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p 560 (843)
.++ .|+++++|+|.++.|.++|.+||++|.+|||||+|+.+ +|||++|+||||||||||++||+++| ++++++++|
T Consensus 403 ~~~-~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~--~vev~~s~p 479 (693)
T PRK00007 403 EFP-EPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREF--KVEANVGKP 479 (693)
T ss_pred CCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHh--CCeeEecCC
Confidence 776 99999999999999999999999999999999999997 89999999999999999999999999 999999999
Q ss_pred eEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEE-ecc
Q 003169 561 VVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC-FGP 639 (843)
Q Consensus 561 ~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~p 639 (843)
+|+|||||+++++. .++|++ +.|+. +||+ .+|. ++|
T Consensus 480 ~V~yrETi~~~~~~------~~~~~~----------------~~gg~--------------~~~~-------~v~l~~eP 516 (693)
T PRK00007 480 QVAYRETIRKKVEV------EGKFVK----------------QSGGR--------------GQYG-------HVVIEFEP 516 (693)
T ss_pred EEEEeecccCcccc------Cccccc----------------ccCCC--------------CceE-------EEEEEEEe
Confidence 99999999987632 334433 33332 2333 2343 555
Q ss_pred CCC-CCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHH
Q 003169 640 ETI-GPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 640 ~~~-g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a 717 (843)
... .++.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|. |+++ .++..|+++||++|
T Consensus 517 ~~~~~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~---~~~~~a~~~a~~~a 593 (693)
T PRK00007 517 NEPGKGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSE---MAFKIAGSMAFKEA 593 (693)
T ss_pred CCCCCCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcH---HHHHHHHHHHHHHH
Confidence 433 257788888999999999999999999999999999999999999999999997 6654 35778999999999
Q ss_pred HhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeee
Q 003169 718 QLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQC 797 (843)
Q Consensus 718 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 797 (843)
+++|+|+||||||+|||+||++++|+|+++|++|||+|+++++.. +.+.|+|++|++|||||+++|||+|+|+|+|+|
T Consensus 594 ~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~ 671 (693)
T PRK00007 594 AKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRG--GAKVIRAEVPLSEMFGYATDLRSMTQGRATYSM 671 (693)
T ss_pred HHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccC--CcEEEEEEcCHHHhhccHHHHHhhcCCceEEEE
Confidence 999999999999999999999999999999999999999987654 478999999999999999999999999999999
Q ss_pred EecceeecCCCCCCCchhHHHHHHH
Q 003169 798 VFDHWDMMSSDPLEPGSQASQLVLD 822 (843)
Q Consensus 798 ~f~~y~~v~~d~~~~~~~~~~~~~~ 822 (843)
+|+||++||++. +++++.+
T Consensus 672 ~f~~y~~v~~~~------~~~~~~~ 690 (693)
T PRK00007 672 EFDHYEEVPKNV------AEEIIKK 690 (693)
T ss_pred EeceeeECCHHH------HHHHHHH
Confidence 999999999874 6776544
No 12
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.2e-111 Score=1007.75 Aligned_cols=663 Identities=28% Similarity=0.399 Sum_probs=547.1
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
..++||||+|+||+|||||||+++|++.+|.+.+. ..| .+++|+.++|++||+|++++..++.|.
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g-~~~~D~~~~e~~rgiti~~~~~~~~~~----------- 73 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG-AATMDWMEQEKERGITITSAATTVFWK----------- 73 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC-ccccCCCHHHHhcCCCEecceEEEEEC-----------
Confidence 35789999999999999999999999999987552 122 478999999999999999999999996
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCH
Q 003169 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~ 171 (843)
+++++|||||||.+|..++.++++.+|++|+|||+.+|++.+++.+|+++...++|+++|+||||+. +++.
T Consensus 74 -----~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~----~~~~ 144 (689)
T TIGR00484 74 -----GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKT----GANF 144 (689)
T ss_pred -----CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCC----CCCH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 7764
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccC
Q 003169 172 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
++ .+++++..+.. .+...++|++. ..++.-. +|+..+..+ +|+
T Consensus 145 ~~-------~~~~i~~~l~~-----------~~~~~~ipis~-~~~~~~~-------------id~~~~~~~-----~~~ 187 (689)
T TIGR00484 145 LR-------VVNQIKQRLGA-----------NAVPIQLPIGA-EDNFIGV-------------IDLVEMKAY-----FFN 187 (689)
T ss_pred HH-------HHHHHHHHhCC-----------CceeEEecccc-CCCceEE-------------EECccceEE-----ecc
Confidence 33 33334333321 12223455533 2221000 233332222 333
Q ss_pred CCC-CceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc-
Q 003169 252 PAT-RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA- 328 (843)
Q Consensus 252 ~~~-~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~- 328 (843)
+.. ..+... .....+.+++.+++++|++++++.|+++|++||++ .+++.+++. +++.++++ .+++|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~--~~~~~~~l~---~~l~~~~~~~~~~PV~ 257 (689)
T TIGR00484 188 GDKGTKAIEK-----EIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEG--EELTIEEIK---NAIRKGVLNCEFFPVL 257 (689)
T ss_pred cCCCceeeec-----cCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCCEEEEE
Confidence 221 112221 23456788899999999999999999999999986 788888886 55666655 578887
Q ss_pred ---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEE
Q 003169 329 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
Q Consensus 329 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~ 399 (843)
+++|||+|++++|||.+++..+... .+......+.|++++|++|+|||+..+++.|. ++|+|||
T Consensus 258 ~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~------~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~-i~~~RV~ 330 (689)
T TIGR00484 258 CGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGID------PDTEKEIERKASDDEPFSALAFKVATDPFVGQ-LTFVRVY 330 (689)
T ss_pred eccccCCccHHHHHHHHHHHCCCchhcccccccC------CCCCceeeecCCCCCceEEEEEEeeecCCCCe-EEEEEEE
Confidence 5999999999999998765432111 01112345788999999999999999999886 9999999
Q ss_pred eeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccc
Q 003169 400 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPI 478 (843)
Q Consensus 400 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~ 478 (843)
||+|++||.|++ .+.+++ +++++|+.++|++..++++++|||||++.|++++ .+| ||++.+. +..+
T Consensus 331 sGtL~~g~~v~~----~~~~~~-----~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~ 397 (689)
T TIGR00484 331 SGVLKSGSYVKN----SRKNKK-----ERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT--TTGDTLCDPKI--DVIL 397 (689)
T ss_pred EeEEcCCCEEEe----CCCCce-----EEecceEEeecCCcccccccCCCCEEEEcCCCCC--CCCCEEeCCCC--cccc
Confidence 999999999995 333332 7999999999999999999999999999999887 677 9988766 6677
Q ss_pred cccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEE
Q 003169 479 RAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIK 557 (843)
Q Consensus 479 ~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~ 557 (843)
+++.++ +|+++++|+|.++.|.++|.+||++|.+|||+|+|+.+ +|||++|+||||||||||++||+++| |+++++
T Consensus 398 ~~~~~~-~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~--~vev~~ 474 (689)
T TIGR00484 398 ERMEFP-EPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREF--KVEANV 474 (689)
T ss_pred CCCCCC-CceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHh--CCeeEe
Confidence 788775 99999999999999999999999999999999999997 89999999999999999999999999 999999
Q ss_pred cCCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEE-
Q 003169 558 SDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC- 636 (843)
Q Consensus 558 ~~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~- 636 (843)
++|+|+|||||.++++. .++|++ ++|+. ++|+ .||.
T Consensus 475 ~~p~V~yrEti~~~~~~------~~~~~~----------------~~~~~--------------~~~~-------~v~l~ 511 (689)
T TIGR00484 475 GAPQVAYRETIRSKVEV------EGKHAK----------------QSGGR--------------GQYG-------HVKIR 511 (689)
T ss_pred cCCEEEEeecccCcccc------cccccc----------------ccCCC--------------CceE-------EEEEE
Confidence 99999999999987642 233332 33322 2332 2433
Q ss_pred eccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHH
Q 003169 637 FGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIY 715 (843)
Q Consensus 637 ~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~ 715 (843)
++|...+++.|.+.+.++..+++++++|++||+||+++|||||+||+||+|+|+|+++|. |+.. .++..|+++||+
T Consensus 512 ~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~---~~~~~a~~~a~~ 588 (689)
T TIGR00484 512 FEPLEPKGYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSE---MAFKLAASLAFK 588 (689)
T ss_pred EEECCCCCcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCH---HHHHHHHHHHHH
Confidence 455444456778888888899999999999999999999999999999999999999996 5543 356689999999
Q ss_pred HHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceee
Q 003169 716 ASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFP 795 (843)
Q Consensus 716 ~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~ 795 (843)
+|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+ +.+.|+|++|++|||||+++||++|+|+|+|
T Consensus 589 ~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~--~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~ 666 (689)
T TIGR00484 589 EAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARG--NVQKIKAEVPLSEMFGYATDLRSFTQGRGTY 666 (689)
T ss_pred HHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccC--CcEEEEEEeCHHHHhChHHHHHHhcCCceEE
Confidence 99999999999999999999999999999999999999999887654 5799999999999999999999999999999
Q ss_pred eeEecceeecCCCCCCCchhHHHHHHH
Q 003169 796 QCVFDHWDMMSSDPLEPGSQASQLVLD 822 (843)
Q Consensus 796 ~~~f~~y~~v~~d~~~~~~~~~~~~~~ 822 (843)
+|+|+||++||+++ +++++++
T Consensus 667 ~~~f~~y~~v~~~~------~~~ii~~ 687 (689)
T TIGR00484 667 SMEFLHYGEVPSSV------ANEIIEK 687 (689)
T ss_pred EEEeccceeCCHHH------HHHHHHh
Confidence 99999999999986 7777644
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=1.9e-108 Score=986.77 Aligned_cols=660 Identities=29% Similarity=0.411 Sum_probs=547.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc--CCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV--AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
.+++|||+|+||.|+|||||+++|++.+|.+.+.. .+..+.+|+.+.|++||+|+.++..++.|.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~------------- 71 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD------------- 71 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC-------------
Confidence 46799999999999999999999999998876521 112468999999999999999999999996
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~ 173 (843)
++.++|||||||.||..++..+++.+|++++|+|+++|++.++..+|+++...++|+++|+||+|+. +++
T Consensus 72 ---~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~----~~~--- 141 (687)
T PRK13351 72 ---NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRV----GAD--- 141 (687)
T ss_pred ---CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCC----CCC---
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 877
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeec--cCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccC
Q 003169 174 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFS--AGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~--s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
+++.+++++..+.. .+...++|.+ +.+.||. |+..+..+.|+..
T Consensus 142 ----~~~~~~~i~~~l~~-----------~~~~~~~P~~~~~~~~g~i----------------d~~~~~~~~~~~~--- 187 (687)
T PRK13351 142 ----LFKVLEDIEERFGK-----------RPLPLQLPIGSEDGFEGVV----------------DLITEPELHFSEG--- 187 (687)
T ss_pred ----HHHHHHHHHHHHCC-----------CeEEEEeccccCCceEEEE----------------ECccceEEecccC---
Confidence 44555555554432 1111233332 3344442 2233334556432
Q ss_pred CCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc--
Q 003169 252 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-- 328 (843)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-- 328 (843)
..+..+...+ ....|.+++++++++|++.+++.|++++++||++ .+++.+++. .++++.++ ++|+|+
T Consensus 188 ~~~~~~~~~~-----~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~--~~l~~~~l~---~~~~~~~~~~~~~PV~~ 257 (687)
T PRK13351 188 DGGSTVEEGP-----IPEELLEEVEEAREKLIEALAEFDDELLELYLEG--EELSAEQLR---APLREGTRSGHLVPVLF 257 (687)
T ss_pred CCCCceEEcc-----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEe
Confidence 1122333322 2346888999999999999999999999999985 889999986 34444443 689997
Q ss_pred --------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEe
Q 003169 329 --------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFS 400 (843)
Q Consensus 329 --------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~s 400 (843)
+++|||+|++++|+|.+++..+... . +. ....+.|++++|++|+|||++++++.|. ++|+||||
T Consensus 258 gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~--~----~~-~~~~~~~~~~~pl~a~VfK~~~d~~~G~-i~~~RV~s 329 (687)
T PRK13351 258 GSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSK--D----NG-KPVKVDPDPEKPLLALVFKVQYDPYAGK-LTYLRVYS 329 (687)
T ss_pred cccCcCccHHHHHHHHHHHCCChhhcccccccC--C----CC-CceeecCCCCCCeEEEEEEeeecCCCce-EEEEEEeE
Confidence 5899999999999998765543321 0 00 1123678999999999999999999887 99999999
Q ss_pred eEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCccccc
Q 003169 401 GKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIR 479 (843)
Q Consensus 401 G~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~ 479 (843)
|+|++||.|++.++ +. .+++++||.++|.+..++++++|||||++.|++++ .+| ||++... ...++
T Consensus 330 Gtl~~g~~v~~~~~----~~-----~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~--~~gdtl~~~~~--~~~~~ 396 (687)
T PRK13351 330 GTLRAGSQLYNGTG----GK-----REKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL--ETGDTLHDSAD--PVLLE 396 (687)
T ss_pred EEEcCCCEEEeCCC----CC-----ceEeeeEEEEccCCeeECCccCCCCEEEEECcccC--ccCCEEeCCCC--ccccC
Confidence 99999999997542 22 27999999999999999999999999999999987 567 9988765 55667
Q ss_pred ccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEc
Q 003169 480 AMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKS 558 (843)
Q Consensus 480 ~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~ 558 (843)
++.++ +|+++++|+|.+++|.++|.+||++|.+|||+|+|+.+ +|||++|+||||||||++++||+++| +++++++
T Consensus 397 ~~~~~-~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~--~vev~~~ 473 (687)
T PRK13351 397 LLTFP-EPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREF--KLEVNTG 473 (687)
T ss_pred CCCCC-CccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CCceEec
Confidence 77665 99999999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred CCeEeeEeccccccceeeeee----cCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceE
Q 003169 559 DPVVSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKI 634 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
+|+|+|||||++.++....++ ..+.+..++++++|++.
T Consensus 474 ~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~-------------------------------------- 515 (687)
T PRK13351 474 KPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLER-------------------------------------- 515 (687)
T ss_pred CCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCC--------------------------------------
Confidence 999999999998764321111 12223445555555431
Q ss_pred EEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHH
Q 003169 635 WCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 635 ~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~ 714 (843)
..++.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+++|.+.+ ..++|++|+++||
T Consensus 516 -------~~g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s--~~~~~~~a~~~a~ 586 (687)
T PRK13351 516 -------GAGFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDS--SESAFKAAARKAF 586 (687)
T ss_pred -------CCCcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCC--CHHHHHHHHHHHH
Confidence 1137888888899999999999999999999999999999999999999999997332 2578999999999
Q ss_pred HHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCcee
Q 003169 715 YASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAF 794 (843)
Q Consensus 715 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~ 794 (843)
++|+++|+|+||||||+|||+||++++|+|+++|++|||+|++++..+++ .+.|+|++|++|||||+++||++|+|+|+
T Consensus 587 ~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~-~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~ 665 (687)
T PRK13351 587 LEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDG-EVLVKAEAPLAELFGYATRLRSMTKGRGS 665 (687)
T ss_pred HHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCc-EEEEEEEECHHHhhChHHHHHhhcCCceE
Confidence 99999999999999999999999999999999999999999999876543 33499999999999999999999999999
Q ss_pred eeeEecceeecCCCCCCCchhHHHHH
Q 003169 795 PQCVFDHWDMMSSDPLEPGSQASQLV 820 (843)
Q Consensus 795 ~~~~f~~y~~v~~d~~~~~~~~~~~~ 820 (843)
|+|+|+||++||+++ +++++
T Consensus 666 ~~~~f~~y~~v~~~~------~~~~~ 685 (687)
T PRK13351 666 FTMEFSHFDPVPPAV------QKKVG 685 (687)
T ss_pred EEEEeccceeCCHHH------HHHHh
Confidence 999999999999885 66654
No 14
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.3e-101 Score=926.60 Aligned_cols=642 Identities=29% Similarity=0.424 Sum_probs=531.0
Q ss_pred EeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEE
Q 003169 25 IAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINL 102 (843)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (843)
+||+|||||||+++|++.+|.+.+. ..+..+++|+.+.|++||+|+..+..++.|. ++.++|
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~----------------~~~i~l 64 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK----------------GHKINL 64 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC----------------CEEEEE
Confidence 6999999999999999999988762 0112378999999999999999999999996 899999
Q ss_pred EcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHHHHHH
Q 003169 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 182 (843)
Q Consensus 103 iDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~~~~~ 182 (843)
||||||.+|..++.++++.+|++++|+|+++|+..++..+|+++...++|.++|+||+|+. +.+.. +++
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~----~~~~~-------~~~ 133 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRA----GADFF-------RVL 133 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHH-------HHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 66533 333
Q ss_pred HHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCceeecCC
Q 003169 183 ENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWTSRNT 262 (843)
Q Consensus 183 ~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~ 262 (843)
++++..+.. . ......|.. -++++.||...+ ....+ +|+ .+..+...+
T Consensus 134 ~~l~~~l~~---~--~~~~~~p~~----~~~~~~~~id~~----------------~~~~~-----~~~-~~~~~~~~~- 181 (668)
T PRK12740 134 AQLQEKLGA---P--VVPLQLPIG----EGDDFTGVVDLL----------------SMKAY-----RYD-EGGPSEEIE- 181 (668)
T ss_pred HHHHHHHCC---C--ceeEEeccc----CCCCceEEEECc----------------cceEE-----Eec-CCCeeEEec-
Confidence 444433321 0 001112322 134445553211 11112 333 233333322
Q ss_pred CCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc----------hHH
Q 003169 263 GSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA----------SSA 331 (843)
Q Consensus 263 ~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~----------~~~ 331 (843)
....+.+++.++++++++++++.|++++++||++ .+++.+++.. .+++.+. ++|+|+ ++.
T Consensus 182 ----~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~--~~l~~~~~~~---~~~~~~~~~~~~Pv~~gSA~~~~Gv~~ 252 (668)
T PRK12740 182 ----IPAELLDRAEEAREELLEALAEFDDELMEKYLEG--EELSEEEIKA---GLRKATLAGEIVPVFCGSALKNKGVQR 252 (668)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCC--CCCCHHHHHH---HHHHHHHcCCEEEEEeccccCCccHHH
Confidence 2345678889999999999999999999999987 7888888863 3444443 689998 899
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEE
Q 003169 332 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 411 (843)
Q Consensus 332 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 411 (843)
|||+|++++|+|.++++.. +. .........|++++|++|+|||++++++.|. ++|+|||||+|++||.|++
T Consensus 253 LLd~i~~~lPsp~~~~~~~------~~--~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~-i~~~RV~sG~L~~g~~v~~ 323 (668)
T PRK12740 253 LLDAVVDYLPSPLEVPPVD------GE--DGEEGAELAPDPDGPLVALVFKTMDDPFVGK-LSLVRVYSGTLKKGDTLYN 323 (668)
T ss_pred HHHHHHHHCCChhhccccc------CC--CCccccccccCCCCCeEEEEEEeeecCCCCc-EEEEEEeeeEEcCCCEEEe
Confidence 9999999999998765421 11 1112345678999999999999999998886 9999999999999999997
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEE
Q 003169 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (843)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~ 490 (843)
.+. +++ +++++|+.++|++.+++++|+|||||++.|++.. .+| ||++... +.+++++.++ +|+++
T Consensus 324 ~~~----~~~-----~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~--~~Gdtl~~~~~--~~~~~~~~~~-~P~~~ 389 (668)
T PRK12740 324 SGT----GKK-----ERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA--ATGDTLCDKGD--PILLEPMEFP-EPVIS 389 (668)
T ss_pred CCC----CCc-----EEecceeeecCCCccccCccCCCCEEEEeccCcc--CCCCEEeCCCC--ccccCCCCCC-CcceE
Confidence 542 222 7999999999999999999999999999999865 677 9988765 5677888886 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEeccc
Q 003169 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 491 ~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
++|+|.+++|.++|.+||++|.+|||+|+|..+ ++||++|+||||||||+|++||+++| ++++.+++|+|+|||||.
T Consensus 390 ~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~--~~~v~~~~p~V~yrEti~ 467 (668)
T PRK12740 390 LAIEPKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREY--GVEVETGPPQVPYRETIR 467 (668)
T ss_pred EEEEECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHh--CceeEecCCeeEEeeccC
Confidence 999999999999999999999999999999998 89999999999999999999999999 999999999999999999
Q ss_pred cccceeeeee----cCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCc
Q 003169 570 EKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 645 (843)
Q Consensus 570 ~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 645 (843)
++++.....+ ..+.+..++++++|++.+ .++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~---------------------------------------------~~~ 502 (668)
T PRK12740 468 KKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRG---------------------------------------------EGF 502 (668)
T ss_pred CCccccceeccccCCCCceEEEEEEEEECCCC---------------------------------------------Cce
Confidence 8764322211 122334667777776421 125
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHhhcCCe
Q 003169 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAKPR 724 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a~~~a~p~ 724 (843)
.|.+.+.|+.++++++++|++||++|+++|||||+||+||+|+|+|+.+|. |+. ..+|+.|+++||++|+++|+|+
T Consensus 503 ~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s~---~~~~~~a~~~a~~~a~~~a~~~ 579 (668)
T PRK12740 503 EFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSYHSVDSS---EMAFKIAARLAFREALPKAKPV 579 (668)
T ss_pred EEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccccCCCC---HHHHHHHHHHHHHHHHHhcCCe
Confidence 566677788889999999999999999999999999999999999999996 443 4468899999999999999999
Q ss_pred eeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceee
Q 003169 725 LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
||||||+|||++|++++|+|+++|++|||+|++++..++ + +.|+|++|++|||||+++||++|+|+|+|+++|+||++
T Consensus 580 LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~-~-~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~ 657 (668)
T PRK12740 580 LLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGG-G-DVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEE 657 (668)
T ss_pred eecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCC-C-EEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEeccccc
Confidence 999999999999999999999999999999999987664 3 89999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003169 805 MSSDP 809 (843)
Q Consensus 805 v~~d~ 809 (843)
+|+++
T Consensus 658 ~~~~~ 662 (668)
T PRK12740 658 VPGNV 662 (668)
T ss_pred CCHHH
Confidence 99875
No 15
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-97 Score=767.23 Aligned_cols=659 Identities=26% Similarity=0.368 Sum_probs=522.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc----eEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD----VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
.++|||+|++|+|+||||.++++||.+|.+.. .|. -+++|++..|++|||||+++.++|.|+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s--~g~vddgdtvtdfla~erergitiqsaav~fdwk------------ 100 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHS--AGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK------------ 100 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhc--ccccCCCchHHHHHHHHHhcCceeeeeeeecccc------------
Confidence 67999999999999999999999999999977 453 358999999999999999999999996
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHH
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~ 172 (843)
+++||+||||||+||.-|+.+.+|+.||++.|+|++.||++||.++|+|+.+.++|.+.|+||||+. +++++
T Consensus 101 ----g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~----~anfe 172 (753)
T KOG0464|consen 101 ----GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKL----AANFE 172 (753)
T ss_pred ----cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhh----hhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88744
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCC
Q 003169 173 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
. .++.+...+. ..|.+.++|++.+. .|.+-| +|...-.+.+|+-+.-|+
T Consensus 173 ~-------avdsi~ekl~-----------ak~l~l~lpi~eak--------~fnkg~-----ldil~ke~l~~ncnsndg 221 (753)
T KOG0464|consen 173 N-------AVDSIEEKLG-----------AKALKLQLPIGEAK--------GFNKGF-----LDILHKEKLLGNCNSNDG 221 (753)
T ss_pred h-------HHHHHHHHhC-----------CceEEEEecccccc--------cccchH-----HHHHHHhhccCCCCCCcc
Confidence 4 4444444442 13455578887762 111101 333333345674322222
Q ss_pred CCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCc---CCHHHHHHhhHHHHHH-HHHhhccc
Q 003169 253 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVT---MKSEEKELMGKALMKR-VMQTWLPA 328 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~---l~~~el~~~~~~l~~~-i~~~~~P~ 328 (843)
+.|...|- ...-.++..+...+....|++.+++.|++...++|+.+... ++.++++ .++.+- +.++..|+
T Consensus 222 --kd~e~~pl-le~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~elk---sai~~lt~aq~a~~i 295 (753)
T KOG0464|consen 222 --KDFENKPL-LEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAEELK---SAIHELTCAQKAAPI 295 (753)
T ss_pred --ccccCCcc-cccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccccCHHHHH---HHHHHHhhhhhhcce
Confidence 33544431 00113456666777888999999999999999999987553 5667775 344443 34667775
Q ss_pred ----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003169 329 ----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
+|+|||+|.-|+|||.++ +|.+-.||+ ..++|+.||+.++..+|+ ++|.||
T Consensus 296 ~cgsaiknkgiqplldavtmylpspeer-nyeflqwyk-----------------ddlcalafkvlhdkqrg~-l~fmri 356 (753)
T KOG0464|consen 296 LCGSAIKNKGIQPLLDAVTMYLPSPEER-NYEFLQWYK-----------------DDLCALAFKVLHDKQRGP-LSFMRI 356 (753)
T ss_pred ehhhhhcccCccchhhhhhhccCChhhc-chHHHhhhh-----------------hhHHHHhhhhhcccccCc-eeEEEE
Confidence 799999999999999876 466777775 237899999999999998 999999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCC----
Q 003169 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---- 473 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~---- 473 (843)
|||+++++..+++...+ -+|++.+|+++.+++..+|+++.||+|....||+++ .|| |+.+++.+
T Consensus 357 ysgsi~~~~ai~nin~~---------~se~~~kl~~pfade~~~i~qlsagnialt~glk~t--atgdtivaskasa~aa 425 (753)
T KOG0464|consen 357 YSGSIHNNLAIFNINGM---------CSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT--ATGDTIVASKASAEAA 425 (753)
T ss_pred ecccccCceeeeecccc---------cccchHhhhccchhhhhhhhhcccccEEEEecceee--ccCCeEEecchhHHHH
Confidence 99999999999965433 237999999999999999999999999999999997 678 87655421
Q ss_pred ------------------CcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEech
Q 003169 474 ------------------DAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAG 534 (843)
Q Consensus 474 ------------------~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~G 534 (843)
+...+.++..| .|||+|.|||.+.+.++.+..||..|.+||||+.++.| +|||+++.|||
T Consensus 426 ~qk~~~egekk~~q~~daerll~agie~p-d~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqtil~~~g 504 (753)
T KOG0464|consen 426 AQKAAGEGEKKHLQNKDAERLLFAGIEIP-DAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQTILCGMG 504 (753)
T ss_pred HHHhhccchhhccCCccccceeeecccCC-CceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCceEEeccc
Confidence 12345677776 99999999999999999999999999999999999999 99999999999
Q ss_pred hhHHHHHHHHHHhhccCCeeEEEcCCeEeeEeccccccceeeeee---cCCcee-EEEEEEEeCchhhhhHHhcCCCCCC
Q 003169 535 ELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSK---SPNKHN-RLYMEARPLEEGLAEAIDDGRIGPR 610 (843)
Q Consensus 535 ElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~~~~~~~~~~~---~~~~~~-~~~~~~ePl~~~~~~~i~~g~~~~~ 610 (843)
|||+|++.+|++|+| |+++-+|+.+|+|||+|.+....+.... +..+|- -+.++++|.+. + ..++
T Consensus 505 elhie~ihdrikrey--~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~t------q-a~ip-- 573 (753)
T KOG0464|consen 505 ELHIEAIHDRIKREY--GLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEET------Q-AHIP-- 573 (753)
T ss_pred hhhHHHHHHHHHhhc--CchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccc------c-cccc--
Confidence 999999999999999 9999999999999999988643221110 122221 11222222211 0 0000
Q ss_pred CChhhHHHhhhhhcCCcccccceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEe
Q 003169 611 DDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVC 690 (843)
Q Consensus 611 ~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~ 690 (843)
.++|-.--|... | ...+.--+.+|+.|+..||..|||+|+|+++|++++.
T Consensus 574 --------------------~kkiefe~~es~--n--------~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~ 623 (753)
T KOG0464|consen 574 --------------------FKKIEFELAESA--N--------EGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLH 623 (753)
T ss_pred --------------------ceeEEeeccccc--c--------chhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeE
Confidence 001111001100 0 0112223689999999999999999999999999999
Q ss_pred eeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecC-cccccHHHHhhhccceeeeecccCCCCcEEE
Q 003169 691 DVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPE-QALGGIYSVLNQKRGHVFEEMQRPGTPLYNI 769 (843)
Q Consensus 691 d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~-~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I 769 (843)
.+.+|+.... +..+..++++|+.+|+++|.-+++||+|+++|.+.. +++..|++||.+|||++...+..+.+..-.|
T Consensus 624 ~~~i~~gk~n--~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri 701 (753)
T KOG0464|consen 624 ECIIHGGKIN--PALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRI 701 (753)
T ss_pred EEEecCCcCC--HHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchhee
Confidence 9999975433 234667899999999999999999999999999965 8999999999999999999988777666789
Q ss_pred EEEeehhhhcCccHHHhhhCCCceeeeeEecceeecCCC
Q 003169 770 KAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSSD 808 (843)
Q Consensus 770 ~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~d 808 (843)
.|.+|++|..||++.||.+|+|.|.|.++|++|+.|...
T Consensus 702 ~~~lplaei~~~s~~lrtltsg~a~~ale~~~yqamn~~ 740 (753)
T KOG0464|consen 702 CAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQAMNEH 740 (753)
T ss_pred eEeeeHHHhhcHHHHHHHHhcccceEEEEecchhhcChH
Confidence 999999999999999999999999999999999999765
No 16
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1e-77 Score=698.42 Aligned_cols=464 Identities=27% Similarity=0.477 Sum_probs=396.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
||||+|+||+|||||||+++|++.+|.+.+...-..+++|+.++|++||+||.++..++.|. ++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~----------------~~ 64 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN----------------GT 64 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC----------------CE
Confidence 69999999999999999999999999887742223468999999999999999999999996 89
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHH
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~ 178 (843)
+|||||||||.||..++.++++.+|+|++||||.+|+.+||+.+|+++...++|+|+|+||||+. +++++++...+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~----~a~~~~v~~ei 140 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----SARPDEVVDEV 140 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC----CcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 77655555544
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCcee
Q 003169 179 QKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKWT 258 (843)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~~ 258 (843)
.+.+..+.. .++ -...++.++|+..||+.... ..
T Consensus 141 ~~l~~~~g~-----~~e--------~l~~pvl~~SA~~g~~~~~~---------------------------~~------ 174 (594)
T TIGR01394 141 FDLFAELGA-----DDE--------QLDFPIVYASGRAGWASLDL---------------------------DD------ 174 (594)
T ss_pred HHHHHhhcc-----ccc--------cccCcEEechhhcCcccccC---------------------------cc------
Confidence 444433211 000 01124667788777654110 00
Q ss_pred ecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHHHh
Q 003169 259 SRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMIF 338 (843)
Q Consensus 259 ~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~~ 338 (843)
. + . .+.+||+++++
T Consensus 175 -----------------------------~-----------~--~------------------------gi~~Lld~Iv~ 188 (594)
T TIGR01394 175 -----------------------------P-----------S--D------------------------NMAPLFDAIVR 188 (594)
T ss_pred -----------------------------c-----------c--c------------------------CHHHHHHHHHH
Confidence 0 0 0 02578999999
Q ss_pred cCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCC
Q 003169 339 HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVP 418 (843)
Q Consensus 339 ~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~ 418 (843)
++|+|. .++++||.++|||++.+++.|+ ++++||+||+|++||.|++...+
T Consensus 189 ~lP~P~-------------------------~~~~~pl~~~V~~i~~d~~~Gr-v~~gRV~sG~lk~G~~V~~~~~~--- 239 (594)
T TIGR01394 189 HVPAPK-------------------------GDLDEPLQMLVTNLDYDEYLGR-IAIGRVHRGTVKKGQQVALMKRD--- 239 (594)
T ss_pred hCCCCC-------------------------CCCCCCEEEEEEEEEeeCCCce-EEEEEEEeCEEccCCEEEEecCC---
Confidence 999993 1356899999999999999998 99999999999999999976432
Q ss_pred CCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEeCC
Q 003169 419 GEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKV 497 (843)
Q Consensus 419 ~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~ 497 (843)
+. ...++|++|+.+.|.+..++++|.|||||++.|+++. ++| |||+... +.+++++.++ +|+++++++|.+
T Consensus 240 ~~---~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i--~~Gdtl~~~~~--~~~l~~~~~~-~P~~~~~~~~~~ 311 (594)
T TIGR01394 240 GT---IENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI--NIGETIADPEV--PEALPTITVD-EPTLSMTFSVND 311 (594)
T ss_pred Cc---eeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc--CCCCEEeCCCc--cccCCCCCCC-CCeEEEEEEecC
Confidence 11 1237999999999999999999999999999999886 788 9999887 7788888886 999999999975
Q ss_pred C---CChhH------HHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEec
Q 003169 498 A---SDLPK------LVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 498 ~---~d~~k------L~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
. .+..+ |.++|.++.++||+|+|+.+ +++|++|+|||||||+|++++|+|+ |+++.+++|+|+|||
T Consensus 312 ~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yre- 387 (594)
T TIGR01394 312 SPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRRE---GFELQVGRPQVIYKE- 387 (594)
T ss_pred CCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhcc---CceEEEeCCEEEEEe-
Confidence 4 44444 99999999999999999987 8999999999999999999999986 999999999999998
Q ss_pred cccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCceE
Q 003169 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~ 647 (843)
|.
T Consensus 388 i~------------------------------------------------------------------------------ 389 (594)
T TIGR01394 388 ID------------------------------------------------------------------------------ 389 (594)
T ss_pred CC------------------------------------------------------------------------------
Confidence 31
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeee
Q 003169 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlE 727 (843)
| .|||
T Consensus 390 -----g----------------------------------------------------------------------~llE 394 (594)
T TIGR01394 390 -----G----------------------------------------------------------------------KKLE 394 (594)
T ss_pred -----C----------------------------------------------------------------------eEEC
Confidence 0 4799
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecCC
Q 003169 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMSS 807 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~ 807 (843)
|||+++|.||++|+|+|+++|++|||+|+++++.++ +++.|+|.+|+++++||.++|||+|+|+|+|+++|+||+++|+
T Consensus 395 Pi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~-~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~ 473 (594)
T TIGR01394 395 PIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGN-GRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKG 473 (594)
T ss_pred CEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCC-CEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCC
Confidence 999999999999999999999999999999998543 5899999999999999999999999999999999999999998
Q ss_pred CC
Q 003169 808 DP 809 (843)
Q Consensus 808 d~ 809 (843)
+.
T Consensus 474 ~i 475 (594)
T TIGR01394 474 EI 475 (594)
T ss_pred cC
Confidence 74
No 17
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.7e-76 Score=682.86 Aligned_cols=465 Identities=27% Similarity=0.453 Sum_probs=396.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++|||+|+||+|||||||+++|++.+|.+.+......+++|+.++|++||+|+.+..+++.|+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~---------------- 66 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN---------------- 66 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC----------------
Confidence 5799999999999999999999999999887642223489999999999999999999999886
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
+++++|||||||.+|..++.++++.+|++|+|||+.+|+..||+.+|+.+...++|+++|+||||+. +++++++.+
T Consensus 67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~----~a~~~~vl~ 142 (607)
T PRK10218 67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP----GARPDWVVD 142 (607)
T ss_pred CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC----CCchhHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 887666655
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+.+..+... . ....-+|.++|+.+||+-. +...
T Consensus 143 ei~~l~~~l~~~-----~--------~~~~~PVi~~SA~~G~~~~--------------~~~~----------------- 178 (607)
T PRK10218 143 QVFDLFVNLDAT-----D--------EQLDFPIVYASALNGIAGL--------------DHED----------------- 178 (607)
T ss_pred HHHHHHhccCcc-----c--------cccCCCEEEeEhhcCcccC--------------Cccc-----------------
Confidence 555544322110 0 0111256778887776320 0000
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
. .+ .+.+|||+|
T Consensus 179 ------------------------------------~----~~----------------------------~i~~Lld~I 190 (607)
T PRK10218 179 ------------------------------------M----AE----------------------------DMTPLYQAI 190 (607)
T ss_pred ------------------------------------c----cc----------------------------chHHHHHHH
Confidence 0 00 025889999
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003169 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
++++|+|. +++++||.++|||++.+++.|+ ++++|||||+|++||.|++...+
T Consensus 191 i~~iP~P~-------------------------~~~~~Pl~~~V~k~~~d~~~G~-i~~gRV~sG~lk~Gd~v~~~~~~- 243 (607)
T PRK10218 191 VDHVPAPD-------------------------VDLDGPFQMQISQLDYNSYVGV-IGIGRIKRGKVKPNQQVTIIDSE- 243 (607)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeEecCCCcE-EEEEEEEeCcCcCCCEEEEecCC-
Confidence 99999993 2357899999999999999997 99999999999999999975321
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003169 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep 495 (843)
+. ...+||++||.+.|.++.++++|.|||||++.|++++ .+| |||+... +.++++++++ +|++++++.|
T Consensus 244 --~~---~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~--~~GdTl~~~~~--~~~l~~~~~~-~P~~~~~~~~ 313 (607)
T PRK10218 244 --GK---TRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL--NISDTVCDTQN--VEALPALSVD-EPTVSMFFCV 313 (607)
T ss_pred --Cc---EeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc--ccCcEEecCCC--cccCCCCCCC-CCeEEEEEEe
Confidence 11 1237999999999999999999999999999999997 788 9998877 6778888886 9999999999
Q ss_pred CC---CCChhHHHH---HHHHHHh---cCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeE
Q 003169 496 KV---ASDLPKLVE---GLKRLAK---SDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 496 ~~---~~d~~kL~~---aL~~L~~---eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
.+ ..|..|+.. +|++|.+ +||+|+|+.+ +++|++|+|+|||||+|+++||+++ |+++.+++|+|+||
T Consensus 314 ~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrre---g~e~~~~~P~V~yr 390 (607)
T PRK10218 314 NTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRRE---GFELAVSRPKVIFR 390 (607)
T ss_pred CCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhC---CceEEEeCCEEEEE
Confidence 99 889999855 5666666 9999999988 8999999999999999999999997 99999999999999
Q ss_pred eccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCc
Q 003169 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 645 (843)
|| + |
T Consensus 391 et--~------------------------------------------------------------------------g-- 394 (607)
T PRK10218 391 EI--D------------------------------------------------------------------------G-- 394 (607)
T ss_pred EE--C------------------------------------------------------------------------C--
Confidence 97 1 0
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCee
Q 003169 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~L 725 (843)
. .
T Consensus 395 --------~----------------------------------------------------------------------k 396 (607)
T PRK10218 395 --------R----------------------------------------------------------------------K 396 (607)
T ss_pred --------E----------------------------------------------------------------------E
Confidence 0 0
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeec
Q 003169 726 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||++++|.||++++|+|+++|++|||+++++++.++ +++.|+|.+|+++++||.++|||+|+|+|+|+++|+||+++
T Consensus 397 lEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~-~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~ 475 (607)
T PRK10218 397 QEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGK-GRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDV 475 (607)
T ss_pred eCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCC-CEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCC
Confidence 69999999999999999999999999999999997543 68999999999999999999999999999999999999999
Q ss_pred C-CC
Q 003169 806 S-SD 808 (843)
Q Consensus 806 ~-~d 808 (843)
| |+
T Consensus 476 ~~g~ 479 (607)
T PRK10218 476 RPGE 479 (607)
T ss_pred CCCC
Confidence 9 55
No 18
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.4e-74 Score=671.67 Aligned_cols=471 Identities=27% Similarity=0.425 Sum_probs=385.8
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
...+++|||+|+||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|++++.+++.|.. .
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~-~~~lD~~~~ErerGiTi~~~~v~~~~~~-----------~ 69 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMK-AQVLDSMDLERERGITIKAQAVRLNYKA-----------K 69 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccc-cccccCchHHhhcCCcccccEEEEEEEc-----------c
Confidence 345789999999999999999999999999998875444 5789999999999999999999988851 1
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~ 173 (843)
+++++.+||||||||.||..++.++++.+|++|+|||+++|++.||...|..+...++|+++|+||+|+. ++++++
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~----~a~~~~ 145 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLP----AADPER 145 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----cccHHH
Confidence 3357899999999999999999999999999999999999999999999998888899999999999987 665333
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCC
Q 003169 174 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
.. +++...+.. .+ ..+...|+..|+
T Consensus 146 v~-------~ei~~~lg~-----------~~--~~vi~iSAktG~----------------------------------- 170 (600)
T PRK05433 146 VK-------QEIEDVIGI-----------DA--SDAVLVSAKTGI----------------------------------- 170 (600)
T ss_pred HH-------HHHHHHhCC-----------Cc--ceEEEEecCCCC-----------------------------------
Confidence 22 222211110 00 012233331110
Q ss_pred CCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHH
Q 003169 254 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 333 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (843)
.+..||
T Consensus 171 --------------------------------------------------------------------------GI~~Ll 176 (600)
T PRK05433 171 --------------------------------------------------------------------------GIEEVL 176 (600)
T ss_pred --------------------------------------------------------------------------CHHHHH
Confidence 024678
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003169 334 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 413 (843)
Q Consensus 334 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 413 (843)
+++++++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|+++.
T Consensus 177 ~~I~~~lp~P~~-------------------------~~~~pl~~~Vfd~~~d~~~G~-v~~~rV~sG~Lk~Gd~i~~~~ 230 (600)
T PRK05433 177 EAIVERIPPPKG-------------------------DPDAPLKALIFDSWYDNYRGV-VVLVRVVDGTLKKGDKIKMMS 230 (600)
T ss_pred HHHHHhCccccC-------------------------CCCCCceEEEEEEEecCCCce-EEEEEEEcCEEecCCEEEEec
Confidence 888889999831 356899999999999999997 999999999999999999754
Q ss_pred CCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe-cccc-ccccce-eeecCCCCCcccccccccCCCceEE
Q 003169 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQ-YITKNA-TLTNEKEVDAHPIRAMKFSVSPVVR 490 (843)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl~~-~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~ 490 (843)
. +. .++|.+|+.+.+ +..+++++.||||+++. |+++ ..+++| ||++...+...+++++.++ +|+++
T Consensus 231 ~----~~-----~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~ 299 (600)
T PRK05433 231 T----GK-----EYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEV-KPMVF 299 (600)
T ss_pred C----Cc-----eEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCC-CcEEE
Confidence 2 22 279999996655 88999999999998885 4432 113788 9988775111467788776 99999
Q ss_pred EEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEe-----chhhHHHHHHHHHHhhccCCeeEEEcCCeEeeE
Q 003169 491 VAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAG-----AGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 491 ~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g-----~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
++|+|.+.+|.++|.+||++|.+|||||.++ .+|+|.++.| ||+|||||+++||+++| |+++.+++|.|+||
T Consensus 300 ~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~-~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~--~~~v~~~~P~V~Yr 376 (600)
T PRK05433 300 AGLYPVDSDDYEDLRDALEKLQLNDASLTYE-PETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYE 376 (600)
T ss_pred EEEEECCccCHHHHHHHHHHHHHhCCeEEEE-ecCCcceecceEeecHHHHHHHHHHHHHHHhh--CceEEEecCEEEEE
Confidence 9999999999999999999999999999997 6899999999 99999999999999999 99999999999999
Q ss_pred eccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCc
Q 003169 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 645 (843)
|||++.. . +.+
T Consensus 377 eti~~g~-----------~----~~~------------------------------------------------------ 387 (600)
T PRK05433 377 VTLTDGE-----------V----IEV------------------------------------------------------ 387 (600)
T ss_pred EEEeCCc-----------E----EEE------------------------------------------------------
Confidence 9987521 0 000
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCee
Q 003169 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~L 725 (843)
.| | .|+| |+++++ .|
T Consensus 388 --~~--------------------------p-~~~p---------------ds~~~~---------------------~l 402 (600)
T PRK05433 388 --DN--------------------------P-SKLP---------------DPGKIE---------------------EI 402 (600)
T ss_pred --EC--------------------------c-ccCC---------------Cccccc---------------------eE
Confidence 00 1 1222 333321 79
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceee
Q 003169 726 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
|||||+++|.+|++|+|+|+++|++|||++++++..+ ++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++
T Consensus 403 lEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 480 (600)
T PRK05433 403 EEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRE 480 (600)
T ss_pred ECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCccc
Confidence 9999999999999999999999999999999999865 47899999999999 99999999999999999999999998
Q ss_pred c
Q 003169 805 M 805 (843)
Q Consensus 805 v 805 (843)
.
T Consensus 481 ~ 481 (600)
T PRK05433 481 S 481 (600)
T ss_pred c
Confidence 5
No 19
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=3.1e-73 Score=663.05 Aligned_cols=465 Identities=28% Similarity=0.427 Sum_probs=381.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
++|||+++||+|||||||+++|++.+|.+++...+ .+++|+.++|++||+|+.++.+++.|.. .+++.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~-~~~~D~~~~ErerGiTi~~~~v~~~~~~-----------~~g~~ 69 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMR-EQVLDSMDLERERGITIKAQAVRLNYKA-----------KDGET 69 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccccc-ccccCCChHHHhcCCCeeeeEEEEEEEc-----------CCCCE
Confidence 69999999999999999999999999998764344 4789999999999999999999888851 12346
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
+.++|||||||.+|..++.++++.||++|+|+|+++|++.||...|..+...++|+++|+||+|+. +.++++..+.
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~----~~~~~~~~~e 145 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLP----SADPERVKKE 145 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCC----ccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999988888899999999999987 6553332222
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCce
Q 003169 178 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+ ...+.. .+ ..+...|+..|
T Consensus 146 l-------~~~lg~-----------~~--~~vi~vSAktG---------------------------------------- 165 (595)
T TIGR01393 146 I-------EEVIGL-----------DA--SEAILASAKTG---------------------------------------- 165 (595)
T ss_pred H-------HHHhCC-----------Cc--ceEEEeeccCC----------------------------------------
Confidence 2 111110 00 01222233111
Q ss_pred eecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 003169 258 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMI 337 (843)
Q Consensus 258 ~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (843)
. .++.||+.++
T Consensus 166 ---------------------------------------------~------------------------GI~~Lle~I~ 176 (595)
T TIGR01393 166 ---------------------------------------------I------------------------GIEEILEAIV 176 (595)
T ss_pred ---------------------------------------------C------------------------CHHHHHHHHH
Confidence 0 0246788888
Q ss_pred hcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCC
Q 003169 338 FHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYV 417 (843)
Q Consensus 338 ~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~ 417 (843)
+++|+|.. ++++|+.|+|||++.+++.|. ++++||++|+|++||.|+++..
T Consensus 177 ~~lp~p~~-------------------------~~~~pl~~~V~~~~~d~~~G~-v~~~rV~sG~lk~Gd~v~~~~~--- 227 (595)
T TIGR01393 177 KRVPPPKG-------------------------DPDAPLKALIFDSHYDNYRGV-VALVRVFEGTIKPGDKIRFMST--- 227 (595)
T ss_pred HhCCCCCC-------------------------CCCCCeEEEEEEEEEeCCCcE-EEEEEEECCEEecCCEEEEecC---
Confidence 89999831 356899999999999999997 9999999999999999997542
Q ss_pred CCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe-cc---ccccccce-eeecCCCCCcccccccccCCCceEEEE
Q 003169 418 PGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GL---DQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVA 492 (843)
Q Consensus 418 ~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl---~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~a 492 (843)
+.. ++|.+|+.+.+.. .+++++.||||+++. |+ +++ ++| ||++...+...+++++.++ +|+++++
T Consensus 228 -~~~-----~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~--~~Gdtl~~~~~~~~~~l~~~~~~-~P~v~~~ 297 (595)
T TIGR01393 228 -GKE-----YEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDV--RVGDTITHVKNPAKEPLPGFKEV-KPMVFAG 297 (595)
T ss_pred -CCe-----eEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCcc--CCCCEEECCCCccccCCCCCcCC-CcEEEEE
Confidence 222 7999999776665 999999999998885 44 444 788 9988765111467788776 9999999
Q ss_pred EEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEE-----echhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEec
Q 003169 493 VQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIA-----GAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 493 Iep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~-----g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
|+|.+.+|.++|.+||++|.+|||||.++. +|+|.++. |||+|||||+++||+++| |+++.+++|+|+||||
T Consensus 298 i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~-e~~~~l~~g~r~g~lG~lHlei~~erL~re~--~~~v~~~~P~V~Yret 374 (595)
T TIGR01393 298 LYPIDTEDYEDLRDALEKLKLNDASLTYEP-ESSPALGFGFRCGFLGLLHMEIIQERLEREF--NLDLITTAPSVIYRVY 374 (595)
T ss_pred EEECCcccHHHHHHHHHHHhccCCeEEEEe-cCCcccccccEEeeeeHHHHHHHHHHHHHHh--CCeeEEecCEEEEEEE
Confidence 999999999999999999999999999975 78887777 499999999999999999 9999999999999999
Q ss_pred cccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCceE
Q 003169 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~ 647 (843)
|.+.. ++++
T Consensus 375 i~~g~---------------~~~~-------------------------------------------------------- 383 (595)
T TIGR01393 375 LTNGE---------------VIEV-------------------------------------------------------- 383 (595)
T ss_pred ecCCc---------------EEEE--------------------------------------------------------
Confidence 87421 0111
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeee
Q 003169 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlE 727 (843)
.| | .|+|+.++ -|.|||
T Consensus 384 ~~--------------------------p-~~~p~~~~------------------------------------~~~llE 400 (595)
T TIGR01393 384 DN--------------------------P-SDLPDPGK------------------------------------IEHVEE 400 (595)
T ss_pred EC--------------------------c-ccCCCccc------------------------------------ccceeC
Confidence 00 1 25555431 278999
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceee
Q 003169 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
|||+++|.+|++|+|+|+++|++|||++++++..++ ++..|+|.+|++|+ ++|.++|||+|+|.|+|.++|+||++
T Consensus 401 P~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~-~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 401 PYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDP-NRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRP 477 (595)
T ss_pred CeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCC-CeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCccc
Confidence 999999999999999999999999999999997543 47899999999997 99999999999999999999999997
No 20
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-67 Score=553.11 Aligned_cols=466 Identities=25% Similarity=0.439 Sum_probs=402.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..+|||||++|+|||||||++.||..+|.......-.-++||+...|++|||||-+....+.|+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~---------------- 66 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN---------------- 66 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC----------------
Confidence 5699999999999999999999999999988743333579999999999999999999999996
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
+++|||+|||||.||-+|+++.+...|+++|+|||.+|+.+||+.+++.|.+.+.++|+|+||+||+ ++.|+++..
T Consensus 67 ~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp----~Arp~~Vvd 142 (603)
T COG1217 67 GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRP----DARPDEVVD 142 (603)
T ss_pred CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCC----CCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999988877
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
..-+++-++.+--.+ ..-++.++|+..||+-.-. ..
T Consensus 143 ~vfDLf~~L~A~deQ-------------LdFPivYAS~~~G~a~~~~-----------------------------~~-- 178 (603)
T COG1217 143 EVFDLFVELGATDEQ-------------LDFPIVYASARNGTASLDP-----------------------------ED-- 178 (603)
T ss_pred HHHHHHHHhCCChhh-------------CCCcEEEeeccCceeccCc-----------------------------cc--
Confidence 666665555433222 1126899999988854210 00
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
. ++ + .++|+++|
T Consensus 179 -------~-------------------------~~------------~------------------------m~pLfe~I 190 (603)
T COG1217 179 -------E-------------------------AD------------D------------------------MAPLFETI 190 (603)
T ss_pred -------c-------------------------cc------------c------------------------hhHHHHHH
Confidence 0 00 0 16899999
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003169 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
+++.|+|. .|.++||.++|+.+..+++.|+ ++.+||++|++|+|+.|.++..+
T Consensus 191 ~~hvp~P~-------------------------~~~d~PlQ~qvt~Ldyn~y~Gr-IgigRi~~G~vk~~q~V~~i~~~- 243 (603)
T COG1217 191 LDHVPAPK-------------------------GDLDEPLQMQVTQLDYNSYVGR-IGIGRIFRGTVKPNQQVALIKSD- 243 (603)
T ss_pred HHhCCCCC-------------------------CCCCCCeEEEEEeeccccccce-eEEEEEecCcccCCCeEEEEcCC-
Confidence 99999993 2568999999999999999998 99999999999999999988633
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCCCcccccccccCCCceEEEEEEe
Q 003169 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQC 495 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep 495 (843)
+.. ...||++++-+.|-++.++++|.||||+||+|+.+. ..| |+|++.+ +.+++.+... +|.+++.+-.
T Consensus 244 --g~~---~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~--~igdTi~d~~~--~~aLp~l~iD-ePTlsMtf~v 313 (603)
T COG1217 244 --GTT---ENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI--NIGDTICDPDN--PEALPALSVD-EPTLSMTFSV 313 (603)
T ss_pred --CcE---EeeEEEeeeeccceeeeecccccccCEEEEcCcccc--cccccccCCCC--ccCCCCcccC-CCceEEEEEe
Confidence 222 247999999999999999999999999999999997 567 9999988 7778888776 8888888754
Q ss_pred CC---------CCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeE
Q 003169 496 KV---------ASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFR 565 (843)
Q Consensus 496 ~~---------~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yr 565 (843)
.+ .-...++.+.|.+-.+.+-+|+|+.- +-..+.++|-|||||-|+++.+||+ |.|+.+|.|+|.||
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRRE---GfEl~VsrP~Vi~k 390 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRRE---GFELQVSRPEVIIK 390 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhc---ceEEEecCceEEEE
Confidence 42 23456789999999999999999865 5589999999999999999999996 99999999999999
Q ss_pred eccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCc
Q 003169 566 ETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPN 645 (843)
Q Consensus 566 ETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n 645 (843)
| |.+
T Consensus 391 e-idG--------------------------------------------------------------------------- 394 (603)
T COG1217 391 E-IDG--------------------------------------------------------------------------- 394 (603)
T ss_pred e-cCC---------------------------------------------------------------------------
Confidence 8 211
Q ss_pred eEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCee
Q 003169 646 MVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725 (843)
Q Consensus 646 ~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~L 725 (843)
..
T Consensus 395 ------------------------------------------------------------------------------~~ 396 (603)
T COG1217 395 ------------------------------------------------------------------------------VK 396 (603)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 12
Q ss_pred eeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeec
Q 003169 726 LEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 726 lEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
+||+-.+.|.||+++.|.|+..|..|+|...++.+.+ .+++.+...+|.+-++||.+++-++|+|.|.....|+||+|+
T Consensus 397 ~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g-~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~ 475 (603)
T COG1217 397 CEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDG-KGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPV 475 (603)
T ss_pred cCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCC-CCeEEEEEEccCcceeccchheeeccccceeeeecccccccc
Confidence 6799999999999999999999999999999999864 479999999999999999999999999999999999999999
Q ss_pred CCCC
Q 003169 806 SSDP 809 (843)
Q Consensus 806 ~~d~ 809 (843)
.++.
T Consensus 476 ~g~i 479 (603)
T COG1217 476 KGEI 479 (603)
T ss_pred cccc
Confidence 8853
No 21
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2.2e-66 Score=596.38 Aligned_cols=437 Identities=23% Similarity=0.309 Sum_probs=345.3
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc------CCceEeecCccccccccceeeeeeEEEEEeechhhh
Q 003169 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~------~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
+....++|||+|+||+|||||||+++|++.+|.+...- .|....+|+++.|++||+|+.++..++.|.
T Consensus 4 ~~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------ 77 (526)
T PRK00741 4 AQEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------ 77 (526)
T ss_pred cchhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC------
Confidence 34457799999999999999999999999999886620 122346899999999999999999999986
Q ss_pred hccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccccc
Q 003169 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~ 166 (843)
++++|+||||||.||..++.++++.+|+||+|||+++|+..+++.+|+++...++|+++|+||||+.
T Consensus 78 ----------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~--- 144 (526)
T PRK00741 78 ----------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRD--- 144 (526)
T ss_pred ----------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccc---
Confidence 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCc--cceEEeehhHHHHHhhhcCCCHHHHHHhh
Q 003169 167 LQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGL--HGWAFTLTNFAKMYASKFGVDESKMMERL 244 (843)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~--~g~~~~~~~~a~~~~~~~~i~~~~l~~~~ 244 (843)
++++.++.+.++ ..+.. .+...++|+|.+. .|. +|+.....+.
T Consensus 145 -~a~~~~~l~~i~-------~~l~~-----------~~~p~~~Pig~~~~f~Gv----------------vdl~~~~~~~ 189 (526)
T PRK00741 145 -GREPLELLDEIE-------EVLGI-----------ACAPITWPIGMGKRFKGV----------------YDLYNDEVEL 189 (526)
T ss_pred -ccCHHHHHHHHH-------HHhCC-----------CCeeEEeccccCCceeEE----------------EEeecceeee
Confidence 887554444333 32221 1223367777652 221 3333333333
Q ss_pred ccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHH--------hhHH
Q 003169 245 WGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKEL--------MGKA 316 (843)
Q Consensus 245 w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~--------~~~~ 316 (843)
|.+ ..+ +. .++.+.+++.|+++|++||++ ..+ +|+.. ....
T Consensus 190 ~~~-----~~~--------~~--------------~~~~e~~~~~dd~lle~~l~~--~~~--~~l~~~lel~~~~~~~~ 238 (526)
T PRK00741 190 YQP-----GEG--------HT--------------IQEVEIIKGLDNPELDELLGE--DLA--EQLREELELVQGASNEF 238 (526)
T ss_pred ccc-----CCC--------Cc--------------ceeeeeccCCCHHHHHHHhcc--cHH--HHHHHHHHhhhhcccch
Confidence 310 000 00 022456677788899999876 222 22211 0111
Q ss_pred HHHHHH-Hhhccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeee
Q 003169 317 LMKRVM-QTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIP 385 (843)
Q Consensus 317 l~~~i~-~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~ 385 (843)
..+++. ++++|+ +++|||+|++|+|+|.++... .....+ .+.|++|+|||+.+
T Consensus 239 ~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~---------------~~~~~~-~~~~~~~~VFK~~~ 302 (526)
T PRK00741 239 DLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTD---------------EREVEP-TEEKFSGFVFKIQA 302 (526)
T ss_pred hHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCccccc---------------ceeecC-CCCceEEEEEEEEe
Confidence 234443 678997 799999999999999754321 000112 34679999999984
Q ss_pred ---cCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccc
Q 003169 386 ---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYIT 462 (843)
Q Consensus 386 ---~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~ 462 (843)
+++.|+ ++|+|||||+|++|+.|++ .+++++ +|+++++.++|++++++++|.|||||++.|++++
T Consensus 303 ~m~~~~~gr-lafvRV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-- 370 (526)
T PRK00741 303 NMDPKHRDR-IAFVRVCSGKFEKGMKVRH----VRTGKD-----VRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-- 370 (526)
T ss_pred cCCCCcCce-EEEEEEeccEECCCCEEEe----ccCCce-----EEecceEEEecCCceECceeCCCCEEEEECCCCC--
Confidence 457777 9999999999999999995 444443 7999999999999999999999999999999987
Q ss_pred cce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHH
Q 003169 463 KNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEI 540 (843)
Q Consensus 463 ~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei 540 (843)
++| ||++.+ +..+++++++ +|+++++|+|+++.|.+||.+||++|.+||| +++..+ +|||++|+|||||||||
T Consensus 371 ~~GDTL~~~~---~~~~~~i~~~-~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV 445 (526)
T PRK00741 371 QIGDTFTQGE---KLKFTGIPNF-APELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEV 445 (526)
T ss_pred ccCCCccCCC---ccccCCCCCC-CccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHH
Confidence 889 998754 4567888887 9999999999999999999999999999995 999987 89999999999999999
Q ss_pred HHHHHHhhccCCeeEEEcCCeEeeEeccc
Q 003169 541 CLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 541 ~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
+++||+++| ||+|.+++|+|++-.-|.
T Consensus 446 ~~~RL~~ey--~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 446 VAHRLKNEY--NVEAIYEPVGVATARWVE 472 (526)
T ss_pred HHHHHHHHh--CCEEEEecCCccEEEEEe
Confidence 999999999 999999999999877664
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-65 Score=551.05 Aligned_cols=470 Identities=30% Similarity=0.430 Sum_probs=390.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+++||++|++|+|||||||+++||..+|.++.. .+..+++|..+.|+||||||++..+++.|. +++
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~-~~q~q~LDkl~vERERGITIkaQtasify~-------------~~~ 123 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN-IGQEQVLDKLQVERERGITIKAQTASIFYK-------------DGQ 123 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCC-CchhhhhhhhhhhhhcCcEEEeeeeEEEEE-------------cCC
Confidence 789999999999999999999999999988775 555689999999999999999999999997 245
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
.+.+||||||||+||..|+.+.+..||||+|||||.+|+++||...+..|.+.++.+|.|+||+|++ +++|+.+..
T Consensus 124 ~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp----~adpe~V~~ 199 (650)
T KOG0462|consen 124 SYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP----SADPERVEN 199 (650)
T ss_pred ceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC----CCCHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999 999888766
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+.++. .+. .+.+.|+..||+
T Consensus 200 q~~~lF~~------------------~~~--~~i~vSAK~G~~------------------------------------- 222 (650)
T KOG0462|consen 200 QLFELFDI------------------PPA--EVIYVSAKTGLN------------------------------------- 222 (650)
T ss_pred HHHHHhcC------------------Ccc--ceEEEEeccCcc-------------------------------------
Confidence 55554431 111 355555544430
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
+..+|++|
T Consensus 223 ------------------------------------------------------------------------v~~lL~AI 230 (650)
T KOG0462|consen 223 ------------------------------------------------------------------------VEELLEAI 230 (650)
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 13579999
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003169 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
++.+|+|. ...++||.+++|..+.|.++|. ++++||..|.+++||.|..+.
T Consensus 231 I~rVPpP~-------------------------~~~d~plr~Lifds~yD~y~G~-I~~vrv~~G~vrkGdkV~~~~--- 281 (650)
T KOG0462|consen 231 IRRVPPPK-------------------------GIRDAPLRMLIFDSEYDEYRGV-IALVRVVDGVVRKGDKVQSAA--- 281 (650)
T ss_pred HhhCCCCC-------------------------CCCCcchHHHhhhhhhhhhcce-EEEEEEeeeeeecCCEEEEee---
Confidence 99999993 1357999999999999999998 999999999999999998653
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEec-cccccccce-eeecCCC-CCcccccccccCCCceEEEEE
Q 003169 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG-LDQYITKNA-TLTNEKE-VDAHPIRAMKFSVSPVVRVAV 493 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~g-l~~~~~~tg-TL~~~~~-~~~~~~~~~~~~~~Pv~~~aI 493 (843)
++++ .+.+.-.++.+......++....+|+|++.-| +++. ..| |+++... +...+++..+. +.|++++..
T Consensus 282 -t~~~---yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea--~IGdTi~~~~~~~~v~tl~~~~~-~~pMvFvg~ 354 (650)
T KOG0462|consen 282 -TGKS---YEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEA--QIGDTIAHKSVTKAVETLPGFEP-TKPMVFVGL 354 (650)
T ss_pred -cCcc---eEeEEeEEeccCceeeeeecccccceeEecccccccc--cccceeeecccCcccCcCCCCCC-CcceEEecc
Confidence 2222 34666677777777777788888899988877 7776 678 9987652 11344555654 499999999
Q ss_pred EeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCC----ceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEeccc
Q 003169 494 QCKVASDLPKLVEGLKRLAKSDPMVVCSMEESG----EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL 569 (843)
Q Consensus 494 ep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etg----e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrETi~ 569 (843)
.|.+.+|...|.+++.+|..+|+++.+..+.++ -+.+++.|.|||+|.++||+++| |.++.+++|.|+||=-..
T Consensus 355 fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Ey--g~elivt~PtV~Yr~~~~ 432 (650)
T KOG0462|consen 355 FPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREY--GAELIVTPPTVPYRVVYS 432 (650)
T ss_pred ccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhc--CceeeecCCcceEEEEec
Confidence 999999999999999999999999999887544 57999999999999999999999 999999999999985322
Q ss_pred cccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCceEEe
Q 003169 570 EKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMVVD 649 (843)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~~~ 649 (843)
... . +.+..|. .|
T Consensus 433 ~~~-----------~-------------------------------------------------~~i~np~-----~f-- 445 (650)
T KOG0462|consen 433 NGD-----------E-------------------------------------------------ILISNPA-----LF-- 445 (650)
T ss_pred CCc-----------e-------------------------------------------------eeecChh-----hC--
Confidence 210 0 1111111 11
Q ss_pred cccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeece
Q 003169 650 MCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPV 729 (843)
Q Consensus 650 ~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi 729 (843)
| |..... -.|||+
T Consensus 446 -------------------------------p---------------~~~~v~---------------------~~lEP~ 458 (650)
T KOG0462|consen 446 -------------------------------P---------------DPSDVK---------------------EFLEPY 458 (650)
T ss_pred -------------------------------C---------------Ccccch---------------------hhcCce
Confidence 0 111111 149999
Q ss_pred EEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcC-ccHHHhhhCCCceeeeeEecceeecCCC
Q 003169 730 YLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFG-FSSTLRAATSGQAFPQCVFDHWDMMSSD 808 (843)
Q Consensus 730 ~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~v~~d 808 (843)
...+|.+|+||+|.|+..++.|||...++...++ +...++-++|++|+.| |...|.|.|+|.|+|..+|++|+ ++|
T Consensus 459 v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~-nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sd 535 (650)
T KOG0462|consen 459 VEATIITPDEYVGAVIELCSERRGEQKDMTYIDG-NRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASD 535 (650)
T ss_pred EEEEEECcHHHHHHHHHHHHHhhhheecceeccC-CeEEEEEecChHHHHHHHHHHHhccccceeEEeecccccc--ccc
Confidence 9999999999999999999999999999998876 4889999999999998 99999999999999999999999 444
No 23
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=3.4e-64 Score=578.47 Aligned_cols=433 Identities=21% Similarity=0.310 Sum_probs=329.7
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--------eEeecCccccccccceeeeeeEEEEEeech
Q 003169 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTD 83 (843)
Q Consensus 12 ~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~ 83 (843)
++....++|||+|+||+|+|||||+++|++.+|.+.. .|. .+++|+.+.|++||+|+.++...+.|.
T Consensus 4 ~~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~--~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~--- 78 (527)
T TIGR00503 4 LLKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQT--AGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR--- 78 (527)
T ss_pred hhhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccc--cceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC---
Confidence 4556678999999999999999999999999998865 222 357999999999999999999999886
Q ss_pred hhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 84 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++++||||||||.+|..++.++++.+|++|+|||+++|+..+++.+|+.+...++|+++|+||||+.
T Consensus 79 -------------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 -------------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred -------------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 8999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred cccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHH
Q 003169 164 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMM 241 (843)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~ 241 (843)
+++++++.+.+++.+. . .+...++|++.+ +.|. +|.....
T Consensus 146 ----~~~~~~ll~~i~~~l~-------~-----------~~~~~~~PIg~~~~f~gv----------------~d~l~~~ 187 (527)
T TIGR00503 146 ----IRDPLELLDEVENELK-------I-----------NCAPITWPIGCGKLFKGV----------------YHLLKDE 187 (527)
T ss_pred ----CCCHHHHHHHHHHHhC-------C-----------CCccEEEEecCCCceeEE----------------EEcccCc
Confidence 8886655544443322 1 122235666544 1111 2222222
Q ss_pred HhhccccccCCC-CCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHH------HHhcCCcCCHHHHHHhh
Q 003169 242 ERLWGENFFDPA-TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPM------LQKLGVTMKSEEKELMG 314 (843)
Q Consensus 242 ~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~------l~~~~~~l~~~el~~~~ 314 (843)
.++ |... ++.....+. ....-.| +.+.++. .+.++++ +++.+.+++.
T Consensus 188 ~~~-----y~~~~~~~~~~~~~---------~~~~~~~---~~e~~~~--~~~~~~~~~~le~~~~~~~~~~~------- 241 (527)
T TIGR00503 188 TYL-----YQSGTGGTIQAVRQ---------VKGLNNP---ALDSAVG--SDLAQQLRDELELVEGASNEFDL------- 241 (527)
T ss_pred cee-----cCccCCCceeEeeh---------hccCCCh---hhhhhhh--HHHHHHHHHHHHHHhhhccccCH-------
Confidence 222 2211 111111000 0000000 0111111 1122222 2221122221
Q ss_pred HHHHHHHHHhhccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEee
Q 003169 315 KALMKRVMQTWLPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMI 384 (843)
Q Consensus 315 ~~l~~~i~~~~~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~ 384 (843)
++.+ .++++|+ ++.|||+|++|+|||.++.... ....+ .++|++|+|||+.
T Consensus 242 ~~~~---~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------------~~~~~-~~~~~~~~VFK~~ 302 (527)
T TIGR00503 242 AAFH---GGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------------RTVEP-TEEKFSGFVFKIQ 302 (527)
T ss_pred HHHh---cCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------------eecCC-CCCCeeEEEEEEE
Confidence 1111 2578887 8999999999999997543110 01122 4578999999998
Q ss_pred e--c-CCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEecccccc
Q 003169 385 P--A-SDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYI 461 (843)
Q Consensus 385 ~--~-~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~ 461 (843)
. + +++|+ ++|+|||||+|++|++|++ .+++++ +|+++++.++|++++++++|.|||||++.|++++
T Consensus 303 ~~mdp~~~gr-iaf~RV~sG~l~~g~~v~~----~~~~k~-----~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~- 371 (527)
T TIGR00503 303 ANMDPKHRDR-VAFMRVVSGKYEKGMKLKH----VRTGKD-----VVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI- 371 (527)
T ss_pred eccCcccCce-EEEEEEeeeEEcCCCEEEe----cCCCCc-----EEecchhhhhcCCceEcceeCCCCEEEEECCCCc-
Confidence 8 6 47887 9999999999999999995 444443 7999999999999999999999999999999987
Q ss_pred ccce-eeecCCCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHH
Q 003169 462 TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLE 539 (843)
Q Consensus 462 ~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLe 539 (843)
++| |||+ .. +..+++++++ +|+++++|+|+++.|.+||.+||++|.+||| +++..+ +|+|++|+||||||||
T Consensus 372 -~~GDtl~~-~~--~~~~~~i~~~-~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~Gelhle 445 (527)
T TIGR00503 372 -QIGDTFTQ-GE--KIKFTGIPNF-APELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFD 445 (527)
T ss_pred -ccCCEecC-CC--ceeecCCCCC-CcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHH
Confidence 889 9988 33 5667888886 9999999999999999999999999999998 899988 8999999999999999
Q ss_pred HHHHHHHhhccCCeeEEEcCCeEee
Q 003169 540 ICLKDLQDDFMGGAEIIKSDPVVSF 564 (843)
Q Consensus 540 i~~~rL~~~f~~~v~v~~~~p~V~y 564 (843)
|+++||+++| ||++.+++|+|+.
T Consensus 446 V~~~RL~~ey--~v~v~~~~~~v~~ 468 (527)
T TIGR00503 446 VVVYRLKEEY--NVEARYEPVNVAT 468 (527)
T ss_pred HHHHHHHHHh--CCeEEEeCCCceE
Confidence 9999999999 9999999999984
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-60 Score=505.25 Aligned_cols=471 Identities=28% Similarity=0.423 Sum_probs=383.8
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..++|||.+|++|.|||||||.++|+..+|.++.++.. ..++|+++.|++|||||++..+.+.|.. .+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~-~Q~LDsMdiERERGITIKaq~v~l~Yk~-----------~~ 72 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR-AQVLDSMDIERERGITIKAQAVRLNYKA-----------KD 72 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH-HHhhhhhhhHhhcCceEEeeEEEEEEEe-----------CC
Confidence 45789999999999999999999999999998875433 4689999999999999999999999973 24
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHH
Q 003169 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~ 174 (843)
++.|.+||||||||+||..|+.+++..|.||+|||||+.|++.||..-.-+|...+.-+|-|+||+|++ .++|+.+
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP----~Adperv 148 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP----AADPERV 148 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCC----CCCHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999 9998876
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCC
Q 003169 175 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (843)
.+.+.+++.- ++. ..+..|+..
T Consensus 149 k~eIe~~iGi------------------d~~--dav~~SAKt-------------------------------------- 170 (603)
T COG0481 149 KQEIEDIIGI------------------DAS--DAVLVSAKT-------------------------------------- 170 (603)
T ss_pred HHHHHHHhCC------------------Ccc--hheeEeccc--------------------------------------
Confidence 6655544430 000 111222210
Q ss_pred CceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHH
Q 003169 255 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 334 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (843)
++| +..+|+
T Consensus 171 ---------------------------------------------G~g--------------------------I~~iLe 179 (603)
T COG0481 171 ---------------------------------------------GIG--------------------------IEDVLE 179 (603)
T ss_pred ---------------------------------------------CCC--------------------------HHHHHH
Confidence 011 256899
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCC
Q 003169 335 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 414 (843)
Q Consensus 335 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 414 (843)
+|++.+|+|. .++++|+-|++|..+.|++.|- ++++||+.|++++||.+.++..
T Consensus 180 ~Iv~~iP~P~-------------------------g~~~~pLkALifDS~yD~Y~GV-v~~vRi~dG~ik~gdki~~m~t 233 (603)
T COG0481 180 AIVEKIPPPK-------------------------GDPDAPLKALIFDSWYDNYLGV-VVLVRIFDGTLKKGDKIRMMST 233 (603)
T ss_pred HHHhhCCCCC-------------------------CCCCCcceEEEEeccccccceE-EEEEEEeeceecCCCEEEEEec
Confidence 9999999993 2578999999999999999997 9999999999999999998753
Q ss_pred CCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe-cccccc-ccce-eeecCCCCCcccccccccCCCceEEE
Q 003169 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQYI-TKNA-TLTNEKEVDAHPIRAMKFSVSPVVRV 491 (843)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl~~~~-~~tg-TL~~~~~~~~~~~~~~~~~~~Pv~~~ 491 (843)
+++ ..|.++.++.- .....+++.||+++-+. |+++.. ++.| |++...++...++++++.. .|++++
T Consensus 234 ----g~~-----y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~-~P~Vf~ 302 (603)
T COG0481 234 ----GKE-----YEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEV-KPMVFA 302 (603)
T ss_pred ----CCE-----EEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcC-CceEEE
Confidence 222 57777777665 77889999999997653 554431 2567 8775444335678888765 999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCC---C-ceEEEechhhHHHHHHHHHHhhccCCeeEEEcCCeEeeEec
Q 003169 492 AVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEES---G-EHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRET 567 (843)
Q Consensus 492 aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~et---g-e~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~p~V~yrET 567 (843)
.+.|.+..|.+.|.+||.||...|-+|.++.+.| | -+-.+.+|-|||||+.+||+|+| ++++....|.|.|+=.
T Consensus 303 GlyPid~~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf--~ldlI~TaPsV~Y~v~ 380 (603)
T COG0481 303 GLYPVDSDDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF--DLDLITTAPSVVYKVE 380 (603)
T ss_pred eecccChhHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhh--CcceEecCCceEEEEE
Confidence 9999999999999999999999999999986532 2 56788899999999999999999 9999999999999865
Q ss_pred cccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEeccCCCCCceE
Q 003169 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETIGPNMV 647 (843)
Q Consensus 568 i~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p~~~g~n~~ 647 (843)
.+...+. ..-.|.
T Consensus 381 ~~~g~~~------------------------------------------------------------~i~NPs------- 393 (603)
T COG0481 381 LTDGEEI------------------------------------------------------------EVDNPS------- 393 (603)
T ss_pred EcCCcEE------------------------------------------------------------EecChH-------
Confidence 4332100 000110
Q ss_pred EecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeee
Q 003169 648 VDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLE 727 (843)
Q Consensus 648 ~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlE 727 (843)
.+| |...+ -.+.|
T Consensus 394 -------------------------------~~P---------------~~~~I---------------------~~i~E 406 (603)
T COG0481 394 -------------------------------DLP---------------DPNKI---------------------EEIEE 406 (603)
T ss_pred -------------------------------hCC---------------Chhhh---------------------heeeC
Confidence 000 00000 03689
Q ss_pred ceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceee
Q 003169 728 PVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 728 Pi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
|+.+++|.+|++|+|.|+...+.+||.-.+++..+. +...+.-.+|++|. ++|-..|.|.|+|.|+|..+|.+|++
T Consensus 407 P~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~-~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~ 483 (603)
T COG0481 407 PYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQ-NRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRE 483 (603)
T ss_pred ceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecC-ceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccc
Confidence 999999999999999999999999999999987653 68899999999997 59999999999999999999999986
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-52 Score=440.29 Aligned_cols=434 Identities=24% Similarity=0.336 Sum_probs=316.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--------eEeecCccccccccceeeeeeEEEEEeechhhhh
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
..+-|+.||+.|+|+|||||++.||...|+|.. +|. ...+|++..|++|||||.+++.+|.|.
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~--AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~------- 79 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQE--AGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA------- 79 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhh--cceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-------
Confidence 456789999999999999999999999888866 443 357899999999999999999999986
Q ss_pred ccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccc
Q 003169 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~ 167 (843)
++.+||+|||||.||...+.+.|..+|.||+||||..|+++||+.+++-|+..++|++=|||||||.
T Consensus 80 ---------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~---- 146 (528)
T COG4108 80 ---------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDRE---- 146 (528)
T ss_pred ---------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccc
Q 003169 168 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGE 247 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~ 247 (843)
+-+|-|+...+.+.+. +.+.+.++|+|.| +.|...|.-..+ . -.+
T Consensus 147 ~rdP~ELLdEiE~~L~------------------i~~~PitWPIG~g--------k~F~Gvy~l~~~----~--v~~--- 191 (528)
T COG4108 147 GRDPLELLDEIEEELG------------------IQCAPITWPIGMG--------KDFKGVYHLYND----E--VEL--- 191 (528)
T ss_pred cCChHHHHHHHHHHhC------------------cceecccccccCC--------cccceeeeeccC----E--EEE---
Confidence 8888876554444332 1233447888877 233333311100 0 011
Q ss_pred cccCCC-CC-ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhh
Q 003169 248 NFFDPA-TR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 325 (843)
Q Consensus 248 ~~~~~~-~~-~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (843)
|... +. ........+- ..+...+.+-++.| +.+.+ +-+++... +-+++.+.. +. ...
T Consensus 192 --y~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~---~~~~e-e~EL~~~a----~~~Fd~~~f-------l~---G~~ 250 (528)
T COG4108 192 --YESGHTDQERRADIVKGL-DNPELDALLGEDLA---EQLRE-ELELVQGA----GNEFDLEAF-------LA---GEL 250 (528)
T ss_pred --eccCCCccccccccccCC-CChhHHhhhchHHH---HHHHH-HHHHHHhh----ccccCHHHH-------hc---CCc
Confidence 1111 00 0000000000 00111111111111 11110 01111111 111111111 11 344
Q ss_pred ccc----------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccC-CCCeEEEEEEeeecCCCCc--e
Q 003169 326 LPA----------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDP-EGPLMLYVSKMIPASDKGR--F 392 (843)
Q Consensus 326 ~P~----------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~p~~a~VfK~~~~~~~g~--~ 392 (843)
.|| |+.+||+++++.|+|..++... +...+ +..+.+||||+....+..+ +
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-----------------~~v~p~e~kfsGFVFKIQANMDp~HRDR 313 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-----------------REVEPTEDKFSGFVFKIQANMDPKHRDR 313 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-----------------CcccCCCCccceEEEEEEcCCCcccccc
Confidence 554 8999999999999997543210 01122 3349999999987544332 3
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCC
Q 003169 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~ 471 (843)
++|+||.||++.+|+.+. ..++|++ .+++.-..+++++++.+++|.||||+++..-... +.| |++...
T Consensus 314 IAFmRv~SGkferGMkv~----h~rtGK~-----~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~--~IGDT~t~Ge 382 (528)
T COG4108 314 IAFMRVCSGKFERGMKVT----HVRTGKD-----VKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTI--QIGDTFTEGE 382 (528)
T ss_pred eeEEEeccccccCCceee----eeecCCc-----eEecchHhhhhhhhhhhhhccCCCeEeccCCCce--eecceeecCc
Confidence 999999999999999998 4556654 7999999999999999999999999999764444 667 888763
Q ss_pred CCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhHHHHHHHHHHhhccC
Q 003169 472 EVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMG 551 (843)
Q Consensus 472 ~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElHLei~~~rL~~~f~~ 551 (843)
...+.+++.. .|-++..|..+++....+|.+||.+|++|--.-.+....+.++|+...|.||+||+.+||+++|
T Consensus 383 ---~l~f~giP~F-aPE~frrvr~kd~~K~Kql~Kgl~QL~eEGavQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY-- 456 (528)
T COG4108 383 ---KLKFTGIPNF-APELFRRVRLKDPLKQKQLKKGLEQLAEEGAVQVFKPLDGNDLILGAVGQLQFEVVQARLKNEY-- 456 (528)
T ss_pred ---eeeecCCCCC-CHHHHHHHhcCChHHHHHHHHHHHHHhhcCeeEEEecCCCCCceEEeeeeeehHHHHHHHHhhh--
Confidence 5778888887 8999999999999999999999999999986655555578999999999999999999999999
Q ss_pred CeeEEEcCCe
Q 003169 552 GAEIIKSDPV 561 (843)
Q Consensus 552 ~v~v~~~~p~ 561 (843)
+|++.+.+..
T Consensus 457 ~ve~~~e~~~ 466 (528)
T COG4108 457 NVEAVFEPVN 466 (528)
T ss_pred CCeEEEeecc
Confidence 9999986543
No 26
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=1.2e-39 Score=336.15 Aligned_cols=204 Identities=62% Similarity=1.019 Sum_probs=182.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|||+++||+|||||||+++|++.+|.+.+...|..+++|+.++|++||+||+++.+++.|..... ...+++++.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~~~~~~~ 74 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKADGNEYL 74 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------cccCCCceE
Confidence 89999999999999999999999999887767788999999999999999999999999863110 012345789
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHHH
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQ 179 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~~ 179 (843)
++|||||||.+|..++..+++.+|+|++|||+++|+..+|+.+++++...++|+++|+||||+.+.++..+++++|.+++
T Consensus 75 i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~ 154 (222)
T cd01885 75 INLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLA 154 (222)
T ss_pred EEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhccCCCC-----CCeeeeeccceeeeccCccceEEeehhHHHHH
Q 003169 180 KVIENANVIMATYEDPLL-----GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 180 ~~~~~~~~~l~~~~~~~~-----~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
++++++|.++..+..+.. +...|+|.+|||.|+|+.+||+|++++|+++|
T Consensus 155 ~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~ 209 (222)
T cd01885 155 RIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIY 209 (222)
T ss_pred HHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchH
Confidence 999999999987743211 34678999999999999999999998877665
No 27
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=100.00 E-value=5.5e-38 Score=311.04 Aligned_cols=174 Identities=47% Similarity=0.849 Sum_probs=165.9
Q ss_pred CCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEec
Q 003169 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (843)
+|.|+|||||.+.+...+..+++|+|+++|++++||++++.+.|++|.++..++.+.+.++|+.+||||..++++||+||
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~iw~fg 80 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSIWAFG 80 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCeEEEc
Confidence 69999999999998878889999999999999999999999999999998888899999999999999999999999999
Q ss_pred cCCCCCceEEeccc----CccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHH
Q 003169 639 PETIGPNMVVDMCK----GVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 639 p~~~g~n~~~~~~~----g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~ 714 (843)
|++.|+|+|+|.+. +.+++++++++|++||++|+++|||||+||+||+|+|.|+.+|.|+.+++.+|+++|+|+||
T Consensus 81 P~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aar~a~ 160 (178)
T cd01683 81 PDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTARRAC 160 (178)
T ss_pred CCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHHHHHH
Confidence 99899999999987 55688999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHhhcCCeeeeceEEE
Q 003169 715 YASQLTAKPRLLEPVYLV 732 (843)
Q Consensus 715 ~~a~~~a~p~LlEPi~~~ 732 (843)
++|+++|+|+||||||.|
T Consensus 161 ~~a~l~a~prLLEPim~v 178 (178)
T cd01683 161 YSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHCCCEEEcceEeC
Confidence 999999999999999975
No 28
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.5e-36 Score=322.95 Aligned_cols=255 Identities=31% Similarity=0.448 Sum_probs=200.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
||+++||+|||||||+++|++.+|.+.+. ..+..+++|+.++|++||+|++++..++.|. ++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~----------------~~ 64 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK----------------DH 64 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC----------------CE
Confidence 79999999999999999999999987652 1112568999999999999999999999996 89
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHH
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~ 178 (843)
+++|||||||.+|..++.++++.+|++|+|||+.+|++.+|+.+|+.+...++|.++|+||+|+. +++++.+.+.+
T Consensus 65 ~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~----~a~~~~~~~~l 140 (270)
T cd01886 65 RINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRT----GADFFRVVEQI 140 (270)
T ss_pred EEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 87755444333
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcC--CCHHHHHHhhccccccCCCCCc
Q 003169 179 QKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG--VDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~--i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
++ .+.. .+...++|++.. ..|. +|+..+..+.|.+ ...++
T Consensus 141 ~~-------~l~~-----------~~~~~~~Pisa~----------------~~f~g~vd~~~~~a~~~~~----~~~~~ 182 (270)
T cd01886 141 RE-------KLGA-----------NPVPLQLPIGEE----------------DDFRGVVDLIEMKALYWDG----ELGEK 182 (270)
T ss_pred HH-------HhCC-----------CceEEEeccccC----------------CCceEEEEccccEEEeccc----CCCce
Confidence 33 2221 122235566443 1121 5555555555521 11122
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc-------
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA------- 328 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------- 328 (843)
+...+. .....+.+.+.+.+|+|++++.||++|++||++ .+++.+|+. ++|++++. ++++|+
T Consensus 183 ~~~~~i-----p~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~PV~~gSa~~ 252 (270)
T cd01886 183 IEETEI-----PEDLLEEAEEAREELIETLAEFDDELMEKYLEG--EEITEEEIK---AAIRKGTIANKIVPVLCGSAFK 252 (270)
T ss_pred eEEecC-----CHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHcCcEEEEEeCcCCC
Confidence 333222 234555666777899999999999999999998 789999997 56777766 689997
Q ss_pred ---hHHHHHHHHhcCCCh
Q 003169 329 ---SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ---~~~LLd~i~~~lPsP 343 (843)
++.|||+|++|+|||
T Consensus 253 ~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 253 NKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred CcCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 29
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.9e-33 Score=316.17 Aligned_cols=300 Identities=23% Similarity=0.361 Sum_probs=222.4
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccc
Q 003169 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (843)
Q Consensus 11 ~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
+.+......+||+++||+|||||||+++|++..+.+..........+|+.++|++||+|++++...+.++
T Consensus 4 ~~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---------- 73 (409)
T CHL00071 4 EKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE---------- 73 (409)
T ss_pred hhccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC----------
Confidence 3455667789999999999999999999999988775432323457899999999999999988776654
Q ss_pred cccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccC
Q 003169 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQV 169 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~ 169 (843)
+.+++|+|||||.+|...+.++++.+|+|++||||.+|+..||++++.++...++| +|+++||||+. +.
T Consensus 74 ------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~----~~ 143 (409)
T CHL00071 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV----DD 143 (409)
T ss_pred ------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC----CH
Confidence 77899999999999999999999999999999999999999999999999999999 66899999987 42
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003169 170 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
++. ++.+.++++.++..+. +.+...++.++|+++||......
T Consensus 144 --~~~---~~~~~~~l~~~l~~~~--------~~~~~~~ii~~Sa~~g~n~~~~~------------------------- 185 (409)
T CHL00071 144 --EEL---LELVELEVRELLSKYD--------FPGDDIPIVSGSALLALEALTEN------------------------- 185 (409)
T ss_pred --HHH---HHHHHHHHHHHHHHhC--------CCCCcceEEEcchhhcccccccC-------------------------
Confidence 232 3333445555554322 11112256677887776432110
Q ss_pred cCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccch
Q 003169 250 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 329 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 329 (843)
. .+.. + ...|....
T Consensus 186 ----~-~~~~----~---------------------------------------------------------~~~w~~~~ 199 (409)
T CHL00071 186 ----P-KIKR----G---------------------------------------------------------ENKWVDKI 199 (409)
T ss_pred ----c-cccc----c---------------------------------------------------------CCchhhhH
Confidence 0 0000 0 00122223
Q ss_pred HHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEE
Q 003169 330 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 409 (843)
Q Consensus 330 ~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l 409 (843)
..||+++.+++|+|.. +.++||.++|++++..++.|. ++++||+||+++.||.|
T Consensus 200 ~~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~v~~~~g~G~-Vv~G~V~sG~l~~Gd~v 253 (409)
T CHL00071 200 YNLMDAVDSYIPTPER-------------------------DTDKPFLMAIEDVFSITGRGT-VATGRIERGTVKVGDTV 253 (409)
T ss_pred HHHHHHHHhhCCCCCC-------------------------CCCCCEEEEEEEEEEeCCCeE-EEEEEEecCEEeeCCEE
Confidence 5788899888888731 245899999999999888886 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecCC
Q 003169 410 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNEK 471 (843)
Q Consensus 410 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~~ 471 (843)
.+++++. + . ..+|.+|... ..++++|.|||+|++. |++....+.| +|++.+
T Consensus 254 ~i~p~~~--~-~----~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 254 EIVGLRE--T-K----TTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EEeeCCC--C-c----EEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 8765321 1 1 2688888753 2478999999999664 6654445778 787653
No 30
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=8.8e-34 Score=301.53 Aligned_cols=248 Identities=23% Similarity=0.261 Sum_probs=186.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc-------CCceEeecCccccccccceeeeeeEEEEEeechhhhhccc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-------AGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~-------~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
++|||+++||+|+|||||+++|++.+|.+.+.- .| .+++|+.++|++||+|+..+...+.|.
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~-~t~~D~~~~e~~rg~si~~~~~~~~~~---------- 69 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRK-HATSDWMEIEKQRGISVTSSVMQFEYR---------- 69 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCC-CccCCCcHHHHhCCCCeEEEEEEEeeC----------
Confidence 479999999999999999999999999987620 12 347899999999999999999999996
Q ss_pred cccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCC
Q 003169 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~ 170 (843)
+++++|||||||.+|..++..+++.+|++|+|+|+++|+..+++.+|+++...++|+++|+||||+. +++
T Consensus 70 ------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~----~a~ 139 (267)
T cd04169 70 ------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDRE----GRD 139 (267)
T ss_pred ------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccC----CCC
Confidence 8999999999999999999999999999999999999999999999999988899999999999998 877
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhcccccc
Q 003169 171 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
..++++ +++..+.. .+...++|++.+...-++ +|+..+.++.|.+
T Consensus 140 ~~~~~~-------~l~~~l~~-----------~~~~~~~Pi~~~~~~~g~--------------vd~~~~~a~~~~~--- 184 (267)
T cd04169 140 PLELLD-------EIEEELGI-----------DCTPLTWPIGMGKDFKGV--------------YDRRTGEVELYDR--- 184 (267)
T ss_pred HHHHHH-------HHHHHHCC-----------CceeEEecccCCCceEEE--------------EEhhhCEEEEecC---
Confidence 444333 33333321 122236677655211111 5555544444411
Q ss_pred CCCCC-ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc
Q 003169 251 DPATR-KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA 328 (843)
Q Consensus 251 ~~~~~-~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~ 328 (843)
+.++ .....+.+. .+.+.+++.|+++||+|+++ .+++.+++. +.+.+++. ++++|+
T Consensus 185 -~~~~~~~~~~~~p~----------------~~~e~~~e~~~~l~e~~~e~--~~~~~~~~~---~~~~~~~~~~~~~Pv 242 (267)
T cd04169 185 -GAGGATIAPEETKG----------------LDDPKLDELGGDLAEQLREE--LELLEGAGP---EFDQEAFLAGELTPV 242 (267)
T ss_pred -CCCCccceeccCCc----------------ccHHHHHhcCHHHHHHHhCC--CccchhhhH---HHhHHHHHcCCEEEE
Confidence 1111 111111111 11277888999999999987 667777754 34455555 689997
Q ss_pred ----------hHHHHHHHHhcCCCh
Q 003169 329 ----------SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ----------~~~LLd~i~~~lPsP 343 (843)
++.|||+|++|+|||
T Consensus 243 ~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 243 FFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred EecccccCcCHHHHHHHHHHHCCCC
Confidence 799999999999998
No 31
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=3e-33 Score=292.73 Aligned_cols=223 Identities=32% Similarity=0.454 Sum_probs=180.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
||+++||+|+|||||+++|++.+|.+.+. ..| .+++|+.++|++||+|+..+...+.|. +
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~~~~----------------~ 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG-TTRTDTMELERQRGITIFSAVASFQWE----------------D 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC-cccCCCchhHhhCCCceeeeeEEEEEC----------------C
Confidence 79999999999999999999999988762 122 467899999999999999999999996 8
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
++++|||||||.+|..++..+++.+|++++|+|+.+|+..+++.+|+++...++|.++|+||+|+. ++++++.++.
T Consensus 64 ~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~----~a~~~~~~~~ 139 (237)
T cd04168 64 TKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRA----GADLEKVYQE 139 (237)
T ss_pred EEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccc----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 8875554443
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCce
Q 003169 178 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+++ .+.. .+...++| +|.+...
T Consensus 140 i~~-------~~~~-----------~~~~~~~p------~~~~~~~---------------------------------- 161 (237)
T cd04168 140 IKE-------KLSS-----------DIVPMQKV------GLAPNIC---------------------------------- 161 (237)
T ss_pred HHH-------HHCC-----------CeEEEECC------cEeeeee----------------------------------
Confidence 333 2221 11111222 1211000
Q ss_pred eecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc--------
Q 003169 258 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA-------- 328 (843)
Q Consensus 258 ~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~-------- 328 (843)
...+ . ..+|+|++++.||++||+||++ .+++++|+. .+|++++. ++++|+
T Consensus 162 ~~~~---------~-------~~~l~e~vae~dd~l~e~yl~~--~~~~~~el~---~~l~~~~~~~~~~Pv~~gsa~~~ 220 (237)
T cd04168 162 ETNE---------I-------DDEFWETLAEGDDELLEKYLEG--GPIEELELD---NELSARIAKRKVFPVYHGSALKG 220 (237)
T ss_pred eeee---------c-------cHHHHHHHhcCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCeEEEEEccccCC
Confidence 0000 0 1478999999999999999997 789999997 56777765 689997
Q ss_pred --hHHHHHHHHhcCCCh
Q 003169 329 --SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 --~~~LLd~i~~~lPsP 343 (843)
++.|||++++|+|||
T Consensus 221 ~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 221 IGIEELLEGITKLFPTS 237 (237)
T ss_pred cCHHHHHHHHHHhcCCC
Confidence 799999999999998
No 32
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-32 Score=293.57 Aligned_cols=288 Identities=27% Similarity=0.402 Sum_probs=214.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEEEe
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
....-|++++||+|||||||+.+|||..|.++.. +.|. .++||..++||+||+||+.+...|..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3456699999999999999999999999999763 2343 579999999999999999999988875
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcCCCc-
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~~~p- 152 (843)
.+.++|+|||||.||..+++.++++||+|||||||..| +.+||++++-.+...++.
T Consensus 84 ----------------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~ 147 (428)
T COG5256 84 ----------------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQ 147 (428)
T ss_pred ----------------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCce
Confidence 77899999999999999999999999999999999998 999999999999999997
Q ss_pred eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhh
Q 003169 153 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (843)
Q Consensus 153 ~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 232 (843)
.|+++||||.. .|+ .++|+++..++..++..+...+. ++.|.|. ||+.|-..+-.
T Consensus 148 lIVavNKMD~v----~wd----e~rf~ei~~~v~~l~k~~G~~~~-~v~FIPi-------Sg~~G~Nl~~~--------- 202 (428)
T COG5256 148 LIVAVNKMDLV----SWD----EERFEEIVSEVSKLLKMVGYNPK-DVPFIPI-------SGFKGDNLTKK--------- 202 (428)
T ss_pred EEEEEEccccc----ccC----HHHHHHHHHHHHHHHHHcCCCcc-CCeEEec-------ccccCCccccc---------
Confidence 67899999999 887 56788888888886655432211 2334443 44444211110
Q ss_pred cCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHH
Q 003169 233 FGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKEL 312 (843)
Q Consensus 233 ~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~ 312 (843)
.+ ...||++
T Consensus 203 -----s~------~~pWY~G------------------------------------------------------------ 211 (428)
T COG5256 203 -----SE------NMPWYKG------------------------------------------------------------ 211 (428)
T ss_pred -----Cc------CCcCccC------------------------------------------------------------
Confidence 00 0111211
Q ss_pred hhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCce
Q 003169 313 MGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRF 392 (843)
Q Consensus 313 ~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~ 392 (843)
..||+++. .+..|.. .-+.||..-|..++.....|.
T Consensus 212 -----------------pTLleaLd-~~~~p~~-------------------------~~d~Plr~pI~~v~~i~~~gt- 247 (428)
T COG5256 212 -----------------PTLLEALD-QLEPPER-------------------------PLDKPLRLPIQDVYSISGIGT- 247 (428)
T ss_pred -----------------ChHHHHHh-ccCCCCC-------------------------CCCCCeEeEeeeEEEecCCce-
Confidence 12333333 3334410 035899999999988667777
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeec
Q 003169 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTN 469 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~ 469 (843)
+..+||.||.|++||.|++...+ . .-.|+.+.. +.++++.+.|||.+.+ +|++....+.| .+.+
T Consensus 248 v~vGrVEsG~i~~g~~v~~~p~~-----~----~~evksie~----~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~ 314 (428)
T COG5256 248 VPVGRVESGVIKPGQKVTFMPAG-----V----VGEVKSIEM----HHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGH 314 (428)
T ss_pred EEEEEEeeeeeccCCEEEEecCc-----c----eEEEeeeee----cccccccCCCCCeEEEEecCCchhccCCccEecc
Confidence 88899999999999999986532 1 135666653 3788999999999876 46665555778 4444
Q ss_pred CCC
Q 003169 470 EKE 472 (843)
Q Consensus 470 ~~~ 472 (843)
.++
T Consensus 315 ~~n 317 (428)
T COG5256 315 SDN 317 (428)
T ss_pred CCC
Confidence 443
No 33
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=6.2e-32 Score=303.91 Aligned_cols=286 Identities=24% Similarity=0.352 Sum_probs=207.9
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..+..+||+++||+|||||||+++|+...+...+......+.+|..++|++||+|++++...+.++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~-------------- 73 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE-------------- 73 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------------
Confidence 356678999999999999999999986543211100111236899999999999999876665443
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHHH
Q 003169 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEE 173 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~~ 173 (843)
+..++|||||||.+|..++.++++.+|++++|||+.+|+.+||++++.++...++| +|+++||||+. .. ++
T Consensus 74 --~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~----~~--~~ 145 (394)
T PRK12736 74 --KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV----DD--EE 145 (394)
T ss_pred --CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc----ch--HH
Confidence 67899999999999999999999999999999999999999999999999999999 56899999986 32 22
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCC
Q 003169 174 AYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~ 253 (843)
. ++.+.++++..+..+. +.+...++.+.|+++|+.
T Consensus 146 ~---~~~i~~~i~~~l~~~~--------~~~~~~~ii~vSa~~g~~---------------------------------- 180 (394)
T PRK12736 146 L---LELVEMEVRELLSEYD--------FPGDDIPVIRGSALKALE---------------------------------- 180 (394)
T ss_pred H---HHHHHHHHHHHHHHhC--------CCcCCccEEEeecccccc----------------------------------
Confidence 2 2233345555554321 111112344455533210
Q ss_pred CCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHH
Q 003169 254 TRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALL 333 (843)
Q Consensus 254 ~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LL 333 (843)
+ . ..|.+....|+
T Consensus 181 ----------~--------------------------------------~-------------------~~~~~~i~~Ll 193 (394)
T PRK12736 181 ----------G--------------------------------------D-------------------PKWEDAIMELM 193 (394)
T ss_pred ----------C--------------------------------------C-------------------CcchhhHHHHH
Confidence 0 0 01222235788
Q ss_pred HHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcC
Q 003169 334 EMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMG 413 (843)
Q Consensus 334 d~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~ 413 (843)
+++.+++|.|.. +.++||.++|++++..++.|. ++++||++|+|+.||.|++++
T Consensus 194 ~~l~~~lp~~~~-------------------------~~~~p~r~~I~~~~~~~g~G~-Vv~G~v~~G~l~~gd~v~i~p 247 (394)
T PRK12736 194 DAVDEYIPTPER-------------------------DTDKPFLMPVEDVFTITGRGT-VVTGRVERGTVKVGDEVEIVG 247 (394)
T ss_pred HHHHHhCCCCCC-------------------------CCCCCeEEEEEEEEecCCcEE-EEEEEEeecEEecCCEEEEec
Confidence 888889997721 235799999999999888887 899999999999999999875
Q ss_pred CCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003169 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 414 ~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~ 471 (843)
.+. . ...+|.+|.. ...++++|.|||++++ .|++....+.| +||+++
T Consensus 248 ~~~--~-----~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 248 IKE--T-----QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred CCC--C-----eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 321 1 1268888875 3567899999999966 67764445678 787753
No 34
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=100.00 E-value=7.6e-33 Score=276.59 Aligned_cols=173 Identities=65% Similarity=1.095 Sum_probs=159.3
Q ss_pred CCeEeeEeccccccceeeeeecCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEec
Q 003169 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 638 (843)
Q Consensus 559 ~p~V~yrETi~~~~~~~~~~~~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 638 (843)
+|.|+|||||.+.+...+..+++++|++++++++|||.++.+.|++|....+...+.+...+...++|+...+++||+||
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~Iw~fG 80 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKSPNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKIWAFG 80 (177)
T ss_pred CCCCCEeeecccCCCccEEEEcCCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcEEEEC
Confidence 69999999999988777788999999999999999999999999998876555556666777789999999999999999
Q ss_pred cCCCCCceEEecccCccc----hHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHH
Q 003169 639 PETIGPNMVVDMCKGVQY----LNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVI 714 (843)
Q Consensus 639 p~~~g~n~~~~~~~g~~~----~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~ 714 (843)
|++.|+|+|+|.+.+.++ +++++++|++||++|+++|||||+||+||+|+|.|+.+|.+..+...+|+++|+|+||
T Consensus 81 P~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~r~a~ 160 (177)
T cd01681 81 PDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAARRAC 160 (177)
T ss_pred CCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHHHHHH
Confidence 999999999999988777 8999999999999999999999999999999999999998767778899999999999
Q ss_pred HHHHhhcCCeeeeceEE
Q 003169 715 YASQLTAKPRLLEPVYL 731 (843)
Q Consensus 715 ~~a~~~a~p~LlEPi~~ 731 (843)
++|+++|+|+||||||.
T Consensus 161 ~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 161 YAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHhhCCCEEEccccC
Confidence 99999999999999994
No 35
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=2.4e-31 Score=302.77 Aligned_cols=304 Identities=24% Similarity=0.362 Sum_probs=220.7
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhh
Q 003169 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 7 ~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
..+...++.....+||+++||+|||||||+++|++..+.+..........+|+.++|++||+|++.....+.++
T Consensus 69 ~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~------ 142 (478)
T PLN03126 69 RAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE------ 142 (478)
T ss_pred HHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC------
Confidence 34445555567789999999999999999999999988776543334567999999999999999988877765
Q ss_pred hccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccc
Q 003169 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFL 165 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~ 165 (843)
+..++|||||||.+|..++.++++.+|+|++||||.+|+.+||+++|.++...++| +|+++||||+.
T Consensus 143 ----------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~-- 210 (478)
T PLN03126 143 ----------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV-- 210 (478)
T ss_pred ----------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc--
Confidence 77999999999999999999999999999999999999999999999999999999 66899999987
Q ss_pred cccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhc
Q 003169 166 ELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
. .++. ++.+.++++.++..+. |.+...++...|+++||.....
T Consensus 211 --~--~~~~---~~~i~~~i~~~l~~~g--------~~~~~~~~vp~Sa~~g~n~~~~---------------------- 253 (478)
T PLN03126 211 --D--DEEL---LELVELEVRELLSSYE--------FPGDDIPIISGSALLALEALME---------------------- 253 (478)
T ss_pred --C--HHHH---HHHHHHHHHHHHHhcC--------CCcCcceEEEEEcccccccccc----------------------
Confidence 4 2333 3334445666665422 1111224555677666533110
Q ss_pred cccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhh
Q 003169 246 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 325 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (843)
...... + + ..|
T Consensus 254 --------~~~~~~----g-------------------------~--------------------------------~~w 264 (478)
T PLN03126 254 --------NPNIKR----G-------------------------D--------------------------------NKW 264 (478)
T ss_pred --------cccccc----C-------------------------C--------------------------------Cch
Confidence 000000 0 0 001
Q ss_pred ccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecC
Q 003169 326 LPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVAT 405 (843)
Q Consensus 326 ~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~ 405 (843)
......||+++.++.|.|.. +.+.|+.++|..++..++.|. +..+||.+|+|+.
T Consensus 265 y~~i~~Ll~~l~~~~~~p~r-------------------------~~~~p~r~~I~~vf~v~g~Gt-Vv~G~V~sG~i~~ 318 (478)
T PLN03126 265 VDKIYELMDAVDSYIPIPQR-------------------------QTDLPFLLAVEDVFSITGRGT-VATGRVERGTVKV 318 (478)
T ss_pred hhhHHHHHHHHHHhCCCCCC-------------------------ccccceeeEEEEEEEeCCceE-EEEEEEEcCeEec
Confidence 10013567777777766620 135789999999998888886 8999999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003169 406 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 406 g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~ 471 (843)
||.|++++.+ .. ...+|..|... ..++++|.|||.+++ .|++....+.| .|++.+
T Consensus 319 Gd~v~i~p~~----~~---~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 319 GETVDIVGLR----ET---RSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred CCEEEEecCC----Cc---eEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 9999986321 11 12578888753 477999999999888 56655445667 777653
No 36
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.9e-31 Score=298.66 Aligned_cols=292 Identities=21% Similarity=0.313 Sum_probs=212.4
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccc
Q 003169 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR 90 (843)
Q Consensus 11 ~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~ 90 (843)
+.+....+..||+++||+|||||||+++|++..+...+......+.+|..++|++||+|++++...+.++
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------- 73 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------- 73 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------
Confidence 3455567788999999999999999999998544221111111247899999999999999877665543
Q ss_pred cccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcccccccC
Q 003169 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQV 169 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~~~~~~~ 169 (843)
+.+++|||||||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||||+. +.
T Consensus 74 ------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~----~~ 143 (396)
T PRK12735 74 ------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----DD 143 (396)
T ss_pred ------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc----ch
Confidence 6789999999999999999999999999999999999999999999999999999976 589999987 41
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccc
Q 003169 170 DGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENF 249 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~ 249 (843)
++. +..+.++++.++..+.. .+...++.+.|+..||.... .
T Consensus 144 --~~~---~~~~~~ei~~~l~~~~~--------~~~~~~ii~~Sa~~g~n~~~-------------------~------- 184 (396)
T PRK12735 144 --EEL---LELVEMEVRELLSKYDF--------PGDDTPIIRGSALKALEGDD-------------------D------- 184 (396)
T ss_pred --HHH---HHHHHHHHHHHHHHcCC--------CcCceeEEecchhccccCCC-------------------C-------
Confidence 222 33333455555543321 11122455566655542100 0
Q ss_pred cCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccch
Q 003169 250 FDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPAS 329 (843)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~ 329 (843)
..|.+..
T Consensus 185 -------------------------------------------------------------------------~~w~~~~ 191 (396)
T PRK12735 185 -------------------------------------------------------------------------EEWEAKI 191 (396)
T ss_pred -------------------------------------------------------------------------CcccccH
Confidence 0011112
Q ss_pred HHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEE
Q 003169 330 SALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKV 409 (843)
Q Consensus 330 ~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l 409 (843)
..||+++.+++|.|.. +.++||.++|..++..++.|. ++.+||.+|+|+.||.|
T Consensus 192 ~~Ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~Gt-vv~G~v~~G~i~~gd~v 245 (396)
T PRK12735 192 LELMDAVDSYIPEPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIVKVGDEV 245 (396)
T ss_pred HHHHHHHHhcCCCCCc-------------------------cCCCCeEEEEEEEEecCCceE-EEEEEEEecEEeCCCEE
Confidence 5788888888987721 235799999999998888886 89999999999999999
Q ss_pred EEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003169 410 RIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 410 ~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~ 471 (843)
++++.+ ... ..+|..|.. ...++++|.|||.+++ .|++....+.| +||+.+
T Consensus 246 ~i~p~~---~~~----~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 246 EIVGIK---ETQ----KTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EEecCC---CCe----EEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 987532 111 257888775 3578999999999988 57655445678 787753
No 37
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.8e-31 Score=301.25 Aligned_cols=289 Identities=24% Similarity=0.329 Sum_probs=209.9
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCccccccccceeeeeeEEEEE
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYY 79 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~ 79 (843)
..++.+||+++||+|||||||+++||+.+|.+.+.. .|. .+++|..++|++||+||+.+...+.|
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 345678999999999999999999999999876531 111 35799999999999999998887777
Q ss_pred eechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-------chhHHHHHHHHHcCCCc
Q 003169 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR 152 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~~t~~~l~~~~~~~~p 152 (843)
. ++.++|||||||.||..++.++++.+|+||+||||.+|. ..||+++|.++...++|
T Consensus 83 ~----------------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 83 T----------------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred C----------------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCC
Confidence 5 889999999999999999999999999999999999984 27999999999999997
Q ss_pred e-EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhh
Q 003169 153 P-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~-ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
. |+++||||+. ..+ ...++|.+++++++.++..+. +.+....+...|++.|.+....
T Consensus 147 ~iIV~vNKmD~~----~~~--~~~~~~~~i~~ei~~~l~~~g--------~~~~~~~~ipiSa~~G~ni~~~-------- 204 (447)
T PLN00043 147 QMICCCNKMDAT----TPK--YSKARYDEIVKEVSSYLKKVG--------YNPDKIPFVPISGFEGDNMIER-------- 204 (447)
T ss_pred cEEEEEEcccCC----chh--hhHHHHHHHHHHHHHHHHHcC--------CCcccceEEEEecccccccccc--------
Confidence 5 6799999976 322 224568888888888776432 1122223334456554322100
Q ss_pred hcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHH
Q 003169 232 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 311 (843)
.. ..-| | . +
T Consensus 205 ------~~--~~~W----y---------------------------------~---------------g----------- 213 (447)
T PLN00043 205 ------ST--NLDW----Y---------------------------------K---------------G----------- 213 (447)
T ss_pred ------cc--CCcc----c---------------------------------c---------------h-----------
Confidence 00 0001 0 0 0
Q ss_pred HhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCc
Q 003169 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~ 391 (843)
..||+++.+ +|.|. .+.+.||.+.|..++..++.|.
T Consensus 214 ------------------~tLl~~l~~-i~~p~-------------------------~~~~~plr~~I~~v~~~~g~G~ 249 (447)
T PLN00043 214 ------------------PTLLEALDQ-INEPK-------------------------RPSDKPLRLPLQDVYKIGGIGT 249 (447)
T ss_pred ------------------HHHHHHHhh-cCCCc-------------------------cccCCCcEEEEEEEEEeCCcEE
Confidence 234555543 34441 0135789999999988777776
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eee
Q 003169 392 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~ 468 (843)
+..+||.+|+|+.||.|.++.. +. ..+|..|.. ...++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~~~P~----~~-----~~~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~ 315 (447)
T PLN00043 250 -VPVGRVETGVIKPGMVVTFGPT----GL-----TTEVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYVAS 315 (447)
T ss_pred -EEEEEEECCEEeeCCEEEEcCC----CC-----EEEEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccEEc
Confidence 8999999999999999997532 11 258888875 45789999999998875 5533334667 666
Q ss_pred cC
Q 003169 469 NE 470 (843)
Q Consensus 469 ~~ 470 (843)
+.
T Consensus 316 ~~ 317 (447)
T PLN00043 316 NS 317 (447)
T ss_pred cC
Confidence 64
No 38
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.98 E-value=1e-30 Score=294.42 Aligned_cols=287 Identities=21% Similarity=0.326 Sum_probs=204.8
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003169 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
+++..+.+||+++||+|||||||+++|++......+......+.+|..++|++||+|++++...+.+.
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~------------ 73 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE------------ 73 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC------------
Confidence 34456788999999999999999999986533211110111347999999999999999877665443
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcccccccCCH
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVDG 171 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~~~~~~~~~ 171 (843)
+..++|||||||.+|..++.++++.+|++++|||+.+|+..||++++..+...++|.+ +++||||+. +.
T Consensus 74 ----~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~----~~-- 143 (394)
T TIGR00485 74 ----NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV----DD-- 143 (394)
T ss_pred ----CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC----CH--
Confidence 6789999999999999999999999999999999999999999999999999999976 689999987 42
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccC
Q 003169 172 EEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFD 251 (843)
Q Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~ 251 (843)
++. ++.+.++++..+..+.. .+...++.+.|++.|+.
T Consensus 144 ~~~---~~~~~~~i~~~l~~~~~--------~~~~~~ii~vSa~~g~~-------------------------------- 180 (394)
T TIGR00485 144 EEL---LELVEMEVRELLSEYDF--------PGDDTPIIRGSALKALE-------------------------------- 180 (394)
T ss_pred HHH---HHHHHHHHHHHHHhcCC--------CccCccEEECccccccc--------------------------------
Confidence 222 23333455555543221 11111333444432210
Q ss_pred CCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHH
Q 003169 252 PATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSA 331 (843)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~ 331 (843)
+. .+ | ++ ....
T Consensus 181 ------------g~-----------~~-~--~~-------------------------------------------~~~~ 191 (394)
T TIGR00485 181 ------------GD-----------AE-W--EA-------------------------------------------KILE 191 (394)
T ss_pred ------------cC-----------Cc-h--hH-------------------------------------------hHHH
Confidence 00 00 0 00 0146
Q ss_pred HHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEE
Q 003169 332 LLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRI 411 (843)
Q Consensus 332 LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v 411 (843)
||+++.+++|.|.. +.++||.++|+.++..++.|. ++.+||.+|+|+.||.|++
T Consensus 192 ll~~l~~~~~~~~~-------------------------~~~~p~r~~V~~vf~~~g~G~-Vv~G~v~~G~l~~gd~v~i 245 (394)
T TIGR00485 192 LMDAVDEYIPTPER-------------------------ETDKPFLMPIEDVFSITGRGT-VVTGRVERGIVKVGEEVEI 245 (394)
T ss_pred HHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEEeeEEeCCCEEEE
Confidence 77888888887721 235799999999999888886 8999999999999999998
Q ss_pred cCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecC
Q 003169 412 MGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 470 (843)
Q Consensus 412 ~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~ 470 (843)
++.. .+. ..+|..|.. ...++++|.|||.|++ .|++....+.| +|++.
T Consensus 246 ~p~~--~~~-----~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~ 296 (394)
T TIGR00485 246 VGLK--DTR-----KTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKP 296 (394)
T ss_pred ecCC--CCc-----EEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecC
Confidence 6421 111 257888875 3467899999999977 57654334677 78775
No 39
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.98 E-value=8.4e-31 Score=297.65 Aligned_cols=289 Identities=24% Similarity=0.335 Sum_probs=208.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc--e---EeecCccccccccceeeeeeEEEEE
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD--V---RMTDTRQDEAERGITIKSTGISLYY 79 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~--~---~~~D~~~~E~~rgiTi~~~~~~~~~ 79 (843)
......||+++||+|||||||+++|++.+|.+.+.. .|. . +++|+.++|++||+|++.+...+.|
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 345678999999999999999999999999887531 222 2 4699999999999999998888777
Q ss_pred eechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-------chhHHHHHHHHHcCCCc
Q 003169 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR 152 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~~t~~~l~~~~~~~~p 152 (843)
. ++.++|||||||.+|..++.++++.+|+||+||||.+|+ .+||+++|.++...++|
T Consensus 83 ~----------------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~ 146 (446)
T PTZ00141 83 P----------------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVK 146 (446)
T ss_pred C----------------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCC
Confidence 5 889999999999999999999999999999999999998 58999999999999998
Q ss_pred e-EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhh
Q 003169 153 P-VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~-ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
. |+++||||+. ..+.. .++|.++.+++...+.... +.+...++...|++.|.+....
T Consensus 147 ~iiv~vNKmD~~----~~~~~--~~~~~~i~~~i~~~l~~~g--------~~~~~~~~ipiSa~~g~ni~~~-------- 204 (446)
T PTZ00141 147 QMIVCINKMDDK----TVNYS--QERYDEIKKEVSAYLKKVG--------YNPEKVPFIPISGWQGDNMIEK-------- 204 (446)
T ss_pred eEEEEEEccccc----cchhh--HHHHHHHHHHHHHHHHhcC--------CCcccceEEEeecccCCCcccC--------
Confidence 5 5899999965 32211 2457777777777665422 1122223444455444222100
Q ss_pred hcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHH
Q 003169 232 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 311 (843)
.. ...| |. +
T Consensus 205 ------~~--~~~W----y~------------------------------------------------G----------- 213 (446)
T PTZ00141 205 ------SD--NMPW----YK------------------------------------------------G----------- 213 (446)
T ss_pred ------CC--CCcc----cc------------------------------------------------h-----------
Confidence 00 0001 10 0
Q ss_pred HhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCc
Q 003169 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~ 391 (843)
..|++++..+ |.|.. +.+.|+.++|..++..++.|.
T Consensus 214 ------------------~tL~~~l~~~-~~~~~-------------------------~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 214 ------------------PTLLEALDTL-EPPKR-------------------------PVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred ------------------HHHHHHHhCC-CCCCc-------------------------CCCCCeEEEEEEEEecCCceE
Confidence 2345554333 33310 135789999999988777776
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eee
Q 003169 392 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~ 468 (843)
+..+||.+|+|+.||.|.++..+ . ..+|.+|.. ...++++|.|||.+++. +++....+.| .|+
T Consensus 250 -vv~G~V~~G~l~~Gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~ 315 (446)
T PTZ00141 250 -VPVGRVETGILKPGMVVTFAPSG-----V----TTEVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVAS 315 (446)
T ss_pred -EEEEEEEcceEecCCEEEEccCC-----c----EEEEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceEEe
Confidence 88999999999999999986422 1 268888875 34679999999998885 4433334567 666
Q ss_pred cC
Q 003169 469 NE 470 (843)
Q Consensus 469 ~~ 470 (843)
+.
T Consensus 316 ~~ 317 (446)
T PTZ00141 316 DS 317 (446)
T ss_pred cC
Confidence 64
No 40
>PRK00049 elongation factor Tu; Reviewed
Probab=99.97 E-value=1.5e-30 Score=292.61 Aligned_cols=291 Identities=21% Similarity=0.337 Sum_probs=209.1
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc
Q 003169 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG 91 (843)
Q Consensus 12 ~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~ 91 (843)
.+.+.+..+||+++||+|||||||+++|++...............+|+.++|++||+|++++...+.++
T Consensus 5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------- 73 (396)
T PRK00049 5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------- 73 (396)
T ss_pred hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------
Confidence 344557788999999999999999999998542211111111237899999999999999887665543
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcccccccCC
Q 003169 92 ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRCFLELQVD 170 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~~~~~~~~ 170 (843)
+..++|+|||||.+|..++.+++..+|++++|||+.+|+..||++++.++...++|.+ +++||||+. +
T Consensus 74 -----~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~----~-- 142 (396)
T PRK00049 74 -----KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV----D-- 142 (396)
T ss_pred -----CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc----c--
Confidence 6789999999999999999999999999999999999999999999999999999976 589999987 4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhcccccc
Q 003169 171 GEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFF 250 (843)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~ 250 (843)
.++. ++.+.++++.++..+. +.+...++...|+.+||...
T Consensus 143 ~~~~---~~~~~~~i~~~l~~~~--------~~~~~~~iv~iSa~~g~~~~----------------------------- 182 (396)
T PRK00049 143 DEEL---LELVEMEVRELLSKYD--------FPGDDTPIIRGSALKALEGD----------------------------- 182 (396)
T ss_pred hHHH---HHHHHHHHHHHHHhcC--------CCccCCcEEEeecccccCCC-----------------------------
Confidence 2222 3333445555554322 11112234455665443100
Q ss_pred CCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchH
Q 003169 251 DPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASS 330 (843)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~ 330 (843)
.. ..|.....
T Consensus 183 --~~--------------------------------------------------------------------~~w~~~~~ 192 (396)
T PRK00049 183 --DD--------------------------------------------------------------------EEWEKKIL 192 (396)
T ss_pred --Cc--------------------------------------------------------------------ccccccHH
Confidence 00 00111124
Q ss_pred HHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEE
Q 003169 331 ALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVR 410 (843)
Q Consensus 331 ~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~ 410 (843)
.||+++.+++|+|.. +.++||.++|..++..++.|. ++.+||.+|++++||.|+
T Consensus 193 ~ll~~l~~~~~~p~~-------------------------~~~~p~r~~I~~~f~v~g~G~-Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 193 ELMDAVDSYIPTPER-------------------------AIDKPFLMPIEDVFSISGRGT-VVTGRVERGIIKVGEEVE 246 (396)
T ss_pred HHHHHHHhcCCCCCC-------------------------CCCCCeEEEEEEEEeeCCceE-EEEEEEeeeEEecCCEEE
Confidence 778888888887721 135799999999988888886 899999999999999999
Q ss_pred EcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003169 411 IMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 411 v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~ 471 (843)
+++.. .+. ..+|+.|... .+++++|.|||.+++ .|++......| +||+.+
T Consensus 247 i~p~~--~~~-----~~~VksI~~~----~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 247 IVGIR--DTQ-----KTTVTGVEMF----RKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EeecC--CCc-----eEEEEEEEEC----CcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 87532 111 2578888753 467999999999888 56644334667 777753
No 41
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-31 Score=274.49 Aligned_cols=288 Identities=23% Similarity=0.345 Sum_probs=204.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....-||+.+||+|||||||+-++............-...-.|..|+|+.|||||+++.+.++..
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa--------------- 115 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA--------------- 115 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc---------------
Confidence 34567999999999999999999843321110000112335688999999999999887665543
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEcCCcccccccCCHHHH
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK~D~~~~~~~~~~~~~ 174 (843)
..++.-+|||||.||...++.+....|||||||.|++|..+||++++-.|++-+++. ++|+||.|.. . ++ |.
T Consensus 116 -~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V----~-d~-e~ 188 (449)
T KOG0460|consen 116 -KRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV----D-DP-EM 188 (449)
T ss_pred -ccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc----C-CH-HH
Confidence 567888999999999999999999999999999999999999999999999999985 5799999977 3 22 22
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCC
Q 003169 175 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (843)
.+ -+--+++.+|..|. |+-.+.+|..||++- . +-|
T Consensus 189 le---LVEmE~RElLse~g--------f~Gd~~PvI~GSAL~----------------------A----Leg-------- 223 (449)
T KOG0460|consen 189 LE---LVEMEIRELLSEFG--------FDGDNTPVIRGSALC----------------------A----LEG-------- 223 (449)
T ss_pred HH---HHHHHHHHHHHHcC--------CCCCCCCeeecchhh----------------------h----hcC--------
Confidence 22 11124555665543 222344677777720 0 000
Q ss_pred CceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHH
Q 003169 255 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 334 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (843)
.+++. |. ++ +..|||
T Consensus 224 ----------------------------------~~pei--------g~---------------~a--------I~kLld 238 (449)
T KOG0460|consen 224 ----------------------------------RQPEI--------GL---------------EA--------IEKLLD 238 (449)
T ss_pred ----------------------------------CCccc--------cH---------------HH--------HHHHHH
Confidence 00010 00 01 257999
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCC
Q 003169 335 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 414 (843)
Q Consensus 335 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 414 (843)
++.+|+|.|. -+-+.||++-|-.++.-+.+|. ++.+|+..|+|++|+.+-++|.
T Consensus 239 avDsyip~P~-------------------------R~~~~pFl~pie~vfsI~GRGT-VvtGrlERG~lKkG~e~eivG~ 292 (449)
T KOG0460|consen 239 AVDSYIPTPE-------------------------RDLDKPFLLPIEDVFSIPGRGT-VVTGRLERGVLKKGDEVEIVGH 292 (449)
T ss_pred HHhccCCCcc-------------------------cccCCCceeehhheeeecCCce-EEEEEEeecccccCCEEEEecc
Confidence 9999999993 1245789999988888899998 9999999999999999999986
Q ss_pred CCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCCC
Q 003169 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEKE 472 (843)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~~ 472 (843)
|.+. + ..|+-+-. -...+++|.|||-+++ +|++....+.| .++.+..
T Consensus 293 ~~~l--k-----ttvtgiem----F~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGs 342 (449)
T KOG0460|consen 293 NKTL--K-----TTVTGIEM----FRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGS 342 (449)
T ss_pred Ccce--e-----eEeehHHH----HHHHHHhcccccceehhhhcCCHHHHhcccEEecCCc
Confidence 5221 1 23333322 2345899999999875 68877666778 6666543
No 42
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.7e-31 Score=264.53 Aligned_cols=286 Identities=23% Similarity=0.349 Sum_probs=201.2
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccccc
Q 003169 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
......-||+.+||+|||||||+-++............-...-.|..|+|++|||||+.+.+.++..
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~------------- 73 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA------------- 73 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC-------------
Confidence 3446678999999999999999999954432111111112334688999999999999988777664
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~ 172 (843)
+..+..+|||||.||...++.+..++|+|||||+|.+|.++||++++-.+...++| +++|+||+|+. . |+
T Consensus 74 ---~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmv----d-d~- 144 (394)
T COG0050 74 ---NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMV----D-DE- 144 (394)
T ss_pred ---CceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccccc----C-cH-
Confidence 67899999999999999999999999999999999999999999999999999998 45799999988 4 21
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCC
Q 003169 173 EAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDP 252 (843)
Q Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~ 252 (843)
+ .+...-.+++.+|..|.. .-...+|+.||++. .+-
T Consensus 145 e---llelVemEvreLLs~y~f--------~gd~~Pii~gSal~--------------------------ale------- 180 (394)
T COG0050 145 E---LLELVEMEVRELLSEYGF--------PGDDTPIIRGSALK--------------------------ALE------- 180 (394)
T ss_pred H---HHHHHHHHHHHHHHHcCC--------CCCCcceeechhhh--------------------------hhc-------
Confidence 2 233333456666765432 11223556666521 000
Q ss_pred CCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHH
Q 003169 253 ATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSAL 332 (843)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~L 332 (843)
+++. |..-+..|
T Consensus 181 ------------------------------------~~~~--------------------------------~~~~i~eL 192 (394)
T COG0050 181 ------------------------------------GDAK--------------------------------WEAKIEEL 192 (394)
T ss_pred ------------------------------------CCcc--------------------------------hHHHHHHH
Confidence 0000 11113578
Q ss_pred HHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEc
Q 003169 333 LEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIM 412 (843)
Q Consensus 333 Ld~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~ 412 (843)
||++.+|+|.|. .+.+.||.+.|-.++.-..+|. ++++||-.|+|+.|+.+.+.
T Consensus 193 m~avd~yip~Pe-------------------------r~~dkPflmpvEdvfsIsgrgt-vvtGrVeRG~lkvg~eveiv 246 (394)
T COG0050 193 MDAVDSYIPTPE-------------------------RDIDKPFLMPVEDVFSISGRGT-VVTGRVERGILKVGEEVEIV 246 (394)
T ss_pred HHHHHhcCCCCC-------------------------CcccccccccceeeEEEcCcee-EEEEEEeeeeeccCCEEEEe
Confidence 999999999993 1346899999998888888887 99999999999999999987
Q ss_pred CCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecC
Q 003169 413 GPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 470 (843)
Q Consensus 413 ~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~ 470 (843)
|-. .+ .+ ..+..+-. -+...++..|||-+++ +|.+.-....| .|+.+
T Consensus 247 G~~-~~-~k-----ttvtgvem----frk~ld~~~AGdnvg~llRg~~r~~veRGqvLakp 296 (394)
T COG0050 247 GIK-ET-QK-----TTVTGVEM----FRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKP 296 (394)
T ss_pred ccc-cc-ce-----eEEEhHHH----HHHHHhccccCCCcceEEEeccccceecceEeecC
Confidence 633 11 11 12221110 2334688899998765 46554333455 55544
No 43
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.97 E-value=9.2e-31 Score=280.38 Aligned_cols=252 Identities=26% Similarity=0.375 Sum_probs=192.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccc---cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQE---VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~---~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
||+++||+|+|||||+++|++..|.+.+. ..| .+++|+.++|++||+|+.+....+.|. +
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g-~~~~d~~~~e~~r~~ti~~~~~~~~~~----------------~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG-TTVSDYDPEEIKRKMSISTSVAPLEWK----------------G 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC-cccCCCCHHHHhhcccccceeEEEEEC----------------C
Confidence 79999999999999999999998887652 123 467899999999999999998888886 7
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
+.+++||||||.+|..++..+++.+|++++|+|++.|...++..+|+++...++|.++|+||+|+. +.+.++..+
T Consensus 64 ~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~----~~~~~~~~~- 138 (268)
T cd04170 64 HKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRE----RADFDKTLA- 138 (268)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccC----CCCHHHHHH-
Confidence 899999999999999999999999999999999999999999999999999999999999999999 776444433
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccC--ccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCC
Q 003169 178 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAG--LHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATR 255 (843)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~--~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~ 255 (843)
+++..+.. .+...++|.+.+ +.|+ +|......+.|. ...
T Consensus 139 ------~l~~~~~~-----------~~~~~~ip~~~~~~~~~~----------------vd~~~~~~~~~~-----~~~- 179 (268)
T cd04170 139 ------ALQEAFGR-----------PVVPLQLPIGEGDDFKGV----------------VDLLTEKAYIYS-----PGA- 179 (268)
T ss_pred ------HHHHHhCC-----------CeEEEEecccCCCceeEE----------------EEcccCEEEEcc-----CCC-
Confidence 33332211 111224454433 2222 222222233331 111
Q ss_pred ceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHH-Hhhccc------
Q 003169 256 KWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVM-QTWLPA------ 328 (843)
Q Consensus 256 ~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~-~~~~P~------ 328 (843)
.....+ ......+.+.+.+.+++|.+++.|+++||+||++ .+++.+|+. ++|++++. +.++|+
T Consensus 180 ~~~~~~-----~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~--~~~~~~~l~---~~l~~~~~~~~~~pv~~gSa~ 249 (268)
T cd04170 180 PSEEIE-----IPEELKEEVAEAREELLEAVAETDDELMEKYLEG--GELTEEELH---AGLRRALRAGLLVPVLCGSAL 249 (268)
T ss_pred cceecc-----CCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCC--CCCCHHHHH---HHHHHHHHhCCEEEEEEeeCC
Confidence 011111 2234555566677899999999999999999997 789999997 56666665 688887
Q ss_pred ----hHHHHHHHHhcCCCh
Q 003169 329 ----SSALLEMMIFHLPSP 343 (843)
Q Consensus 329 ----~~~LLd~i~~~lPsP 343 (843)
++.|||++++|+|+|
T Consensus 250 ~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 250 TNIGVRELLDALVHLLPSP 268 (268)
T ss_pred CCcCHHHHHHHHHHhCCCC
Confidence 799999999999998
No 44
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.97 E-value=2e-29 Score=299.30 Aligned_cols=314 Identities=18% Similarity=0.277 Sum_probs=223.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+|+||+|||||||+++|.... +. ....+|+|.......+.|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~--v~--------------~~e~~GIT~~iga~~v~~~---------------- 335 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN--VA--------------AGEAGGITQHIGAYQVETN---------------- 335 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC--cc--------------ccccCceeeeccEEEEEEC----------------
Confidence 356799999999999999999994311 11 1124688888887777775
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
++.++|||||||.+|...+.++++.+|++|||||+.+|+.+||.++|.++...++|+|+++||||+. +++++.+..
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~----~a~~e~V~~ 411 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKP----GANPDRVKQ 411 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECcccc----ccCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 776544333
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+.+ .+.+...|. +.+ ++...|+..|++.
T Consensus 412 eL~~----~~~~~e~~g----~~v-------p~vpvSAktG~GI------------------------------------ 440 (787)
T PRK05306 412 ELSE----YGLVPEEWG----GDT-------IFVPVSAKTGEGI------------------------------------ 440 (787)
T ss_pred HHHH----hcccHHHhC----CCc-------eEEEEeCCCCCCc------------------------------------
Confidence 2221 111111110 000 1222343322111
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
..|++.+
T Consensus 441 -------------------------------------------------------------------------~eLle~I 447 (787)
T PRK05306 441 -------------------------------------------------------------------------DELLEAI 447 (787)
T ss_pred -------------------------------------------------------------------------hHHHHhh
Confidence 0111111
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003169 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
... + +... ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 448 ~~~--~--e~~~-------------------l~~~~~~~~~g~V~es~~dkg~G~-v~~v~V~sGtLk~Gd~vv~g---- 499 (787)
T PRK05306 448 LLQ--A--EVLE-------------------LKANPDRPARGTVIEAKLDKGRGP-VATVLVQNGTLKVGDIVVAG---- 499 (787)
T ss_pred hhh--h--hhhh-------------------cccCCCCCcEEEEEEEEEcCCCeE-EEEEEEecCeEecCCEEEEC----
Confidence 100 0 0000 012456889999999999998887 99999999999999999851
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCC----------------------
Q 003169 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV---------------------- 473 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~---------------------- 473 (843)
.+.++++.|.+....++++|.|||+|+|.||++. ..+| ||+...+.
T Consensus 500 ----------~~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~-p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~ 568 (787)
T PRK05306 500 ----------TTYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV-PQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQ 568 (787)
T ss_pred ----------CcEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 2567888899988889999999999999999875 3577 87733210
Q ss_pred CcccccccccC----CCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechhhH
Q 003169 474 DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELH 537 (843)
Q Consensus 474 ~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GElH 537 (843)
....+..+..+ ..+.+.+.|.+......+.|..+|.+|..+++.+.+- -+|.|.+.
T Consensus 569 ~~~~l~~~~~~~~~~~~~~~~~iikad~~Gs~eai~~~l~~l~~~~v~~~i~--------~~~vG~it 628 (787)
T PRK05306 569 QRVSLENLFEQMKEGEVKELNLIIKADVQGSVEALKDSLEKLSTDEVKVNII--------HSGVGAIT 628 (787)
T ss_pred cccCHHHhhhhhhcCCceEEEEEEEeCCcchHHHHHHHHHhhcccCCceEEE--------eeccCCCC
Confidence 01112222111 1236999999999999999999999999999998773 45566553
No 45
>PLN03127 Elongation factor Tu; Provisional
Probab=99.97 E-value=3e-29 Score=284.37 Aligned_cols=288 Identities=22% Similarity=0.323 Sum_probs=201.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....||+++||+|||||||+++|........+........+|..++|++||+|++++...+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------------- 122 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------------- 122 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC---------------
Confidence 45678999999999999999999964421111100111226899999999999999887776654
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEcCCcccccccCCHHHH
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRCFLELQVDGEEA 174 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK~D~~~~~~~~~~~~~ 174 (843)
+.+++|||||||.+|..++.+++..+|++++|||+.+|+..||++++.++...++|. |+++||||+. . .++.
T Consensus 123 -~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv----~--~~~~ 195 (447)
T PLN03127 123 -KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV----D--DEEL 195 (447)
T ss_pred -CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC----C--HHHH
Confidence 678999999999999999999999999999999999999999999999999999995 6899999987 4 2233
Q ss_pred HHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCC
Q 003169 175 YQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~ 254 (843)
++.+ .++++.++..+.. .+...++...|++.++ . + .+
T Consensus 196 ~~~i---~~~i~~~l~~~~~--------~~~~vpiip~Sa~sa~----~----------------------g------~n 232 (447)
T PLN03127 196 LELV---EMELRELLSFYKF--------PGDEIPIIRGSALSAL----Q----------------------G------TN 232 (447)
T ss_pred HHHH---HHHHHHHHHHhCC--------CCCcceEEEeccceee----c----------------------C------CC
Confidence 3222 2244444432110 0111122223432110 0 0 00
Q ss_pred CceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHH
Q 003169 255 RKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLE 334 (843)
Q Consensus 255 ~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd 334 (843)
.....+ ....|++
T Consensus 233 ------------------------------------------------~~~~~~-------------------~i~~Ll~ 245 (447)
T PLN03127 233 ------------------------------------------------DEIGKN-------------------AILKLMD 245 (447)
T ss_pred ------------------------------------------------cccccc-------------------hHHHHHH
Confidence 000000 0146788
Q ss_pred HHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCC
Q 003169 335 MMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGP 414 (843)
Q Consensus 335 ~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~ 414 (843)
++.+++|.|.. +.++||.++|..++..++.|. +..+||.+|+++.||.|+++++
T Consensus 246 ~l~~~lp~p~r-------------------------~~~~pfr~~I~~vf~v~g~Gt-VvtG~v~~G~i~~Gd~v~i~p~ 299 (447)
T PLN03127 246 AVDEYIPEPVR-------------------------VLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEIVGL 299 (447)
T ss_pred HHHHhCCCCCc-------------------------ccccceEeeEEEEEEcCCceE-EEEEEEEccEEecCCEEEEccc
Confidence 88889998721 135789999999988888886 8999999999999999998864
Q ss_pred CCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecC
Q 003169 415 NYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 470 (843)
Q Consensus 415 n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~ 470 (843)
+.. +. ...+|..|... ..++++|.|||.+++ .|++....+.| .||+.
T Consensus 300 ~~~-g~----~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~ 349 (447)
T PLN03127 300 RPG-GP----LKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKP 349 (447)
T ss_pred CCC-Cc----EEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecC
Confidence 311 11 12688888753 356899999999887 46655445678 77764
No 46
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.97 E-value=1.7e-29 Score=261.31 Aligned_cols=197 Identities=43% Similarity=0.723 Sum_probs=173.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc---ccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
|||+++||+|+|||||+++|++.++.+.+ ...+..+++|..++|++||+|+......+.|.. .+++
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-----------~~~~ 69 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-----------SKGK 69 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-----------CCCC
Confidence 79999999999999999999999988763 234446789999999999999999988888751 1234
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
.+.+++||||||.+|...+..+++.+|++|+|+|+.++...+++.+++.+...++|.++++||+|+...++..++++.++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~ 149 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYF 149 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHH
Confidence 68999999999999999999999999999999999999999998888888878899999999999987777778888999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHH
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMY 229 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~ 229 (843)
++.++++++|..+..+..++ .+.|.|.++||.++|+.+||+|++++|+.+|
T Consensus 150 ~l~~~i~~~n~~~~~~~~~~--~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~ 200 (213)
T cd04167 150 KLRHIIDEVNNIIASFSTTL--SFLFSPENGNVCFASSKFGFCFTLESFAKKY 200 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCC--ceEeccCCCeEEEEecCCCeEEecHHHHhhh
Confidence 99999999999987654332 3678999999999999999999999999887
No 47
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.96 E-value=1.4e-28 Score=277.57 Aligned_cols=146 Identities=29% Similarity=0.344 Sum_probs=124.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-------eEeecCccccccccceeeeeeEEEEEeech
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-------VRMTDTRQDEAERGITIKSTGISLYYEMTD 83 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-------~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~ 83 (843)
||+++||+|||||||+++||+.+|.+.+.. .|+ .+++|+.++|++||+|++.....+.|+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 799999999999999999999999987632 343 358999999999999999998888775
Q ss_pred hhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCc
Q 003169 84 AALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~ 162 (843)
+++++|||||||.+|..++..+++.+|+|++||||.+|+.+||++++..+...++| +|+++||||+
T Consensus 79 -------------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 -------------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred -------------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78999999999999999999999999999999999999999999999999888887 5679999999
Q ss_pred ccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003169 163 CFLELQVDGEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (843)
. .++. +++.++.+++..++.
T Consensus 146 ~----~~~~----~~~~~i~~~~~~~~~ 165 (406)
T TIGR02034 146 V----DYDE----EVFENIKKDYLAFAE 165 (406)
T ss_pred c----cchH----HHHHHHHHHHHHHHH
Confidence 8 6542 234445555554443
No 48
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=1.2e-28 Score=280.93 Aligned_cols=286 Identities=26% Similarity=0.404 Sum_probs=206.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCccccccccceeeeeeEEEEEee
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
+...||+++||+|||||||+++|++..|.++... .|. .+++|+.++|++||+|++.....+.++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~- 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD- 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-
Confidence 4567999999999999999999999999986531 232 357999999999999999998888775
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC--ccchhHHHHHHHHHcCCCc-eEEEEE
Q 003169 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE--GVCVQTETVLRQALGERIR-PVLTVN 158 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~--gv~~~t~~~l~~~~~~~~p-~ilviN 158 (843)
++.++|||||||.+|...+..+++.+|++++|||+.+ |+..+++.++..+...++| +++++|
T Consensus 83 ---------------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviN 147 (425)
T PRK12317 83 ---------------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAIN 147 (425)
T ss_pred ---------------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEE
Confidence 7899999999999999999999999999999999999 9999999999988888875 778999
Q ss_pred cCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHH
Q 003169 159 KMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDES 238 (843)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~ 238 (843)
|||+. +++. +++..+.++++.++..+. +.+...++...|+..|.+.... .
T Consensus 148 K~Dl~----~~~~----~~~~~~~~~i~~~l~~~g--------~~~~~~~ii~iSA~~g~gi~~~--------------~ 197 (425)
T PRK12317 148 KMDAV----NYDE----KRYEEVKEEVSKLLKMVG--------YKPDDIPFIPVSAFEGDNVVKK--------------S 197 (425)
T ss_pred ccccc----cccH----HHHHHHHHHHHHHHHhhC--------CCcCcceEEEeecccCCCcccc--------------c
Confidence 99988 5432 234445555555553321 1111113444566544322100 0
Q ss_pred HHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHH
Q 003169 239 KMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALM 318 (843)
Q Consensus 239 ~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~ 318 (843)
. ..-| |
T Consensus 198 ~--~~~w----y-------------------------------------------------------------------- 203 (425)
T PRK12317 198 E--NMPW----Y-------------------------------------------------------------------- 203 (425)
T ss_pred c--CCCc----c--------------------------------------------------------------------
Confidence 0 0000 0
Q ss_pred HHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEE
Q 003169 319 KRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRV 398 (843)
Q Consensus 319 ~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV 398 (843)
.. ..|++++. .+|.|.. +.+.||.++|..++..+..|. +..+||
T Consensus 204 --------~g-~~L~~~l~-~~~~~~~-------------------------~~~~p~r~~i~~~~~~~g~G~-vv~G~v 247 (425)
T PRK12317 204 --------NG-PTLLEALD-NLKPPEK-------------------------PTDKPLRIPIQDVYSISGVGT-VPVGRV 247 (425)
T ss_pred --------cH-HHHHHHHh-cCCCCcc-------------------------ccCCCcEEEEEEEEeeCCCeE-EEEEEE
Confidence 00 24555543 3565510 135789999999988787776 889999
Q ss_pred EeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecCC
Q 003169 399 FSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 399 ~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~~ 471 (843)
.+|+|+.||.|+++..+ . ..+|..|.. ...+++.|.|||.|++ .|++......| +|++..
T Consensus 248 ~~G~v~~Gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 248 ETGVLKVGDKVVFMPAG-----V----VGEVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred eeccEecCCEEEECCCC-----C----eEEEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 99999999999986432 1 258888875 3467999999999877 35543334567 776643
No 49
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=5.2e-28 Score=275.67 Aligned_cols=288 Identities=24% Similarity=0.338 Sum_probs=205.5
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEE
Q 003169 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~ 78 (843)
......+||+++||+|||||||+++|++..|.++.. ..|. .+++|..++|++||+|++.+...+.
T Consensus 2 ~~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 445678899999999999999999999999987642 1232 3579999999999999999988877
Q ss_pred EeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc---cchhHHHHHHHHHcCCCc-eE
Q 003169 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG---VCVQTETVLRQALGERIR-PV 154 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g---v~~~t~~~l~~~~~~~~p-~i 154 (843)
+. ++.++|||||||.+|...+..+++.+|++|+|||+++| ...++..++..+...+++ +|
T Consensus 82 ~~----------------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iI 145 (426)
T TIGR00483 82 TD----------------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLI 145 (426)
T ss_pred cC----------------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEE
Confidence 75 78999999999999999999999999999999999999 888998887777667765 67
Q ss_pred EEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcC
Q 003169 155 LTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFG 234 (843)
Q Consensus 155 lviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~ 234 (843)
+++||+|+. +++.+ ++..+.++++.++..+. +.+...++...|+..|++....
T Consensus 146 VviNK~Dl~----~~~~~----~~~~~~~ei~~~~~~~g--------~~~~~~~~i~iSA~~g~ni~~~----------- 198 (426)
T TIGR00483 146 VAINKMDSV----NYDEE----EFEAIKKEVSNLIKKVG--------YNPDTVPFIPISAWNGDNVIKK----------- 198 (426)
T ss_pred EEEEChhcc----CccHH----HHHHHHHHHHHHHHHcC--------CCcccceEEEeecccccccccc-----------
Confidence 899999997 65532 34444455555544321 1111113344466554322100
Q ss_pred CCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhh
Q 003169 235 VDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMG 314 (843)
Q Consensus 235 i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~ 314 (843)
+.. .|.| + +
T Consensus 199 ------------------------------------~~~---~~w~---~---------------g-------------- 207 (426)
T TIGR00483 199 ------------------------------------SEN---TPWY---K---------------G-------------- 207 (426)
T ss_pred ------------------------------------ccC---Cccc---c---------------c--------------
Confidence 000 0101 0 0
Q ss_pred HHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeE
Q 003169 315 KALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFA 394 (843)
Q Consensus 315 ~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~ 394 (843)
..|++++.+ +|.|. .+.++||.++|..++..++.|. ++
T Consensus 208 ---------------~~l~~~l~~-~~~~~-------------------------~~~~~p~r~~i~~v~~~~g~G~-vv 245 (426)
T TIGR00483 208 ---------------KTLLEALDA-LEPPE-------------------------KPTDKPLRIPIQDVYSITGVGT-VP 245 (426)
T ss_pred ---------------hHHHHHHhc-CCCCC-------------------------CccCCCcEEEEEEEEecCCCeE-EE
Confidence 245666643 45441 0135799999999998888776 89
Q ss_pred EEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE--eccccccccce-eeecC
Q 003169 395 FGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM--VGLDQYITKNA-TLTNE 470 (843)
Q Consensus 395 ~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i--~gl~~~~~~tg-TL~~~ 470 (843)
.+||.+|+|+.||.|.+...+ . ..+|.+|.. ...++++|.|||.+++ .|++....+.| .|++.
T Consensus 246 ~G~v~~G~i~~gd~v~i~P~~-----~----~~~VksI~~----~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~ 311 (426)
T TIGR00483 246 VGRVETGVLKPGDKVVFEPAG-----V----SGEVKSIEM----HHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHP 311 (426)
T ss_pred EEEEccceeecCCEEEECCCC-----c----EEEEEEEEE----CCcccCEEcCCCEEEEEECCCChhhcccceEEecC
Confidence 999999999999999986422 1 258888874 3467899999999987 45543334567 77664
No 50
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.96 E-value=6.8e-28 Score=275.92 Aligned_cols=150 Identities=27% Similarity=0.326 Sum_probs=125.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCce-------EeecCccccccccceeeeeeEEEE
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-------RMTDTRQDEAERGITIKSTGISLY 78 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-------~~~D~~~~E~~rgiTi~~~~~~~~ 78 (843)
.....||+++||+|+|||||+++||+.+|.+.+.. .|+. +++|+.++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35567999999999999999999999999987632 4432 489999999999999999888777
Q ss_pred EeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEE
Q 003169 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTV 157 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilvi 157 (843)
++ +++++|||||||.+|..++..+++.+|+|++||||.+|+..||+.++..+...+++ +|+++
T Consensus 104 ~~----------------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvv 167 (474)
T PRK05124 104 TE----------------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAV 167 (474)
T ss_pred cC----------------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEE
Confidence 65 78999999999999999999999999999999999999999999999988888875 67799
Q ss_pred EcCCcccccccCCHHHHHHHHHHHHHHhhhhh
Q 003169 158 NKMDRCFLELQVDGEEAYQTFQKVIENANVIM 189 (843)
Q Consensus 158 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l 189 (843)
||||+. +++. +++.++.+++..++
T Consensus 168 NKiD~~----~~~~----~~~~~i~~~l~~~~ 191 (474)
T PRK05124 168 NKMDLV----DYSE----EVFERIREDYLTFA 191 (474)
T ss_pred Eeeccc----cchh----HHHHHHHHHHHHHH
Confidence 999988 6542 23444444444444
No 51
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.96 E-value=6.5e-27 Score=272.42 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=210.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+.++|+++||+|||||||+++|.... + .....+|+|.+.....+.|. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~--v--------------~~~e~~GIT~~ig~~~v~~~---------------~~ 134 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK--V--------------AQGEAGGITQHIGAYHVENE---------------DG 134 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC--c--------------ccccCCceeecceEEEEEEC---------------CC
Confidence 45689999999999999999994321 1 11123578888777666664 13
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
..++|||||||.+|...+.++++.+|++|+|+|+.+|+.+||.++++++...++|+++++||+|+. +.+++++.+.
T Consensus 135 ~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~----~~~~e~v~~~ 210 (587)
T TIGR00487 135 KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP----EANPDRVKQE 210 (587)
T ss_pred cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc----cCCHHHHHHH
Confidence 389999999999999999999999999999999999999999999999988999999999999998 7765544332
Q ss_pred HHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCce
Q 003169 178 FQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRKW 257 (843)
Q Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~~ 257 (843)
+++ .+.....|. ++. ++...|+..|.++
T Consensus 211 L~~----~g~~~~~~~----~~~-------~~v~iSAktGeGI------------------------------------- 238 (587)
T TIGR00487 211 LSE----YGLVPEDWG----GDT-------IFVPVSALTGDGI------------------------------------- 238 (587)
T ss_pred HHH----hhhhHHhcC----CCc-------eEEEEECCCCCCh-------------------------------------
Confidence 221 111111110 000 1112233221100
Q ss_pred eecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHHH
Q 003169 258 TSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMMI 337 (843)
Q Consensus 258 ~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i~ 337 (843)
..|++.+.
T Consensus 239 ------------------------------------------------------------------------~eLl~~I~ 246 (587)
T TIGR00487 239 ------------------------------------------------------------------------DELLDMIL 246 (587)
T ss_pred ------------------------------------------------------------------------HHHHHhhh
Confidence 01111111
Q ss_pred h--cCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCC
Q 003169 338 F--HLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPN 415 (843)
Q Consensus 338 ~--~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n 415 (843)
. .++.+ ..++++|+.++|+++..++..|. ++++||++|+|+.||.|.+.. .
T Consensus 247 ~~~~~~~l-------------------------~~~~~~~~~~~V~ev~~~~g~G~-v~~~~V~~GtL~~Gd~iv~~~-~ 299 (587)
T TIGR00487 247 LQSEVEEL-------------------------KANPNGQASGVVIEAQLDKGRGP-VATVLVQSGTLRVGDIVVVGA-A 299 (587)
T ss_pred hhhhhccc-------------------------cCCCCCCceeEEEEEEEeCCCcE-EEEEEEEeCEEeCCCEEEECC-C
Confidence 0 00000 12356899999999999888887 999999999999999998532 1
Q ss_pred CCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCC---------------------
Q 003169 416 YVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV--------------------- 473 (843)
Q Consensus 416 ~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~--------------------- 473 (843)
..||..|+... ...+++|.||++|.|.|+++. ..+| +|.-..+.
T Consensus 300 ----------~~kVr~l~~~~---g~~v~~a~~g~~v~i~Gl~~~-p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~ 365 (587)
T TIGR00487 300 ----------YGRVRAMIDEN---GKSVKEAGPSKPVEILGLSDV-PAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR 365 (587)
T ss_pred ----------ccEEEEEECCC---CCCCCEECCCCEEEEeCCCCC-CCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 03566655544 456899999999999999874 3567 66522110
Q ss_pred -CcccccccccC----CCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEE
Q 003169 474 -DAHPIRAMKFS----VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSM 522 (843)
Q Consensus 474 -~~~~~~~~~~~----~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~ 522 (843)
....+..+..+ ..|.+.+.|++......++|.++|.++..++|++.+-.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~viikad~~Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 366 SVKVTLDNLFEQIKEGELKELNIILKADVQGSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred ccccchhHhhhhhhccCCceEEEEEEeCCcchHHHHHHHHHhhcccCCeEEEEE
Confidence 00111222111 24889999999999999999999999999999998743
No 52
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.95 E-value=8.4e-27 Score=263.67 Aligned_cols=134 Identities=25% Similarity=0.294 Sum_probs=104.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe-ec----hhhhhcccc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE-MT----DAALKSYRG 91 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~-~~----~~~~~~~~~ 91 (843)
+...||+++||+|||||||+.+| .| ..+|..++|++||+||+.....+.+. +. ..+...+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aL-----------tg--~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKAL-----------SG--VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHH-----------hC--CCcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 45679999999999999999999 44 24678899999999999887766421 00 000000000
Q ss_pred --------cc----CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-cchhHHHHHHHHHcCCCc-eEEEE
Q 003169 92 --------ER----QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTV 157 (843)
Q Consensus 92 --------~~----~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l~~~~~~~~p-~ilvi 157 (843)
+. ..-...++|||||||.+|..++.+++..+|+|++||||.+| +++||++++..+...+++ +|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 00 01135799999999999999999999999999999999997 799999999998888887 57899
Q ss_pred EcCCcc
Q 003169 158 NKMDRC 163 (843)
Q Consensus 158 NK~D~~ 163 (843)
||||+.
T Consensus 179 NKiDlv 184 (460)
T PTZ00327 179 NKIDLV 184 (460)
T ss_pred eccccc
Confidence 999987
No 53
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.95 E-value=4.5e-26 Score=268.29 Aligned_cols=302 Identities=19% Similarity=0.257 Sum_probs=203.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+.++|+++||+|||||||+++|....... ...+|+|.......+.|.. ++.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~----------------~e~~GiTq~i~~~~v~~~~------------~~~ 293 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ----------------KEAGGITQKIGAYEVEFEY------------KDE 293 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc----------------ccCCccccccceEEEEEEe------------cCC
Confidence 467899999999999999999996543321 2235778776665555541 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQ 176 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~ 176 (843)
+..++|||||||.+|...+.++++.+|++|+|||+.+|+.+||.++|+++...++|+|+++||+|+. +.+.+++.+
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~----~~~~e~v~~ 369 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA----NANTERIKQ 369 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc----ccCHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 665333322
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhccccccCCCCCc
Q 003169 177 TFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATRK 256 (843)
Q Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~~~~~~~~~ 256 (843)
.+. ..+.+...+. +. .++...|+..|.+.
T Consensus 370 eL~----~~~ll~e~~g----~~-------vpvv~VSAktG~GI------------------------------------ 398 (742)
T CHL00189 370 QLA----KYNLIPEKWG----GD-------TPMIPISASQGTNI------------------------------------ 398 (742)
T ss_pred HHH----HhccchHhhC----CC-------ceEEEEECCCCCCH------------------------------------
Confidence 221 1111110000 00 01222333222100
Q ss_pred eeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 003169 257 WTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPASSALLEMM 336 (843)
Q Consensus 257 ~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~~~~LLd~i 336 (843)
..|++.+
T Consensus 399 -------------------------------------------------------------------------deLle~I 405 (742)
T CHL00189 399 -------------------------------------------------------------------------DKLLETI 405 (742)
T ss_pred -------------------------------------------------------------------------HHHHHhh
Confidence 1112222
Q ss_pred HhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCC
Q 003169 337 IFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNY 416 (843)
Q Consensus 337 ~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~ 416 (843)
+.+.+.+ . ..+++++|+.++||++..+++.|. ++++||++|+|+.||.|++.
T Consensus 406 ~~l~e~~----~-------------------lk~~~~~~~~g~V~e~~iD~~~G~-V~~~~V~sGtLr~GD~vv~g---- 457 (742)
T CHL00189 406 LLLAEIE----D-------------------LKADPTQLAQGIILEAHLDKTKGP-VATILVQNGTLHIGDIIVIG---- 457 (742)
T ss_pred hhhhhhh----c-------------------ccCCCCCCceEEEEEEEEcCCCce-EEEEEEEcCEEecCCEEEEC----
Confidence 2111000 0 012456789999999999888887 99999999999999999852
Q ss_pred CCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eeecCCCC-Cc------------------c
Q 003169 417 VPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLTNEKEV-DA------------------H 476 (843)
Q Consensus 417 ~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~~~~~~-~~------------------~ 476 (843)
.+.++++.|.+....++++|.|||+|+|.||++. ..+| +|.-..+. .. .
T Consensus 458 ----------~~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~~-~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~~~~~ 526 (742)
T CHL00189 458 ----------TSYAKIRGMINSLGNKINLATPSSVVEIWGLSSV-PATGEHFQVFNSEKEAKLKIIKNKENNKKDTTKRI 526 (742)
T ss_pred ----------CcceEEEEEEcCCCcCccEEcCCCceEecCcccC-CCCCCEEEEeCCHHHHHHHHHHHHHHHHHhhhccc
Confidence 1456788888888899999999999999999653 4677 55422210 00 0
Q ss_pred cccc----cccCCCceEEEEEEeCCCCChhHHHHHHHHHHh
Q 003169 477 PIRA----MKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAK 513 (843)
Q Consensus 477 ~~~~----~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~ 513 (843)
.+.. +.....+.+.+-|.+....-.+.|..+|.++..
T Consensus 527 ~~~~~~~~~~~~~~~~~~~iiKad~~Gs~EAi~~~l~~~~~ 567 (742)
T CHL00189 527 TLSTTKTINKKDNKKQINLIIKTDTQGSIEAIINSISQIPQ 567 (742)
T ss_pred chHHHHHHhhhcCCceeeEEEEeCCcchHHHHHHHHHhcCC
Confidence 0000 011124567777788888888888888877744
No 54
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.9e-26 Score=251.90 Aligned_cols=288 Identities=24% Similarity=0.333 Sum_probs=210.5
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-----eEeecCccccccccceeeeeeEEEEEe
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
+....|.+++||+|+|||||+++|||..|.+... ..|. .|++|...+||+||+|++.....|+-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3456799999999999999999999999988653 2332 579999999999999999998877643
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcCCCc-
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~~~p- 152 (843)
.+.++|+|+|||.||..+++++...||.|||||||+-| ...||+++...+...|+.
T Consensus 254 ----------------~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~q 317 (603)
T KOG0458|consen 254 ----------------SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQ 317 (603)
T ss_pred ----------------ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcce
Confidence 88999999999999999999999999999999999975 468999999999999996
Q ss_pred eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhh-hccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhh
Q 003169 153 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA-TYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYAS 231 (843)
Q Consensus 153 ~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~ 231 (843)
.|+++||||.. +|+ .+||.++...++.+|. +.+... .++.|.|. ||+.|-..+-.
T Consensus 318 livaiNKmD~V----~Ws----q~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPi-------SGl~GeNL~k~-------- 373 (603)
T KOG0458|consen 318 LIVAINKMDLV----SWS----QDRFEEIKNKLSSFLKESCGFKE-SSVKFIPI-------SGLSGENLIKI-------- 373 (603)
T ss_pred EEEEeeccccc----Ccc----HHHHHHHHHHHHHHHHHhcCccc-CCcceEec-------ccccCCccccc--------
Confidence 77899999999 888 5688889999998883 322111 12344554 34433111100
Q ss_pred hcCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHH
Q 003169 232 KFGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKE 311 (843)
Q Consensus 232 ~~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~ 311 (843)
+ ++..+-++-++
T Consensus 374 -----------------------------~----------------------------~~~~l~~WY~G----------- 385 (603)
T KOG0458|consen 374 -----------------------------E----------------------------QENELSQWYKG----------- 385 (603)
T ss_pred -----------------------------c----------------------------cchhhhhhhcC-----------
Confidence 0 00011111111
Q ss_pred HhhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCc
Q 003169 312 LMGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGR 391 (843)
Q Consensus 312 ~~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~ 391 (843)
..||+.|-. +-.|. + +-+.||++-|..++..+..+
T Consensus 386 ------------------p~LL~~id~-~~~p~------------~-------------~~~kPl~ltIsdi~~~~~~~- 420 (603)
T KOG0458|consen 386 ------------------PTLLSQIDS-FKIPE------------R-------------PIDKPLRLTISDIYPLPSSG- 420 (603)
T ss_pred ------------------ChHHHHHhh-ccCCC------------C-------------cccCCeEEEhhheeecCCCe-
Confidence 255666655 33331 0 12459999999999887766
Q ss_pred eeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eee
Q 003169 392 FFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLT 468 (843)
Q Consensus 392 ~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~ 468 (843)
+..+|||.||.+.+||+||++.+. . ...|..|.. +-.+...+.|||-|.+. |+.....+.| +++
T Consensus 421 ~~i~gkiesG~iq~gqkl~i~~s~-----e----~~~vk~l~~----~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~ 487 (603)
T KOG0458|consen 421 VSISGKIESGYIQPGQKLYIMTSR-----E----DATVKGLTS----NDEPKTWAVAGDNVSLKLPGILPNLVQVGDIAD 487 (603)
T ss_pred eEEEEEEeccccccCCEEEEecCc-----c----eEEEEeeec----CCCcceeEeeCCEEEEecCccChhhcccceeee
Confidence 588999999999999999997532 1 156666653 35677889999998764 6444445666 555
Q ss_pred c
Q 003169 469 N 469 (843)
Q Consensus 469 ~ 469 (843)
+
T Consensus 488 ~ 488 (603)
T KOG0458|consen 488 S 488 (603)
T ss_pred c
Confidence 3
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=3.3e-27 Score=239.49 Aligned_cols=170 Identities=36% Similarity=0.495 Sum_probs=137.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccC--CceEeecCccccccccceeeeeeEEEE--Eeechhhhhccccc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA--GDVRMTDTRQDEAERGITIKSTGISLY--YEMTDAALKSYRGE 92 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~--g~~~~~D~~~~E~~rgiTi~~~~~~~~--~~~~~~~~~~~~~~ 92 (843)
+++|||+++||+|||||||+++|++..+.+..... +..+.+|..++|++||+|++.+...+. +.
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~------------ 68 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN------------ 68 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES------------
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc------------
Confidence 36899999999999999999999999988765311 113468999999999999999998887 54
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHH
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGE 172 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~ 172 (843)
++.++|||||||.+|..++.++++.+|+||+||||.+|+..|++++++++...++|+++|+||||+. ..
T Consensus 69 ----~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~----~~--- 137 (188)
T PF00009_consen 69 ----NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI----EK--- 137 (188)
T ss_dssp ----SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS----HH---
T ss_pred ----ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch----hh---
Confidence 8999999999999999999999999999999999999999999999999999999999999999988 33
Q ss_pred HHHHHHHHHHHHhh-hhhhhccCCCCCCeeeeeccceeeeccCccceEE
Q 003169 173 EAYQTFQKVIENAN-VIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 220 (843)
Q Consensus 173 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 220 (843)
++.+.++++. .++..+... +. ...+|.+.|+..||++
T Consensus 138 ----~~~~~~~~~~~~l~~~~~~~--~~-----~~~~vi~~Sa~~g~gi 175 (188)
T PF00009_consen 138 ----ELEEIIEEIKEKLLKEYGEN--GE-----EIVPVIPISALTGDGI 175 (188)
T ss_dssp ----HHHHHHHHHHHHHHHHTTST--TT-----STEEEEEEBTTTTBTH
T ss_pred ----hHHHHHHHHHHHhccccccC--cc-----ccceEEEEecCCCCCH
Confidence 3445555554 223322111 00 1226888999999965
No 56
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=1e-25 Score=268.39 Aligned_cols=148 Identities=29% Similarity=0.366 Sum_probs=124.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccc----------cCCc-------eEeecCccccccccceeeeeeEEEEEee
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE----------VAGD-------VRMTDTRQDEAERGITIKSTGISLYYEM 81 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~g~-------~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 81 (843)
..||+++||+|||||||+++|++..|.+... ..|+ .+++|..++|++||+|++.+...+.|.
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~- 102 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP- 102 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC-
Confidence 4479999999999999999999999988742 3454 258999999999999999998888775
Q ss_pred chhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcC
Q 003169 82 TDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKM 160 (843)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~ 160 (843)
+.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...+++ +|+++|||
T Consensus 103 ---------------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 103 ---------------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM 167 (632)
T ss_pred ---------------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence 78899999999999999999999999999999999999999999999998888865 66799999
Q ss_pred CcccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003169 161 DRCFLELQVDGEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (843)
|+. +++.+ ++.++..++..++.
T Consensus 168 D~~----~~~~~----~~~~i~~~i~~~~~ 189 (632)
T PRK05506 168 DLV----DYDQE----VFDEIVADYRAFAA 189 (632)
T ss_pred ccc----cchhH----HHHHHHHHHHHHHH
Confidence 987 54422 34445555554443
No 57
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.93 E-value=7.2e-25 Score=257.28 Aligned_cols=115 Identities=32% Similarity=0.420 Sum_probs=101.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++||+|||||||+++| .| ..+|..++|++||+|++.....+... ++..+
T Consensus 2 ii~~~GhvdhGKTtLi~aL-----------tg--~~~dr~~eE~~rGiTI~l~~~~~~~~---------------~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAI-----------TG--VNADRLPEEKKRGMTIDLGYAYWPQP---------------DGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hC--CCCccchhcccCCceEEeeeEEEecC---------------CCcEE
Confidence 5899999999999999999 33 23688889999999998876655432 25679
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK~D~~ 163 (843)
+|||||||.+|...+.+++..+|++++|||+.+|+.+||++++..+...++|. |+|+||||+.
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 99999999999999999999999999999999999999999999988889885 6899999987
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.93 E-value=1.1e-25 Score=228.70 Aligned_cols=166 Identities=25% Similarity=0.333 Sum_probs=130.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||+++||+|||||||+++|++......+........+|+.++|++||+|++++...+.++ +.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------~~~ 66 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA----------------NRH 66 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC----------------CeE
Confidence 5899999999999999999998753222111111347899999999999999988777664 789
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcccccccCCHHHHHHHH
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~~~~~~~~~~~~~~~ 178 (843)
++|||||||.+|..++.++++.+|+|++|||+.+|+..|++.+|+.+...++| +|+|+||||+. .. ++ .+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~----~~--~~---~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV----DD--EE---LL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC----Cc--HH---HH
Confidence 99999999999999999999999999999999999999999999999999998 66899999986 31 22 23
Q ss_pred HHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccce
Q 003169 179 QKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW 218 (843)
Q Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~ 218 (843)
+.+.+++...+..+. +.+...++.+.|++.|+
T Consensus 138 ~~~~~~i~~~l~~~g--------~~~~~v~iipiSa~~g~ 169 (195)
T cd01884 138 ELVEMEVRELLSKYG--------FDGDNTPIVRGSALKAL 169 (195)
T ss_pred HHHHHHHHHHHHHhc--------ccccCCeEEEeeCcccc
Confidence 334445555554322 22333467778888776
No 59
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.93 E-value=1.8e-24 Score=244.24 Aligned_cols=136 Identities=28% Similarity=0.360 Sum_probs=106.3
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhh-h-hccccc
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA-L-KSYRGE 92 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~-~-~~~~~~ 92 (843)
+.++..||+++||+|||||||+++| .| .++|..++|++||+|+..+...+.|...... . ..+...
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L-----------~~--~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~ 71 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQAL-----------TG--VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTE 71 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHh-----------hC--eecccCHhHHhcCcEEEecccccccccccccCcccccccc
Confidence 3455679999999999999999999 33 3589999999999999987665555310000 0 000000
Q ss_pred --------cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCCc-eEEEEEcCCc
Q 003169 93 --------RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDR 162 (843)
Q Consensus 93 --------~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~p-~ilviNK~D~ 162 (843)
.....+.++|||||||.+|..++..++..+|++++|+|+.+|. ..++..++..+...+++ +++++||+|+
T Consensus 72 ~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 72 PKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 0011468999999999999999999999999999999999998 89999999888777775 7889999998
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 152 ~ 152 (411)
T PRK04000 152 V 152 (411)
T ss_pred c
Confidence 7
No 60
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.92 E-value=8.6e-24 Score=238.93 Aligned_cols=133 Identities=29% Similarity=0.362 Sum_probs=104.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhh--hhcccc--cc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAA--LKSYRG--ER 93 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~--~~~~~~--~~ 93 (843)
...||+++||+|||||||+++| .| ..+|..++|++||+|++.....+.+...... ...+.. ..
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~L-----------t~--~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKAL-----------TG--VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHH-----------hC--eecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 4569999999999999999999 33 3478899999999999988766654310000 000000 00
Q ss_pred C------CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCCc-eEEEEEcCCcc
Q 003169 94 Q------GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 94 ~------~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~p-~ilviNK~D~~ 163 (843)
+ .....++|||||||.+|...+.++++.+|++++|||+.+|. ..||++++..+...+++ +++++||+|+.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence 1 12468999999999999999999999999999999999998 89999999988878775 67899999987
No 61
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.91 E-value=7.5e-23 Score=239.78 Aligned_cols=114 Identities=36% Similarity=0.446 Sum_probs=103.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++||+|||||||+++| .|. .+|..++|+++|+|++.....+.+. +..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aL-----------tg~--~~d~~~eE~~rGiTid~~~~~~~~~----------------~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKAL-----------TGI--AADRLPEEKKRGMTIDLGFAYFPLP----------------DYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHH-----------hCc--cCcCChhHhcCCceEEeEEEEEEeC----------------CEEE
Confidence 7999999999999999999 331 2577788999999999887776664 5899
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~ 163 (843)
+|||||||.+|...+..++..+|++++|||+.+|+.+||.+++..+...++| +|+++||||+.
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999988889999 89999999987
No 62
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.4e-23 Score=218.22 Aligned_cols=152 Identities=27% Similarity=0.341 Sum_probs=128.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc-------------cCCc----eEeecCccccccccceeeeeeEEEEE
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-------------VAGD----VRMTDTRQDEAERGITIKSTGISLYY 79 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-------------~~g~----~~~~D~~~~E~~rgiTi~~~~~~~~~ 79 (843)
+...++..+|++|.|||||+.+||+.+..+-.. ..|+ .-..|-.+.|++.||||+.++..|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345689999999999999999999998766332 1111 12578899999999999999887766
Q ss_pred eechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEE
Q 003169 80 EMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVN 158 (843)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviN 158 (843)
+ ..+|.+.|||||+.|+..|.++.+-||.||++|||..|+..||++|.-.+...+++. ++++|
T Consensus 84 ~----------------KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVN 147 (431)
T COG2895 84 E----------------KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVN 147 (431)
T ss_pred c----------------cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEe
Confidence 5 778999999999999999999999999999999999999999999999998999985 57999
Q ss_pred cCCcccccccCCHHHHHHHHHHHHHHhhhhhhhc
Q 003169 159 KMDRCFLELQVDGEEAYQTFQKVIENANVIMATY 192 (843)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 192 (843)
|||+. +++ .++|+++.++...+....
T Consensus 148 KmDLv----dy~----e~~F~~I~~dy~~fa~~L 173 (431)
T COG2895 148 KMDLV----DYS----EEVFEAIVADYLAFAAQL 173 (431)
T ss_pred eeccc----ccC----HHHHHHHHHHHHHHHHHc
Confidence 99999 887 456777877777776553
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.8e-22 Score=204.99 Aligned_cols=329 Identities=23% Similarity=0.296 Sum_probs=211.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe-echhhh------hcc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE-MTDAAL------KSY 89 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~-~~~~~~------~~~ 89 (843)
+.--||+++||+|||||||+.+| .| .-+|...+|.+|||||+..++...+. +.+ +. .+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al-----------sG--vwT~~hseElkRgitIkLGYAd~~i~kC~~-c~~~~~y~~~~ 73 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL-----------SG--VWTDRHSEELKRGITIKLGYADAKIYKCPE-CYRPECYTTEP 73 (415)
T ss_pred CcceEeeeeeecccchhhheehh-----------hc--eeeechhHHHhcCcEEEeccccCceEeCCC-CCCCcccccCC
Confidence 45679999999999999999999 66 45788999999999999887765532 211 11 111
Q ss_pred ccccC----CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-cchhHHHHHHHHHcCCCc-eEEEEEcCCcc
Q 003169 90 RGERQ----GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 90 ~~~~~----~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l~~~~~~~~p-~ilviNK~D~~ 163 (843)
.++.. .--.++.|+|+|||.-++..+.++...+|||+|||+|++. .++||++++-.+.-.+++ +|++-||+|+.
T Consensus 74 ~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 74 KCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 11111 1235799999999999999999999999999999999986 689999999888888887 66899999988
Q ss_pred cccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHh
Q 003169 164 FLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMER 243 (843)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~ 243 (843)
+.+++.++++++.+.+.-... .+.+|.--|+.
T Consensus 154 ------~~E~AlE~y~qIk~FvkGt~A--------------e~aPIIPiSA~---------------------------- 185 (415)
T COG5257 154 ------SRERALENYEQIKEFVKGTVA--------------ENAPIIPISAQ---------------------------- 185 (415)
T ss_pred ------cHHHHHHHHHHHHHHhccccc--------------CCCceeeehhh----------------------------
Confidence 455666666665553321110 00011111110
Q ss_pred hccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHH
Q 003169 244 LWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQ 323 (843)
Q Consensus 244 ~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~ 323 (843)
.+ .
T Consensus 186 -------------------------------------------------------~~--~-------------------- 188 (415)
T COG5257 186 -------------------------------------------------------HK--A-------------------- 188 (415)
T ss_pred -------------------------------------------------------hc--c--------------------
Confidence 00 0
Q ss_pred hhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCC--------CceeEE
Q 003169 324 TWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDK--------GRFFAF 395 (843)
Q Consensus 324 ~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~--------g~~l~~ 395 (843)
.+..|+++|.+|+|.|. .|.+.|..+||...+..+.. |. +.=
T Consensus 189 ----NIDal~e~i~~~IptP~-------------------------rd~~~~p~m~v~RSFDVNkPGt~~~~L~GG-ViG 238 (415)
T COG5257 189 ----NIDALIEAIEKYIPTPE-------------------------RDLDKPPRMYVARSFDVNKPGTPPEELKGG-VIG 238 (415)
T ss_pred ----CHHHHHHHHHHhCCCCc-------------------------cCCCCCceEEEEeecccCCCCCCHHHccCc-eec
Confidence 12678999999999993 14567788888888754433 33 555
Q ss_pred EEEEeeEecCCCEEEEcCCCCC--CCCccc--cceeeeceEEEEecCCeeeeccccCCCEEEEe-ccccccccceeeecC
Q 003169 396 GRVFSGKVATGLKVRIMGPNYV--PGEKKD--LYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV-GLDQYITKNATLTNE 470 (843)
Q Consensus 396 ~RV~sG~L~~g~~l~v~~~n~~--~~~~~~--~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~-gl~~~~~~tgTL~~~ 470 (843)
+-+.+|.|+.||.+-+-. ... .+++-. ....+|.+|+ + ...++++|.+|-.++|. +|+.++++..-|+..
T Consensus 239 Gsl~~G~l~vGDEIEIrP-Gi~v~k~~k~~~~pi~T~i~Sl~---a-g~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~ 313 (415)
T COG5257 239 GSLVQGVLRVGDEIEIRP-GIVVEKGGKTVWEPITTEIVSLQ---A-GGEDVEEARPGGLVGVGTKLDPTLTKADALVGQ 313 (415)
T ss_pred ceeeeeeEecCCeEEecC-CeEeecCCceEEEEeeEEEEEEE---e-CCeeeeeccCCceEEEecccCcchhhhhhhccc
Confidence 778899999999998632 211 111100 0012344443 3 44678999999888874 677766554433221
Q ss_pred CCCCcccccccccCCCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEcCCCceEEEechh
Q 003169 471 KEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGE 535 (843)
Q Consensus 471 ~~~~~~~~~~~~~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~etge~ii~g~GE 535 (843)
..=.+=..| +...++.+|.. -|.|+.-.+-.+.|+.-.++|.++...|-
T Consensus 314 -----V~G~pG~lP-pv~~~~~ie~~----------LL~RvvG~~~e~kvepik~~E~Lml~VGt 362 (415)
T COG5257 314 -----VVGKPGTLP-PVWTSIRIEYH----------LLERVVGTKEELKVEPIKTNEVLMLNVGT 362 (415)
T ss_pred -----cccCCCCCC-CceEEEEEEee----------ehhhhhCcccccccccccCCCeEEEEeec
Confidence 000111122 44455555532 24444444555666544678888777664
No 64
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.90 E-value=1.6e-23 Score=215.86 Aligned_cols=146 Identities=27% Similarity=0.311 Sum_probs=120.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCC---------------ceEeecCccccccccceeeeeeEEEEEeechhh
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG---------------DVRMTDTRQDEAERGITIKSTGISLYYEMTDAA 85 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g---------------~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
||+|+||+|||||||+++|++.+|.+.....| ..+++|+.++|++||+|+++....+.|.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 68999999999999999999999998742111 1468999999999999999998888775
Q ss_pred hhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCccc
Q 003169 86 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCF 164 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~~ 164 (843)
+..++|||||||.+|..++..+++.+|++|+|+|+++|+..+++.++..+...+.| +|+|+||+|+.
T Consensus 76 -----------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~- 143 (208)
T cd04166 76 -----------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV- 143 (208)
T ss_pred -----------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc-
Confidence 78999999999999999999999999999999999999999999888888777776 56689999987
Q ss_pred ccccCCHHHHHHHHHHHHHHhhhhhh
Q 003169 165 LELQVDGEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (843)
+.+.+ .+..+..+++.++.
T Consensus 144 ---~~~~~----~~~~i~~~~~~~~~ 162 (208)
T cd04166 144 ---DYSEE----VFEEIVADYLAFAA 162 (208)
T ss_pred ---cCCHH----HHHHHHHHHHHHHH
Confidence 65422 23344444444443
No 65
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.90 E-value=1.1e-23 Score=218.88 Aligned_cols=170 Identities=28% Similarity=0.366 Sum_probs=132.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCce-----EeecCccccccccceeeeeeEEEEEeechhh
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGDV-----RMTDTRQDEAERGITIKSTGISLYYEMTDAA 85 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~~-----~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
||+++||+|||||||+++|++.+|.+.+.. .|.. +++|+.++|++||+|+++....+.|.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 799999999999999999999999987632 2332 37999999999999999999998886
Q ss_pred hhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCC-------ccchhHHHHHHHHHcCCC-ceEEEE
Q 003169 86 LKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-------GVCVQTETVLRQALGERI-RPVLTV 157 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-------gv~~~t~~~l~~~~~~~~-p~ilvi 157 (843)
++++++||||||.+|..++..+++.+|++|+|||+.+ ++..++..++..+...++ |+++|+
T Consensus 76 -----------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivv 144 (219)
T cd01883 76 -----------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAV 144 (219)
T ss_pred -----------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEE
Confidence 8899999999999999999999999999999999999 577899999888877775 567799
Q ss_pred EcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEE
Q 003169 158 NKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 220 (843)
Q Consensus 158 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 220 (843)
||||+. +++.. ...+.++.++++..+..+. +.+...++...|+..|.+.
T Consensus 145 NK~Dl~----~~~~~--~~~~~~i~~~l~~~l~~~~--------~~~~~~~ii~iSA~tg~gi 193 (219)
T cd01883 145 NKMDDV----TVNWS--EERYDEIKKELSPFLKKVG--------YNPKDVPFIPISGLTGDNL 193 (219)
T ss_pred Eccccc----ccccc--HHHHHHHHHHHHHHHHHcC--------CCcCCceEEEeecCcCCCC
Confidence 999988 53211 1234455555555554322 1112234666777766544
No 66
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.6e-22 Score=217.68 Aligned_cols=125 Identities=29% Similarity=0.425 Sum_probs=107.4
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+...|.|+||+|||||||+++|-...-+. .+.| |||-.....+.... ++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~G--------------GITQhIGAF~V~~p---------------~G 200 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAG--------------GITQHIGAFTVTLP---------------SG 200 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh--hhcC--------------CccceeceEEEecC---------------CC
Confidence 35689999999999999999994443222 2255 77877776666554 47
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
..|+|+|||||.-|.....++...+|.+||||.|.+|+.+||.+.+.+|+..++|+|+++||+|++ +++|+.+++.
T Consensus 201 ~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp----~a~pekv~~e 276 (683)
T KOG1145|consen 201 KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKP----GANPEKVKRE 276 (683)
T ss_pred CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999 9998876543
No 67
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.88 E-value=3.4e-22 Score=209.20 Aligned_cols=300 Identities=23% Similarity=0.342 Sum_probs=212.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeec-hhhhhccccc----
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT-DAALKSYRGE---- 92 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-~~~~~~~~~~---- 92 (843)
..-+|++.||+|||||||+.+| .+|..+...-+...++|..+.|.+||.|-+.+..-+.|+.. .-.++++...
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred ceEEEEEeccccCCcceEEEEE--EecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 3569999999999999999999 55655554333456899999999999999888877777632 2223333222
Q ss_pred --cCCCceEEEEEcCCCCccchHHHHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccccccc
Q 003169 93 --RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
Q Consensus 93 --~~~~~~~i~liDTPGh~df~~e~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~ 168 (843)
.+..+..+.|+||-||+.|...+++++ +..|..+|||.|.+|++..|++++..+....+|+|++++|+|+. .
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~----~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMV----P 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccC----c
Confidence 133457899999999999999999999 68999999999999999999999999999999999999999987 3
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhcccc
Q 003169 169 VDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w~~~ 248 (843)
- ++++.+++++..+|...+ .+|+--. . .|...+....-
T Consensus 270 d------dr~~~v~~ei~~~Lk~v~--------------Rip~~vk-----------------~--~~d~v~aa~a~--- 307 (527)
T COG5258 270 D------DRFQGVVEEISALLKRVG--------------RIPLIVK-----------------D--TDDVVLAAKAM--- 307 (527)
T ss_pred H------HHHHHHHHHHHHHHHHhc--------------ccceeee-----------------c--cchhHHhhhhh---
Confidence 2 367788888877775421 1221100 0 00000000000
Q ss_pred ccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhhccc
Q 003169 249 FFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTWLPA 328 (843)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~~P~ 328 (843)
+.+ +..+|+
T Consensus 308 ----k~~-------------------------------------------------------------------~~vvPi 316 (527)
T COG5258 308 ----KAG-------------------------------------------------------------------RGVVPI 316 (527)
T ss_pred ----hcC-------------------------------------------------------------------CceEEE
Confidence 000 001111
Q ss_pred ---------hHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEE
Q 003169 329 ---------SSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
Q Consensus 329 ---------~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~ 399 (843)
--.||+-+...||.-. ..+.++||.+||.|+|.....|. ++.+-|-
T Consensus 317 ~~tSsVTg~GldlL~e~f~~Lp~rr------------------------~~~d~g~flmYId~iYsVtGVGt-VvsGsV~ 371 (527)
T COG5258 317 FYTSSVTGEGLDLLDEFFLLLPKRR------------------------RWDDEGPFLMYIDKIYSVTGVGT-VVSGSVK 371 (527)
T ss_pred EEEecccCccHHHHHHHHHhCCccc------------------------ccCCCCCeEEEEEeeEEEeeeEE-EEeeeEE
Confidence 1245666666676531 12456899999999999988887 8999999
Q ss_pred eeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeecC
Q 003169 400 SGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTNE 470 (843)
Q Consensus 400 sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~~ 470 (843)
||.|+.||+|++ ||+.+ -++.+.+|++|-. +...|++|.||+|+.++ |+..--...| .|+..
T Consensus 372 ~G~l~~gd~vll-GP~~~----G~fr~v~vkSIem----h~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~ 436 (527)
T COG5258 372 SGILHVGDTVLL-GPFKD----GKFREVVVKSIEM----HHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG 436 (527)
T ss_pred eeeeccCCEEEE-ccCCC----CcEEEEEEEEEEE----eeEEeccccCCcEEEEEecccCHHHHhcceEecCC
Confidence 999999999985 55522 2355678888875 67789999999997664 7655333556 55543
No 68
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.88 E-value=3.2e-23 Score=178.67 Aligned_cols=80 Identities=54% Similarity=1.049 Sum_probs=76.3
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|||+||++++|+|+++|++|||+|++++..+++..+.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998887765558999999999999999999999999999999999999986
No 69
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.3e-21 Score=208.07 Aligned_cols=114 Identities=37% Similarity=0.456 Sum_probs=104.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+..||++||||||+.++ .| ..+|..++|++||+||+....++... ++.+
T Consensus 2 ii~t~GhidHgkT~L~~al-----------tg--~~~d~l~EekKRG~TiDlg~~y~~~~----------------d~~~ 52 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKAL-----------TG--GVTDRLPEEKKRGITIDLGFYYRKLE----------------DGVM 52 (447)
T ss_pred eEEEeeeeeccchhhhhhh-----------cc--cccccchhhhhcCceEeeeeEeccCC----------------CCce
Confidence 5899999999999999999 44 46899999999999999887766554 6699
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK~D~~ 163 (843)
.|||+|||+||...+..++...|.|+||||+.+|+.+||.+++..+...+++. ++|+||+|+.
T Consensus 53 ~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 53 GFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred EEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999986 7899999977
No 70
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.4e-21 Score=212.48 Aligned_cols=127 Identities=29% Similarity=0.410 Sum_probs=105.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..-|+++||+|||||||++.+-.. .+...++| |||-......+.++. .+..
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t--~Va~~EaG--------------GITQhIGA~~v~~~~-------------~~~~ 55 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKT--NVAAGEAG--------------GITQHIGAYQVPLDV-------------IKIP 55 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcC--ccccccCC--------------ceeeEeeeEEEEecc-------------CCCc
Confidence 446899999999999999999332 23333355 678777776666530 0246
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHH
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 178 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~ 178 (843)
.+.|||||||.-|+..-.++...+|.|+||||+.+|+.+||.+.+.+++..++|+++++||||++ +++|+.....+
T Consensus 56 ~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~----~~np~~v~~el 131 (509)
T COG0532 56 GITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKP----EANPDKVKQEL 131 (509)
T ss_pred eEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCC----CCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999 88877655443
No 71
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.6e-22 Score=208.63 Aligned_cols=290 Identities=21% Similarity=0.288 Sum_probs=202.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCcccccc----------CCc-----eEeecCccccccccceeeeeeEEEEEe
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AGD-----VRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
+....|++++||+++||||+-+.+++.+|.++.+. .++ .|++|+..+|+++|-|+....+.|...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 35567999999999999999999999999886641 111 579999999999999999999998876
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-------chhHHHHHHHHHcCCCc-
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-------CVQTETVLRQALGERIR- 152 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-------~~~t~~~l~~~~~~~~p- 152 (843)
..+++++|+|||..|..+++.++..||.+++|++|..|- ..||+++...++..++.
T Consensus 156 ----------------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~ 219 (501)
T KOG0459|consen 156 ----------------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 219 (501)
T ss_pred ----------------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccce
Confidence 789999999999999999999999999999999998753 46999999999989987
Q ss_pred eEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEEeehhHHHHHhhh
Q 003169 153 PVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASK 232 (843)
Q Consensus 153 ~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~~~~~~a~~~~~~ 232 (843)
.|+++||||-+..++. .++++++.+.+..+|.........+..|.|. |+..|-.. + ++
T Consensus 220 lVv~vNKMddPtvnWs------~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~-------sg~tG~~~--k---~~---- 277 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWS------NERYEECKEKLQPFLRKLGFNPKPDKHFVPV-------SGLTGANV--K---DR---- 277 (501)
T ss_pred EEEEEEeccCCccCcc------hhhHHHHHHHHHHHHHHhcccCCCCceeeec-------ccccccch--h---hc----
Confidence 6679999998843332 3467777777666665322111122223332 22222100 0 00
Q ss_pred cCCCHHHHHHhhccccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHH
Q 003169 233 FGVDESKMMERLWGENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKEL 312 (843)
Q Consensus 233 ~~i~~~~l~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~ 312 (843)
.+ + .--| |..
T Consensus 278 --~~--s--~cpw----y~g------------------------------------------------------------ 287 (501)
T KOG0459|consen 278 --TD--S--VCPW----YKG------------------------------------------------------------ 287 (501)
T ss_pred --cc--c--cCCc----ccC------------------------------------------------------------
Confidence 00 0 0001 000
Q ss_pred hhHHHHHHHHHhhccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCce
Q 003169 313 MGKALMKRVMQTWLPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRF 392 (843)
Q Consensus 313 ~~~~l~~~i~~~~~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~ 392 (843)
..+|..+.+ +|++. -+.++|+.+-|..-+. +.|.
T Consensus 288 -----------------p~fl~~ld~-l~~~~-------------------------R~~~GP~~~pI~~Kyk--dmGT- 321 (501)
T KOG0459|consen 288 -----------------PIFLEYLDE-LPHLE-------------------------RILNGPIRCPVANKYK--DMGT- 321 (501)
T ss_pred -----------------Cccceehhc-cCccc-------------------------ccCCCCEEeehhhhcc--ccce-
Confidence 001111111 34431 1356888877765443 4465
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--ccccccccce-eeec
Q 003169 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GLDQYITKNA-TLTN 469 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl~~~~~~tg-TL~~ 469 (843)
+.+++|-||+++.||.+.++..+ . ...|..||- +-.+++++.+|+.+-++ |++.-....| .||+
T Consensus 322 vv~GKvEsGsi~kg~~lvvMPnk-----~----~veV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~ 388 (501)
T KOG0459|consen 322 VVGGKVESGSIKKGQQLVVMPNK-----T----NVEVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPGFILCS 388 (501)
T ss_pred EEEEEecccceecCCeEEEccCC-----c----ceEEEEEec----ccceeeeccCCcceEEEecccchhhccCceEEec
Confidence 99999999999999999998522 2 156777763 56789999999998765 7776666778 8898
Q ss_pred CCC
Q 003169 470 EKE 472 (843)
Q Consensus 470 ~~~ 472 (843)
+.+
T Consensus 389 ~~n 391 (501)
T KOG0459|consen 389 PNN 391 (501)
T ss_pred CCC
Confidence 765
No 72
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=5.7e-21 Score=194.77 Aligned_cols=143 Identities=40% Similarity=0.658 Sum_probs=119.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.+|||+++|+.|+|||||+++|++..+.+.....-..+.+|+.+.|..+|+|+......+.+. +
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~----------------~ 64 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK----------------D 64 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC----------------C
Confidence 479999999999999999999998777665532112356888899999999999888777775 7
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQT 177 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~ 177 (843)
+.++|||||||.+|...+..+++.+|++++|+|++++...+++.+++.+...++|+++++||+|+. ....+...+.
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~ 140 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP----DARPEEVVDE 140 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC----CCCHHHHHHH
Confidence 899999999999999999999999999999999999988888888888877899999999999997 5554433333
Q ss_pred HHH
Q 003169 178 FQK 180 (843)
Q Consensus 178 ~~~ 180 (843)
+.+
T Consensus 141 ~~~ 143 (194)
T cd01891 141 VFD 143 (194)
T ss_pred HHH
Confidence 333
No 73
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=3.4e-20 Score=216.89 Aligned_cols=125 Identities=29% Similarity=0.301 Sum_probs=87.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE------eecCccccccccceeeeeeEEEEEeechhhhhccccc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR------MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~------~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
...|+++||+|||||||+++|....... ..+|..+ +.+....++.+|.+..... ..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~--~~~------------- 68 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLP--IKL------------- 68 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccc--ccc-------------
Confidence 4479999999999999999995443211 1122110 1111111111111111000 000
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+-..++|||||||.+|...+.++++.+|++++|+|+++|+..||..++..+...++|+++++||+|+.
T Consensus 69 ---~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 69 ---KIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred ---ccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 00137999999999999999999999999999999999999999999999888999999999999985
No 74
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=5.6e-21 Score=168.65 Aligned_cols=85 Identities=39% Similarity=0.535 Sum_probs=79.3
Q ss_pred eeeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEeccee
Q 003169 724 RLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWD 803 (843)
Q Consensus 724 ~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 803 (843)
+||||||+++|.+|++++|+|+++|++|||+|+++... +++++.|+|.+|+++++||.++||++|+|+|+|+++|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999987 34799999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 003169 804 MMSSDP 809 (843)
Q Consensus 804 ~v~~d~ 809 (843)
++++++
T Consensus 80 ~~~~~~ 85 (89)
T PF00679_consen 80 PVPGDI 85 (89)
T ss_dssp EESHHH
T ss_pred ECCCCh
Confidence 999985
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=9.2e-20 Score=182.94 Aligned_cols=132 Identities=45% Similarity=0.696 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|||+++||+|+|||||+++|++..|.+.+. .....++|+.+.|+++|+|.....+.+.|.. .+++++.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------~~~~~~~ 68 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKA-----------KDGQEYL 68 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEec-----------CCCCcEE
Confidence 899999999999999999999998877652 1224688999999999999998877776641 1235788
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++|||||||.+|...+..+++.+|++|+|+|++++...++...|..+...++|+++++||+|+.
T Consensus 69 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 69 LNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred EEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999998888888887777889999999999987
No 76
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=4.2e-21 Score=168.05 Aligned_cols=83 Identities=36% Similarity=0.569 Sum_probs=78.3
Q ss_pred eeeceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceee
Q 003169 725 LLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDM 804 (843)
Q Consensus 725 LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 804 (843)
||||||+|+|.||++++|+|+++|++|||+|++++..+ +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRG--GAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccC--CcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 69999999999999999999999999999999888643 5789999999999999999999999999999999999999
Q ss_pred cCCCC
Q 003169 805 MSSDP 809 (843)
Q Consensus 805 v~~d~ 809 (843)
+|+++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 99764
No 77
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.82 E-value=1.7e-20 Score=162.25 Aligned_cols=80 Identities=66% Similarity=1.204 Sum_probs=76.2
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|++|++++|+|+++|++|||.|++++..++++.+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999998876655669999999999999999999999999999999999999986
No 78
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.81 E-value=2.6e-20 Score=160.14 Aligned_cols=78 Identities=26% Similarity=0.529 Sum_probs=74.7
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|+||++++|+|+++|++|||+|.+++..+ +.+.|+|++|++|++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGE--DEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecC--CeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999998654 578999999999999999999999999999999999999986
No 79
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=1.6e-19 Score=185.45 Aligned_cols=131 Identities=27% Similarity=0.273 Sum_probs=103.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech----hhhh-------c
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD----AALK-------S 88 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----~~~~-------~ 88 (843)
+||+++||.|||||||+++| .| ..+|+.+.|.+||+|+..+...+.|.... .... .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l-----------~~--~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKAL-----------SG--VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHH-----------hC--CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 58999999999999999999 33 34788899999999999998888774100 0000 0
Q ss_pred ccc------ccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-cchhHHHHHHHHHcCCC-ceEEEEEcC
Q 003169 89 YRG------ERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERI-RPVLTVNKM 160 (843)
Q Consensus 89 ~~~------~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l~~~~~~~~-p~ilviNK~ 160 (843)
... +.....++++|||||||.+|..++..+++.+|++++|+|+.++ ...++..+|..+...++ |+++++||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 000 0111237899999999999999999999999999999999984 67888888888776776 477899999
Q ss_pred Ccc
Q 003169 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 148 Dl~ 150 (203)
T cd01888 148 DLV 150 (203)
T ss_pred hcc
Confidence 987
No 80
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.81 E-value=9.9e-20 Score=170.57 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=87.4
Q ss_pred hhcCCcccccceEEEeccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeecccccccc
Q 003169 622 EEFGWDKDLAKKIWCFGPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHR 701 (843)
Q Consensus 622 ~~~~~~~~~~~~i~~~~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~ 701 (843)
.++||+..+++.+|.++|...++|.|++.+.+..++++++++|++||++|+++|||+|+||.||+|+|.|+.+|. .++
T Consensus 22 ~~~g~~~~~a~v~~~~~P~~~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 99 (120)
T PF03764_consen 22 RQYGGKRQFAKVILRVEPLEGGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHE--VDS 99 (120)
T ss_dssp EECTSSEEEEEEEEEEEETSTSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-T--TTB
T ss_pred HHhCCCCceEEEEEEEeecccCCceeeeccccccccHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecC--CcC
Confidence 357888888899999999886689999999999999999999999999999999999999999999999999996 334
Q ss_pred CCCchHHHHHHHHHHHHhhcC
Q 003169 702 GGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 702 ~~~~i~~a~~~a~~~a~~~a~ 722 (843)
+..+|++|+++||++||++|+
T Consensus 100 ~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 100 SPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 456789999999999999985
No 81
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.80 E-value=6.7e-20 Score=155.64 Aligned_cols=73 Identities=41% Similarity=0.674 Sum_probs=68.4
Q ss_pred CCceEEEEEEeCCCCChhHHHHHHHHHHhcCCcEEEEEc-CCCceEEEechhhHHHHHHHHHHhhccCCeeEEEcC
Q 003169 485 VSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSME-ESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSD 559 (843)
Q Consensus 485 ~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDPsl~v~~~-etge~ii~g~GElHLei~~~rL~~~f~~~v~v~~~~ 559 (843)
|+|+++++|+|.++.|.++|.+||++|.+|||+|++.+| +|||++|+||||+||||+++||+++| |++|++++
T Consensus 2 p~Pv~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~--~v~v~~~~ 75 (75)
T PF14492_consen 2 PPPVLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRF--GVEVEFGK 75 (75)
T ss_dssp SS-SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTT--CEBEEEE-
T ss_pred CCCeEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHH--CCeeEecC
Confidence 499999999999999999999999999999999999998 89999999999999999999999999 99999874
No 82
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=1.1e-17 Score=195.01 Aligned_cols=129 Identities=29% Similarity=0.307 Sum_probs=89.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccc--cccCCC
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR--GERQGN 96 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~--~~~~~~ 96 (843)
..-|+++||+|||||||+++|.+..-.. ..+| |+|.......+.+........... .....+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~g--------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~ 67 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAG--------------GITQHIGATEIPMDVIEGICGDLLKKFKIRLK 67 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc--ccCC--------------ceecccCeeEeeeccccccccccccccccccc
Confidence 3469999999999999999996543211 1122 233322222222210000000000 000001
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...+.|||||||.+|.....++++.+|++++|+|+++|+.+||..++..+...++|+++++||+|+.
T Consensus 68 ~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 68 IPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred cCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 1248999999999999999999999999999999999999999999998888899999999999986
No 83
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.80 E-value=4.8e-20 Score=158.50 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=74.3
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|+||++++|+|+++|++|||+|.+.+..+ +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++|.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKG--DEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecC--CEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999888654 589999999999999999999999999999999999999984
No 84
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.6e-18 Score=177.64 Aligned_cols=129 Identities=28% Similarity=0.367 Sum_probs=106.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..|++++||+|+|||||+.+|-. .|.+..-|..++..+||+|.+...-.+.... +. .-..+...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~---------~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~-pa------rLpq~e~l 70 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSE---------LGSTAAFDKHPQSTERGITLDLGFSTMTVLS-PA------RLPQGEQL 70 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHh---------hccchhhccCCcccccceeEeecceeeeccc-cc------ccCccccc
Confidence 46999999999999999999932 3444567888889999999998765554331 01 11233457
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+++|+|||||..++..++.+..+.|.+++|||+..|.++||.+.+-.....-.+.++++||+|..
T Consensus 71 q~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~l 135 (522)
T KOG0461|consen 71 QFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVL 135 (522)
T ss_pred eeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccc
Confidence 89999999999999999999999999999999999999999998877777777899999999976
No 85
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=9.1e-20 Score=156.97 Aligned_cols=78 Identities=32% Similarity=0.578 Sum_probs=74.5
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|+||++++|+|+++|++|||.|++++..+ +.+.|+|.+|++|++||.++||++|+|+|+++++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~--~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRG--GWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccC--CcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999988653 578999999999999999999999999999999999999986
No 86
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.78 E-value=2.7e-19 Score=154.10 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=73.9
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeec
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
||||+++|.||++++|+|+++|++|||+|.+.+..+ .+.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDG-NGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECC-CCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999988754 257899999999999999999999999999999999999985
No 87
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=7.8e-19 Score=182.26 Aligned_cols=156 Identities=24% Similarity=0.289 Sum_probs=117.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccc---------c
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYR---------G 91 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~---------~ 91 (843)
+|+++||.++|||||+++|.. +............+|...+|.+||+|+..+...+.+...+.. .++. .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV-VNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCce-ecCCCCccccccce
Confidence 478999999999999999964 333332122245789999999999998766555544422111 0110 1
Q ss_pred ccCCCceEEEEEcCCCCccchHHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccC
Q 003169 92 ERQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~ 169 (843)
..+.+++.++|+|||||.+|..++.+++. .+|++++|||+.+|+..+++.++.++...++|+++++||+|+. +.
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~----~~ 153 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA----PA 153 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc----CH
Confidence 12345779999999999999999999986 7999999999999999999999999999999999999999986 42
Q ss_pred CHHHHHHHHHHHHHHhhhhh
Q 003169 170 DGEEAYQTFQKVIENANVIM 189 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l 189 (843)
+ ++.+.++++...+
T Consensus 154 ~------~~~~~~~~l~~~L 167 (224)
T cd04165 154 N------ILQETLKDLKRIL 167 (224)
T ss_pred H------HHHHHHHHHHHHh
Confidence 1 3455555555444
No 88
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=4.2e-19 Score=153.30 Aligned_cols=79 Identities=38% Similarity=0.602 Sum_probs=75.2
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeeeeEecceeecC
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWDMMS 806 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 806 (843)
||||+|+|+||++++|+|+++|++|||+|.+++..+ ++.+.|+|++|++|++||.++||++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~-~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRG-TGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecC-CCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988754 4689999999999999999999999999999999999999985
No 89
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=5.2e-18 Score=172.64 Aligned_cols=132 Identities=28% Similarity=0.364 Sum_probs=106.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++||+|+|||||+++|+...+ ...+|...+|++||+|+.....++.+.... .........++++.+
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 70 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPK--HLRELINPGEENLQI 70 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccc--cccccccccccCceE
Confidence 899999999999999999976421 245788889999999999888877775110 000001112347899
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++||||||.+|..++..+++.+|++++|+|+.+|...++...+..+...++|+++++||+|+.
T Consensus 71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999999999999999999999999999999999999998877777766788999999999987
No 90
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.75 E-value=1.3e-18 Score=150.19 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=73.1
Q ss_pred eceEEEEEEecCcccccHHHHhhhccceeeeecccCCCCcEEEEEEeehhhh-cCccHHHhhhCCCceeeeeEecceeec
Q 003169 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVES-FGFSSTLRAATSGQAFPQCVFDHWDMM 805 (843)
Q Consensus 727 EPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~~~~~g~~~~~I~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 805 (843)
|||++++|.||++++|+|+++|++|||+|++++..++ +.+.|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~-~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDA-NRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCC-CeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 8999999999999999999999999999999986542 47899999999999 599999999999999999999999975
No 91
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=3.2e-17 Score=165.45 Aligned_cols=127 Identities=43% Similarity=0.630 Sum_probs=109.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++|..|+|||||+++|+................++....+..+|+|+......+.+. +..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 64 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP----------------DRRV 64 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC----------------CEEE
Confidence 689999999999999999998876654432222346777888999999988776666664 6789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+||||||+.+|...+..+++.+|++++|+|+.++...+....+..+...+.|+++++||+|+.
T Consensus 65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 999999999999999999999999999999999998888888888888889999999999987
No 92
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.71 E-value=5.2e-17 Score=144.88 Aligned_cols=94 Identities=37% Similarity=0.681 Sum_probs=80.8
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
++|+|||+.++++.|.+++|+|||||+|++||.|++++++++.++.++...++|++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 57999999999987666999999999999999999987654433222344589999999999999999999999999999
Q ss_pred ccccccccceeeec
Q 003169 456 GLDQYITKNATLTN 469 (843)
Q Consensus 456 gl~~~~~~tgTL~~ 469 (843)
|+++.+++++||++
T Consensus 81 gl~~~~~~~~t~~~ 94 (94)
T cd04090 81 GIDSSIVKTATITS 94 (94)
T ss_pred CcchheeceEEecC
Confidence 99999888888864
No 93
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.68 E-value=4.8e-16 Score=153.10 Aligned_cols=115 Identities=32% Similarity=0.364 Sum_probs=92.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|... ..+..+.|..+++|+......+.+. .+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~---------------~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLP---------------SGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEec---------------CCcEE
Confidence 7999999999999999999321 1233445666788887766555442 15689
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC-ceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~-p~ilviNK~D~~ 163 (843)
++|||||+.+|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+.
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 999999999999989999999999999999999888888877766655566 888999999987
No 94
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.68 E-value=1.9e-16 Score=138.40 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=74.1
Q ss_pred CCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEE
Q 003169 373 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (843)
Q Consensus 373 ~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv 452 (843)
++||+++|||+.++++.|+ ++|+|||||+|++|+.|++.. +. .+|+++||.++|.+..++++|.|||||
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~-la~~RV~sG~l~~g~~v~~~~-----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~ 69 (85)
T cd03690 1 ESELSGTVFKIERDDKGER-LAYLRLYSGTLRLRDSVRVNR-----EE-----KIKITELRVFNNGEVVTADTVTAGDIA 69 (85)
T ss_pred CCCcEEEEEEeEECCCCCe-EEEEEEccCEEcCCCEEEeCC-----Cc-----EEEeceeEEEeCCCeEECcEECCCCEE
Confidence 3799999999999999887 999999999999999998532 22 279999999999999999999999999
Q ss_pred EEeccccccccce-eee
Q 003169 453 AMVGLDQYITKNA-TLT 468 (843)
Q Consensus 453 ~i~gl~~~~~~tg-TL~ 468 (843)
++.|++++ .+| ||+
T Consensus 70 ai~gl~~~--~~Gdtl~ 84 (85)
T cd03690 70 ILTGLKGL--RVGDVLG 84 (85)
T ss_pred EEECCCCC--cCccccC
Confidence 99999987 678 774
No 95
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.64 E-value=9.9e-16 Score=141.79 Aligned_cols=112 Identities=12% Similarity=0.052 Sum_probs=89.6
Q ss_pred EeeEeccccccceeeeeecCCc--eeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEecc
Q 003169 562 VSFRETVLEKSCRTVMSKSPNK--HNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 639 (843)
Q Consensus 562 V~yrETi~~~~~~~~~~~~~~~--~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p 639 (843)
|+|||||+.+++...+.+..+. +.+++++++|++..
T Consensus 1 VaYRETI~~~~~~~~~~~~~~~~~~a~v~l~veP~~~g------------------------------------------ 38 (115)
T cd01684 1 VIYKERPLGTGEGVEHIEVPPNPFWATVGLRVEPLPRG------------------------------------------ 38 (115)
T ss_pred CceEEEeCCcEEEEEEEccCCCcEEEEEEEEEEECCCC------------------------------------------
Confidence 6899999988764333333333 56677777775310
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHHH
Q 003169 640 ETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQ 718 (843)
Q Consensus 640 ~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a~ 718 (843)
.++.|.+.+.|..+++++.++|++||+.|+++||| |+||.||+|+|.|+.+|. ||+..+ |..|+++|+++|+
T Consensus 39 ---~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~~h~~~ss~~a---f~~Aa~~a~~~a~ 111 (115)
T cd01684 39 ---SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGRYHSPVSTAAD---FRELTPRVLRQAL 111 (115)
T ss_pred ---CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEeeecCCCCCHHH---HHHHHHHHHHHHH
Confidence 13677788888889999999999999999999999 999999999999999997 766655 5589999999999
Q ss_pred hhcC
Q 003169 719 LTAK 722 (843)
Q Consensus 719 ~~a~ 722 (843)
.+|+
T Consensus 112 ~~a~ 115 (115)
T cd01684 112 KKAG 115 (115)
T ss_pred HhcC
Confidence 9874
No 96
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.63 E-value=2.6e-14 Score=174.05 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc--ccCCCceEEEEEcCCCCc
Q 003169 32 KSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQGNEYLINLIDSPGHV 109 (843)
Q Consensus 32 KTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~liDTPGh~ 109 (843)
||||+++|-..+- .+....|||.+..+..+.++........... +..-+...++|||||||.
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999922211 3344568999888777766410000000000 001112248999999999
Q ss_pred cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 110 DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 110 df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+|.....++++.+|++++|+|+.+|+..||..++..+...++|+++++||+|+.
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 999888889999999999999999999999999999988999999999999985
No 97
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.61 E-value=2.3e-15 Score=131.20 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=72.6
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|+|+|||++++++.|. ++|+|||||+|++||.|+++.. +. .+++++|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~d~~~g~-i~~~Ri~sGtl~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04092 1 LCALAFKVVHDPQRGP-LTFVRVYSGTLKRGSALYNTNT----GK-----KERISRLLQPFADQYQEIPSLSAGNIGVIT 70 (83)
T ss_pred CEEEEEecccCCCCCe-EEEEEEecCEECCCCEEEECCC----CC-----EEEeeEEEEEECCCceECCeeCCCCEEEEE
Confidence 5799999999999886 9999999999999999997542 22 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003169 456 GLDQYITKNA-TLTN 469 (843)
Q Consensus 456 gl~~~~~~tg-TL~~ 469 (843)
|++++ ++| |||.
T Consensus 71 gl~~~--~~Gdtl~~ 83 (83)
T cd04092 71 GLKQT--RTGDTLVT 83 (83)
T ss_pred CCCCc--ccCCEEeC
Confidence 99886 788 8863
No 98
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=158.17 Aligned_cols=306 Identities=19% Similarity=0.273 Sum_probs=201.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-eEeecCccccccccceeeeeeEEEEEeechhhhhccccc------
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-VRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE------ 92 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~------ 92 (843)
.+|+++|.+|+|||||+..|. .|..+.. .|. ...+-....|.+.|.|-....--+.|+..++.++++...
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLT--HgeLDnG-RG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLT--HGELDNG-RGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred EEEEEEecccCCcceeEeeee--ecccccC-ccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 469999999999999999883 2333221 121 123445667888888877666666666444544444321
Q ss_pred ---cCCCceEEEEEcCCCCccchHHHHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccc
Q 003169 93 ---RQGNEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLEL 167 (843)
Q Consensus 93 ---~~~~~~~i~liDTPGh~df~~e~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~ 167 (843)
.++.-..|+|||..||+.|...+.-++ ..-|..+|+|.|..|+...|++++..|....+|+++|++|+|..
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMC---- 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMC---- 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccC----
Confidence 233445799999999999999888888 47899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccce--eeeccCccceEEeehhHHHHHhhhcCCCHHHHHHhhc
Q 003169 168 QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGT--VAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLW 245 (843)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~--v~~~s~~~g~~~~~~~~a~~~~~~~~i~~~~l~~~~w 245 (843)
.++ .+++.+.-+..++.+ |-... |...|- +.
T Consensus 287 PAN------iLqEtmKll~rllkS------------~gcrK~PvlVrs~-DD---------------------------- 319 (641)
T KOG0463|consen 287 PAN------ILQETMKLLTRLLKS------------PGCRKLPVLVRSM-DD---------------------------- 319 (641)
T ss_pred cHH------HHHHHHHHHHHHhcC------------CCcccCcEEEecc-cc----------------------------
Confidence 665 344444444444432 11111 222111 00
Q ss_pred cccccCCCCCceeecCCCCCcchhhhhHHhhcHHHHHHHHHhcCChHhHHHHHHhcCCcCCHHHHHHhhHHHHHHHHHhh
Q 003169 246 GENFFDPATRKWTSRNTGSPTCKRGFVQFCYEPIKQIINICMNDEKDKLWPMLQKLGVTMKSEEKELMGKALMKRVMQTW 325 (843)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~pi~~l~~~~~~~d~~~l~~~l~~~~~~l~~~el~~~~~~l~~~i~~~~ 325 (843)
+. .....|....+.||+++....- .+
T Consensus 320 -----------Vv-------~~A~NF~Ser~CPIFQvSNVtG---------------~N--------------------- 345 (641)
T KOG0463|consen 320 -----------VV-------HAAVNFPSERVCPIFQVSNVTG---------------TN--------------------- 345 (641)
T ss_pred -----------eE-------EeeccCccccccceEEeccccC---------------CC---------------------
Confidence 00 0112344444445543222100 11
Q ss_pred ccchHHHHHHHHhcCCChhhhhhhhhccccCCCCCcccccccccccCCCCeEEEEEEeeecCCCCceeEEEEEEeeEecC
Q 003169 326 LPASSALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYANAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVAT 405 (843)
Q Consensus 326 ~P~~~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~ 405 (843)
-+||.++.+.+|.-. ..+.+.|.-..+-.+|+.+.+|. ++-+..++|+++-
T Consensus 346 ----L~LLkmFLNlls~R~------------------------~~~E~~PAeFQIDD~Y~VpGVGT-vvSGT~L~GtIrL 396 (641)
T KOG0463|consen 346 ----LPLLKMFLNLLSLRR------------------------QLNENDPAEFQIDDIYWVPGVGT-VVSGTLLSGTIRL 396 (641)
T ss_pred ----hHHHHHHHhhcCccc------------------------ccccCCCcceeecceEecCCcce-EeecceeeeeEEe
Confidence 256666666665431 11245677778888999999998 8889999999999
Q ss_pred CCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEE--EEeccccccccce-eeecCC
Q 003169 406 GLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV--AMVGLDQYITKNA-TLTNEK 471 (843)
Q Consensus 406 g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv--~i~gl~~~~~~tg-TL~~~~ 471 (843)
+|.+. +||... .++-+..|+.|. +++.+|..+.+|+-. |+.+++....+-| .+.+++
T Consensus 397 ND~Ll-LGPd~~----G~F~pI~iKSIH----RKRMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 397 NDILL-LGPDSN----GDFMPIPIKSIH----RKRMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ccEEE-ecCCCC----CCeeeeehhhhh----hccccceEEeccchhhhHhhhcchhhhhcceEEecCC
Confidence 99997 454422 134445666665 477889999999985 4556666656667 666655
No 99
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.59 E-value=8.1e-15 Score=136.46 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=89.0
Q ss_pred eEeccccccceeeeee----cCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEecc
Q 003169 564 FRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGP 639 (843)
Q Consensus 564 yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~p 639 (843)
|||||.++++.....+ ....+.+++++++|++..
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~------------------------------------------ 38 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG------------------------------------------ 38 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC------------------------------------------
Confidence 9999998865332221 233456777888776421
Q ss_pred CCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHh
Q 003169 640 ETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQL 719 (843)
Q Consensus 640 ~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~ 719 (843)
.+|.|++.+.+..++++++++|++||++|+++|||||+||+|++|+|.++.+|.+ +....+++.|+++||++||+
T Consensus 39 ---~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~~~~~~~~~aa~~a~~~al~ 113 (116)
T cd01680 39 ---SGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEG--VSTEAGFRAAAGRAFESAAQ 113 (116)
T ss_pred ---CCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCC--CCCHHHHHHHHHHHHHHHHH
Confidence 2477777777888999999999999999999999999999999999999999863 23446788999999999999
Q ss_pred hcC
Q 003169 720 TAK 722 (843)
Q Consensus 720 ~a~ 722 (843)
+|+
T Consensus 114 ~a~ 116 (116)
T cd01680 114 KAG 116 (116)
T ss_pred hcC
Confidence 874
No 100
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=1.9e-14 Score=142.50 Aligned_cols=114 Identities=30% Similarity=0.381 Sum_probs=87.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|+.|+|||||+++|....-.. ....++|.......+.+. ...+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~~-------------~~~~~~~ 52 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA----------------GEAGGITQHIGAFEVPAE-------------VLKIPGI 52 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc----------------ccCCCeEEeeccEEEecc-------------cCCcceE
Confidence 58999999999999999995432110 112234443332222221 0126789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++|||||+.+|......+++.+|++++|+|++++...++...+..+...++|+++++||+|+.
T Consensus 53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 999999999998888889999999999999999988888888888888899999999999987
No 101
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.58 E-value=6.1e-15 Score=128.67 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=71.0
Q ss_pred EEEEEeee---cCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE
Q 003169 378 LYVSKMIP---ASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 378 a~VfK~~~---~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
|+|||+.. +++.|+ ++|+|||||+|++||.|++.. .+. .+++++|+.++|.+..++++|.||||+++
T Consensus 1 ~~vfKv~~~~~~~~~Gk-la~~Rv~sG~l~~g~~v~~~~----~~~-----~~kv~~l~~~~g~~~~~v~~a~aGdIv~v 70 (85)
T cd03689 1 GFVFKIQANMDPAHRDR-IAFVRVCSGKFERGMKVKHVR----LGK-----EVRLSNPQQFFAQDRETVDEAYPGDIIGL 70 (85)
T ss_pred CEEEEEecccCCCCCcE-EEEEEEECCEEcCCCEEEEcC----CCC-----EEEeeEeEEEecCCeeEcCEECCCCEEEE
Confidence 58999999 999887 999999999999999999643 222 27999999999999999999999999999
Q ss_pred eccccccccce-eeec
Q 003169 455 VGLDQYITKNA-TLTN 469 (843)
Q Consensus 455 ~gl~~~~~~tg-TL~~ 469 (843)
.|++++ .+| |||+
T Consensus 71 ~gl~~~--~~Gdtl~~ 84 (85)
T cd03689 71 VNPGNF--QIGDTLTE 84 (85)
T ss_pred ECCCCc--cccCEeeC
Confidence 999987 688 8875
No 102
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=2.3e-14 Score=164.66 Aligned_cols=115 Identities=25% Similarity=0.300 Sum_probs=92.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|++|+|||||+++|++....+... ..|.|.++....+.+. +
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~ 220 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD---------------IAGTTRDSIDTPFERD----------------G 220 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCceEEEEEEEEEEC----------------C
Confidence 34689999999999999999997665433322 2356666555555553 6
Q ss_pred eEEEEEcCCCCccch-----------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+.. ..+.++++.+|++|+|+|+.+|...++..+++++...++|+++++||+|+.
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 789999999975321 235568899999999999999999999999999999999999999999976
No 103
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.58 E-value=1.1e-14 Score=129.62 Aligned_cols=91 Identities=51% Similarity=0.935 Sum_probs=74.0
Q ss_pred eEEEEEEeeecC-CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE
Q 003169 376 LMLYVSKMIPAS-DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 376 ~~a~VfK~~~~~-~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
++++|||+.+++ +.| +++|+|||||+|++|+.|++.+++++....+...++++++||.++|.+..++++|.|||||++
T Consensus 1 ~v~~v~Ki~~~~~~~g-~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i 79 (93)
T cd03700 1 LVMYVTKMVPTPDKGG-FIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI 79 (93)
T ss_pred CeEEEEeCeECCCCCE-EEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE
Confidence 478999999998 555 499999999999999999987654332111223357999999999999999999999999999
Q ss_pred eccccccccceeeec
Q 003169 455 VGLDQYITKNATLTN 469 (843)
Q Consensus 455 ~gl~~~~~~tgTL~~ 469 (843)
.|+++. ++|+++.
T Consensus 80 ~g~~~~--~~g~~~~ 92 (93)
T cd03700 80 VGLDQL--KSGTTAT 92 (93)
T ss_pred ECCccC--ceEeEec
Confidence 999885 6775543
No 104
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.57 E-value=1.1e-14 Score=127.04 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=72.1
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
++|+|||+.++++.|+ ++|+|||||+|++||.|++++. .. .+++.+|+.++|.+..++++++|||||++.
T Consensus 1 ~~a~Vfk~~~d~~~G~-~~~~Rv~sG~l~~g~~v~~~~~----~~-----~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~ 70 (83)
T cd04088 1 FVALVFKTIHDPFVGK-LSFVRVYSGTLKAGSTLYNSTK----GK-----KERVGRLLRMHGKKQEEVEEAGAGDIGAVA 70 (83)
T ss_pred CEEEEEEcccCCCCce-EEEEEEecCEEcCCCEEEECCC----Cc-----EEEeeEEEEEcCCCceECCEeCCCCEEEEE
Confidence 5799999999999887 9999999999999999997642 22 279999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003169 456 GLDQYITKNA-TLT 468 (843)
Q Consensus 456 gl~~~~~~tg-TL~ 468 (843)
|++++ ++| ||+
T Consensus 71 g~~~~--~~Gdtl~ 82 (83)
T cd04088 71 GLKDT--ATGDTLC 82 (83)
T ss_pred CCCCC--ccCCEee
Confidence 99886 778 775
No 105
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=3.4e-14 Score=155.65 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=99.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|||+|.+|+|||||+|+|+.....+....+| +|.++-...+.|+ +.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aG---------------TTRD~I~~~~e~~----------------~~ 226 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG---------------TTRDSIDIEFERD----------------GR 226 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCC---------------ccccceeeeEEEC----------------Ce
Confidence 4689999999999999999998888877776565 5777777777775 88
Q ss_pred EEEEEcCCCCcc----------c-hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVD----------F-SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d----------f-~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++.||||.|... | ...+..|+..||.+++|+||.+|+..|...+..++.+.+.++++++||+|+.
T Consensus 227 ~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~ 302 (444)
T COG1160 227 KYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV 302 (444)
T ss_pred EEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 999999999642 2 2357889999999999999999999999999999999999999999999987
No 106
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.55 E-value=2e-14 Score=124.66 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=69.9
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|+|+|||+.+++. |+ ++|+|||||+|++||.|+++. .+. .+++.+|+.++|.+..+++++.||||+++.
T Consensus 1 ~~a~vfK~~~~~~-G~-i~~~Rv~sG~lk~gd~v~~~~----~~~-----~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~ 69 (81)
T cd04091 1 FVGLAFKLEEGRF-GQ-LTYMRIYQGKLKKGDTIYNVR----TGK-----KVRVPRLVRMHSNEMEEVEEAGAGDICAIF 69 (81)
T ss_pred CeEEEEEeecCCC-CC-EEEEEEecCEEcCCCEEEEcC----CCC-----EEEEeEEEEEeCCCceEccEECCCCEEEEE
Confidence 5799999999877 87 999999999999999999753 222 279999999999999999999999999999
Q ss_pred ccccccccce-eeec
Q 003169 456 GLDQYITKNA-TLTN 469 (843)
Q Consensus 456 gl~~~~~~tg-TL~~ 469 (843)
|++ . ++| ||++
T Consensus 70 g~~-~--~~Gdtl~~ 81 (81)
T cd04091 70 GID-C--ASGDTFTD 81 (81)
T ss_pred CCC-c--ccCCEecC
Confidence 996 5 688 8863
No 107
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.54 E-value=6e-14 Score=160.97 Aligned_cols=114 Identities=26% Similarity=0.288 Sum_probs=90.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|+.....+... ..|.|.+.....+.+. +.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~---------------~~gtt~~~~~~~~~~~----------------~~ 220 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSD---------------IAGTTRDSIDIPFERN----------------GK 220 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCC---------------CCCceECcEeEEEEEC----------------Cc
Confidence 4589999999999999999997654433222 2345665554555553 56
Q ss_pred EEEEEcCCCCccch-----------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.||||||+.++. ..+..+++.+|++|+|+|+.+|.+.++..+++++...++|+++++||+|+.
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 89999999986543 224567899999999999999999999999999988999999999999986
No 108
>COG1159 Era GTPase [General function prediction only]
Probab=99.54 E-value=9.8e-14 Score=144.39 Aligned_cols=114 Identities=30% Similarity=0.354 Sum_probs=89.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.--|||+|.+|+|||||+|+|++..-+|.+..+.+++ -+-+|| ... .+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR-------~~I~GI---------~t~---------------~~~ 54 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR-------NRIRGI---------VTT---------------DNA 54 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh-------hheeEE---------EEc---------------CCc
Confidence 4569999999999999999998776666554343221 011122 111 378
Q ss_pred EEEEEcCCCCcc--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++.|+||||... ...++..++..+|.+++|||+.++.....+.++.++...+.|+++++||+|+.
T Consensus 55 QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~ 127 (298)
T COG1159 55 QIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKV 127 (298)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccC
Confidence 999999999642 34568888999999999999999999999999999888778999999999987
No 109
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=5.4e-14 Score=154.08 Aligned_cols=113 Identities=25% Similarity=0.251 Sum_probs=96.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..|+|+|.+|+|||||.|+|+...-++....+ |+|.+..+....|. ++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p---------------GvTRDr~y~~~~~~----------------~~~ 52 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP---------------GVTRDRIYGDAEWL----------------GRE 52 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC---------------CCccCCccceeEEc----------------Cce
Confidence 57999999999999999999666655555444 46777777777886 788
Q ss_pred EEEEcCCCCccch---------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFS---------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~---------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.+|||+|..+.. .++..|+..||++|||||+.+|++++++.+.+.+...++|+|+|+||+|..
T Consensus 53 f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 53 FILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 9999999987432 358889999999999999999999999999999998889999999999965
No 110
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.51 E-value=8e-14 Score=122.39 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=72.6
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|.|+|||+..+++.|+ ++|+|||||+|++||.|++..++ . +...+++++|+.++|.+..++++++|||||++.
T Consensus 1 ~~~~vfk~~~d~~~g~-i~~~Rv~sG~l~~g~~v~~~~~~----~--~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~ 73 (86)
T cd03691 1 LQMLVTTLDYDDYVGR-IAIGRIFRGTVKVGQQVAVVKRD----G--KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA 73 (86)
T ss_pred CeEEEEEeEecCCCCe-EEEEEEEeCEEcCCCEEEEEcCC----C--CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE
Confidence 4689999999999887 99999999999999999976532 1 112368999999999999999999999999999
Q ss_pred ccccccccce-eee
Q 003169 456 GLDQYITKNA-TLT 468 (843)
Q Consensus 456 gl~~~~~~tg-TL~ 468 (843)
|++++ .+| ||+
T Consensus 74 gl~~~--~~Gdtl~ 85 (86)
T cd03691 74 GIEDI--TIGDTIC 85 (86)
T ss_pred CCCCC--cccceec
Confidence 99886 677 775
No 111
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.50 E-value=6e-14 Score=130.48 Aligned_cols=76 Identities=22% Similarity=0.133 Sum_probs=68.2
Q ss_pred CceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccc-cccccCCCchHHHHHHHHHHHHhhcC
Q 003169 644 PNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHA-DAIHRGGGQVIPTARRVIYASQLTAK 722 (843)
Q Consensus 644 ~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~-ds~~~~~~~i~~a~~~a~~~a~~~a~ 722 (843)
+|.|.+++.+..++++++++|.+||++|+++||++|+||+||+|+|.++.+|. |+. ...++.|+++|+++|+.+|+
T Consensus 40 g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 40 GFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSS---EMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred CCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCC---HHHHHHHHHHHHHHHHHhcC
Confidence 47788888888999999999999999999999999999999999999999997 554 34577999999999999874
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.50 E-value=1.6e-13 Score=135.95 Aligned_cols=115 Identities=15% Similarity=0.121 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++|+.|+|||||+++|....... .|. ...+ ...|+......+.++ +..+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----~~~------~~~~--~~~t~~~~~~~~~~~----------------~~~~ 52 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----KGL------PPSK--ITPTVGLNIGTIEVG----------------NARL 52 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----cCC------cccc--cCCccccceEEEEEC----------------CEEE
Confidence 68999999999999999996543210 110 0001 112333333344443 6899
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+++||||+.+|.......++.+|++++|+|+.+.-... ....+..+. ..++|+++++||+|+.
T Consensus 53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 99999999999999999999999999999998743221 122222222 3478999999999987
No 113
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=1.6e-13 Score=133.99 Aligned_cols=110 Identities=25% Similarity=0.258 Sum_probs=82.9
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEE
Q 003169 23 SVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINL 102 (843)
Q Consensus 23 ~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 102 (843)
+++|+.|+|||||+++|+........ ...++|.........+. ++.+++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~~~~i 49 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWG----------------GREFIL 49 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEEC----------------CeEEEE
Confidence 58999999999999999543211111 11233433333333333 678999
Q ss_pred EcCCCCccchH--------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 103 IDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 103 iDTPGh~df~~--------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
|||||+.++.. ++...++.+|++++|+|+.++....+..+++++...+.|+++++||+|+.
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 118 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNI 118 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccC
Confidence 99999998644 56677899999999999999888888888888888889999999999988
No 114
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=5.9e-13 Score=131.91 Aligned_cols=114 Identities=26% Similarity=0.330 Sum_probs=84.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|++|+|||||+++|+.....+.. ..++.|.......+.+. +.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~----------------~~ 50 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS---------------DIAGTTRDSIDVPFEYD----------------GK 50 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc---------------CCCCCccCceeeEEEEC----------------Ce
Confidence 357999999999999999999654322211 11233443333333332 56
Q ss_pred EEEEEcCCCCccch-----------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~-----------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+++|||||+.++. .....+++.+|++++|+|+..+...+...+++.+...+.|+++++||+|+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 126 (174)
T cd01895 51 KYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLV 126 (174)
T ss_pred eEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccC
Confidence 78999999986542 224456789999999999999988888888888887889999999999987
No 115
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.9e-13 Score=139.89 Aligned_cols=134 Identities=27% Similarity=0.364 Sum_probs=103.3
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEE-Eeec------hhhhhcc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLY-YEMT------DAALKSY 89 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~------~~~~~~~ 89 (843)
+...||+.+||+.|||||++.++ .| ..+-.+..|-+|.|||+..++... |+.. ..+++++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAi-----------SG--v~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAI-----------SG--VHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred eeeeeecceeccccCcceeeeee-----------cc--ceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhcc
Confidence 44569999999999999999988 55 223346779999999998877665 3322 2334443
Q ss_pred ccc--------cCC--C----ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-cchhHHHHHHHHHcCCCc-e
Q 003169 90 RGE--------RQG--N----EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLRQALGERIR-P 153 (843)
Q Consensus 90 ~~~--------~~~--~----~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l~~~~~~~~p-~ 153 (843)
.+. .-+ + -.++.|+|||||.=++..+.++..++|+|+|+|.+++. .++||.+++....-++++ +
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466|consen 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceE
Confidence 221 111 1 13688999999999999999999999999999999985 689999999888878877 5
Q ss_pred EEEEEcCCcc
Q 003169 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNK~D~~ 163 (843)
+++-||+|+.
T Consensus 183 iilQNKiDli 192 (466)
T KOG0466|consen 183 IILQNKIDLI 192 (466)
T ss_pred EEEechhhhh
Confidence 5788999988
No 116
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=8e-13 Score=127.61 Aligned_cols=130 Identities=22% Similarity=0.261 Sum_probs=99.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-+|+|+|+.++||||+++++......+.....- .+.... .|..|+.....++.+. .++
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k~--kr~tTva~D~g~~~~~---------------~~~ 68 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGKG--KRPTTVAMDFGSIELD---------------EDT 68 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc----cccccc--ccceeEeecccceEEc---------------Ccc
Confidence 3489999999999999999997776544321000 000000 4446666665555554 258
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC-CceEEEEEcCCcccccccCC-HHH
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKMDRCFLELQVD-GEE 173 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p~ilviNK~D~~~~~~~~~-~~~ 173 (843)
.++|.|||||.+|...+.-.++.++|+|++||++.+.....+.+++...... +|.++++||.|+. .+. |++
T Consensus 69 ~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~----~a~ppe~ 141 (187)
T COG2229 69 GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLF----DALPPEK 141 (187)
T ss_pred eEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccC----CCCCHHH
Confidence 9999999999999999999999999999999999988877778888776666 8999999999999 764 443
No 117
>PRK15494 era GTPase Era; Provisional
Probab=99.45 E-value=8.4e-13 Score=145.83 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=82.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|++|+|||||+++|+...-.+.....+ .|.......+.++ +
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~---------------tTr~~~~~~~~~~----------------~ 99 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ---------------TTRSIITGIITLK----------------D 99 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC---------------CccCcEEEEEEeC----------------C
Confidence 34589999999999999999996543222111112 2222222223333 6
Q ss_pred eEEEEEcCCCCccc--------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+++||||||..+. ...+..+++.+|++++|+|+.++....+..++..+...+.|+++|+||+|+.
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 78999999998542 2234456889999999999999887777777777777788999999999986
No 118
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=8.6e-13 Score=152.57 Aligned_cols=115 Identities=21% Similarity=0.312 Sum_probs=87.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|++|+|||||+++|+.....+... ..|+|.+.....+.+. +
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~----------------~ 258 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELG----------------G 258 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEEC----------------C
Confidence 35799999999999999999996554322221 2344554444444443 6
Q ss_pred eEEEEEcCCCCc---------cchHH--HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~---------df~~e--~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.||||||.. +|... ...+++.+|++|+|+|++++...+...++..+...++|+|+|+||+|+.
T Consensus 259 ~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 259 KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 678999999963 23222 2346789999999999999999999988888888899999999999987
No 119
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.45 E-value=3.2e-13 Score=118.45 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=67.5
Q ss_pred eEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 376 LMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 376 ~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
|.|+|||+..+++.|+ ++|+|||||+|++||.|++.. .+. .+++++|+. ++.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~-i~~~Rv~sG~l~~~~~v~~~~----~~~-----~~~i~~l~~-~~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGV-IALVRVFDGTLKKGDKIRFMS----TGK-----EYEVEEVGI-FRPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCE-EEEEEEEcCEEcCCCEEEEec----CCC-----eEEEEEEEE-ECCCccCCceECCCCEEEEE
Confidence 5799999999999887 999999999999999999653 222 279999995 58888999999999999996
Q ss_pred -c---cccccccce-eeec
Q 003169 456 -G---LDQYITKNA-TLTN 469 (843)
Q Consensus 456 -g---l~~~~~~tg-TL~~ 469 (843)
| ++++ .+| ||++
T Consensus 70 ~g~~~l~~~--~~Gdtl~~ 86 (86)
T cd03699 70 AGIKTVKDA--RVGDTITL 86 (86)
T ss_pred ccccccCcc--ccccEeeC
Confidence 4 5555 678 8863
No 120
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.45 E-value=1.1e-12 Score=131.89 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=80.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|+..... .. +. ...|.|..... +.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~-~~-------~~------~~~~~t~~~~~--~~~----------------- 62 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKL-AR-------TS------KTPGRTQLINF--FEV----------------- 62 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------cc------CCCCcceEEEE--EEe-----------------
Confidence 56679999999999999999999654211 00 00 01122332211 111
Q ss_pred ceEEEEEcCCCCc----------cchHHHHHHhh---ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~----------df~~e~~~~l~---~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.+|||||+. +|...+...++ .+|++++|+|+..+...++..+++.+...++|+++++||+|+.
T Consensus 63 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 63 NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 1268999999963 23333334444 4689999999999999999888888888899999999999986
No 121
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.43 E-value=5.2e-12 Score=152.16 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=81.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+|+|..... + .|+ ..|.|++.....+.+. ++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~---~--vgn-----------~pGvTve~k~g~~~~~----------------~~~ 51 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ---R--VGN-----------WAGVTVERKEGQFSTT----------------DHQ 51 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC---c--cCC-----------CCCceEeeEEEEEEcC----------------ceE
Confidence 5899999999999999999943221 1 221 1466776666666654 789
Q ss_pred EEEEcCCCCccchHH--------H--HHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSE--------V--TAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e--------~--~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++++||||+.+|... . ...+ ..+|++++|+|+++... ...++.++.+.++|+++++||+|+.
T Consensus 52 i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIA 125 (772)
T ss_pred EEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhh
Confidence 999999999988531 1 1122 37899999999998543 3456678888899999999999986
No 122
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=6.2e-13 Score=152.58 Aligned_cols=112 Identities=23% Similarity=0.255 Sum_probs=90.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|++|+|||||+++|+.....+... ..|+|.+.......|. +..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~t~d~~~~~~~~~----------------~~~~ 49 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD---------------TPGVTRDRKYGDAEWG----------------GREF 49 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC---------------CCCcccCceEEEEEEC----------------CeEE
Confidence 48999999999999999996544322221 2355655555566665 6789
Q ss_pred EEEcCCCCc--------cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHV--------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~--------df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+||||||+. .+...+..+++.+|++++|+|+.+|.......+++.+.+.++|+++|+||+|..
T Consensus 50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 999999984 345567888999999999999999999999989888888899999999999987
No 123
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=1e-12 Score=130.02 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=80.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|+.|+|||||+++|+.. .... +....++.+.....+.+. +..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~--~~~~--------------~~~~t~~~~~~~~~~~~~--------------~~~ 51 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSG--TFSE--------------RQGNTIGVDFTMKTLEIE--------------GKR 51 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhC--CCcc--------------cCCCccceEEEEEEEEEC--------------CEE
Confidence 3579999999999999999998432 1111 000111112222233332 124
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH---cCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~---~~~~p~ilviNK~D~~ 163 (843)
..++|+||||+.+|.......++.+|++++|+|+++....+....|.. .. ..++|+++|+||+|+.
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~ 121 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE 121 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 688999999999999989999999999999999998766555444432 21 3467899999999987
No 124
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.42 E-value=6.8e-13 Score=128.59 Aligned_cols=109 Identities=27% Similarity=0.321 Sum_probs=79.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||.|+|......+ .. -.|.|++.....+.+. +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v----------~n------~pG~Tv~~~~g~~~~~----------------~~~~ 49 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV----------GN------WPGTTVEKKEGIFKLG----------------DQQV 49 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE----------EE------STTSSSEEEEEEEEET----------------TEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee----------cC------CCCCCeeeeeEEEEec----------------CceE
Confidence 69999999999999999995543111 11 1367888777777765 7899
Q ss_pred EEEcCCCCccch----HH--HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFS----SE--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~----~e--~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.|+||||..++. .| +..++ ...|++++|+||+. ..+...+..++.+.++|+++++||+|..
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 999999965542 11 23333 58999999999986 4555677788889999999999999986
No 125
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.4e-13 Score=150.82 Aligned_cols=128 Identities=25% Similarity=0.344 Sum_probs=91.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcccc--ccCCCce
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRG--ERQGNEY 98 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 98 (843)
-+||+||+|+|||-|++.+-..+ +. ...+| |||-......|....-....+.+.. ...-+--
T Consensus 477 IcCilGHVDTGKTKlld~ir~tN-Vq-egeag--------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP 540 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTN-VQ-EGEAG--------------GITQQIGATYFPAENIREKTKELKKDAKKRLKVP 540 (1064)
T ss_pred eEEEeecccccchHHHHHhhccc-cc-ccccc--------------ceeeeccccccchHHHHHHHHHHHhhhhhhcCCC
Confidence 68999999999999999983321 11 11122 4554433332222100000000000 0011223
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~ 164 (843)
.+.+||||||..|+....++...||.||+|||...|+.+||.+-+..++..+.|+||++||+||++
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhc
Confidence 578999999999999999999999999999999999999999999999999999999999999983
No 126
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.1e-12 Score=151.68 Aligned_cols=116 Identities=22% Similarity=0.310 Sum_probs=90.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..+.+|+|+|++|+|||||+++|+.....+.. ...|+|.+.......|.
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~---------------~~~gvT~d~~~~~~~~~---------------- 84 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE---------------DVPGVTRDRVSYDAEWN---------------- 84 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc---------------CCCCCCEeeEEEEEEEC----------------
Confidence 45689999999999999999999654322211 12345555444444554
Q ss_pred ceEEEEEcCCCCcc--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..++||||||+.. |...+..+++.||++|+|+|++++.......++..+...++|+++|+||+|+.
T Consensus 85 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 67899999999863 44556778999999999999999988877888888888899999999999987
No 127
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.41 E-value=2.3e-12 Score=138.35 Aligned_cols=111 Identities=27% Similarity=0.218 Sum_probs=78.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|++|+|||||+++|+...-.+....+++ |..... ..... .+.++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~T---------------Tr~~i~-~i~~~---------------~~~qi 50 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQT---------------TRNRIS-GIHTT---------------GASQI 50 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCc---------------ccCcEE-EEEEc---------------CCcEE
Confidence 589999999999999999966543222222221 211111 11111 25679
Q ss_pred EEEcCCCCccc--------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.|+||||+.+. ...+..+++.+|++++|+|++++.... ..++..+...+.|.++|+||+|+.
T Consensus 51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 99999998643 234567889999999999999876554 566667777889999999999986
No 128
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.41 E-value=6.4e-13 Score=124.37 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=82.8
Q ss_pred EeeEeccccccceeeeee----cCCceeEEEEEEEeCchhhhhHHhcCCCCCCCChhhHHHhhhhhcCCcccccceEEEe
Q 003169 562 VSFRETVLEKSCRTVMSK----SPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCF 637 (843)
Q Consensus 562 V~yrETi~~~~~~~~~~~----~~~~~~~~~~~~ePl~~~~~~~i~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 637 (843)
|+|||||.++++.....+ ....+.+++++++|++.+ +..+ +
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~-----~~~~-----------------~------------- 45 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQAS-----SSPV-----------------E------------- 45 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCC-----CCCC-----------------c-------------
Confidence 689999999865322211 244567888999997532 0000 0
Q ss_pred ccCCCCCceEEecccCccchHHHHHHHHHHHHHHHHcCCccCCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHH
Q 003169 638 GPETIGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYAS 717 (843)
Q Consensus 638 ~p~~~g~n~~~~~~~g~~~~~~~~~~i~~G~~~a~~~Gpl~~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a 717 (843)
...|.+.. +..++++++++|++|++.|+++|||+|+||+||+|+|.++.+|...+. ..++.|++.|+++|
T Consensus 46 ------~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~G~pv~~v~V~l~~~~~~~~~s~---~~~~~Aa~~a~~~a 115 (120)
T cd01693 46 ------LIELANSA-IEVLLKRIQEAVENGVHSALLQGPLLGFPVQDVAITLHSLTIGPGTSP---TMISACASQCVQKA 115 (120)
T ss_pred ------eeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCccCCceeeEEEEEEeCCcCCCCCH---HHHHHHHHHHHHHH
Confidence 01222222 456789999999999999999999999999999999999999963221 22347899999999
Q ss_pred HhhcC
Q 003169 718 QLTAK 722 (843)
Q Consensus 718 ~~~a~ 722 (843)
+.+|+
T Consensus 116 l~~a~ 120 (120)
T cd01693 116 LKSAG 120 (120)
T ss_pred HHhcc
Confidence 99874
No 129
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=2.4e-12 Score=155.72 Aligned_cols=115 Identities=23% Similarity=0.285 Sum_probs=88.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+++|++|+|||||+++|+.....+..... |.|.+.....+.+. +
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~---------------gtT~d~~~~~~~~~----------------~ 497 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA---------------GTTRDPVDEIVEID----------------G 497 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCC---------------CCCcCcceeEEEEC----------------C
Confidence 3579999999999999999999765432222222 34554444444554 6
Q ss_pred eEEEEEcCCCCc---------cchHH--HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHV---------DFSSE--VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~---------df~~e--~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.||||||+. +|... ...+++.+|++++|+|++++.+.++..++..+...++|+++|+||+|+.
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 678899999964 23222 3456789999999999999999999999998888899999999999987
No 130
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=1.9e-12 Score=148.90 Aligned_cols=113 Identities=23% Similarity=0.231 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+... ..|+|.+.......|. +..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~----------------~~~ 50 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWL----------------GRE 50 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEEC----------------CcE
Confidence 479999999999999999995443222211 1244555444455554 678
Q ss_pred EEEEcCCCCcc--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+++|||||+.+ +...+..+++.+|++|+|+|+.++.......+...+...++|+++++||+|..
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 99999999988 33446678899999999999999988888888888888899999999999965
No 131
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.38 E-value=2.8e-12 Score=124.97 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=79.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+......... ..+.|.......+.+. +..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----------------~~~~ 51 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIG----------------GIPV 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeC----------------CEEE
Confidence 69999999999999999996543221111 1234444333334343 6789
Q ss_pred EEEcCCCCccchHH--------HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+++||||+.++... +...+..+|++++|+|+...........+.+ ..+.|+++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 99999999877532 4457789999999999998666666555554 5678999999999987
No 132
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.38 E-value=1.9e-12 Score=126.61 Aligned_cols=106 Identities=22% Similarity=0.224 Sum_probs=76.6
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEE
Q 003169 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||++++...... .....|+|+......+.+. +..+++|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~----------------~~~~~li 48 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK----------------VGNWPGVTVEKKEGRFKLG----------------GKEIEIV 48 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc----------------ccCCCCcccccceEEEeeC----------------CeEEEEE
Confidence 5899999999999999432110 0112466776666666664 5689999
Q ss_pred cCCCCccchHH------HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 104 DSPGHVDFSSE------VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~~e------~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
||||+.+|... ....+ ..+|++++|+|+... .+....+.++...++|+++++||+|+.
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhc
Confidence 99999887642 33344 389999999999873 233344556667889999999999987
No 133
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=3.7e-12 Score=126.35 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=82.6
Q ss_pred hcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCcccccccccee--eeeeEEEEEeechhhhhccc
Q 003169 13 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITI--KSTGISLYYEMTDAALKSYR 90 (843)
Q Consensus 13 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi--~~~~~~~~~~~~~~~~~~~~ 90 (843)
|......++|+++|+.|+|||||+++|+.. .... ..+.|+ +.....+.+.
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~--~~~~----------------~~~~t~~~~~~~~~~~~~---------- 52 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQG--LFPP----------------GQGATIGVDFMIKTVEIK---------- 52 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhC--CCCC----------------CCCCceeeEEEEEEEEEC----------
Confidence 333455789999999999999999999532 1111 011222 2222223332
Q ss_pred cccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HHHHcCCCceEEEEEcCCcc
Q 003169 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~~~~p~ilviNK~D~~ 163 (843)
+....+.++||||+.+|.......++.+|++++|+|+.++...+....| +.....++|.++++||+|+.
T Consensus 53 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 53 ----GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred ----CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 2245788999999999999999999999999999999887554443334 33334468889999999976
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.36 E-value=6.6e-12 Score=124.56 Aligned_cols=111 Identities=18% Similarity=0.154 Sum_probs=72.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce-E
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY-L 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 99 (843)
||+++|+.|+|||||+++|......+.. .. +.|.......+.+. +. .
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-~~---------------~~t~~~~~~~~~~~----------------~~~~ 49 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-YP---------------FTTLVPNLGVVRVD----------------DGRS 49 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-CC---------------ccccCCcceEEEcC----------------CCCe
Confidence 7999999999999999999543211100 01 12333332333333 34 8
Q ss_pred EEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCc-cchhHHHHH-HHHHc-----CCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG-VCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l-~~~~~-----~~~p~ilviNK~D~~ 163 (843)
++|+||||+.+ +.....+.++.+|++++|+|++++ -..+....| ..+.. .++|+++++||+|+.
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 127 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC
Confidence 99999999742 344556667789999999999986 333333333 22222 368899999999986
No 135
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.36 E-value=8.9e-12 Score=127.89 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=82.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|+.|+|||||+.+|..... .++. .++......+... ...++..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~------~~t~-------------~s~~~~~~~~~~~------------~~~~~~~ 49 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY------RSTV-------------TSIEPNVATFILN------------SEGKGKK 49 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------CCcc-------------CcEeecceEEEee------------cCCCCce
Confidence 4799999999999999999954311 1100 0111111111111 0123678
Q ss_pred EEEEcCCCCccchHHHHHHhhcc-CeEEEEEeCCCccc--hhHHHHH----HHHH--cCCCceEEEEEcCCcccccccCC
Q 003169 100 INLIDSPGHVDFSSEVTAALRIT-DGALVVVDCIEGVC--VQTETVL----RQAL--GERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~-D~ailVvda~~gv~--~~t~~~l----~~~~--~~~~p~ilviNK~D~~~~~~~~~ 170 (843)
+.|||||||.+|.......++.+ +++|+|+|+.+... ..+...| .... ..++|+++++||+|+. .+.
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~----~a~ 125 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF----TAK 125 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc----ccC
Confidence 99999999999999999999998 99999999998631 1122222 1111 2478999999999988 554
Q ss_pred -HHHHHHHHHHHHH
Q 003169 171 -GEEAYQTFQKVIE 183 (843)
Q Consensus 171 -~~~~~~~~~~~~~ 183 (843)
.+.+.+.+..-++
T Consensus 126 ~~~~i~~~le~ei~ 139 (203)
T cd04105 126 PAKKIKEQLEKELN 139 (203)
T ss_pred CHHHHHHHHHHHHH
Confidence 3334444444333
No 136
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=4e-12 Score=125.16 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=71.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++|. |.... + .......|. ..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~-----------~~~~~------------~--~~~~~v~~~----------------~~- 39 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ-----------GNYTL------------A--RKTQAVEFN----------------DK- 39 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc-----------CCCcc------------C--ccceEEEEC----------------CC-
Confidence 579999999999999999983 31100 0 011223343 11
Q ss_pred EEEEcCCCC----ccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGH----VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh----~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++|||||. .++..++..+++.+|++++|+|++++....+..++.. ..+.|+++++||+|+.
T Consensus 40 -~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 40 -GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMP 104 (158)
T ss_pred -CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccC
Confidence 37999996 4677778888999999999999998876655444432 3467889999999987
No 137
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=9.1e-12 Score=124.38 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=77.7
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.....+|+++|+.|+|||||+++|.... . . ..+...|+.+ ..+.++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~--~----------~---~~~~t~g~~~----~~~~~~--------------- 56 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGED--I----------D---TISPTLGFQI----KTLEYE--------------- 56 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCC--C----------C---CcCCccccce----EEEEEC---------------
Confidence 3445689999999999999999994321 0 0 0011112221 122332
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-----HHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-----ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-----~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..++++||||+..|.......++.+|++++|+|+.+.-.... ..++......+.|+++++||+|+.
T Consensus 57 -~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 -GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred -CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 6789999999999998888889999999999999988632222 112111123578999999999987
No 138
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.34 E-value=5.6e-12 Score=124.39 Aligned_cols=113 Identities=14% Similarity=0.258 Sum_probs=78.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++++...- ... .....+.++..... .. +++...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--~~~------------~~~~~~~~~~~~~~--~~--------------~~~~~~~ 51 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--EPQ------------QLSTYALTLYKHNA--KF--------------EGKTILV 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCC------------cCCceeeEEEEEEE--EE--------------CCEEEEE
Confidence 689999999999999999964321 000 00001111111111 11 2236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc--CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|++++...+....| ..... .++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 9999999999999999999999999999999987665554434 33322 368999999999975
No 139
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.34 E-value=1e-11 Score=122.12 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
||+++|..++|||||+++|........ .+ ...-|.++ ..+.+ .+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~-------~~------~~t~g~~~----~~~~~----------------~~~~~ 47 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ-------II------VPTVGFNV----ESFEK----------------GNLSF 47 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc-------ee------cCccccce----EEEEE----------------CCEEE
Confidence 589999999999999999944211000 00 01112222 12223 27889
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHH------HcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA------LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~------~~~~~p~ilviNK~D~~ 163 (843)
+++||||+.+|...+...++.+|++|+|+|++++..... ...+..+ ...++|+++++||+|+.
T Consensus 48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 999999999999999999999999999999998654322 1112221 12478999999999987
No 140
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.34 E-value=1.1e-11 Score=125.34 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=81.5
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhc
Q 003169 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (843)
Q Consensus 9 ~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
+..++....+-.+|+++|..|+|||||+++|.... ... . ....+.+ ...+.+.
T Consensus 7 ~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~--~~~----------~---~~t~~~~----~~~~~~~-------- 59 (184)
T smart00178 7 ILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDR--LAQ----------H---QPTQHPT----SEELAIG-------- 59 (184)
T ss_pred HHHHhccccccCEEEEECCCCCCHHHHHHHHhcCC--Ccc----------c---CCccccc----eEEEEEC--------
Confidence 34455444555789999999999999999994321 000 0 0011112 1223333
Q ss_pred cccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+..++++||||+..+......+++.+|++++|+|+++...... ...+.... ..++|+++++||+|+.
T Consensus 60 --------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 60 --------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 6789999999999998888899999999999999987532222 22222222 2578999999999987
No 141
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=5.9e-12 Score=152.38 Aligned_cols=115 Identities=22% Similarity=0.336 Sum_probs=90.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..++|+|+|++|+|||||+++|+.....+... ..|+|.+.......|. +
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~---------------~pGvT~d~~~~~~~~~----------------~ 322 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED---------------TPGVTRDRVSYDAEWA----------------G 322 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCeeEEEEEEEEEEC----------------C
Confidence 35799999999999999999996543222221 2245555444444554 6
Q ss_pred eEEEEEcCCCCcc--------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVD--------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~d--------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+++|||||+.. |...+..+++.+|++|+|+|+.+|.......+++.+...++|+++|+||+|+.
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 7899999999763 55667788999999999999999998888888888888899999999999976
No 142
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.34 E-value=7e-12 Score=122.94 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=76.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++++.... .. . ..|+......+.+. ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~---------------~--~~t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT---------------T--IPTIGFNVETVEYK----------------NVSF 45 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC---------------C--CCCcCcceEEEEEC----------------CEEE
Confidence 589999999999999999954431 00 0 01111122233333 6789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHH----HHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~----~~~~~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++++|+|++.+-... ....+. .+...+.|+++++||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 99999999999888888899999999999999763221 222332 2223578999999999987
No 143
>PRK00089 era GTPase Era; Reviewed
Probab=99.34 E-value=1.7e-11 Score=133.36 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=81.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+-..|+++|++|+|||||+++|+...-.+.....++ |... ...+... .+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~t---------------t~~~-i~~i~~~---------------~~ 52 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT---------------TRHR-IRGIVTE---------------DD 52 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCc---------------cccc-EEEEEEc---------------CC
Confidence 356799999999999999999965432222111111 1110 0011111 24
Q ss_pred eEEEEEcCCCCccc--------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.++||||+.+. ...+..++..+|++++|+|+.++.......++..+...++|+++++||+|+.
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 78999999998653 3456667889999999999999777777777777777788999999999986
No 144
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.34 E-value=9.9e-12 Score=122.05 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|.... .. ++. . |+......+.+. +..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~~----------~~~---~----t~~~~~~~~~~~----------------~~~~ 45 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--VV----------TTI---P----TIGFNVETVTYK----------------NLKF 45 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--Cc----------CcC---C----ccCcCeEEEEEC----------------CEEE
Confidence 48999999999999999993321 10 110 1 111111223332 6789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHH-HHH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~-~~~---~~~~p~ilviNK~D~~ 163 (843)
+++||||+.+|.......++.+|++|+|+|+++...... ...|. ... ..++|+++++||+|+.
T Consensus 46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 999999999999888889999999999999987533221 22222 222 2468999999999987
No 145
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.33 E-value=8.4e-12 Score=124.24 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=79.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++++... .. .+....+..+.....+.+. +..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~~--------------~~~~~t~~~~~~~~~~~~~--------------~~~~ 51 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--FP--------------ERTEATIGVDFRERTVEID--------------GERI 51 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CC--------------CccccceeEEEEEEEEEEC--------------CeEE
Confidence 5689999999999999999995321 10 0111111111111222222 2357
Q ss_pred EEEEEcCCCCccchH-HHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc----CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~----~~~p~ilviNK~D~~ 163 (843)
.+++|||||+.+|.. .....++.+|++++|+|+.+....+....|.. +.. .++|+++|+||+|+.
T Consensus 52 ~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 122 (170)
T cd04115 52 KVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122 (170)
T ss_pred EEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 899999999999874 45667789999999999998877777656643 322 358999999999986
No 146
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.33 E-value=1.3e-11 Score=114.71 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|.+|+|||||+++|+......... ..+.|.......+.+. +..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~---------------~~~~T~~~~~~~~~~~----------------~~~~ 49 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN---------------IPGTTRDPVYGQFEYN----------------NKKF 49 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS---------------STTSSSSEEEEEEEET----------------TEEE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc---------------cccceeeeeeeeeeec----------------eeeE
Confidence 48999999999999999997532111111 1233444322233333 6678
Q ss_pred EEEcCCCCcc---------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEc
Q 003169 101 NLIDSPGHVD---------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 159 (843)
Q Consensus 101 ~liDTPGh~d---------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK 159 (843)
.|+||||..+ ....+...++.+|++++|+|+.+........+++++. .+.|+++|+||
T Consensus 50 ~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 50 ILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 8999999764 2334666778999999999988855556677777775 88999999998
No 147
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.33 E-value=1.1e-11 Score=122.03 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeee-eeEEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS-TGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+++++..... ....+ |+.. ....+.+. +...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~----------------t~~~~~~~~~~~~--------------~~~~ 50 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDP----------------TIEDSYTKQCEID--------------GQWA 50 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCC----------------CccceEEEEEEEC--------------CEEE
Confidence 48999999999999999999754321 10011 0000 00111121 2356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-----HHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-----~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|+++....+... +++.....++|+++++||+|+.
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 8999999999999999999999999999999999754433322 2222223478999999999986
No 148
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=4.6e-12 Score=122.76 Aligned_cols=113 Identities=26% Similarity=0.363 Sum_probs=73.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+... .. .+..++++.......+.+. +..+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~---------------~~~~~~~~~~~~~~~~~~~--------------~~~~~ 51 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FI---------------TEYKPGTTRNYVTTVIEED--------------GKTYK 51 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-Cc---------------CcCCCCceeeeeEEEEEEC--------------CEEEE
Confidence 589999999999999999995443 11 1222344444333333332 11378
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCC-------CccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCI-------EGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~-------~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|........+.+++++.++|.. ++.......+++.+.. +.|+++++||+|+.
T Consensus 52 ~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~ 121 (161)
T TIGR00231 52 FNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLR 121 (161)
T ss_pred EEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCC
Confidence 999999999999665555555555555555554 4443444555555433 88999999999987
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.33 E-value=2e-11 Score=122.09 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=81.7
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhh
Q 003169 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 8 ~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
.+.+++.. ...++|+++|+.++|||||+++|.... ... . .-|+......+.++
T Consensus 5 ~~~~~~~~-~~~~kv~~~G~~~~GKTsl~~~l~~~~--~~~----------~-------~~t~~~~~~~~~~~------- 57 (174)
T cd04153 5 SLWSLFFP-RKEYKVIIVGLDNAGKTTILYQFLLGE--VVH----------T-------SPTIGSNVEEIVYK------- 57 (174)
T ss_pred HHHHHhcC-CCccEEEEECCCCCCHHHHHHHHccCC--CCC----------c-------CCccccceEEEEEC-------
Confidence 34455543 235689999999999999999994321 100 0 01222222233343
Q ss_pred ccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH--HHHHHHHHc---CCCceEEEEEcCCc
Q 003169 88 SYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG---ERIRPVLTVNKMDR 162 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t--~~~l~~~~~---~~~p~ilviNK~D~ 162 (843)
+..+.++||||+..|.......++.+|++|+|+|++++..... ..+.+.+.. .++|+++++||+|+
T Consensus 58 ---------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 ---------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred ---------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 6789999999999999888899999999999999987643221 222222222 35799999999998
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 129 ~ 129 (174)
T cd04153 129 K 129 (174)
T ss_pred C
Confidence 7
No 150
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.32 E-value=9.9e-12 Score=122.27 Aligned_cols=113 Identities=20% Similarity=0.210 Sum_probs=78.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+...-.... ...++.......+.. ++....+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--------------~~~~~~l 51 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS----------------QHTIGVEFGSKIIRV--------------GGKRVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeeEEEEEEEE--------------CCEEEEE
Confidence 7999999999999999999643211100 001111111111112 1235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH----HHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~----~~~~~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|+.++.+.+....|.. ....++|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999988999999999999999998766655444422 223578999999999986
No 151
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.32 E-value=1.4e-11 Score=124.93 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=82.0
Q ss_pred HHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhc
Q 003169 9 LRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKS 88 (843)
Q Consensus 9 ~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
+.+.|....+..+|+++|+.|+|||||+++|.... ... + . .|+......+.+.
T Consensus 9 ~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~--~~~-------~------~----~T~~~~~~~i~~~-------- 61 (190)
T cd00879 9 VLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDR--LAQ-------H------V----PTLHPTSEELTIG-------- 61 (190)
T ss_pred HHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCC--Ccc-------c------C----CccCcceEEEEEC--------
Confidence 34455655566789999999999999999994321 100 0 0 0121122233443
Q ss_pred cccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHHHH----HcCCCceEEEEEcCCcc
Q 003169 89 YRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
+..++++||||+.+|.......++.+|++++|+|+.+.-... ....+... ...+.|+++++||+|+.
T Consensus 62 --------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 62 --------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred --------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 678999999999999888888999999999999998743221 12222222 23568999999999987
No 152
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.32 E-value=1.6e-11 Score=121.95 Aligned_cols=108 Identities=23% Similarity=0.316 Sum_probs=75.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|... ... . + ...-|.+ ...+.+. +..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~----~-----~---~~t~g~~----~~~~~~~----------------~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPK----K-----V---APTVGFT----PTKLRLD----------------KYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCc----c-----c---cCcccce----EEEEEEC----------------CEEE
Confidence 4899999999999999999432 100 0 0 0111222 2233333 6889
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+++.-..+. ...+..... .++|+++|+||+|+.
T Consensus 46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 999999999999999999999999999999987533322 223333322 467999999999988
No 153
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.31 E-value=1.4e-11 Score=121.12 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=78.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|....- .. + ....+..+.....+.+. ..+....+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--~~---------~-----~~~t~~~~~~~~~~~~~------------~~~~~~~~ 53 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--TK---------D-----YKKTIGVDFLEKQIFLR------------QSDEDVRL 53 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC---------C-----CCCcEEEEEEEEEEEEc------------CCCCEEEE
Confidence 689999999999999999954211 00 0 00111111111111111 11236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~---~~~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|+++....+...-|.... ..++|+++++||+|+.
T Consensus 54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 99999999999998999999999999999999866555544443322 2478999999999986
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.30 E-value=1.5e-11 Score=140.13 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=83.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+|+++|++|+|||||+++|+.....+.....| .|.+.....+.++ ++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg---------------tTrd~~~~~i~~~----------------g~ 251 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG---------------TTRDVVEGDFELN----------------GI 251 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC---------------cEEEEEEEEEEEC----------------CE
Confidence 3589999999999999999997654433332233 3444333444554 77
Q ss_pred EEEEEcCCCCccchHH--------HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++++||||+.++... ...+++.+|++++|+|++++...... .+..+...++|+++|+||+|+.
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCC
Confidence 8999999999765432 34577899999999999987766554 5555555688999999999987
No 155
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.30 E-value=1.5e-11 Score=122.09 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=78.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-+|+++|+.|+|||||+++++...-.... . ...|.+.... .+.+. +...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~------------~t~~~~~~~~--~~~~~--------------~~~~ 53 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D------------LTIGVEFGAR--MITID--------------GKQI 53 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--C------------CccceeEEEE--EEEEC--------------CEEE
Confidence 358999999999999999999543211100 0 0112222211 12221 1256
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc---CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~---~~~p~ilviNK~D~~ 163 (843)
.++|+||||+.+|.......++.+|++++|+|+++....+....|.. ... .+.|++++.||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 89999999999998888899999999999999997655555444432 222 367899999999986
No 156
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.30 E-value=4.6e-11 Score=118.44 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|++.. ....... .. ...++ ...+ .+.+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~~~~~---~~--------~~~~~-----~~~~--------------~~~~~~~ 49 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPENVPR---VL--------PEITI-----PADV--------------TPERVPT 49 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCccCCC---cc--------cceEe-----eeee--------------cCCeEEE
Confidence 68999999999999999996532 1110000 00 01111 1111 1236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHH--cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
++|||||+.++...+...++.+|++++|+|++++...+.. ..| ..+. ..+.|+++++||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~ 116 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR 116 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 9999999999888888889999999999999987665552 233 2232 2468999999999987
No 157
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.30 E-value=1.8e-11 Score=120.49 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=78.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|++|+|||||+++|+...- .. .....++.+.....+.+. +....+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~~~~ 51 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--SE--------------QYKSTIGVDFKTKTIEVD--------------GKRVKL 51 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CC--------------CCCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 799999999999999999953321 00 001111222222222232 124689
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc---CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~---~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+.+..+.+....|.. ... .++|+++++||+|+.
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 999999999999999999999999999999998666555444432 222 468999999999976
No 158
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.29 E-value=4.8e-11 Score=117.05 Aligned_cols=114 Identities=24% Similarity=0.220 Sum_probs=78.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+.|+++|++|+|||||+++|+...-....... +.+.......+.. .+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~----------------~~~ 51 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIYTD----------------DDA 51 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC---------------CceeceEEEEEEc----------------CCe
Confidence 467999999999999999999643211111000 0111111111111 256
Q ss_pred EEEEEcCCCCccch--------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~--------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.+|||||+.+.. ......++.+|++++|+|+.+........+++++...+.|.++++||+|+.
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 89999999986543 344566889999999999998866666667777777789999999999987
No 159
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.29 E-value=2e-11 Score=121.01 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=75.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|..|+|||||+.+|....-. .++.+ |+......+.+ ++..+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~-----------~~~~p-------t~g~~~~~i~~----------------~~~~l~ 47 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL-----------ESVVP-------TTGFNSVAIPT----------------QDAIME 47 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc-----------ccccc-------cCCcceEEEee----------------CCeEEE
Confidence 789999999999999999543110 00111 11111122233 378899
Q ss_pred EEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHH--cCCCceEEEEEcCCcc
Q 003169 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~--~~~~p~ilviNK~D~~ 163 (843)
++||||+.+|.......++.+|++|+|+|+++...... +..+..+. ..++|+++|+||+|+.
T Consensus 48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred EEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 99999999999989999999999999999987543322 22223332 2578999999999987
No 160
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.29 E-value=2.4e-11 Score=120.34 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=70.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|+|+++|+.|+|||||+++|+...... ....+.|.........+ ++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~----------------~~~~~~t~~~~~~~~~~----------------~~~~ 48 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV----------------APYPFTTKSLFVGHFDY----------------KYLR 48 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc----------------CCCCCcccceeEEEEcc----------------CceE
Confidence 589999999999999999995432110 00112233222222222 2678
Q ss_pred EEEEcCCCCccch--------HHHHHHh-hccCeEEEEEeCCCccc---hhHHHHHHHHHcC--CCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFS--------SEVTAAL-RITDGALVVVDCIEGVC---VQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~--------~e~~~~l-~~~D~ailVvda~~gv~---~~t~~~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
++||||||+.+.. .....++ ..+|++++|+|+.+... ......+..+... +.|+++++||+|+.
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 9999999985321 1122222 34799999999987533 1122344444444 78999999999987
No 161
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.28 E-value=7.3e-11 Score=123.03 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=82.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+.|+++|++|+|||||+++|+........ . ...|. + ++ +. .++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~--------~------~~~g~-i-----~i-~~--------------~~~ 82 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI--------S------DIKGP-I-----TV-VT--------------GKK 82 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcc--------c------ccccc-E-----EE-Ee--------------cCC
Confidence 3568999999999999999999654221000 0 11121 1 11 11 136
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.+++++||||+. ..+..+++.+|.+++|+|+..|...++..++..+...++|.+ +|+||+|+.
T Consensus 83 ~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 83 RRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred ceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 789999999975 677788899999999999999999999999999888899965 499999986
No 162
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.28 E-value=2e-11 Score=119.94 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=79.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|+.++|||||+++|+...-.. +...+.+.+.....+.++ +....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------------~~~~~ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN----------------QYQATIGIDFLSKTMYLE--------------DKTVR 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc----------------cCCCceeeeEEEEEEEEC--------------CEEEE
Confidence 379999999999999999996432211 111122333222233332 12467
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HH-HcC--CCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA-LGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~-~~~--~~p~ilviNK~D~~ 163 (843)
+++|||||+..|.......++.+|++++|+|+.++.+.+....|. .. ... ++|+++++||+|+.
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 999999999999988899999999999999999866554433332 22 223 48999999999985
No 163
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.27 E-value=2.7e-11 Score=120.34 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+...-. .... ...|.+. ....+.+. +....+
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~--~~~~------------~t~~~~~--~~~~~~~~--------------~~~~~~ 51 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS--NQYK------------ATIGADF--LTKEVTVD--------------DKLVTL 51 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--cCcC------------CccceEE--EEEEEEEC--------------CEEEEE
Confidence 6999999999999999999543210 0000 0001111 11112221 235678
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-----HH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-----~~---~~~~p~ilviNK~D~~ 163 (843)
+++||||+.+|.......++.+|++|+|+|+.+....+...-|.. +. ..++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 899999999999888899999999999999987654333333322 11 1268999999999987
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.27 E-value=2e-11 Score=139.77 Aligned_cols=111 Identities=22% Similarity=0.310 Sum_probs=82.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|++|+|||||+++|+.....+..... |.|.+.....+.+. +..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~---------------gtT~d~~~~~i~~~----------------g~~ 264 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIA---------------GTTRDVIEEHINLD----------------GIP 264 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCC---------------CcccccEEEEEEEC----------------CeE
Confidence 48999999999999999999654432222222 33444333344443 678
Q ss_pred EEEEcCCCCccchHH--------HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++|+||||+.++... +...++.+|++++|+|++++...+....|.. ..++|+++|+||+|+.
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLT 334 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhcc
Confidence 999999999876432 3446788999999999998877776666665 4578999999999987
No 165
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.27 E-value=3.3e-11 Score=117.34 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=74.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|+.|+|||||+++|....- ..++.+ |+......+.+. +..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~-----------~~~~~~-------t~~~~~~~~~~~----------------~~~~~ 47 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF-----------SEDTIP-------TVGFNMRKVTKG----------------NVTLK 47 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC-----------CcCccC-------CCCcceEEEEEC----------------CEEEE
Confidence 78999999999999999943211 111111 111111222232 57899
Q ss_pred EEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-hHHHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 102 LIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-~t~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
++||||+..|.......++.+|++++|+|+.+.... +....+..... .++|+++++||+|..
T Consensus 48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 999999999999999999999999999999864332 22233333322 467999999999987
No 166
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.27 E-value=3.2e-11 Score=123.84 Aligned_cols=116 Identities=23% Similarity=0.218 Sum_probs=74.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|++|+|||||+++|+........ .. +.|+......+.+. +
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-~~---------------~~t~~~~~~~~~~~---------------~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED-QL---------------FATLDPTTRRLRLP---------------D 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC-cc---------------ceeccceeEEEEec---------------C
Confidence 44679999999999999999999654311100 00 11332222233332 1
Q ss_pred ceEEEEEcCCCCccc-hH-------HHHHHhhccCeEEEEEeCCCccchhHHH----HHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDF-SS-------EVTAALRITDGALVVVDCIEGVCVQTET----VLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df-~~-------e~~~~l~~~D~ailVvda~~gv~~~t~~----~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...+.+|||||+.+. .. .+...+..+|++++|+|+.++....... .++.....++|+++|+||+|+.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 348999999998542 11 1223467899999999999876544332 2233333467999999999987
No 167
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.26 E-value=3.4e-11 Score=121.53 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|+.|+|||||++++++.... +.. ...|++... ..+.+. +..+..+
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~------------~~~---~t~~~~~~~--~~~~~~-------------~~~~~~l 54 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV------------NTV---PTKGFNTEK--IKVSLG-------------NSKGITF 54 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC------------CcC---CccccceeE--EEeecc-------------CCCceEE
Confidence 6999999999999999999543211 000 011222211 111111 1236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+++.-..... .++......++|+++++||+|+.
T Consensus 55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 9999999999988888889999999999999875333221 22233334578999999999986
No 168
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.26 E-value=2.8e-11 Score=119.03 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=77.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+...-... .+...|.+.... .+.+. +....+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~~~~~~~~~~--~~~~~--------------~~~~~~ 51 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD--------------LAATIGVDFKVK--TLTVD--------------GKKVKL 51 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--------------cCCcccceEEEE--EEEEC--------------CEEEEE
Confidence 689999999999999999954321110 011112222211 12221 125689
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-----HHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-----~~~~~~~p~ilviNK~D~~ 163 (843)
.++||||+..|.......++.+|++++|+|+++....+....|. .....+.|+++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 99999999999888888899999999999998765544433332 2223567899999999987
No 169
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.4e-11 Score=127.63 Aligned_cols=157 Identities=22% Similarity=0.286 Sum_probs=117.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE-eecCccccccccceeeeeeEEEEEeechhhhhccccc------
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR-MTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGE------ 92 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~-~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~------ 92 (843)
.+++++|..|+|||||+.-| ..|..+.. .|+.+ -+-..+.|.+.|-|-..+.-.+.|+...+.++ |...
T Consensus 168 vRvAVlGg~D~GKSTLlGVL--TQgeLDnG-~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVN-Y~~~~taEEi 243 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVL--TQGELDNG-NGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVN-YAQNMTAEEI 243 (591)
T ss_pred EEEEEecCcccCcceeeeee--ecccccCC-CCeeeeehhcchhhhccCcccccchhcccccccccccc-hhhcccHHHH
Confidence 47999999999999999988 33333332 34333 24456788998988776665666654332222 2221
Q ss_pred cCCCceEEEEEcCCCCccchHHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCC
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~ 170 (843)
.+..+..++|||..||..|...++.++. --|.|++||+|..|+...|++++..+...++|.+++++|||+. ...
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~----~~~ 319 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLV----DRQ 319 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccc----cch
Confidence 3456778999999999999999998886 4799999999999999999999999999999999999999988 432
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 003169 171 GEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~ 190 (843)
-+++++.++..++.
T Consensus 320 ------~~~~tv~~l~nll~ 333 (591)
T KOG1143|consen 320 ------GLKKTVKDLSNLLA 333 (591)
T ss_pred ------hHHHHHHHHHHHHh
Confidence 35556666655553
No 170
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.25 E-value=3.2e-11 Score=118.98 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|+.|+|||||+++|+...- ... +.+ |+... ...... ++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~--~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF--VDD---------YDP-------TIEDSYRKQIEI--------------DGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--Ccc---------cCC-------chhhhEEEEEEE--------------CCEEEE
Confidence 689999999999999999965321 110 000 00000 011111 123578
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-----HHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-----~~~~~~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|+.+........-| +.....++|+++++||+|+.
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~ 118 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE 118 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 89999999999999888899999999999999875443332222 22222467999999999986
No 171
>PRK04213 GTP-binding protein; Provisional
Probab=99.25 E-value=5.9e-11 Score=121.57 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|+.|+|||||+++|....- ......|.|.... .+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~--~~~~----------------- 51 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPN--HYDW----------------- 51 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCce--EEee-----------------
Confidence 3456899999999999999999943210 1112235555432 2222
Q ss_pred ceEEEEEcCCCCcc-----------chHHHH----HHhhccCeEEEEEeCCCc-----------cchhHHHHHHHHHcCC
Q 003169 97 EYLINLIDSPGHVD-----------FSSEVT----AALRITDGALVVVDCIEG-----------VCVQTETVLRQALGER 150 (843)
Q Consensus 97 ~~~i~liDTPGh~d-----------f~~e~~----~~l~~~D~ailVvda~~g-----------v~~~t~~~l~~~~~~~ 150 (843)
+ .+++|||||+.+ |...+. .++..+|++++|+|+... ....+..++..+...+
T Consensus 52 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 130 (201)
T PRK04213 52 G-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELG 130 (201)
T ss_pred c-ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcC
Confidence 1 589999999632 222222 234567899999999753 2234566777777788
Q ss_pred CceEEEEEcCCcc
Q 003169 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNK~D~~ 163 (843)
+|+++++||+|+.
T Consensus 131 ~p~iiv~NK~Dl~ 143 (201)
T PRK04213 131 IPPIVAVNKMDKI 143 (201)
T ss_pred CCeEEEEECcccc
Confidence 9999999999986
No 172
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.24 E-value=5.2e-11 Score=118.10 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=78.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||++++.... ... +....+++......+.+. +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f~~--------------~~~~t~~~~~~~~~~~~~--------------~~~~ 52 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNP--------------SFISTIGIDFKIRTIELD--------------GKKI 52 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--CCc--------------ccccCccceEEEEEEEEC--------------CEEE
Confidence 4689999999999999999995432 111 000011111111122222 2356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH---cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~---~~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++|+|+|+.++.+.+...-|.. .. ..+.|++++.||+|+.
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 89999999999999888888999999999999988655444333332 22 2467899999999987
No 173
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.24 E-value=4.9e-11 Score=118.38 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... .... ..-|+........+. .+.+...+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~~~~----------------~~~t~~~~~~~~~~~------------~~~~~~~l 51 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--FEKK----------------YVATLGVEVHPLDFH------------TNRGKIRF 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCC----------------CCCceeeEEEEEEEE------------ECCEEEEE
Confidence 78999999999999999996432 1100 001222111122221 12236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc--CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
.++||||+.+|.......++.+|++|+|+|++++.+.+....| ..+.. .++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 9999999999887777788999999999999987665554334 22222 268999999999986
No 174
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.24 E-value=6.1e-11 Score=117.31 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=77.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||+++++...-.. +....+++......+.+. +...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~--------------~~~~ 51 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE----------------SYISTIGVDFKIRTIELD--------------GKTI 51 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCccceeEEEEEEEEC--------------CEEE
Confidence 3689999999999999999995322100 000111111111122221 2356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc---CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~---~~~p~ilviNK~D~~ 163 (843)
.+.++||||+.+|.......++.+|++|+|+|+++.........|. .... .+.|++++.||+|+.
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc
Confidence 8999999999999988889999999999999998754433322232 2222 457899999999976
No 175
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.24 E-value=3.4e-11 Score=123.13 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+... ....... .+.......+.+. +....+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~~~~~~---------------t~~~~~~~~~~~~--------------~~~~~l 49 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FEPKYRR---------------TVEEMHRKEYEVG--------------GVSLTL 49 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCC---------------chhhheeEEEEEC--------------CEEEEE
Confidence 48999999999999999996532 1110000 0001111122222 124689
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-----HHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-----~~~~~~~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|......+++.+|++|+|+|++++...+....| ......++|+++++||+|+.
T Consensus 50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 9999999999988878889999999999999886544433222 22223578999999999986
No 176
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.24 E-value=4.5e-11 Score=120.04 Aligned_cols=113 Identities=22% Similarity=0.265 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++++........ .. . +.......+.+. +.++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--~~------t---------~~~~~~~~~~~~--------------~~~~~ 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--YP------T---------IENTFSKIIRYK--------------GQDYH 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--Cc------c---------hhhhEEEEEEEC--------------CEEEE
Confidence 68999999999999999999643211000 00 0 000001111221 12567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHH-HHHHH----cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~-l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|.......+..+|++++|+|.+++...+.... +.... ..+.|+++++||+|+.
T Consensus 51 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 51 LEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 8999999999999888889999999999999998765554332 23222 3467999999999986
No 177
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.23 E-value=5.1e-11 Score=115.81 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+....... ..+..+.......+... .....+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~~~~~ 51 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----------------YKSTIGVDFKSKTIEID--------------GKTVKL 51 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc----------------cCCceeeeeEEEEEEEC--------------CEEEEE
Confidence 699999999999999999953321111 00011111111222221 125789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc---CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~---~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++++|+|+.+.........|. .... .+.|.++++||+|+.
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 99999999999999999999999999999998854433333333 3333 347899999999985
No 178
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.23 E-value=1.4e-10 Score=118.88 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeee--eeEEEEEeechhhhhccccccCCCce
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS--TGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..|+|||||+++|+... .... +. -|+.. ....+.+. .+...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~~~~---------~~-------~t~~~d~~~~~v~~~-------------~~~~~ 50 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--FSQH---------YK-------ATIGVDFALKVIEWD-------------PNTVV 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC---------CC-------CceeEEEEEEEEEEC-------------CCCEE
Confidence 68999999999999999995431 1110 00 02211 11111221 12467
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH-------cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL-------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~-------~~~~p~ilviNK~D~~ 163 (843)
.+.||||||+..|.......++.+|++|+|+|.++....+....|.. +. ..++|+++|+||+|+.
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 89999999999999888889999999999999987655444433321 11 2467999999999986
No 179
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.23 E-value=4.7e-11 Score=117.56 Aligned_cols=113 Identities=18% Similarity=0.178 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+...-... .....|.+.....+ .+. ..+..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~--------------~~~t~~~~~~~~~v--~~~--------------~~~~~~ 52 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSEN--------------QESTIGAAFLTQTV--NLD--------------DTTVKF 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--------------CCCccceeEEEEEE--EEC--------------CEEEEE
Confidence 799999999999999999954321110 01111212211112 221 236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
++|||||+.+|.......++.+|++++|+|+++.-.......| ..+.. .++|+++++||+|+.
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 119 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE 119 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 9999999999988888889999999999999875433332222 33322 357889999999976
No 180
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.23 E-value=6.3e-11 Score=117.33 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|+.|+|||||+++|+... ....... .-|.+.... .+.. ++....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~~~~------------t~~~~~~~~--~~~~--------------~~~~~~ 52 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMADCPH------------TIGVEFGTR--IIEV--------------NGQKIK 52 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCc------------ccceeEEEE--EEEE--------------CCEEEE
Confidence 589999999999999999995321 1110000 001111111 1112 123568
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH---cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~---~~~~p~ilviNK~D~~ 163 (843)
+.|+||||+..|.......++.+|++|+|+|.++..+.+....|.. .. ..+.|++++.||+|+.
T Consensus 53 l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 53 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 8999999999999999999999999999999998655554434432 21 2456888999999986
No 181
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.22 E-value=1.2e-10 Score=118.52 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=76.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...++|+++|+.|+|||||+++|+..... .. + ....|.|...... .+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~~-------~------~~~~~~t~~~~~~--~~----------------- 68 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNL-AR-------T------SKTPGRTQLINFF--EV----------------- 68 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCc-cc-------c------cCCCCceeEEEEE--ec-----------------
Confidence 45789999999999999999999643210 00 0 0111233322111 11
Q ss_pred ceEEEEEcCCCCc----------cchHHHHHHhh---ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHV----------DFSSEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~----------df~~e~~~~l~---~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.||||||+. .|...+...++ .++++++|+|+..+.......+++.+...++|+++++||+|+.
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~ 148 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKL 148 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 3579999999963 23333333444 4468889999988877776667777777889999999999976
No 182
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.22 E-value=3.8e-11 Score=118.78 Aligned_cols=112 Identities=18% Similarity=0.299 Sum_probs=73.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... .. + ++.+... +.... .+.+ +++...+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~----~-----~~~~t~~----~~~~~--~~~~--------------~~~~~~~ 49 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI----G-----EYDPNLE----SLYSR--QVTI--------------DGEQVSL 49 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc----c-----ccCCChH----HhceE--EEEE--------------CCEEEEE
Confidence 48999999999999999996421 11 1 0101000 11111 1111 1235678
Q ss_pred EEEcCCCCcc-chHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH-----cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~d-f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~-----~~~~p~ilviNK~D~~ 163 (843)
++|||||+.. +.......++.+|++|+|+|+++..+.+....|. .+. ..++|+++|+||+|+.
T Consensus 50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 9999999995 4567788899999999999999876554433332 222 2368999999999975
No 183
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.22 E-value=6.8e-11 Score=116.66 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=75.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.++|||||+++|+...-.- +....++.+.....+.. ++....+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~--------------~~~~~~l 51 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS----------------KYLPTIGIDYGVKKVSV--------------RNKEVRV 51 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEE--------------CCeEEEE
Confidence 69999999999999999995432110 00001111111111111 1236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH----c----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL----G----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~----~----~~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|.......++.+|++|+|+|+++....+...-|. .+. . .+.|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 99999999999888888889999999999999765444433332 121 1 357889999999986
No 184
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.22 E-value=7e-11 Score=115.83 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=74.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+... .......+ . +.+. ...+.+. +....+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t--~----------~~~~---~~~~~~~--------------~~~~~~ 51 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPT--I----------EDSY---RKQVVID--------------GETCLL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcCCcCCc--c----------hheE---EEEEEEC--------------CEEEEE
Confidence 69999999999999999996432 11100010 0 0000 0111121 224678
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-H----HHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-R----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~----~~~~~~~p~ilviNK~D~~ 163 (843)
++|||||+.+|.......++.+|++++|+|..+....+....| . .....++|+++++||+|+.
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 119 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA 119 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8999999999999999999999999999999875433332222 2 2223478999999999987
No 185
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.22 E-value=1e-10 Score=116.32 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|.... . ..+. -|+......+.+. +..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~----------~~~~-------~T~~~~~~~~~~~----------------~~~i 45 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--F----------MQPI-------PTIGFNVETVEYK----------------NLKF 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--C----------CCcC-------CcCceeEEEEEEC----------------CEEE
Confidence 48899999999999999994321 0 0110 1211111223332 7889
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+++||||+.+|.......++.+|++++|+|+++.-.... ...+..... .+.|+++++||+|+.
T Consensus 46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 999999999999888889999999999999987432211 222222221 246889999999986
No 186
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.22 E-value=1.7e-10 Score=114.56 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=77.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..++|||||+++++... ... +....++.......+.+ ++..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~--------------~~~~ 53 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNK--FDT--------------QLFHTIGVEFLNKDLEV--------------DGHF 53 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCC--CCc--------------CcCCceeeEEEEEEEEE--------------CCeE
Confidence 34689999999999999999995321 110 00011111111112222 2235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-----HH---cCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-----AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-----~~---~~~~p~ilviNK~D~~ 163 (843)
..+.|+||||+..|.......++.+|++++|+|.++....+...-|.. +. ..++|+++++||+|+.
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 678999999999999888889999999999999987655444333322 11 2457999999999986
No 187
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.22 E-value=1.1e-10 Score=115.24 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=75.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++++. +........ |+... ...+.. ++..+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 50 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEKYDP----------------TIEDSYRKQVEV--------------DGQQCM 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcccCC----------------cchheEEEEEEE--------------CCEEEE
Confidence 699999999999999999963 222111011 11100 111222 123567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHH----HcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
++|+||||+..|.......++.+|++++|+|.++....+... .+... ...++|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 51 LEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 889999999999999999999999999999998755443322 22222 23568999999999986
No 188
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.22 E-value=1e-10 Score=116.41 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=75.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.++|||||+.+|.... . ..+.+ .-|.++. .+.+ .+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~--~----------~~~~~---t~g~~~~----~~~~----------------~~~ 53 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQ--S----------VTTIP---TVGFNVE----TVTY----------------KNV 53 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCC--C----------ccccC---CcccceE----EEEE----------------CCE
Confidence 3589999999999999999994311 1 00101 1122221 1222 267
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+|.......++.+|++|+|+|+++...... ...|.... ..++|++++.||+|+.
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 89999999999998888888999999999999987532222 22233222 2357999999999986
No 189
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=113.87 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcc-ccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
....-||++|.+|+|||||+|+|+...+.. ....+| .|-.... +.+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG---------------rTq~iNf--f~~---------------- 68 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG---------------RTQLINF--FEV---------------- 68 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC---------------ccceeEE--EEe----------------
Confidence 456689999999999999999997654322 112244 4444332 233
Q ss_pred CceEEEEEcCCCCc----------cchHHHHHHh---hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCc
Q 003169 96 NEYLINLIDSPGHV----------DFSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~----------df~~e~~~~l---~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
+..+.|+|.||+. .+...+...+ ....+++++||+..++...+++++..+...++|+++++||+|+
T Consensus 69 -~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 69 -DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred -cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 2238899999974 2233333444 3578899999999999999999999999999999999999998
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 148 i 148 (200)
T COG0218 148 L 148 (200)
T ss_pred C
Confidence 8
No 190
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.21 E-value=8.2e-11 Score=114.02 Aligned_cols=110 Identities=23% Similarity=0.203 Sum_probs=79.5
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEE
Q 003169 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||+++|......... ...+.|.........+. ....+.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS---------------PVPGTTTDPVEYVWELG---------------PLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC---------------CCCCcEECCeEEEEEec---------------CCCcEEEE
Confidence 5899999999999999554322111 11223333332222222 25689999
Q ss_pred cCCCCccch-------HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 104 DSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~-------~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
||||+.++. ..+...++.+|++++|+|+..+.......+.......+.|.++++||+|+.
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 999988764 345568899999999999999887777765667777889999999999987
No 191
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.21 E-value=9.9e-11 Score=119.87 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=78.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|..|+|||||+.++++.. ... +....+++......+.+. ++...+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f~~--------------~~~~Ti~~~~~~~~i~~~--------------~~~v~l 51 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--FCE--------------ACKSGVGVDFKIKTVELR--------------GKKIRL 51 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--CCC--------------cCCCcceeEEEEEEEEEC--------------CEEEEE
Confidence 58999999999999999995321 111 000011111111122221 235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+||||+|+..|.......++.+|++|+|+|.++.-+.+...-|.... ..+.|+++|.||+|+.
T Consensus 52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 99999999999999999999999999999999876666654444322 2467899999999986
No 192
>PTZ00369 Ras-like protein; Provisional
Probab=99.21 E-value=6.8e-11 Score=120.00 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=76.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||+++++...- .. .+.+ .-|.+.. ..+.. ++...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~---------~~~~---t~~~~~~---~~~~~--------------~~~~~ 53 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--ID---------EYDP---TIEDSYR---KQCVI--------------DEETC 53 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--Cc---------CcCC---chhhEEE---EEEEE--------------CCEEE
Confidence 35899999999999999999964321 10 0000 0011110 11111 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HH----HcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~----~~~~~p~ilviNK~D~~ 163 (843)
.++||||||+.+|.......++.+|++++|+|+++..+.....-|. .. ...++|+++++||+|+.
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 8999999999999999999999999999999999865433332222 22 22367999999999986
No 193
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.21 E-value=9.4e-11 Score=114.91 Aligned_cols=113 Identities=19% Similarity=0.164 Sum_probs=76.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...-.... . +.++.......+.+. +....+
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~--------------~~~~~~~~~~~~~~~--------------~~~~~~ 51 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--E--------------STTQASFFQKTVNIG--------------GKRIDL 51 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--C--------------CccceeEEEEEEEEC--------------CEEEEE
Confidence 7999999999999999999653221100 0 001111111111111 125679
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH----HHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~----~~~~~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++++|+|+.++...+....|. .....++|+++++||+|+.
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 99999999998888888889999999999999876554443332 2223368899999999987
No 194
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.20 E-value=1.5e-10 Score=115.39 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|+.|+|||||+++|....- .. .....|+++ ..+.+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~------------~~---~~~t~g~~~----~~i~~~---------------- 56 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI------------SH---ITPTQGFNI----KTVQSD---------------- 56 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC------------cc---cCCCCCcce----EEEEEC----------------
Confidence 4456799999999999999999943210 00 011123222 122332
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-hHHHHH----HHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-~t~~~l----~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.++||||+..|...+...++.+|++++|+|+.+.... .....+ ......++|+++++||+|+.
T Consensus 57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 67899999999999988888889999999999999863222 112222 22233568999999999987
No 195
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.20 E-value=4.1e-11 Score=115.41 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=67.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
++|+++|++|+|||||+++|.... . .+ .-|+ ...|. .
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~-----------~--~~-------~~t~-----~~~~~----------------~-- 37 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEE-----------I--LY-------KKTQ-----AVEYN----------------D-- 37 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCc-----------c--cc-------ccce-----eEEEc----------------C--
Confidence 379999999999999999993221 0 00 0011 22332 2
Q ss_pred EEEEcCCCCc----cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHV----DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~----df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+|||||.. .+...+..+++.+|++++|+|++++.+.+...++.. .+.|.++++||+|+.
T Consensus 38 -~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 38 -GAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLA 101 (142)
T ss_pred -eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccC
Confidence 689999983 334444456889999999999999887776543332 235999999999986
No 196
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.20 E-value=9.5e-11 Score=129.80 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=75.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
....|+++|++|+|||||+++|+... .+..... +.|.+.....+.+. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~---------------~tT~d~~~~~i~~~---------------~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQL---------------FATLDPTTRRLDLP---------------DG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCC---------------ccccCCEEEEEEeC---------------CC
Confidence 45689999999999999999995543 2211112 22333333334442 25
Q ss_pred eEEEEEcCCCCc-cch-------HHHHHHhhccCeEEEEEeCCCccchhHH----HHHHHHHcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHV-DFS-------SEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~-df~-------~e~~~~l~~~D~ailVvda~~gv~~~t~----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.|+||||.. +.. ..+...++.||++++|+|++++...... .+++.+...++|+++|+||+|+.
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 689999999983 211 1233457889999999999986554332 23333333478999999999986
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.20 E-value=8.3e-11 Score=129.64 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=90.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+++|+|.+|+|||||+|+|+....+|....+|+ |.+.-...+... ++.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT---------------TRDviee~i~i~----------------G~p 266 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT---------------TRDVIEEDINLN----------------GIP 266 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC---------------ccceEEEEEEEC----------------CEE
Confidence 4899999999999999999999999888877875 333333444554 899
Q ss_pred EEEEcCCCCccchH--------HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSS--------EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~--------e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.|+||.|..+-.. ....++..||.+++|+|++.+...+...++. ....+.|.++++||.|+.
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~ 337 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcc
Confidence 99999999764322 2556788999999999999987777776666 556778999999999998
No 198
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.20 E-value=1.6e-10 Score=113.53 Aligned_cols=112 Identities=21% Similarity=0.255 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||+++|+...- .....+. ..+ .. .....+ ++....+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~--~~~----------~~---~~~~~~--------------~~~~~~~ 50 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPT--KAD----------SY---RKKVVL--------------DGEDVQL 50 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCc--chh----------hE---EEEEEE--------------CCEEEEE
Confidence 799999999999999999964321 1100110 000 00 000111 1235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-----hHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-----~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++||||+.+|......+++.+|++++|+|..+.-+. ....+++.....++|+++++||+|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~ 118 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE 118 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence 9999999999999999999999999999998864321 11222222223578999999999987
No 199
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=1e-10 Score=115.89 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=74.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-+.|.++|+.|+|||+|..+|.+... ..+. + ++... +.+.. ...++.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~------~~T~--t-----------S~e~n-~~~~~-------------~~~~~~ 49 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKT------VPTV--T-----------SMENN-IAYNV-------------NNSKGK 49 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---------B----------------SSEE-EECCG-------------SSTCGT
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCc------CCee--c-----------cccCC-ceEEe-------------ecCCCC
Confidence 35789999999999999999966411 1111 1 22111 11111 112355
Q ss_pred EEEEEcCCCCccchHHHHHH---hhccCeEEEEEeCCCccchhHH-------HHHHHHH--cCCCceEEEEEcCCccccc
Q 003169 99 LINLIDSPGHVDFSSEVTAA---LRITDGALVVVDCIEGVCVQTE-------TVLRQAL--GERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~---l~~~D~ailVvda~~gv~~~t~-------~~l~~~~--~~~~p~ilviNK~D~~~~~ 166 (843)
.+.+||+|||..+....... +..+-++|+|||++. ...+-+ .++.... ..++|++|+.||.|+.
T Consensus 50 ~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~--- 125 (181)
T PF09439_consen 50 KLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF--- 125 (181)
T ss_dssp CECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST---
T ss_pred EEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc---
Confidence 78999999999998887776 889999999999974 222222 2222222 3456788999999998
Q ss_pred ccCC-HHHHHHHHHHHHHHh
Q 003169 167 LQVD-GEEAYQTFQKVIENA 185 (843)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~ 185 (843)
.+- +..+...+++-++.+
T Consensus 126 -~A~~~~~Ik~~LE~Ei~~l 144 (181)
T PF09439_consen 126 -TAKPPKKIKKLLEKEIDKL 144 (181)
T ss_dssp -T---HHHHHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHHHHHHHH
Confidence 553 444444555444443
No 200
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.19 E-value=2e-10 Score=113.10 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.++... .. ..+.+ .-|..+ ..+.+. ...+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~--~~----------~~~~p---t~g~~~----~~~~~~----------------~~~~ 46 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG--EI----------VTTIP---TIGFNV----ETVEYK----------------NISF 46 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CC----------cccCC---CCCcce----EEEEEC----------------CEEE
Confidence 5899999999999999998421 11 11111 112211 112222 6789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+++..... ....|..... .+.|+++++||+|+.
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 99999999999888888899999999999998643221 1222332221 357899999999986
No 201
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.19 E-value=1e-10 Score=116.07 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=76.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|.+|+|||||++++.... ... .+.+ |+... ...+.+. +....
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~--~~~---------~~~~-------t~~~~~~~~~~~~--------------~~~~~ 50 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV--FIE---------SYDP-------TIEDSYRKQVEID--------------GRQCD 50 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCc---------ccCC-------cchheEEEEEEEC--------------CEEEE
Confidence 69999999999999999995332 111 0000 11100 1112221 23568
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-----HHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-----~~~~~~~~p~ilviNK~D~~ 163 (843)
+.+|||||+.+|.......++.+|++++|+|..+....+...-| +.....++|+++++||+|+.
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~ 119 (168)
T cd04177 51 LEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE 119 (168)
T ss_pred EEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence 89999999999999999999999999999999875444333222 22224578999999999986
No 202
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.19 E-value=1.1e-10 Score=114.75 Aligned_cols=109 Identities=24% Similarity=0.246 Sum_probs=74.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.|+++|..|+|||||+++|....-. . . ....|.++. .+.+. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~----------~---~~t~~~~~~----~~~~~---------------~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--T----------T---IPTVGFNVE----MLQLE---------------KHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--c----------c---cCccCcceE----EEEeC---------------CceEE
Confidence 3789999999999999999543210 0 0 001122211 11221 25789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHH----HcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
+++||||+..|.......++.+|++|+|+|+.+...... ...+... ...+.|+++++||+|+.
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 999999999998888888999999999999987642221 1222222 12578999999999986
No 203
>PLN03118 Rab family protein; Provisional
Probab=99.19 E-value=1.2e-10 Score=120.48 Aligned_cols=114 Identities=19% Similarity=0.252 Sum_probs=78.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++|+... +.. . ....+.......+.+. +..+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--~-------------~~t~~~~~~~~~~~~~--------------~~~~ 62 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--L-------------APTIGVDFKIKQLTVG--------------GKRL 62 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--c-------------CCCceeEEEEEEEEEC--------------CEEE
Confidence 3589999999999999999996532 111 0 0011111111122222 2357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH-----cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~-----~~~~p~ilviNK~D~~ 163 (843)
.++|+||||+.+|.......++.+|++|+|+|+++....+.. ..|.... ..+.|+++++||+|+.
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 133 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 899999999999999899999999999999999986554443 2343221 2356889999999986
No 204
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.18 E-value=2.6e-10 Score=114.91 Aligned_cols=111 Identities=19% Similarity=0.174 Sum_probs=76.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
+..+|+++|..++|||||+.+|... ... .+ ...-|.++ ..+.+. +
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~--~~~----------~~---~pt~g~~~----~~~~~~----------------~ 60 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLG--EIV----------TT---IPTIGFNV----ETVEYK----------------N 60 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCc----------cc---cCCcceeE----EEEEEC----------------C
Confidence 3458999999999999999998421 111 00 11112222 122332 6
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
..++|+||||+..|.......++.+|++|+|+|+++.-.... ...+..... .+.|++|++||+|+.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 889999999999998888888999999999999997433222 122222211 367899999999987
No 205
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.18 E-value=1.5e-10 Score=114.48 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+++++... .... +. + |+.... ..+.+. .+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~--f~~~------~~---~-------t~~~~~~~~~~~~--------------~~~~ 49 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT--FRES------YI---P-------TIEDTYRQVISCS--------------KNIC 49 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCC------cC---C-------cchheEEEEEEEC--------------CEEE
Confidence 369999999999999999996432 1110 00 0 110000 011111 1357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc------CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~------~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+|......+++.+|++|+|+|.++....... ..+..... .++|++++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 50 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 899999999999998888889999999999999886654432 33332222 467999999999986
No 206
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.18 E-value=1.3e-10 Score=114.31 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+++++... .... +.+ |+. .....+.. ++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~---------~~~-------t~~~~~~~~~~~--------------~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEK---------YDP-------TIEDSYRKQIEV--------------DGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcc---------cCC-------chhhhEEEEEEE--------------CCEEE
Confidence 379999999999999999996432 1110 000 110 00011111 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH----cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~----~~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|.++.........| ..+. ..++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE 119 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 788999999999988888889999999999999875443332222 2222 2367999999999986
No 207
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.18 E-value=1.2e-10 Score=115.38 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=75.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|+... ... .+.+ .-|++... ..+.. .+....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~~---------~~~~---t~~~~~~~--~~~~~--------------~~~~~~ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FTS---------AFVS---TVGIDFKV--KTVFR--------------NDKRVK 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCC---------CCCC---ceeeEEEE--EEEEE--------------CCEEEE
Confidence 479999999999999999995422 100 0000 00111111 11111 112568
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc---CCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~---~~~p~ilviNK~D~~ 163 (843)
+.++||||+.+|.......++.+|++++|+|.++....+...-|. .... ...|+++++||+|+.
T Consensus 52 ~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 52 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 999999999999998899999999999999998754433322232 2222 356889999999986
No 208
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.18 E-value=2.9e-10 Score=116.12 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+||+++|++|+|||||.|+|++....... ....|.|.........+. +..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~----------------~~~ 50 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWD----------------GRR 50 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEEC----------------CeE
Confidence 58999999999999999999765433222 112345555554455554 789
Q ss_pred EEEEcCCCCccch-------HHHHHH----hhccCeEEEEEeCCCccchhHHHHHHHHHcC-C----CceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFS-------SEVTAA----LRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~-------~e~~~~----l~~~D~ailVvda~~gv~~~t~~~l~~~~~~-~----~p~ilviNK~D~~ 163 (843)
+++|||||..++. .++.+. ....|++++|+|+.. .......+++.+.+. + .++++++|+.|..
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 9999999988762 223322 345799999999987 777777777766442 2 4688999999977
No 209
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.17 E-value=2.5e-10 Score=114.32 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=75.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..++|||||+.+|... .. .++.+ |+......+.+. +.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~--~~----------~~~~~-------t~~~~~~~~~~~----------------~~ 57 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLG--ES----------VTTIP-------TIGFNVETVTYK----------------NI 57 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcC--CC----------CCcCC-------ccccceEEEEEC----------------CE
Confidence 357999999999999999999421 11 11111 111111122232 67
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-hHHHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-~t~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+..|.......++.+|++|+|+|+++.-.. .....|..+.. .+.|+++++||+|+.
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 899999999999998888889999999999999864322 22333333322 357899999999987
No 210
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.17 E-value=1.8e-10 Score=113.83 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=76.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|.+++|||||+++|+...-... ....++.+.....+... +...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~t~~~~~~~~~~~~~--------------~~~~ 52 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD----------------SKSTIGVEFATRSIQID--------------GKTI 52 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC----------------CCCccceEEEEEEEEEC--------------CEEE
Confidence 35899999999999999999953321100 00111222122222222 2246
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
.++++||||+..|.......++.+|++|+|+|+++....+...-| ..+. ..++|+++++||+|+.
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~ 121 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR 121 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 789999999999988888899999999999999875544433323 2222 2357888999999986
No 211
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.17 E-value=2.1e-10 Score=117.38 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=77.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..|+|||||+++|+... ... . + ....|+.. ....+.+. +..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~~~----~-----~---~~t~~~~~--~~~~~~~~--------------~~~ 54 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--FSG----S-----Y---ITTIGVDF--KIRTVEIN--------------GER 54 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--CCC----C-----c---Ccccccee--EEEEEEEC--------------CEE
Confidence 35689999999999999999995321 100 0 0 00011111 11122221 234
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH--cCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
..++|+||||+..|.......++.+|++++|+|+++.-..+....|. ... ....|+++++||+|+.
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~ 123 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP 123 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 67899999999999988899999999999999998765444333332 221 2357889999999986
No 212
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.8e-10 Score=112.36 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=89.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|.++|..|+|||.|+-++ .+ |..+++...-|-++-...++.. +++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf-----------~~-----~~f~e~~~sTIGVDf~~rt~e~--------------~gk 56 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF-----------KD-----DTFTESYISTIGVDFKIRTVEL--------------DGK 56 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh-----------cc-----CCcchhhcceeeeEEEEEEeee--------------cce
Confidence 44678999999999999999998 22 2333334444455555555554 345
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH----HcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
..++++|||.|+.+|...+.+..|.|+|+|+|.|.++--+......|-+= ...++|.++|.||+|+.
T Consensus 57 ~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 57 TIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred EEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 77999999999999999999999999999999999986666666666321 23467999999999987
No 213
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.16 E-value=3.4e-10 Score=119.04 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
-..++|+|.|++|+|||||+.++....--+ ... -+|.+ ....++.+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEv-----A~Y------------PFTTK~i~vGhfe~~--------------- 213 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEV-----APY------------PFTTKGIHVGHFERG--------------- 213 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCcc-----CCC------------CccccceeEeeeecC---------------
Confidence 368999999999999999999993222111 111 12222 222344443
Q ss_pred CceEEEEEcCCCCcc--------chHHHHHHhh-ccCeEEEEEeCCC--ccchhH-HHHHHHHH-cCCCceEEEEEcCCc
Q 003169 96 NEYLINLIDSPGHVD--------FSSEVTAALR-ITDGALVVVDCIE--GVCVQT-ETVLRQAL-GERIRPVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~d--------f~~e~~~~l~-~~D~ailVvda~~--gv~~~t-~~~l~~~~-~~~~p~ilviNK~D~ 162 (843)
..+|.+|||||.-| .-.+...||+ ..+.+++++|+++ |..... ..+|+... ....|+++|+||+|.
T Consensus 214 -~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 214 -YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred -CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 66999999999765 3345677776 5667789999987 333222 23444443 345688899999997
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 293 ~ 293 (346)
T COG1084 293 A 293 (346)
T ss_pred c
Confidence 6
No 214
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.16 E-value=2.2e-10 Score=113.01 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=76.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+|............. ..|..... ..+... ++....+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~------------t~~~~~~~--~~~~~~-------------~~~~~~l 54 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM------------TTGCDFVV--KEVPVD-------------TDNTVEL 54 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC------------ceEEEEEE--EEEEeC-------------CCCEEEE
Confidence 68999999999999999996432111110000 00111111 111111 1245789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc--CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~--~~~p~ilviNK~D~~ 163 (843)
.++||||+..|.......++.+|++++|+|.++........-|. .... .++|+++++||+|+.
T Consensus 55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999999888888999999999999998754433323332 2222 358999999999986
No 215
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.16 E-value=1.6e-10 Score=117.42 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++...-..... . ..+........+.+ ++....+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~--------------~t~~~~~~~~~~~~--------------~~~~~~~ 52 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNF-I--------------ATVGIDFRNKVVTV--------------DGVKVKL 52 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCc-C--------------CcccceeEEEEEEE--------------CCEEEEE
Confidence 68999999999999999995432111000 0 00111111111112 1235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
+||||||+.+|.......++.+|++|+|+|+.+....+....| ..+. ..++|+++++||+|+.
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 9999999999988888889999999999999875443322222 2222 2367899999999986
No 216
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.16 E-value=1.7e-10 Score=117.94 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++... ... .+.+ .++.......+.+. +..+.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~---------~~~p-----t~~~~~~~~~i~~~--------------~~~~~l 51 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE---------EYIP-----TEHRRLYRPAVVLS--------------GRVYDL 51 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc---------ccCC-----ccccccceeEEEEC--------------CEEEEE
Confidence 68999999999999999995422 111 0000 00101000112222 234788
Q ss_pred EEEcCCCCccch----HH----HHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH------cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFS----SE----VTAALRITDGALVVVDCIEGVCVQTETVLR-QAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~----~e----~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~------~~~~p~ilviNK~D~~ 163 (843)
+||||||+.+|. .+ ...+++.+|++|+|+|++++.+.+....|. ... ..++|++++.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 999999987652 11 345678999999999999865554433332 222 2468999999999986
No 217
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.16 E-value=2.2e-10 Score=116.30 Aligned_cols=112 Identities=14% Similarity=0.237 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+... .......+ . +... ....... +....+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t--~----------~~~~---~~~~~~~--------------~~~~~l 49 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPT--I----------EDSY---RKQVVVD--------------GQPCML 49 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCc--h----------HhhE---EEEEEEC--------------CEEEEE
Confidence 48999999999999999996422 11110110 0 0000 0111111 224678
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH------cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL------GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~------~~~~p~ilviNK~D~~ 163 (843)
+||||||+.+|.......++.+|++|+|+|.++........-| ..+. ..++|++++.||+|+.
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 9999999999999888999999999999999876544432222 2222 1467899999999986
No 218
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.16 E-value=1.7e-10 Score=114.98 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++++... .... +. -|+........+. .++....+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f~~~---------~~-------~t~~~~~~~~~~~------------~~~~~~~l 51 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--FDKN---------YK-------ATIGVDFEMERFE------------ILGVPFSL 51 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCC---------CC-------CceeeEEEEEEEE------------ECCEEEEE
Confidence 58999999999999999995431 1110 00 1221111111111 11235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHcC----CCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE----RIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~~----~~p~ilviNK~D~~ 163 (843)
+|+||||+.+|.......++.+|++++|+|+.+........-|. ...+. ..|+++|.||+|+.
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 99999999999988889999999999999998744443333333 22222 24578999999985
No 219
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.15 E-value=1.9e-10 Score=114.83 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-+|+++|..|+|||||+.+++... ....... |+.... ..+.+ ++...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~--f~~~~~~----------------t~~~~~~~~~~~--------------~~~~~ 50 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS--FPDYHDP----------------TIEDAYKQQARI--------------DNEPA 50 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCCCcCC----------------cccceEEEEEEE--------------CCEEE
Confidence 379999999999999999995421 1110000 111000 01111 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HH-HHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQ-ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~-~~~~~~p~ilviNK~D~~ 163 (843)
.++|+||||..+|......+++.+|++|+|+|.++..+.+...-| .. ....++|+++|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 899999999999998888999999999999999987766664322 22 223468999999999976
No 220
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.15 E-value=1.8e-10 Score=112.58 Aligned_cols=112 Identities=24% Similarity=0.316 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|+.|+|||||+++|+... .... +.+. +-......+.+. +..+.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~---------~~~~------~~~~~~~~~~~~--------------~~~~~~ 49 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEE---------YDPT------IEDSYRKTIVVD--------------GETYTL 49 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcC---------cCCC------hhHeEEEEEEEC--------------CEEEEE
Confidence 58999999999999999996443 1110 0000 001111111221 125789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
+++||||+.++.......++.+|++++|+|..+.-.... ...+.... ..+.|+++++||+|+.
T Consensus 50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 999999999999999999999999999999986433222 23333222 2468899999999987
No 221
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.14 E-value=3.3e-10 Score=113.61 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=77.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|..|+|||||++++....- ..... ..+..+.....+.+..... ......+...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~--~~~~~--------------~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 63 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF--NPKFI--------------TTVGIDFREKRVVYNSSGP----GGTLGRGQRI 63 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCC--------------CccceEEEEEEEEEcCccc----cccccCCCEE
Confidence 46899999999999999999954211 11000 0011111111112210000 0000112457
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc----CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~----~~~p~ilviNK~D~~ 163 (843)
.+.||||||+..|.......++.+|++|+|+|+++.-+.+...-|. .... .+.|++++.||+|+.
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 8999999999999988899999999999999998755444433332 2222 356888999999986
No 222
>PRK11058 GTPase HflX; Provisional
Probab=99.13 E-value=3.1e-10 Score=128.63 Aligned_cols=114 Identities=23% Similarity=0.198 Sum_probs=75.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+..|+++|.+|+|||||+|+|....-.. .| ..+.|++.....+.+. ...
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v----------~~------~~~tTld~~~~~i~l~---------------~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA----------AD------QLFATLDPTLRRIDVA---------------DVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee----------cc------CCCCCcCCceEEEEeC---------------CCC
Confidence 4579999999999999999995432111 11 1123444443344443 133
Q ss_pred EEEEEcCCCCccc--------hHHHHHHhhccCeEEEEEeCCCccchhHH----HHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDF--------SSEVTAALRITDGALVVVDCIEGVCVQTE----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df--------~~e~~~~l~~~D~ailVvda~~gv~~~t~----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.|+||||..+. ...+...++.||++|+|+|+++....... .++..+...++|+++|+||+|+.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 7889999998542 12244556889999999999986543332 33444444578999999999986
No 223
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.13 E-value=3.5e-10 Score=117.60 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=79.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..|+|||||+.+++... .... + +..-|.++. ...+.. ++.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~--f~~~---------~---~~tig~~~~--~~~~~~--------------~~~ 60 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKK---------Y---EPTIGVEVH--PLDFFT--------------NCG 60 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCC--CCCc---------c---CCccceeEE--EEEEEE--------------CCe
Confidence 345689999999999999999985321 1110 0 011111221 111211 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-H--HcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A--LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~--~~~~~p~ilviNK~D~~ 163 (843)
...++||||||+.+|..-....++.+|++|+|+|.++....+...-|.. + ...++|+++|.||+|+.
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 5789999999999998777778899999999999998766655444422 1 13468999999999986
No 224
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.13 E-value=5.9e-10 Score=124.92 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=76.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-.|+++|.+|+|||||+++|....-.+ ...+ +.|.......+.+. ...
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~v-s~~p---------------~TT~~p~~Giv~~~---------------~~~ 207 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKV-ADYP---------------FTTLVPNLGVVRVD---------------DER 207 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccc-cCCC---------------CCccCcEEEEEEeC---------------CCc
Confidence 4479999999999999999995432211 1111 23444444444443 134
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC----ccchhHHHHHHHHHc-----CCCceEEEEEcCCc
Q 003169 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE----GVCVQTETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~----gv~~~t~~~l~~~~~-----~~~p~ilviNK~D~ 162 (843)
.|.|+||||..+ +...+.+++..+|++++|||+.. ....+...+++.+.. .+.|.++++||+|+
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl 287 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDL 287 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc
Confidence 699999999764 44567778999999999999872 122223344444443 35899999999998
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 288 ~ 288 (390)
T PRK12298 288 L 288 (390)
T ss_pred C
Confidence 6
No 225
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.12 E-value=4.5e-10 Score=113.51 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeE-EEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++|+...- ... +. -|+..... .+... ++....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~--~~~---------~~-------~t~~~~~~~~i~~~-------------~~~~~~ 50 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--PEE---------YV-------PTVFENYVTNIQGP-------------NGKIIE 50 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--CCC---------CC-------CeeeeeeEEEEEec-------------CCcEEE
Confidence 799999999999999999954321 110 00 01111111 11110 123567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH---cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~---~~~~p~ilviNK~D~~ 163 (843)
+.|+||||+.+|.......++.+|++|+|+|+++..+.+.. ..|.... ..++|+++++||.|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 89999999999988777788999999999999976554443 2343221 2468999999999986
No 226
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.12 E-value=6.9e-10 Score=121.87 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=75.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-+-.|+++|.+|+|||||+++|....-.+. ++ ...|.......+.+. ..
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va----------~y------~fTT~~p~ig~v~~~---------------~~ 204 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIA----------DY------PFTTLVPNLGVVRVD---------------DG 204 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCcccc----------CC------CCCccCCEEEEEEeC---------------Cc
Confidence 356899999999999999999954321111 11 012333333334443 13
Q ss_pred eEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCc---cchhHHHHH-HHHHc-----CCCceEEEEEcCC
Q 003169 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCVQTETVL-RQALG-----ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~~~t~~~l-~~~~~-----~~~p~ilviNK~D 161 (843)
..+.|+||||..+ +.....+.+..+|++++|+|+++. ...+....| +.+.. .++|.++|+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 7899999999863 344566777889999999999864 122222222 22222 3679999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 285 L~ 286 (329)
T TIGR02729 285 LL 286 (329)
T ss_pred CC
Confidence 87
No 227
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.12 E-value=3.6e-10 Score=111.37 Aligned_cols=111 Identities=21% Similarity=0.254 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+.+++.. ........ |+. .....+.. ++....
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~--~~~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 50 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSG--TFIEKYDP----------------TIEDFYRKEIEV--------------DSSPSV 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC--CCCCCCCC----------------chhheEEEEEEE--------------CCEEEE
Confidence 7999999999999999998542 22111000 100 00011111 123567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH----cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~----~~~~p~ilviNK~D~~ 163 (843)
++|+||||+..|.......++.+|++++|+|.++..+.+...-| .... ..++|+++++||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 51 LEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred EEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 88999999999988888889999999999999885543333222 2222 2468999999999986
No 228
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=2.8e-10 Score=108.83 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=77.5
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEE
Q 003169 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||+++|......... +..|. ......... ....+..+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~-----------------~~~t~-~~~~~~~~~------------~~~~~~~~~l~ 50 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE-----------------YETTI-IDFYSKTIE------------VDGKKVKLQIW 50 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc-----------------cccch-hheeeEEEE------------ECCEEEEEEEE
Confidence 5899999999999999654431000 01111 111111111 01126789999
Q ss_pred cCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-----HHHHcCCCceEEEEEcCCcc
Q 003169 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 104 DTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-----~~~~~~~~p~ilviNK~D~~ 163 (843)
||||+.++.......++.+|++++|+|+..+........| ......++|+++++||+|+.
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 9999999998888899999999999999987766665543 33445678999999999987
No 229
>PLN03110 Rab GTPase; Provisional
Probab=99.11 E-value=4.5e-10 Score=116.56 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=79.7
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+...+|+++|+.|+|||||+++|+...-.. +....+.++.....+.+. +.
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~----------------~~~~t~g~~~~~~~v~~~--------------~~ 59 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCL----------------ESKSTIGVEFATRTLQVE--------------GK 59 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCceeEEEEEEEEEEC--------------CE
Confidence 345799999999999999999995432110 000111111111122221 23
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH---cCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~---~~~~p~ilviNK~D~~ 163 (843)
...++||||||+..|.......++.+|++|+|+|..+....+...-| ..+. ..++|++++.||+|+.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 56899999999999999888999999999999999876554443333 2222 2468999999999975
No 230
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.11 E-value=3.9e-10 Score=115.28 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=77.0
Q ss_pred EeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEEc
Q 003169 25 IAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLID 104 (843)
Q Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liD 104 (843)
+|..++|||||+.+++.. .... +...|+........+. .+++...++|||
T Consensus 1 vG~~~vGKTsLi~r~~~~--~f~~----------------~~~~Tig~~~~~~~~~------------~~~~~~~l~iwD 50 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG--EFEK----------------KYVATLGVEVHPLVFH------------TNRGPIRFNVWD 50 (200)
T ss_pred CCCCCCCHHHHHHHHhcC--CCCC----------------CCCCceeEEEEEEEEE------------ECCEEEEEEEEE
Confidence 589999999999999532 1111 0111332222122221 122467899999
Q ss_pred CCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HHc--CCCceEEEEEcCCcc
Q 003169 105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 105 TPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~~--~~~p~ilviNK~D~~ 163 (843)
|||+.+|.......++.+|++|+|+|.++..+.+....|.. +.+ .++|+++|.||+|+.
T Consensus 51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 99999999989999999999999999999877766555544 322 468999999999975
No 231
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.11 E-value=5.5e-10 Score=115.79 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=75.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|+...- . ++. -|+........+. .+.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f--~----------~~~-------~Tig~~~~~~~~~----------------~~~l 46 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF--K----------DTV-------STVGGAFYLKQWG----------------PYNI 46 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC--C----------CCC-------CccceEEEEEEee----------------EEEE
Confidence 689999999999999999954221 0 000 1222111112232 6789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHH-HHHHH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~-l~~~~---~~~~p~ilviNK~D~~ 163 (843)
+||||||+..|.......++.+|++|+|+|+++.-+...... |..+. ..++|+|+|.||+|+.
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~ 113 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLT 113 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 999999999999888888999999999999998654444332 22222 2457899999999986
No 232
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.11 E-value=4.7e-10 Score=116.29 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+++|+... ... .+ ..-++.+.....+.+. +.....+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~~~---------~~-----~~T~~~d~~~~~i~~~-------------~~~~~~~ 52 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--FGK---------SY-----KQTIGLDFFSKRVTLP-------------GNLNVTL 52 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--CCC---------CC-----CCceeEEEEEEEEEeC-------------CCCEEEE
Confidence 68999999999999999995421 100 00 0011111111112221 1135789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc------CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~------~~~p~ilviNK~D~~ 163 (843)
+|+||||+..|.......++.+|++|+|+|+++.-......-| ..+.. .+.|+++|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 9999999999988888889999999999999875444433333 22222 234678899999986
No 233
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.11 E-value=2.9e-10 Score=113.27 Aligned_cols=109 Identities=23% Similarity=0.220 Sum_probs=68.8
Q ss_pred EEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEE
Q 003169 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLI 103 (843)
Q Consensus 24 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 103 (843)
++|+.|+|||||+++|....-.+. ...+.|+......+.+. .+..++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~---------------~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA----------------NYPFTTLEPNLGVVEVP---------------DGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc----------------CCCceeecCcceEEEcC---------------CCCeEEEE
Confidence 589999999999999954321000 01122333332233331 15689999
Q ss_pred cCCCCcc-------chHHHHHHhhccCeEEEEEeCCCcc------chhH-HHHHHHHH----------cCCCceEEEEEc
Q 003169 104 DSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV------CVQT-ETVLRQAL----------GERIRPVLTVNK 159 (843)
Q Consensus 104 DTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv------~~~t-~~~l~~~~----------~~~~p~ilviNK 159 (843)
||||+.+ +.......++.+|++++|+|+.+.. .... ..++.... ..++|+++++||
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 129 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNK 129 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEc
Confidence 9999843 2334566788899999999998762 2212 11222221 146899999999
Q ss_pred CCcc
Q 003169 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|+.
T Consensus 130 ~Dl~ 133 (176)
T cd01881 130 IDLD 133 (176)
T ss_pred hhcC
Confidence 9987
No 234
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=7.5e-10 Score=111.68 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..++|||||+.++.. +... ++ +...|..+ ..+.+. +..
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~--~~~~----------~~---~~T~~~~~----~~~~~~----------------~~~ 62 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKL--GEVV----------TT---IPTIGFNV----ETVEYK----------------NLK 62 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhc--CCcc----------cc---CCccccce----EEEEEC----------------CEE
Confidence 5799999999999999999832 1110 11 01112211 122232 688
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHHHHHc----CCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
++++||||+..|.......++.+|++|+|+|+++.-... ....+..... .+.|+++++||.|+.
T Consensus 63 ~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 63 FTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 999999999999988888999999999999998632211 1222332221 357889999999987
No 235
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.10 E-value=7.4e-10 Score=112.28 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|+++|..++|||||+.++.... ... +....++.+....++.. ++.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~--~~~--------------~~~~t~~~~~~~~~i~~--------------~~~ 53 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGS--TES--------------PYGYNMGIDYKTTTILL--------------DGR 53 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CCCCcceeEEEEEEEEE--------------CCE
Confidence 345789999999999999999995321 111 00001111111111222 123
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH--cCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
...++|+||||+.+|.......++.+|++|||+|.++.-+.+...-|. ++. ..+.|+||+.||+|+.
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 578999999999999988888889999999999999866555544442 222 2467899999999986
No 236
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.10 E-value=2.5e-10 Score=113.80 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=74.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|+.++|||||+.+++...- ...... |+... ...+.+ ++..+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~----------------t~~~~~~~~~~~--------------~~~~~~ 49 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVP----------------TVFDHYAVSVTV--------------GGKQYL 49 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCC----------------ceeeeeEEEEEE--------------CCEEEE
Confidence 699999999999999999954321 110000 11100 011112 123567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHH-HH--HcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLR-QA--LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~-~~--~~~~~p~ilviNK~D~~ 163 (843)
+++|||||+.+|.......++.+|++++|+|..+.-..+... .|. .. ...++|+++++||+|+.
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 899999999999887777889999999999998765443331 222 22 14578999999999986
No 237
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.10 E-value=6.6e-10 Score=112.95 Aligned_cols=112 Identities=14% Similarity=0.176 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeE--EEEEeechhhhhccccccCCCce
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI--SLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+|+++|..++|||||+++|+...-.... +. -|+..... .+.. ++...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~----------~~-------~t~~~~~~~~~~~~--------------~~~~~ 50 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP----------YQ-------NTIGAAFVAKRMVV--------------GERVV 50 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC----------cc-------cceeeEEEEEEEEE--------------CCEEE
Confidence 6999999999999999999643211000 00 01111111 1122 12356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
.+++|||||..+|.......++.+|++++|+|.++....+....| ..+. ..+.|+++|+||+|+.
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccc
Confidence 788999999998877777788899999999999875444332223 2222 2368999999999976
No 238
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.09 E-value=5.1e-10 Score=112.12 Aligned_cols=112 Identities=22% Similarity=0.301 Sum_probs=79.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+|+++|..|+|||||+++|.. +.... .....|..+ ..+.+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~-------------~~pT~g~~~----~~i~~~---------------- 56 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE-------------TIPTIGFNI----EEIKYK---------------- 56 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE-------------EEEESSEEE----EEEEET----------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc-------------cCccccccc----ceeeeC----------------
Confidence 5667899999999999999999932 11111 111122222 334443
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-hhHHHHHHHHH----cCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTETVLRQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~~t~~~l~~~~----~~~~p~ilviNK~D~~ 163 (843)
++.++++|.+|+..+...+...++.+|++|+|||+.+.-. ......+..+. ..++|+++++||+|+.
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred cEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccccc
Confidence 7899999999999988888889999999999999997432 22333333332 2467899999999998
No 239
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.08 E-value=2.2e-09 Score=115.29 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=78.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||+++|+.|+|||||+++|+...-.... +. .+....+..+.+++......+... +...+
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~---~~---~~~~~~~~~~T~~i~~~~~~i~~~--------------g~~~~ 64 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSD---YP---PDPAEEHIDKTVEIKSSKAEIEEN--------------GVKLK 64 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCcccc---CC---CCccccccCCceEEEEEEEEEEEC--------------CEEEE
Confidence 48999999999999999999554322111 00 000111122222333333333221 22468
Q ss_pred EEEEcCCCCccchH---------------------HHHHHhh-------ccCeEEEEEeCCC-ccchhHHHHHHHHHcCC
Q 003169 100 INLIDSPGHVDFSS---------------------EVTAALR-------ITDGALVVVDCIE-GVCVQTETVLRQALGER 150 (843)
Q Consensus 100 i~liDTPGh~df~~---------------------e~~~~l~-------~~D~ailVvda~~-gv~~~t~~~l~~~~~~~ 150 (843)
+++|||||..|+.. +.....+ .+|++++++++.. ++......+++.+.. +
T Consensus 65 l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~ 143 (276)
T cd01850 65 LTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-R 143 (276)
T ss_pred EEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-c
Confidence 99999999877642 1111112 4788999999874 777777888888764 7
Q ss_pred CceEEEEEcCCcc
Q 003169 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNK~D~~ 163 (843)
+|+++|+||+|+.
T Consensus 144 v~vi~VinK~D~l 156 (276)
T cd01850 144 VNIIPVIAKADTL 156 (276)
T ss_pred CCEEEEEECCCcC
Confidence 9999999999986
No 240
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=7.9e-10 Score=121.51 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=77.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+..|+++|.+|+|||||+++|....-.+ .++ .+.|+......+.+. ...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~v----------a~y------pfTT~~p~~G~v~~~---------------~~~ 206 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKI----------ADY------PFTTLHPNLGVVRVD---------------DYK 206 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCcc----------CCC------CCceeCceEEEEEeC---------------CCc
Confidence 5689999999999999999995432111 111 123555554455553 256
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc-----CCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~-----~~~p~ilviNK~D~~ 163 (843)
.+.++||||..+ +.....+.+..+|++|+|+|+++.-..+....| ..+.. .++|.++|+||+|+.
T Consensus 207 ~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 207 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred EEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 799999999753 445667778889999999999864333333333 23322 367999999999987
No 241
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.08 E-value=5.3e-10 Score=112.02 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=76.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+.++++.. .... +.+ |+.... ..+.. ++..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~~---------~~p-------t~~~~~~~~~~~--------------~~~~~ 49 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPSE---------YVP-------TVFDNYAVTVMI--------------GGEPY 49 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC---------CCC-------ceeeeeEEEEEE--------------CCEEE
Confidence 479999999999999999995421 1110 000 111110 11122 12357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHH-HH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~-~~--~~~~p~ilviNK~D~~ 163 (843)
.++||||||+.+|.......++.+|++|+|+|.++.-..+.. ..|.. .. ..++|+|++.||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 118 (175)
T ss_pred EEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 899999999999987777788999999999999886555443 23432 22 2367999999999986
No 242
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.08 E-value=3.9e-10 Score=111.85 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=73.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...-. ..... . ..........+ .+....+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~--~-------------~~~~~~~~~~~--------------~~~~~~l 50 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP--TEYVP--T-------------VFDNYSATVTV--------------DGKQVNL 50 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--c-------------eeeeeEEEEEE--------------CCEEEEE
Confidence 6899999999999999999554210 00000 0 00000111111 1236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHH--cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
.++||||+.+|.......++.+|++++|+|+.+....+.. ..| .... ..++|+++++||+|+.
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 9999999998876666677899999999999875443332 222 2222 2358999999999987
No 243
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.07 E-value=2.8e-10 Score=106.05 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=71.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+|+|+.|+|||||+++|+..... +....+...+.++......... ....+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~ 52 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDG----------------DRQSL 52 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETT----------------EEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecC----------------CceEE
Confidence 5899999999999999999665432 0000011112233222111111 24458
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHH---HHHH--cCCCceEEEEEcCC
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL---RQAL--GERIRPVLTVNKMD 161 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l---~~~~--~~~~p~ilviNK~D 161 (843)
.++|++|...+.......+..+|++++|+|+++.-..+- ..++ .... ..++|++++.||.|
T Consensus 53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999998887766666999999999999997543332 2221 2222 24589999999998
No 244
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.07 E-value=8.3e-10 Score=114.07 Aligned_cols=115 Identities=21% Similarity=0.198 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..|+|||||+++|+... .... . ...++++.....+.+. ++....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~~--~------------~~ti~~d~~~~~i~~~-------------~~~~~~ 53 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAEV--S------------DPTVGVDFFSRLIEIE-------------PGVRIK 53 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCC--C------------CceeceEEEEEEEEEC-------------CCCEEE
Confidence 589999999999999999996432 1110 0 0011111111111121 123568
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHH----cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~----~~~~p~ilviNK~D~~ 163 (843)
++++||||+..|.......++.+|++|+|+|.++.-......-| ..+. ....|++++.||+|+.
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 54 LQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 99999999999988888899999999999999875433332222 2222 1235677899999986
No 245
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.06 E-value=6.5e-10 Score=105.46 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=70.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+++|.++|++++|||||+.+|........+ |- .+.|
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~~~~~~K--------------------Tq-----~i~~------------------- 36 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGEEIRYKK--------------------TQ-----AIEY------------------- 36 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCCCCCcCc--------------------cc-----eeEe-------------------
Confidence 368999999999999999999332111100 11 1122
Q ss_pred EEEEEcCCC----CccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPG----h~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.=++||||| +..|..........||.+++|.||++..+.-.-. .+...+.|+|-||||+|+.
T Consensus 37 ~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 37 YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASMFNKPVIGVITKIDLP 102 (143)
T ss_pred cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcccCCCEEEEEECccCc
Confidence 125699999 5678888888899999999999999865443332 3345678999999999987
No 246
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.06 E-value=1.7e-09 Score=109.14 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=73.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+++... ... ++.+ .-|..... ..+.. ++....+
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f~~---------~~~~---T~g~~~~~--~~i~~--------------~~~~~~l 51 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--FDE---------DYIQ---TLGVNFME--KTISI--------------RGTEITF 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCC---------CCCC---ccceEEEE--EEEEE--------------CCEEEEE
Confidence 68999999999999999995431 110 0000 01111111 11122 1235789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc--CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~--~~~p~ilviNK~D~~ 163 (843)
++|||+|+..|.......++.+|++++|+|+++..+.+...-| ..+.. ...++|++.||+|+.
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~ 117 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLF 117 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 9999999999998888889999999999999876554443333 22322 122347899999985
No 247
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.06 E-value=5.9e-10 Score=113.14 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeE-EEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
|+|+++|..|+|||||+.+++... .... +. -|+..... .+.. ++...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~--~~~~---------~~-------~t~~~~~~~~i~~--------------~~~~~ 48 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY--FPQV---------YE-------PTVFENYVHDIFV--------------DGLHI 48 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC--CCCc---------cC-------CcceeeeEEEEEE--------------CCEEE
Confidence 579999999999999999995421 1110 00 01111100 0111 12357
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HH-HHHH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
.++|+||||+.+|..-....++.+|++|+|+|.++....+... .| ..+. ..+.|+++|.||+|+.
T Consensus 49 ~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~ 117 (189)
T cd04134 49 ELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLR 117 (189)
T ss_pred EEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 8999999999998776667788999999999998765554432 23 2222 2367899999999987
No 248
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.06 E-value=5.9e-10 Score=115.33 Aligned_cols=116 Identities=23% Similarity=0.227 Sum_probs=80.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+..+||++|.+|+|||||+|.|+..--........ .|.......+.- .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~---------------TTr~~ilgi~ts----------------~ 118 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH---------------TTRHRILGIITS----------------G 118 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc---------------ceeeeeeEEEec----------------C
Confidence 457799999999999999999996543222221111 122222222222 3
Q ss_pred ceEEEEEcCCCCc------------cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc-CCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHV------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG-ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~------------df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~-~~~p~ilviNK~D~~ 163 (843)
+.++.|.||||.+ .|......|+..||.+++|+|+.+.-.....++++.+.+ .++|-|+|+||+|..
T Consensus 119 eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~ 198 (379)
T KOG1423|consen 119 ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKL 198 (379)
T ss_pred ceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcc
Confidence 7899999999954 355578889999999999999997333333456665544 468999999999987
No 249
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.05 E-value=1e-09 Score=109.32 Aligned_cols=115 Identities=19% Similarity=0.099 Sum_probs=76.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccc-cccCCceEeecCccccccccceeeeee--EEEEEeechhhhhcccccc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTG--ISLYYEMTDAALKSYRGER 93 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~-~~~~g~~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~~~~ 93 (843)
.+..+|+++|..|+|||||+.+++... .. . ++.+ |+.... ..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~--f~~~---------~~~~-------T~~~~~~~~~~~~~------------- 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRS--FSLN---------AYSP-------TIKPRYAVNTVEVY------------- 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCC--CCcc---------cCCC-------ccCcceEEEEEEEC-------------
Confidence 457899999999999999999995321 11 1 0000 111110 112221
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHH-cCCCceEEEEEcCCcc
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQAL-GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~-~~~~p~ilviNK~D~~ 163 (843)
+....+.++||+|...|.......++.+|++++|+|+++.-..+.. ..++... ..++|+++++||+|+.
T Consensus 51 -~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 51 -GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred -CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccc
Confidence 2246788999999999887777788999999999999875332222 2333331 2368999999999986
No 250
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=6.7e-11 Score=127.28 Aligned_cols=131 Identities=32% Similarity=0.399 Sum_probs=103.7
Q ss_pred cccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccC------------Cc---eEeecCccccccccceeeeeeEEEE
Q 003169 14 DFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVA------------GD---VRMTDTRQDEAERGITIKSTGISLY 78 (843)
Q Consensus 14 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~------------g~---~~~~D~~~~E~~rgiTi~~~~~~~~ 78 (843)
.+....+||+++||.++||||++. +.+|.++.+.. |. .+.+|....|++||++|+.+...+.
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~ 78 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 78 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccc
Confidence 334455799999999999999998 55666655311 11 4689999999999988765543332
Q ss_pred EeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-------cchhHHHHHHHHHcCCC
Q 003169 79 YEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-------VCVQTETVLRQALGERI 151 (843)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-------v~~~t~~~l~~~~~~~~ 151 (843)
...+.+++||.|||.||...+..+.+.+|.|+++|.+.-| ...||+++...+...++
T Consensus 79 ----------------t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv 142 (391)
T KOG0052|consen 79 ----------------TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 142 (391)
T ss_pred ----------------ceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccc
Confidence 2478999999999999999999999999999999999332 35799999888888887
Q ss_pred -ceEEEEEcCCcc
Q 003169 152 -RPVLTVNKMDRC 163 (843)
Q Consensus 152 -p~ilviNK~D~~ 163 (843)
++++-+||||-.
T Consensus 143 ~qliv~v~k~D~~ 155 (391)
T KOG0052|consen 143 KQLIVGVNKMDST 155 (391)
T ss_pred eeeeEEeeccccc
Confidence 477899999965
No 251
>PLN03108 Rab family protein; Provisional
Probab=99.05 E-value=1.5e-09 Score=112.14 Aligned_cols=116 Identities=18% Similarity=0.166 Sum_probs=77.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|+.++|||||+++|+...-... +.+ .-|.+.... .+.+. +..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~-----------~~~---ti~~~~~~~--~i~~~--------------~~~ 54 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------HDL---TIGVEFGAR--MITID--------------NKP 54 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCC---CccceEEEE--EEEEC--------------CEE
Confidence 356899999999999999999954321100 000 001111111 12221 235
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH---cCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~---~~~~p~ilviNK~D~~ 163 (843)
..+++|||||+.+|.......++.+|++|+|+|+++....+...-|.. .. ..+.|++++.||+|+.
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 678999999999999888889999999999999987554444333322 21 2367899999999986
No 252
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.05 E-value=1.3e-09 Score=108.72 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=73.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCceEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
|+|+|..|+|||||+++++... ....... |+.... ..+.. ++....+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~~~~~----------------~~~~~~~~~~~~--------------~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPEDYVP----------------TVFENYSADVEV--------------DGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCCCCCC----------------cEEeeeeEEEEE--------------CCEEEEE
Confidence 5899999999999999996532 1110000 111000 11111 1235679
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHH-HHH--cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
.++||||+.+|.......++.+|++|+|+|.++.-..+.. ..|. ... ..++|+++++||+|+.
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 9999999999988777788999999999999875433332 2232 222 2378999999999987
No 253
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.05 E-value=2.1e-09 Score=108.31 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=77.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+|+++|..++|||||+.+++... ... ++.+ |+.... ..+.. +++.
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~~---------~~~p-------T~~~~~~~~~~~--------------~~~~ 52 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPE---------NYVP-------TVFENYTASFEI--------------DTQR 52 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCC---------ccCC-------ceeeeeEEEEEE--------------CCEE
Confidence 3579999999999999999995432 111 0000 111110 01111 2236
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHH-HHHc--CCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~-~~~~--~~~p~ilviNK~D~~ 163 (843)
..+.||||+|...|.......++.+|++|+|+|.++..+.+.. ..|. .+.. .+.|++||.||+|+.
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 7899999999999988888889999999999999886555553 3443 2222 367899999999975
No 254
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.05 E-value=9.9e-10 Score=111.27 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=75.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+... ... .+ ...-|.+... ..+... +....+
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~~~---------~~---~~t~~~~~~~--~~~~~~--------------~~~~~~ 51 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--FSE---------ST---KSTIGVDFKI--KTVYIE--------------NKIIKL 51 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCC---------CC---CCceeeEEEE--EEEEEC--------------CEEEEE
Confidence 69999999999999999995321 110 00 0011111111 112221 235678
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~---~~~~p~ilviNK~D~~ 163 (843)
.++||||+.+|.......++.+|++|+|+|+++.-.......|. ... ....|+++++||+|+.
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 99999999999988999999999999999998755444333332 222 2356888999999976
No 255
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=1.9e-09 Score=108.36 Aligned_cols=111 Identities=15% Similarity=0.149 Sum_probs=75.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..++|||||+.+++... ... ++.+ |+.... ..+.. +++...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f~~---------~~~~-------t~~~~~~~~~~~--------------~~~~~~ 50 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--YPE---------TYVP-------TVFENYTASFEI--------------DEQRIE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCC---------CcCC-------ceEEEEEEEEEE--------------CCEEEE
Confidence 69999999999999999995432 111 0000 111110 01111 223678
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHH-HH--cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~-~~--~~~~p~ilviNK~D~~ 163 (843)
++||||||+..|.......++.+|++|+|+|.++..+.+. ..-|.. +. ..+.|+++|.||+|+.
T Consensus 51 l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 51 LSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 9999999999998777788899999999999988665554 234432 22 2367899999999985
No 256
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.03 E-value=1.2e-09 Score=109.22 Aligned_cols=111 Identities=17% Similarity=0.149 Sum_probs=75.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+.+++... .... +. .|+... ...+.. +++...
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~--f~~~---------~~-------~t~~~~~~~~~~~--------------~~~~~~ 50 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNA--FPGE---------YI-------PTVFDNYSANVMV--------------DGKPVN 50 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCc---------CC-------CcceeeeEEEEEE--------------CCEEEE
Confidence 79999999999999999995421 1110 00 011100 011111 223578
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHH-HH--cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~-~~--~~~~p~ilviNK~D~~ 163 (843)
++|+||||..+|.......++.+|++|+|+|.++.-+.+.. ..|.. .. ..++|++++.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 118 (174)
T cd01871 51 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhc
Confidence 99999999999988888889999999999999985554443 23422 22 2367999999999986
No 257
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.03 E-value=2.5e-09 Score=121.94 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=75.3
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-+..|+++|.+|+|||||+++|....-.+ .|+ .+.|+......+.+. +
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI----------ady------pfTTl~P~lGvv~~~----------------~ 205 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKI----------ADY------PFTTLVPNLGVVQAG----------------D 205 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccc----------ccc------CcccccceEEEEEEC----------------C
Confidence 35789999999999999999995432111 111 134555555555554 6
Q ss_pred eEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCc---cch--hHH----HHHHHH----------HcCCC
Q 003169 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VCV--QTE----TVLRQA----------LGERI 151 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~~--~t~----~~l~~~----------~~~~~ 151 (843)
..+.|+||||..+ ...+..+.+..||++|+|||+++- -.+ +.. ++..+. ...++
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 7899999999753 233456677889999999999741 111 111 121221 12468
Q ss_pred ceEEEEEcCCcc
Q 003169 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNK~D~~ 163 (843)
|.|+|+||+|++
T Consensus 286 P~IVVlNKiDL~ 297 (500)
T PRK12296 286 PRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECccch
Confidence 999999999987
No 258
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.03 E-value=1.6e-09 Score=110.21 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=77.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..++|||||+.++++.. .... + --|+.... ...+. .+++...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~~~---------~-------~~t~~~~~-~~~~~------------~~~~~~~ 52 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FPKE---------Y-------IPTVFDNY-SAQTA------------VDGRTVS 52 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CCcC---------C-------CCceEeee-EEEEE------------ECCEEEE
Confidence 479999999999999999995421 1110 0 01221111 00111 1234678
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHH-HH--cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~-~~--~~~~p~ilviNK~D~~ 163 (843)
++|+||||+..|.......++.+|++|+|+|.++..+.+... .|.. .. ..++|++++.||.|+.
T Consensus 53 l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 120 (191)
T cd01875 53 LNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR 120 (191)
T ss_pred EEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhh
Confidence 999999999999988888889999999999999866555543 3432 21 2468999999999986
No 259
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.03 E-value=1.5e-09 Score=112.67 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=77.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..++|||||+.+++... ... ++.+ |+.... ..+.. +++..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f~~---------~y~p-------Ti~~~~~~~~~~--------------~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--YPG---------SYVP-------TVFENYTASFEI--------------DKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC---------ccCC-------ccccceEEEEEE--------------CCEEE
Confidence 379999999999999999995421 111 1111 111110 11222 23467
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHH---HcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~---~~~~~p~ilviNK~D~~ 163 (843)
.++||||+|...|......+++.+|++|+|+|.++.-..+.. ..|... ...+.|+|||.||+|+.
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 899999999999988888889999999999999986544443 334321 12467999999999986
No 260
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.03 E-value=1.3e-09 Score=109.26 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|..++|||+|+.+++.. ..... +. -|+.... ..... .+++..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~--~f~~~---------~~-------~Ti~~~~-~~~~~------------~~~~~v~ 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN--KFPTD---------YI-------PTVFDNF-SANVS------------VDGNTVN 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcC--CCCCC---------CC-------Ccceeee-EEEEE------------ECCEEEE
Confidence 37999999999999999999532 11110 00 0221111 00111 1224678
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHH-HHHH--cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
++|+||+|+.+|.......++.+|++|+|+|.++.-+.+.. ..| +.+. ..++|+++|.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 51 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 99999999999998888899999999999999976655543 333 2222 2467899999999986
No 261
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.02 E-value=2.4e-09 Score=109.55 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=78.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+++... .... . ...-|.++... .+.+.. ....++.+.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~--f~~~-~-----------~~Tig~~~~~k--~~~~~~---------~~~~~~~~~l 56 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ--VLGR-P-----------SWTVGCSVDVK--HHTYKE---------GTPEEKTFFV 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCC-C-----------CcceeeeEEEE--EEEEcC---------CCCCCcEEEE
Confidence 68999999999999999995321 1100 0 00011112111 122210 0012346789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-HH----------------------cCCCceEEEE
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL----------------------GERIRPVLTV 157 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~~----------------------~~~~p~ilvi 157 (843)
+||||+|+.+|.......++.+|++|+|+|.++.-+.+...-|.. +. ..++|+++|.
T Consensus 57 ~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVG 136 (202)
T cd04102 57 ELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIG 136 (202)
T ss_pred EEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEE
Confidence 999999999998888888999999999999998766555544532 21 1357999999
Q ss_pred EcCCcc
Q 003169 158 NKMDRC 163 (843)
Q Consensus 158 NK~D~~ 163 (843)
||+|+.
T Consensus 137 nK~Dl~ 142 (202)
T cd04102 137 TKLDQI 142 (202)
T ss_pred ECccch
Confidence 999986
No 262
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.01 E-value=5.3e-09 Score=102.76 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=73.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
|+++|+.|+|||||++.|......... . ...+.|.... .+.+ +..+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~--~------------~~~~~t~~~~--~~~~-----------------~~~~~ 48 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLART--S------------KTPGKTQLIN--FFNV-----------------NDKFR 48 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeee--c------------CCCCcceeEE--EEEc-----------------cCeEE
Confidence 799999999999999999532111000 1 1122232211 1122 23789
Q ss_pred EEcCCCCccc----------hHHHHHHh---hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 102 LIDSPGHVDF----------SSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 102 liDTPGh~df----------~~e~~~~l---~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
++||||+.+. ...+...+ ..++++++|+|...........+++.+...+.|+++++||+|+.
T Consensus 49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 9999998653 22222233 34678999999998777777777788888889999999999976
No 263
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.00 E-value=1.3e-09 Score=108.74 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=72.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeee-eEEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKST-GISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
++|+++|+.++|||||+.+++...- ... +.+ |+... ...+.+. ++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~---------~~~-------t~~~~~~~~~~~~--------------~~~~ 49 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEV---------YVP-------TVFENYVADIEVD--------------GKQV 49 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCC---------CCC-------ccccceEEEEEEC--------------CEEE
Confidence 4799999999999999999954321 100 000 11100 0112221 2356
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHH-HHH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|.......++.+|++++|+|..+....... ..|. ... ..++|+++++||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 118 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcc
Confidence 789999999998877666778899999999999864322222 2222 222 2478999999999976
No 264
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.00 E-value=1.8e-09 Score=114.09 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceee-eeeEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIK-STGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|..|+|||||+++++... ....... |+. .....+.. ++..+.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~--f~~~y~p----------------Ti~d~~~k~~~i--------------~~~~~~ 49 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR--FEEQYTP----------------TIEDFHRKLYSI--------------RGEVYQ 49 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC--CCCCCCC----------------ChhHhEEEEEEE--------------CCEEEE
Confidence 68999999999999999996421 1110001 111 00111111 123578
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHHHc------------CCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG------------ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~~~------------~~~p~ilviNK~D~~ 163 (843)
++||||+|+.+|......+++.+|++|+|+|.++....+... .+.++.. .++|+|+++||+|+.
T Consensus 50 l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 50 LDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 999999999999877777788999999999999765443322 2222211 367999999999986
No 265
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.99 E-value=1.6e-09 Score=127.95 Aligned_cols=104 Identities=24% Similarity=0.235 Sum_probs=74.3
Q ss_pred eCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEEcC
Q 003169 26 AHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDS 105 (843)
Q Consensus 26 G~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDT 105 (843)
|.+|+|||||+|+|....- . . ....|+|++.....+.++ ++.++++||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~---~--v-----------~n~pG~Tv~~~~~~i~~~----------------~~~i~lvDt 48 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ---T--V-----------GNWPGVTVEKKEGKLGFQ----------------GEDIEIVDL 48 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC---e--e-----------cCCCCeEEEEEEEEEEEC----------------CeEEEEEEC
Confidence 7899999999999943211 0 1 113477877766666664 678999999
Q ss_pred CCCccchHH-----HHH-H--hhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 106 PGHVDFSSE-----VTA-A--LRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df~~e-----~~~-~--l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
||+.+|... +.+ . .+.+|++++|+|+++. ........+..+.++|+++++||+|+.
T Consensus 49 PG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 49 PGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred CCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 999887542 222 2 2478999999999873 223344456667889999999999986
No 266
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.99 E-value=3.1e-09 Score=110.92 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..++|||+|+.+++... .... +.+ |+.... ..+.. ++...
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F~~~---------y~p-------Ti~~~~~~~i~~--------------~~~~v 61 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--YPET---------YVP-------TVFENYTAGLET--------------EEQRV 61 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--CCCC---------cCC-------ceeeeeEEEEEE--------------CCEEE
Confidence 478999999999999999985321 1110 000 111110 01111 22467
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHHHH-HH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQ-AL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l~~-~~--~~~~p~ilviNK~D~~ 163 (843)
.++||||+|..+|.......++.+|++|+|+|.++.-+.+. ...|.. +. ..+.|+|+|.||+|+.
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 89999999999998888888999999999999998666554 234432 22 2367889999999975
No 267
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.99 E-value=1.4e-09 Score=108.62 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+++++|..|+|||||+.+++... ....... + ..+.-...+.. ++....+
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~--t-------------~~~~~~~~~~~--------------~~~~~~~ 50 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG--YPTEYVP--T-------------AFDNFSVVVLV--------------DGKPVRL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CCCCCCC--c-------------eeeeeeEEEEE--------------CCEEEEE
Confidence 68999999999999999985421 1110010 0 00000011111 1235688
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH--HHHHHHHc--CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~--~~l~~~~~--~~~p~ilviNK~D~~ 163 (843)
.+|||||+.+|......+++.+|++|+|+|.++.-..+.. ..+..... .+.|++++.||+|+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhc
Confidence 9999999999887777788999999999999976544332 22333332 368899999999986
No 268
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.98 E-value=5.4e-09 Score=117.82 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=74.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+.-|+++|.+|+|||||+++|....-.+.. .+ +.|.......+.+. .+.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-yp---------------fTTl~PnlG~v~~~---------------~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-YH---------------FTTLVPNLGVVETD---------------DGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-CC---------------cceeceEEEEEEEe---------------CCc
Confidence 458999999999999999999543221111 11 22444443334442 256
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCc--cch-hH-HHHHHHHHc-----CCCceEEEEEcCCc
Q 003169 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG--VCV-QT-ETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g--v~~-~t-~~~l~~~~~-----~~~p~ilviNK~D~ 162 (843)
.+.|+||||... +.....+.+..+|++|+|||+++. ..+ .. ..+...+.. .++|.++|+||+|+
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 899999999753 344566677789999999999753 111 22 223333332 36899999999997
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 287 ~ 287 (424)
T PRK12297 287 P 287 (424)
T ss_pred c
Confidence 5
No 269
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.98 E-value=3.9e-09 Score=104.10 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=74.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+++.. ..... ....+..+.....+... +....+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~--~~~~~--------------~~~t~~~~~~~~~~~~~--------------~~~~~l 51 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDN--EFHSS--------------HISTIGVDFKMKTIEVD--------------GIKVRI 51 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcC--CCCCC--------------CCCceeeEEEEEEEEEC--------------CEEEEE
Confidence 6899999999999999999532 11110 00011111111112221 225678
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-H---HcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~---~~~~~p~ilviNK~D~~ 163 (843)
.++||||..+|.......++.+|++++|+|..+.-+.+...-|.. . ...+.|++++.||+|+.
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 999999999999888889999999999999987544333322221 1 12357889999999986
No 270
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.96 E-value=5.8e-09 Score=108.10 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=78.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|+.|+|||||+++++.. ..... + .-|+........+. .+++..
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~--~~~~~------~----------~~t~~~~~~~~~~~------------~~~~~i 58 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTG--EFEKK------Y----------IPTLGVEVHPLKFY------------TNCGPI 58 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhC--CCCCC------C----------CCccceEEEEEEEE------------ECCeEE
Confidence 358999999999999999877532 11110 0 01221111111221 122468
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH---HcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~---~~~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+|.......++.+|++++|+|.++..+.+....|..- ...++|++++.||+|+.
T Consensus 59 ~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 59 CFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 899999999999987777788899999999999987766655444221 12467888999999976
No 271
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.96 E-value=1.1e-08 Score=96.68 Aligned_cols=113 Identities=24% Similarity=0.284 Sum_probs=84.2
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.++--+|-++|..||||||++.+|+... ........|+-|+ ++.++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~---------------~~~i~pt~gf~Ik----tl~~~--------------- 58 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED---------------TDTISPTLGFQIK----TLEYK--------------- 58 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC---------------ccccCCccceeeE----EEEec---------------
Confidence 3445578999999999999999994332 1222333455454 44554
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchh-HHHHHHHH----HcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQ-TETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~-t~~~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
++.++++|.-|+..+..-+.++...+||.|.|||+.+...-| +...+..+ ...+.|++++.||.|..
T Consensus 59 -~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 59 -GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred -ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 899999999999999999999999999999999998854433 23333332 23567999999999998
No 272
>PLN00023 GTP-binding protein; Provisional
Probab=98.95 E-value=5.1e-09 Score=112.56 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=78.7
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|+++|..++|||||+.+++... .... ....-|.+.... .+.+........++. ..+++.
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~--F~~~------------~~pTIG~d~~ik--~I~~~~~~~~~~~ik-~d~~k~ 82 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGS--SIAR------------PPQTIGCTVGVK--HITYGSPGSSSNSIK-GDSERD 82 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCC--cccc------------cCCceeeeEEEE--EEEECCccccccccc-ccCCce
Confidence 34689999999999999999995321 1000 001111222111 122210000000000 011246
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc---------------CCCceEEEEEcCC
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---------------ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~---------------~~~p~ilviNK~D 161 (843)
+.++||||+|+..|.......++.+|++|+|+|.++--......-|. .+.. .++|++||.||+|
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~D 162 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKAD 162 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcc
Confidence 78999999999999998888999999999999998754443333332 2222 1478999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 163 L~ 164 (334)
T PLN00023 163 IA 164 (334)
T ss_pred cc
Confidence 86
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.95 E-value=4.3e-09 Score=107.53 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=69.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++|+...... .|... .+. ...|.... .+. ......+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~----~~~~~-~~~------~~~t~~~~----~~~-------------~~~~~~l 54 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEE----EGAAP-TGV------VETTMKRT----PYP-------------HPKFPNV 54 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC----CCccc-cCc------cccccCce----eee-------------cCCCCCc
Confidence 79999999999999999996532110 11100 000 00111110 111 0013468
Q ss_pred EEEcCCCCccchH---HHH--HHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSS---EVT--AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~---e~~--~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++||||..+... +.. ..+..+|.+++|.| +........+++.+...+.|+++|+||+|+.
T Consensus 55 ~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 55 TLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred eEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 9999999865422 221 22456788777754 3466666677777777889999999999986
No 274
>PRK09866 hypothetical protein; Provisional
Probab=98.93 E-value=1.1e-08 Score=117.03 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCCcc-----chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC--CceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVD-----FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER--IRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d-----f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~--~p~ilviNK~D~~ 163 (843)
...+.|+||||... +...+..++..+|.+++|||+..+.....+.+++.+.+.+ .|+++++||+|+.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 45789999999753 4445778999999999999999988888888888887777 4999999999975
No 275
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.93 E-value=6e-09 Score=108.51 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+++++.. .... ..+.+ ..+. +....++.+. +....+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~--~~~~--------~~~~~---t~~~--~~~~~~i~~~--------------~~~~~l 52 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSG--EYDD--------HAYDA---SGDD--DTYERTVSVD--------------GEESTL 52 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcC--CcCc--------cCcCC---Cccc--cceEEEEEEC--------------CEEEEE
Confidence 6899999999999999999432 1110 00000 0000 0011112221 136789
Q ss_pred EEEcCCCCccchHHHHHHhh-ccCeEEEEEeCCCccchhHHH-HHHHHHc----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALR-ITDGALVVVDCIEGVCVQTET-VLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~-~~D~ailVvda~~gv~~~t~~-~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
++|||||+.++.. ...++ .+|++++|+|+++.-...... .+..+.. .++|+|+|.||+|+.
T Consensus 53 ~i~Dt~G~~~~~~--~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 53 VVIDHWEQEMWTE--DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred EEEeCCCcchHHH--hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 9999999984433 23456 899999999999865443322 2222222 468999999999986
No 276
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.88 E-value=2.1e-08 Score=103.38 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=103.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...-||-++|..|+|||||+|+|+.....-... .|. ..++. ...|. ...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg~----~t~~~-------------~~~~~-------------~~~ 85 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VGV----GTDIT-------------TRLRL-------------SYD 85 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeee-ccc----CCCch-------------hhHHh-------------hcc
Confidence 345689999999999999999997433221111 110 00000 00011 112
Q ss_pred ceEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCccccc-
Q 003169 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLE- 166 (843)
Q Consensus 97 ~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~~~~- 166 (843)
+..++|+||||..| +.......+...|.+++++++.+.--.-.+..|+..... +.+.++++|..|+..--
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~ 165 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGR 165 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcccc
Confidence 57899999999987 666688888999999999999997777777888776543 46889999999987321
Q ss_pred ---c--cCCHHHHHHHHHHHHHHhhhhhhhccCCCCCCeeeeeccceeeeccCccceEE
Q 003169 167 ---L--QVDGEEAYQTFQKVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAF 220 (843)
Q Consensus 167 ---~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~v~~~s~~~g~~~ 220 (843)
+ +.....+.+.+++..+.+..++.. .+ +|++.++..+|++
T Consensus 166 ~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------------V~-pV~~~~~r~~wgl 210 (296)
T COG3596 166 EWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------------VK-PVVAVSGRLPWGL 210 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhh-------------cC-CeEEeccccCccH
Confidence 1 111223344455555555555432 11 5788888888876
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.87 E-value=6.7e-08 Score=101.96 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=71.6
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
......||+++|++|+|||||+|+|+........ ++. +.|.........+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~---------~~~------~~T~~~~~~~~~~~-------------- 77 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS---------AFQ------SETLRVREVSGTVD-------------- 77 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC---------CCC------CceEEEEEEEEEEC--------------
Confidence 3455679999999999999999999765432211 110 11222222233333
Q ss_pred CCceEEEEEcCCCCccchH------H----HHHHhh--ccCeEEEEEeCCC-ccchhHHHHHHHHHc-CC----CceEEE
Q 003169 95 GNEYLINLIDSPGHVDFSS------E----VTAALR--ITDGALVVVDCIE-GVCVQTETVLRQALG-ER----IRPVLT 156 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~------e----~~~~l~--~~D~ailVvda~~-gv~~~t~~~l~~~~~-~~----~p~ilv 156 (843)
+..+++|||||..+... + +...+. ..|++++|..... ........+++.... .+ .+.+++
T Consensus 78 --g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV 155 (249)
T cd01853 78 --GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVV 155 (249)
T ss_pred --CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEE
Confidence 67899999999987731 1 122222 4677777754442 233444455554432 23 368899
Q ss_pred EEcCCcc
Q 003169 157 VNKMDRC 163 (843)
Q Consensus 157 iNK~D~~ 163 (843)
+||+|..
T Consensus 156 ~T~~d~~ 162 (249)
T cd01853 156 LTHAASS 162 (249)
T ss_pred EeCCccC
Confidence 9999986
No 278
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.85 E-value=5.6e-09 Score=97.96 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=81.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
...+|.++|..|+|||+|+-++.... . ..+..--|-++-....+. .+++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~--f--------------d~~~~~tIGvDFkvk~m~--------------vdg~~ 59 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT--F--------------DDLHPTTIGVDFKVKVMQ--------------VDGKR 59 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc--c--------------CccCCceeeeeEEEEEEE--------------EcCce
Confidence 34689999999999999998884322 1 111111122222222222 24568
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH-----cCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~-----~~~~p~ilviNK~D~~ 163 (843)
.++.||||+|++.|...+.+..|.|-|+|+|.|.+..-..-...+|..-. ..++-.++|.||+|+.
T Consensus 60 ~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 60 LKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred EEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch
Confidence 89999999999999999999999999999999998766655567775322 1233345799999977
No 279
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.1e-08 Score=90.82 Aligned_cols=117 Identities=20% Similarity=0.274 Sum_probs=82.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+-..+|+++|..|+|||.|+.++ ..|.... |. |-||-....--..+ .++.
T Consensus 5 kflfkivlvgnagvgktclvrrf--tqglfpp---gq-------------gatigvdfmiktve------------v~ge 54 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRF--TQGLFPP---GQ-------------GATIGVDFMIKTVE------------VNGE 54 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhh--hccCCCC---CC-------------CceeeeeEEEEEEE------------ECCe
Confidence 34678999999999999999998 4555543 21 22332211100111 1345
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-H---HHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-R---QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~---~~~~~~~p~ilviNK~D~~ 163 (843)
..++.||||.|+++|.+-+.+..|.|.+.|+|.|.+.-.......-| + +-...++--|+|.||+|+.
T Consensus 55 kiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 55 KIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred EEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 77899999999999999999999999999999999876655544333 2 2223445567899999976
No 280
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.3e-08 Score=112.03 Aligned_cols=118 Identities=21% Similarity=0.214 Sum_probs=88.2
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
..+.-.+|+|+|++|+|||||+|+|......|....+|+ |-++--+.+..+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GT---------------TRDaiea~v~~~-------------- 314 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGT---------------TRDAIEAQVTVN-------------- 314 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCc---------------chhhheeEeecC--------------
Confidence 334457999999999999999999988888887776774 444444455543
Q ss_pred CCceEEEEEcCCCCccc---------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC------------ce
Q 003169 95 GNEYLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI------------RP 153 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df---------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~------------p~ 153 (843)
++++.|+||.|...= ......++..||.+++||||.++...+...+.+.+...+. |.
T Consensus 315 --G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~ 392 (531)
T KOG1191|consen 315 --GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRI 392 (531)
T ss_pred --CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccce
Confidence 899999999998651 2236678889999999999998877777776666654443 45
Q ss_pred EEEEEcCCcc
Q 003169 154 VLTVNKMDRC 163 (843)
Q Consensus 154 ilviNK~D~~ 163 (843)
|+++||.|..
T Consensus 393 i~~~nk~D~~ 402 (531)
T KOG1191|consen 393 ILVANKSDLV 402 (531)
T ss_pred EEEechhhcc
Confidence 5666666654
No 281
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.84 E-value=4.7e-08 Score=96.06 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=76.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..++|||||+.+|.... .... +.+ ..| .+.....+.. ++....+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~--~~~~---------~~~---t~~--~~~~~~~~~~--------------~~~~~~l 50 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE--FPEN---------YIP---TIG--IDSYSKEVSI--------------DGKPVNL 50 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS--TTSS---------SET---TSS--EEEEEEEEEE--------------TTEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhc--cccc---------ccc---ccc--cccccccccc--------------ccccccc
Confidence 58999999999999999985432 1110 000 001 1211222222 2347789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH-H---cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~-~---~~~~p~ilviNK~D~~ 163 (843)
.|+||+|+.+|.......++.+|++|+|.|.++.-+.....-|... . ....|++++.||.|+.
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~ 117 (162)
T PF00071_consen 51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS 117 (162)
T ss_dssp EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 9999999999988788889999999999999886555554444322 1 2246888999999987
No 282
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.7e-08 Score=97.46 Aligned_cols=113 Identities=22% Similarity=0.184 Sum_probs=78.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeee--eeEEEEEeechhhhhccccccCCC
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKS--TGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~--~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..++.++|..|+|||+|+-++..+. ...+++ .||-. ....+. .+++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-----------F~~~hd-------~TiGvefg~r~~~--------------id~k 53 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-----------FQPVHD-------LTIGVEFGARMVT--------------IDGK 53 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-----------cccccc-------ceeeeeeceeEEE--------------EcCc
Confidence 4578999999999999999883221 111111 11111 111111 2346
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH----HHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~----~~~~~~~p~ilviNK~D~~ 163 (843)
..++++|||.||+.|..-+.+..+.+-|||||.|.+.--+......|- |....+..++++.||+|+.
T Consensus 54 ~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~ 124 (216)
T KOG0098|consen 54 QIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLE 124 (216)
T ss_pred eEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhh
Confidence 789999999999999999999999999999999998655555544442 2223455677899999987
No 283
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=2.3e-08 Score=99.28 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=84.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
......|.++|..++|||+++.++...+-.... . ..-||-.+.. ++.. ++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~------------sTiGIDFk~k--ti~l--------------~g 58 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--I------------STIGIDFKIK--TIEL--------------DG 58 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--c------------ceEEEEEEEE--EEEe--------------CC
Confidence 355778999999999999999998433211110 0 0011222211 1221 23
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH----HcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
+..++.+|||.|+..|..-+.+++|.|+|++||+|.+...+.....-|... ...++|.+||.||+|+.
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 477899999999999999999999999999999999987776665556432 23478899999999987
No 284
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.2e-08 Score=99.47 Aligned_cols=115 Identities=20% Similarity=0.184 Sum_probs=81.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.-+|+++|..++|||||+-++... -.++. .|. ||..+..+-.+. ..+...
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~--~F~e~------------~e~----TIGaaF~tktv~------------~~~~~i 54 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKD--QFHEN------------IEP----TIGAAFLTKTVT------------VDDNTI 54 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhC--ccccc------------ccc----ccccEEEEEEEE------------eCCcEE
Confidence 347999999999999999998332 11110 011 455444444443 122367
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC-c-eE--EEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-R-PV--LTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~-p-~i--lviNK~D~~ 163 (843)
++-||||.|.++|.+-.--++|.|++||+|.|.++--+.+...-|-.=..... | ++ |+.||+|+.
T Consensus 55 kfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 55 KFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred EEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 89999999999999999999999999999999998777777666643333333 3 33 589999988
No 285
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.80 E-value=2e-08 Score=115.58 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=82.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..||++|.+|+|||||.|+|.+.. .+ .|+. -|.|++.....+.+. ++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~---q~--VgNw-----------pGvTVEkkeg~~~~~----------------~~~ 51 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN---QK--VGNW-----------PGVTVEKKEGKLKYK----------------GHE 51 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC---ce--ecCC-----------CCeeEEEEEEEEEec----------------Cce
Confidence 359999999999999999993322 11 3321 378898888888886 788
Q ss_pred EEEEcCCCCccchH----H--HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSS----E--VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~----e--~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+.++|.||..++.. | +...+ ...|++|-|+||+. -.....+--|+.+.++|+++++|++|..
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 99999999876532 1 23333 35799999999975 3334444457788999999999999975
No 286
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.1e-08 Score=98.01 Aligned_cols=124 Identities=19% Similarity=0.267 Sum_probs=82.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+.|-++|..|+|||+|.-.|++... .+++ .+|..+.+.+... +
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~------~~Tv-------------tSiepn~a~~r~g----------------s 81 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH------RGTV-------------TSIEPNEATYRLG----------------S 81 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc------cCee-------------eeeccceeeEeec----------------C
Confidence 346889999999999999999955421 2221 2556566665554 4
Q ss_pred eEEEEEcCCCCccchHHHHHHhh---ccCeEEEEEeCCCcc---chhHHHHHHH---H--HcCCCceEEEEEcCCccccc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALR---ITDGALVVVDCIEGV---CVQTETVLRQ---A--LGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~---~~D~ailVvda~~gv---~~~t~~~l~~---~--~~~~~p~ilviNK~D~~~~~ 166 (843)
....|||-|||.+........+. .+-++|+|||+..-. ..-.+.+... + ...+.|++++.||-|+.
T Consensus 82 ~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~--- 158 (238)
T KOG0090|consen 82 ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF--- 158 (238)
T ss_pred cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh---
Confidence 45899999999999888777776 799999999997521 1111222222 2 13345677899999998
Q ss_pred ccCCHHH-HHHHHHH
Q 003169 167 LQVDGEE-AYQTFQK 180 (843)
Q Consensus 167 ~~~~~~~-~~~~~~~ 180 (843)
-+.+.+ +.+.++.
T Consensus 159 -tAkt~~~Ir~~LEk 172 (238)
T KOG0090|consen 159 -TAKTAEKIRQQLEK 172 (238)
T ss_pred -hcCcHHHHHHHHHH
Confidence 554443 3333333
No 287
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.78 E-value=5.5e-08 Score=101.53 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCccc-------------hHHHHHHhh-ccCeEEEEEeCCCccchhH-HHHHHHHHcCCCceEEEEEcCC
Q 003169 97 EYLINLIDSPGHVDF-------------SSEVTAALR-ITDGALVVVDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df-------------~~e~~~~l~-~~D~ailVvda~~gv~~~t-~~~l~~~~~~~~p~ilviNK~D 161 (843)
-..++||||||..+. ...+..+++ ..+.+++|+||..++..+. ..+.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 357999999998632 123666777 4568999999999988877 5777888888999999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 204 ~~ 205 (240)
T smart00053 204 LM 205 (240)
T ss_pred CC
Confidence 87
No 288
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.76 E-value=4.8e-08 Score=101.27 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..|+++|..|+|||||+++|....-. . +. ..|+-......... ......+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~--~--------------~~--~~t~~~~~~~~~~~------------~~~~~~~ 55 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP--E--------------GY--PPTIGNLDPAKTIE------------PYRRNIK 55 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc--c--------------cC--CCceeeeeEEEEEE------------eCCCEEE
Confidence 68999999999999999999433211 0 00 01221111111111 0112567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-cchhHHHHHH-HHHc---CCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-VCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-v~~~t~~~l~-~~~~---~~~p~ilviNK~D~~ 163 (843)
+.+|||+|+.+|..-+....+.++++++|+|.... -.......|. .+.. .+.|++++.||+|+.
T Consensus 56 ~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 56 LQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred EEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 99999999999998899999999999999999862 2223333333 3333 258999999999998
No 289
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.75 E-value=5.9e-08 Score=101.44 Aligned_cols=115 Identities=21% Similarity=0.278 Sum_probs=76.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.|-+|+++|-+|+|||||+++|.... .+ .+...++ |+.....+..++ ..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK---pk--Va~YaFT-----------TL~P~iG~v~yd---------------df 243 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK---PK--VAHYAFT-----------TLRPHIGTVNYD---------------DF 243 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC---Cc--cccccee-----------eeccccceeecc---------------cc
Confidence 46789999999999999999994332 22 3433333 555555555554 12
Q ss_pred eEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCc---cc-hhHHHHHHHHHc-----CCCceEEEEEcCC
Q 003169 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG---VC-VQTETVLRQALG-----ERIRPVLTVNKMD 161 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~g---v~-~~t~~~l~~~~~-----~~~p~ilviNK~D 161 (843)
..+.+-|.||.+. .-.+..+.+..|+..++|||.+.+ -- .|-..+|..+.. ...|.++|+||||
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 3499999999753 333456666778999999999976 22 222334433332 3558999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
.+
T Consensus 324 ~~ 325 (366)
T KOG1489|consen 324 LP 325 (366)
T ss_pred ch
Confidence 86
No 290
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3e-08 Score=96.40 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=81.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..-.+|.++|--+|||||++..| . .|+...+ .| |+-...-++.|.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykL--k--------~~E~vtt--vP-------TiGfnVE~v~yk---------------- 59 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKL--K--------LGEIVTT--VP-------TIGFNVETVEYK---------------- 59 (181)
T ss_pred cceEEEEEEeccCCCceeeeEee--c--------cCCcccC--CC-------ccccceeEEEEc----------------
Confidence 34457999999999999999888 1 1211101 11 444444455554
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc--hhHHHHHHHHHc---CCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~--~~t~~~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
+..+++||.-|+..+..-...+.+..+++|+|||+++-.. ..-.++.+.... .+.|++++.||+|.+
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 8899999999999999999999999999999999998432 222334444433 366888999999999
No 291
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=8.4e-08 Score=93.52 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=82.8
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+.+.-+++++|..++|||||+.+++|..--.+- +-||-....+..+. .++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~Y------------------qATIGiDFlskt~~------------l~d 68 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTY------------------QATIGIDFLSKTMY------------LED 68 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccc------------------cceeeeEEEEEEEE------------EcC
Confidence 344568999999999999999999886532111 11222222221111 133
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHcCC----CceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGER----IRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~~~----~p~ilviNK~D~~ 163 (843)
..+++.||||.|+++|..-+-+++|.+.+||+|.|.++--+.+....| .-+..++ +-+++|.||-|+.
T Consensus 69 ~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~ 141 (221)
T KOG0094|consen 69 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS 141 (221)
T ss_pred cEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc
Confidence 478999999999999999999999999999999999986655444444 3444332 2345799999988
No 292
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.73 E-value=4.7e-08 Score=98.94 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCCce
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.+|+++|..|+|||||+++|... ..... .. .|+.... ..+.+. +...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~--~~~~~-~~---------------~t~~~~~~~~~~~~--------------~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLG--EFPEE-YH---------------PTVFENYVTDCRVD--------------GKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCCcc-cC---------------CcccceEEEEEEEC--------------CEEE
Confidence 37999999999999999999521 11110 00 0111000 011111 1245
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHH-HHH--cCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLR-QAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~-~~~--~~~~p~ilviNK~D~~ 163 (843)
.++++||||+.+|.......++.+|++++|.|....-..+.. ..|. .+. ...+|++++.||+|+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~ 118 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLR 118 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhh
Confidence 789999999988765444567899999999999764433332 1232 222 2368999999999975
No 293
>COG2262 HflX GTPases [General function prediction only]
Probab=98.71 E-value=6.9e-08 Score=104.98 Aligned_cols=116 Identities=23% Similarity=0.256 Sum_probs=76.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..+..|+++|-.|+|||||+|+|....-.... .. =-|.+...-.+.+. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d----------~L------FATLdpttR~~~l~---------------~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD----------QL------FATLDPTTRRIELG---------------D 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc----------cc------cccccCceeEEEeC---------------C
Confidence 45789999999999999999999422211111 10 01444443344443 2
Q ss_pred ceEEEEEcCCCCcc-ch-------HHHHHHhhccCeEEEEEeCCCcc-chhHH---HHHHHHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVD-FS-------SEVTAALRITDGALVVVDCIEGV-CVQTE---TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~d-f~-------~e~~~~l~~~D~ailVvda~~gv-~~~t~---~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+.|.||-|.++ .- ..+......+|..+.|||+++.- ..+-. .++.......+|+|+|.||+|+.
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~ 317 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLL 317 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc
Confidence 67899999999864 21 23444557899999999999863 22323 33344334567999999999977
No 294
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.70 E-value=6.9e-08 Score=95.01 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|..|+|||||+.+++... ... ++.+. .+. . ...+.++ ++...+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~--f~~---------~~~~~---~~~-~---~~~i~~~--------------~~~~~l 49 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS--YVQ---------LESPE---GGR-F---KKEVLVD--------------GQSHLL 49 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC--CCC---------CCCCC---ccc-e---EEEEEEC--------------CEEEEE
Confidence 69999999999999999985421 111 00010 000 0 0112221 235679
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc----CCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG----ERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~----~~~p~ilviNK~D~~ 163 (843)
.++||+|..+. ...+.+|++++|+|.++--+.+.. ..+..+.. .++|++++.||+|+.
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 99999999763 345789999999999987766663 33333332 356889999999975
No 295
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.69 E-value=9.8e-08 Score=100.31 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=72.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
--.++++|.+++|||||+++| +++-++ .+...++ |...-...+.|+ +.
T Consensus 63 da~v~lVGfPsvGKStLL~~L---Tnt~se--va~y~FT-----------Tl~~VPG~l~Y~----------------ga 110 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKL---TNTKSE--VADYPFT-----------TLEPVPGMLEYK----------------GA 110 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHH---hCCCcc--ccccCce-----------ecccccceEeec----------------Cc
Confidence 458999999999999999999 332222 3322222 444445556665 89
Q ss_pred EEEEEcCCCCccc-------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC-----ceEEEEEcCC
Q 003169 99 LINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-----RPVLTVNKMD 161 (843)
Q Consensus 99 ~i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~-----p~ilviNK~D 161 (843)
.|.|+|+||...= -.++.+.+|.||.+++|+|+.+.... -..+.+.+...++ |+-+.+.|-+
T Consensus 111 ~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~ 184 (365)
T COG1163 111 QIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKE 184 (365)
T ss_pred eEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEec
Confidence 9999999997531 25688999999999999999875432 2233344443332 4445554444
No 296
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.68 E-value=2.2e-07 Score=97.39 Aligned_cols=97 Identities=25% Similarity=0.274 Sum_probs=63.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.+|+|||||+++|...... .+. ..+.|.......+.+. +..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-----v~~-----------~~~tT~~~~~g~~~~~----------------~~~i 49 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-----VAA-----------YEFTTLTCVPGVLEYK----------------GAKI 49 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-----ccC-----------CCCccccceEEEEEEC----------------CeEE
Confidence 5899999999999999999533211 110 0122333333344454 7789
Q ss_pred EEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC
Q 003169 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER 150 (843)
Q Consensus 101 ~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~ 150 (843)
+++||||+.+ +..++...++.+|++++|+|+++... +-..+.+.+...+
T Consensus 50 ~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~g 105 (233)
T cd01896 50 QLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVG 105 (233)
T ss_pred EEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcC
Confidence 9999999864 33467788999999999999986432 4444555554433
No 297
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6.3e-08 Score=90.02 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=80.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..++.++|+.|.|||.|+.+++...-.-+. ...-|+...+..++. .++..
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDds--------------sHTiGveFgSrIinV----------------GgK~v 58 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDS--------------SHTIGVEFGSRIVNV----------------GGKTV 58 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccc--------------cceeeeeecceeeee----------------cCcEE
Confidence 457899999999999999999654321110 001122222222222 33578
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH----HHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR----QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~----~~~~~~~p~ilviNK~D~~ 163 (843)
++.||||.|++.|..-+.+..|.|-||+||.|++..-......-|- .+...++-+|++.||-|+.
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~ 127 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD 127 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC
Confidence 9999999999999999999999999999999999766555555553 2233455567789999987
No 298
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.68 E-value=8.7e-08 Score=97.69 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=49.1
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHH-HHc--CCCceEEEEEcCCcc
Q 003169 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQ-ALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~-~~~--~~~p~ilviNK~D~~ 163 (843)
++.+.++||||+|..+.. ....++.+|++|+|+|.++.-+.+.. ..|.. +.. .+.|++++.||+|+.
T Consensus 63 ~~~v~l~iwDTaG~~~~~--~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKD--RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CEEEEEEEEeCCCChhhh--hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 347899999999987632 33467899999999999886555443 23432 222 367899999999986
No 299
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.67 E-value=3.9e-08 Score=94.86 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=82.6
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
....+|.++|.+|+|||+|++++.+..= .. ....||..-..+-.+. .+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF--~~----------------qykaTIgadFltKev~------------Vd~~ 56 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF--SQ----------------QYKATIGADFLTKEVQ------------VDDR 56 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH--HH----------------HhccccchhheeeEEE------------EcCe
Confidence 4567999999999999999999965420 00 0011222111111111 1234
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-----HHHc---CCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-----QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-----~~~~---~~~p~ilviNK~D~~ 163 (843)
...+.||||.|+++|.+.-..-.|.+|.+++|.|....-+.....-|+ ++.. ..-|.||+.||+|..
T Consensus 57 ~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 57 SVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 678899999999999988888889999999999998877777766665 3321 234889999999987
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.65 E-value=7.3e-08 Score=95.53 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCCccch----HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCC-CceEEEEEcC
Q 003169 97 EYLINLIDSPGHVDFS----SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-IRPVLTVNKM 160 (843)
Q Consensus 97 ~~~i~liDTPGh~df~----~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p~ilviNK~ 160 (843)
...+.||||||..+.. ..+...+..+|++|+|+++...........+.+..... ...++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 4469999999986522 44777889999999999999977766665666555544 4467788985
No 301
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.64 E-value=7e-08 Score=89.45 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.+.++|-.++|||||++... .|-..+ ..-+.+|+.+. .+ ...+..+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia--~g~~~e------------dmiptvGfnmr------k~--------------tkgnvti 67 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIA--RGQYLE------------DMIPTVGFNMR------KV--------------TKGNVTI 67 (186)
T ss_pred eEEEEeeccCCcceEEEEEe--eccchh------------hhcccccceeE------Ee--------------ccCceEE
Confidence 57899999999999998761 111100 01123343332 11 1236789
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc-hhHH----HHHHHHHcCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-VQTE----TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~-~~t~----~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
-++|.||+..|.....+.-|.+|+++++|||.+.-. ...+ .++....-.++|+++..||.|++
T Consensus 68 klwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 68 KLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred EEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCc
Confidence 999999999999999999999999999999998321 1222 22222334588999999999999
No 302
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.63 E-value=4.6e-07 Score=94.06 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=79.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|.++|+.++||||....+......- |+ ..-|-|++.....+.+. ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-----------dT----~~L~~T~~ve~~~v~~~---------------~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-----------DT----LRLEPTIDVEKSHVRFL---------------SFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-----------GG----GG-----SEEEEEEECT---------------TSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-----------hc----cccCCcCCceEEEEecC---------------CCcEE
Confidence 47899999999999999884432211 11 11233554443333332 35689
Q ss_pred EEEcCCCCccchHH-----HHHHhhccCeEEEEEeCCC-ccchhH---HHHHHHHHc--CCCceEEEEEcCCcccccccC
Q 003169 101 NLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIE-GVCVQT---ETVLRQALG--ERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 101 ~liDTPGh~df~~e-----~~~~l~~~D~ailVvda~~-gv~~~t---~~~l~~~~~--~~~p~ilviNK~D~~~~~~~~ 169 (843)
++||+||+.+|... ...-++.+++.|+|+|+.. .....- ...+..+.+ .++++.+++.|||.. .
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l----~- 125 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL----S- 125 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS------
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC----C-
Confidence 99999999988765 4666799999999999993 322211 233333433 356778999999976 3
Q ss_pred CHHHHHHHHHHHHHHhhhhhh
Q 003169 170 DGEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~l~ 190 (843)
.+.-.+.++.+.+.+...+.
T Consensus 126 -~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 126 -EDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555554
No 303
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.63 E-value=6.1e-07 Score=96.17 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=73.4
Q ss_pred HHHHHhhc----ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeec
Q 003169 7 EELRRIMD----FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT 82 (843)
Q Consensus 7 ~~~~~~~~----~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 82 (843)
+.|.+++. ...+..+|+++|..|+|||||+|+|+...........+ .|......+..+
T Consensus 22 ~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s---------------~t~~~~~~~~~~--- 83 (313)
T TIGR00991 22 TKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS---------------EGLRPMMVSRTR--- 83 (313)
T ss_pred HHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC---------------cceeEEEEEEEE---
Confidence 44555553 22456799999999999999999997554322111000 011111122222
Q ss_pred hhhhhccccccCCCceEEEEEcCCCCccchH---HHHHHhh------ccCeEEEEEeCCC-ccchhHHHHHHHHHc-C--
Q 003169 83 DAALKSYRGERQGNEYLINLIDSPGHVDFSS---EVTAALR------ITDGALVVVDCIE-GVCVQTETVLRQALG-E-- 149 (843)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~liDTPGh~df~~---e~~~~l~------~~D~ailVvda~~-gv~~~t~~~l~~~~~-~-- 149 (843)
.+..+++|||||..+... +....++ ..|++++|.+... ........+++.... +
T Consensus 84 -------------~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~ 150 (313)
T TIGR00991 84 -------------AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK 150 (313)
T ss_pred -------------CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh
Confidence 278999999999887522 2223232 4889999954332 234344444443322 1
Q ss_pred --CCceEEEEEcCCcc
Q 003169 150 --RIRPVLTVNKMDRC 163 (843)
Q Consensus 150 --~~p~ilviNK~D~~ 163 (843)
-.+.|+++|+.|..
T Consensus 151 ~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 151 DIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhhccEEEEEECCccC
Confidence 24689999999965
No 304
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.62 E-value=3.3e-08 Score=84.04 Aligned_cols=71 Identities=35% Similarity=0.531 Sum_probs=58.8
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEeccccccccce-eee
Q 003169 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQYITKNA-TLT 468 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~~tg-TL~ 468 (843)
++++|||||+|++||+|++++ +.+.. +....+|.+|+.+++...++++.+.||+++++.++++.+ +.| |||
T Consensus 3 v~~grV~sG~l~~gd~v~~~~-~~~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i-~~Gdtl~ 74 (74)
T PF03144_consen 3 VATGRVYSGTLKKGDKVRVLP-NGTGK---KGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAI-RRGDTLT 74 (74)
T ss_dssp EEEEEEEESEEETTEEEEEES-TTTTE---ECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCS-STTEEEE
T ss_pred EEEEEEEEeEEcCCCEEEECc-cCCcc---eeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCc-CcCCEEC
Confidence 899999999999999999876 42211 123479999999999999999999999999999998832 566 775
No 305
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.3e-07 Score=91.86 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=81.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
-...|+++|.+++|||-|+.++....-.+ |.+.-|-++-..-++. .+++-
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~----------------~SksTIGvef~t~t~~--------------vd~k~ 62 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSL----------------ESKSTIGVEFATRTVN--------------VDGKT 62 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCc----------------ccccceeEEEEeecee--------------ecCcE
Confidence 35679999999999999999983222111 1111111221111111 24567
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHc---CCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~---~~~p~ilviNK~D~~ 163 (843)
.+..||||.|+.+|..-+.+..|.|-||++|.|.+...+.+...-| +.++. .+++++++.||+|+.
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~ 132 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN 132 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh
Confidence 8899999999999998899999999999999999977666654444 23332 467888999999987
No 306
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.57 E-value=2.2e-07 Score=94.53 Aligned_cols=113 Identities=22% Similarity=0.260 Sum_probs=79.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeE-EEEEeechhhhhccccccCCCc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGI-SLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
..+|+++|..|+|||+|+-++++.. ...++.+ |+..++- .+. .++..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~-----------f~~~y~p-------tied~y~k~~~--------------v~~~~ 50 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR-----------FVEDYDP-------TIEDSYRKELT--------------VDGEV 50 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc-----------cccccCC-------CccccceEEEE--------------ECCEE
Confidence 4689999999999999999984432 1222222 2221110 011 12346
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHH-HHHHH----HcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~-~l~~~----~~~~~p~ilviNK~D~~ 163 (843)
..+.|+||+|..+|...-...++.+||.++|.+.++--+.+... ++.++ ....+|+++|.||+|+.
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~ 121 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE 121 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch
Confidence 77889999999999999999999999999999999866554432 22222 23457999999999988
No 307
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.56 E-value=1e-06 Score=96.37 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=81.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCcccccccc---ceeeeee---EEEEEeechhhhhcccc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERG---ITIKSTG---ISLYYEMTDAALKSYRG 91 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~rg---iTi~~~~---~~~~~~~~~~~~~~~~~ 91 (843)
-..|+++|++++|||||+++|....-.-.-. ...+.+..|..+.. ..| .|.+... -.....
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~----------- 84 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQS-AAGKTIMTTEPKFVPNEAVEIN----------- 84 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcC-CCCCCcccCCCccccCcceEEe-----------
Confidence 3489999999999999999997662110000 00001112222211 123 1222111 001111
Q ss_pred ccCCCceEEEEEcCCCCcc-------------------------chHH----HHHHhh-ccCeEEEEE-eCC------Cc
Q 003169 92 ERQGNEYLINLIDSPGHVD-------------------------FSSE----VTAALR-ITDGALVVV-DCI------EG 134 (843)
Q Consensus 92 ~~~~~~~~i~liDTPGh~d-------------------------f~~e----~~~~l~-~~D~ailVv-da~------~g 134 (843)
..++-..++.||||+|+.+ |... +...++ .+|.+|+|. |++ ++
T Consensus 85 ~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~ 164 (492)
T TIGR02836 85 INEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPRED 164 (492)
T ss_pred ccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCcccccccc
Confidence 1123357899999999754 2222 555666 899999999 886 55
Q ss_pred cchhHHHHHHHHHcCCCceEEEEEcCCc
Q 003169 135 VCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 135 v~~~t~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
.....++++..+++.++|.++++||.|-
T Consensus 165 y~~aEe~~i~eLk~~~kPfiivlN~~dp 192 (492)
T TIGR02836 165 YVEAEERVIEELKELNKPFIILLNSTHP 192 (492)
T ss_pred chHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 6677788889999999999999999994
No 308
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.56 E-value=4.5e-07 Score=83.57 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=82.3
Q ss_pred cCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 16 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
+.+-.+|..+|-.++||||++..| .++ |-...-+..|+.+. ++.+.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL-----------~sE----D~~hltpT~GFn~k----~v~~~--------------- 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQL-----------KSE----DPRHLTPTNGFNTK----KVEYD--------------- 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHH-----------ccC----ChhhccccCCcceE----EEeec---------------
Confidence 344457999999999999999999 331 22222334566553 33443
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch--hHHHH---HHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV--QTETV---LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~--~t~~~---l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+++|++|..|......-+.++....|+.|+|||+.+.-.. ..+++ ++.-+...+|+.++.||.|+.
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 368999999999999999999999999999999998874221 12222 233334467999999999998
No 309
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=7.7e-07 Score=81.97 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=87.7
Q ss_pred CccccHHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEe
Q 003169 1 MVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYE 80 (843)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~ 80 (843)
|.++....+.+++... --.|..+|-.++||||++-.|-.......-. .-|+.++ +..|+
T Consensus 1 Mgn~~sk~~~k~f~~K--E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip---------------TvGFnve----tVtyk 59 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNK--EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---------------TVGFNVE----TVTYK 59 (180)
T ss_pred CcchHHHHHHHHhCcc--cceEEEEecccCCceehhhHHhcCCCccccc---------------ccceeEE----EEEee
Confidence 3444344445555532 3368899999999999999983322211111 1134443 23343
Q ss_pred echhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccc--hhHHHHHHHH---HcCCCceEE
Q 003169 81 MTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC--VQTETVLRQA---LGERIRPVL 155 (843)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~--~~t~~~l~~~---~~~~~p~il 155 (843)
+.++|++|..|......-+.++....-|.|+|+|+.+.-. ..-.++-+.. .....++++
T Consensus 60 ----------------N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~Lv 123 (180)
T KOG0071|consen 60 ----------------NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILI 123 (180)
T ss_pred ----------------eeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEE
Confidence 8899999999999999999999999999999999987522 1112222222 234567888
Q ss_pred EEEcCCcccccccC-CHHHH
Q 003169 156 TVNKMDRCFLELQV-DGEEA 174 (843)
Q Consensus 156 viNK~D~~~~~~~~-~~~~~ 174 (843)
..||.|++ ++ .|+++
T Consensus 124 lANkQDlp----~A~~pqei 139 (180)
T KOG0071|consen 124 LANKQDLP----DAMKPQEI 139 (180)
T ss_pred EecCcccc----cccCHHHH
Confidence 99999999 65 55553
No 310
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.5e-07 Score=83.52 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=79.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-++.|+|...+|||+++-+.+..+-.+.- + ..-||..+...+ |+ ..+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~af-------v-------sTvGidFKvKTv---yr-------------~~kRi 70 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAF-------V-------STVGIDFKVKTV---YR-------------SDKRI 70 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccce-------e-------eeeeeeEEEeEe---ee-------------cccEE
Confidence 347899999999999999887433211100 0 011333332211 11 11367
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHH-H---HcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-A---LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~-~---~~~~~p~ilviNK~D~~ 163 (843)
++.++||.|++.+..-+...+|.++|.||+.|.+..-......-|-. . ...+.|+|++.||+|+.
T Consensus 71 klQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 71 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred EEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 89999999999999999999999999999999987554444433322 1 23478999999999987
No 311
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.48 E-value=6.1e-07 Score=83.27 Aligned_cols=113 Identities=21% Similarity=0.266 Sum_probs=79.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
..+|+|.+|+|||+|+-++-.. .. .|....+ |.++...-+.. ..+...++
T Consensus 10 kllIigDsgVGKssLl~rF~dd--tF----s~sYitT----------iGvDfkirTv~--------------i~G~~VkL 59 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADD--TF----SGSYITT----------IGVDFKIRTVD--------------INGDRVKL 59 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhc--cc----ccceEEE----------eeeeEEEEEee--------------cCCcEEEE
Confidence 4579999999999999887322 11 1211100 11111111222 23457899
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC---CCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~---~~p~ilviNK~D~~ 163 (843)
.|+||.|.+.|..-+....+...++++|.|.+.|-+...-.-|-+-... .+|-++|.||.|.+
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDP 125 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCc
Confidence 9999999999999999999999999999999998877776555443333 45788999999987
No 312
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.45 E-value=2.2e-07 Score=95.02 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=56.0
Q ss_pred ceEEEEEcCCCCccchH---------HHHHHhhccCeEEEEEeCCCccchhHH-----HHHHHHHcCCCceEEEEEcCCc
Q 003169 97 EYLINLIDSPGHVDFSS---------EVTAALRITDGALVVVDCIEGVCVQTE-----TVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~---------e~~~~l~~~D~ailVvda~~gv~~~t~-----~~l~~~~~~~~p~ilviNK~D~ 162 (843)
.+.+.||||||+..-.. +..++ .---.+++|||....-.+.|- .....+.+.++|.|++.||.|.
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 46799999999876322 22211 123356789998776555552 2234556789999999999999
Q ss_pred ccccccCCHHHHHHHHHHHHHH
Q 003169 163 CFLELQVDGEEAYQTFQKVIEN 184 (843)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (843)
...++-..+..-++.|++.+++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~ 215 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNE 215 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 8444444444555556655553
No 313
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=3.4e-07 Score=87.63 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=87.8
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh-cCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhh
Q 003169 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA-AGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 8 ~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~-~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
=+.++|.+.+.. +|.|+|.-++||||+++++=.. ++. .|. ++.. + ---|+.....+.+..
T Consensus 7 gl~~~~~~Ke~y-~vlIlgldnAGKttfLe~~Kt~~~~~-----~~~---l~~~--k--i~~tvgLnig~i~v~------ 67 (197)
T KOG0076|consen 7 GLYKYMFKKEDY-SVLILGLDNAGKTTFLEALKTDFSKA-----YGG---LNPS--K--ITPTVGLNIGTIEVC------ 67 (197)
T ss_pred HHHHHHhhhhhh-hheeeccccCCchhHHHHHHHHHHhh-----hcC---CCHH--H--eecccceeecceeec------
Confidence 355666654444 8999999999999999998221 111 110 0000 0 001333333333332
Q ss_pred hccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-----chhHHHHHHHHHcCCCceEEEEEcCC
Q 003169 87 KSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----CVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-----~~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
+..+++||.-|.....+-.......|.++++||||.+.- ..+.+.+..+=...++|+++.+||-|
T Consensus 68 ----------~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 68 ----------NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred ----------cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 568999999999999999999999999999999999842 23335555666678999999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 138 ~q 139 (197)
T KOG0076|consen 138 LQ 139 (197)
T ss_pred hh
Confidence 98
No 314
>PRK13768 GTPase; Provisional
Probab=98.40 E-value=8.5e-07 Score=94.15 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCccchH---H---HHHHhhc--cCeEEEEEeCCCccchhHHHHHHHH-----HcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSS---E---VTAALRI--TDGALVVVDCIEGVCVQTETVLRQA-----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~---e---~~~~l~~--~D~ailVvda~~gv~~~t~~~l~~~-----~~~~~p~ilviNK~D~~ 163 (843)
..+.+|||||+.++.. . ..+.+.. ++++++|+|+..+..+.+....... ...++|+++++||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 4689999999876432 2 2222333 8999999999887766664333222 25689999999999987
No 315
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.36 E-value=2.9e-07 Score=86.21 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=79.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.+|+++|..=+|||+|+-+..... ...... .|++.+..+-.. +.++...
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~Enk--Fn~kHl----------------sTlQASF~~kk~------------n~ed~ra 62 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENK--FNCKHL----------------STLQASFQNKKV------------NVEDCRA 62 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhh--cchhhH----------------HHHHHHHhhccc------------cccccee
Confidence 4589999999999999997774321 100000 022222111000 1223456
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH----HHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~~~~p~ilviNK~D~~ 163 (843)
.++||||.|+..|...---..|.+|||+||.|.++.-+.|-..-| +++....+-+++|.||+|+.
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHH
Confidence 789999999999987777778999999999999998888876555 44555566788999999987
No 316
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.33 E-value=5e-06 Score=89.35 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=70.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.||.|+|..|.|||||++.|+......... ..+.......+..++......+.- ++-...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~~l~ 64 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEE--------------NGVKLN 64 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEE--------------TCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEecc--------------CCcceE
Confidence 589999999999999999997653322210 001111122233334433222211 123568
Q ss_pred EEEEcCCCCccchHH--------------HHHHh-------------hccCeEEEEEeCC-CccchhHHHHHHHHHcCCC
Q 003169 100 INLIDSPGHVDFSSE--------------VTAAL-------------RITDGALVVVDCI-EGVCVQTETVLRQALGERI 151 (843)
Q Consensus 100 i~liDTPGh~df~~e--------------~~~~l-------------~~~D~ailVvda~-~gv~~~t~~~l~~~~~~~~ 151 (843)
+++|||||+.|.... ....+ ...|+|++.++++ .|+.+.....++.+ ...+
T Consensus 65 LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L-s~~v 143 (281)
T PF00735_consen 65 LTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL-SKRV 143 (281)
T ss_dssp EEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH-TTTS
T ss_pred EEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh-cccc
Confidence 999999998753211 11111 1367999999986 57888888877776 4458
Q ss_pred ceEEEEEcCCcc
Q 003169 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNK~D~~ 163 (843)
++|-||.|.|..
T Consensus 144 NvIPvIaKaD~l 155 (281)
T PF00735_consen 144 NVIPVIAKADTL 155 (281)
T ss_dssp EEEEEESTGGGS
T ss_pred cEEeEEeccccc
Confidence 888899999965
No 317
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.33 E-value=1.2e-06 Score=79.57 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=67.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|+++|.+|+|||||+++|-++.-...+ .. ..+|. +.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK-----------------------TQ--Ave~~----------------d~- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK-----------------------TQ--AVEFN----------------DK- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc-----------------------cc--eeecc----------------Cc-
Confidence 47899999999999999999222111110 01 12332 11
Q ss_pred EEEEcCCC----CccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 100 INLIDSPG----HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPG----h~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..||||| |..+.......+..+|..++|-.+.++-+.-.-.. +.-...|.|-+++|.|+.
T Consensus 40 -~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f---~~~~~k~vIgvVTK~DLa 103 (148)
T COG4917 40 -GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGF---LDIGVKKVIGVVTKADLA 103 (148)
T ss_pred -cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCccc---ccccccceEEEEeccccc
Confidence 2489999 66777778888899999999999998754433322 223345688899999988
No 318
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.30 E-value=3.4e-06 Score=92.27 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH--HHHHHHHcCCCceEEEEEcCCcc
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~--~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..++.+.||||+|... .++. ....||.+++|++...|-..|.. .+++.+ -++|+||+|+.
T Consensus 145 ~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~a------DIiVVNKaDl~ 207 (332)
T PRK09435 145 EAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKKGIMELA------DLIVINKADGD 207 (332)
T ss_pred hccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHhhhhhhh------heEEeehhccc
Confidence 34578899999999883 2322 46789999999875555444432 233333 38999999987
No 319
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.29 E-value=2.7e-06 Score=93.70 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=61.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccc---eeeeeeEEEEEeechhhhhccccccCC
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGI---TIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgi---Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
..||||+|..|+|||||+|+|.+..+ . .+.....|. |.+.. .+.+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~---~-----------d~~aA~tGv~etT~~~~--~Y~~p--------------- 83 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGH---E-----------DEGAAPTGVVETTMEPT--PYPHP--------------- 83 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--T---T-----------STTS--SSSHSCCTS-E--EEE-S---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC---C-----------CcCcCCCCCCcCCCCCe--eCCCC---------------
Confidence 34999999999999999999932211 0 011111122 22221 12221
Q ss_pred CceEEEEEcCCCCc--cchHHH---HHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCccc
Q 003169 96 NEYLINLIDSPGHV--DFSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCF 164 (843)
Q Consensus 96 ~~~~i~liDTPGh~--df~~e~---~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~ 164 (843)
+--.+.|||.||.. +|..+. .-.+...|..|+|.+. -.......+++.+...++|..+|-+|+|..+
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDL 155 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHH
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccH
Confidence 22358999999974 343321 1145678976665543 3455566777888899999999999999843
No 320
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.28 E-value=1.2e-05 Score=83.10 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=67.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.+|.++|..|+||||+.|.|+.....-.. .+ ....|.........+. +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~--~~------------~~~~t~~~~~~~~~~~----------------g~~ 50 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG--SS------------AKSVTQECQKYSGEVD----------------GRQ 50 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS----TT------------TSS--SS-EEEEEEET----------------TEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec--cc------------cCCcccccceeeeeec----------------ceE
Confidence 48999999999999999999766542221 00 0112222222233343 789
Q ss_pred EEEEcCCCCccc-------hHHHHHHh----hccCeEEEEEeCCCccchhHHHHHHHHHc-CC----CceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDF-------SSEVTAAL----RITDGALVVVDCIEGVCVQTETVLRQALG-ER----IRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df-------~~e~~~~l----~~~D~ailVvda~~gv~~~t~~~l~~~~~-~~----~p~ilviNK~D~~ 163 (843)
+++|||||..|- ..++..++ ...++++||+... ......+..++.... .+ .-.+|+++..|..
T Consensus 51 v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~ 129 (212)
T PF04548_consen 51 VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADEL 129 (212)
T ss_dssp EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGG
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccc
Confidence 999999997542 23344433 3478899999988 666666666665432 22 2467888988876
No 321
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=5.4e-06 Score=78.90 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=77.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.+.-.+.++|--|+|||||+..| +... .|. ..| |...+.-.+.. .
T Consensus 18 kK~gKllFlGLDNAGKTTLLHML--KdDr-----l~q-----hvP-------TlHPTSE~l~I----------------g 62 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHML--KDDR-----LGQ-----HVP-------TLHPTSEELSI----------------G 62 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHH--cccc-----ccc-----cCC-------CcCCChHHhee----------------c
Confidence 44567899999999999999887 1111 110 000 11111111112 2
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-H----HHHHHHHcCCCceEEEEEcCCcccccccCC
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-E----TVLRQALGERIRPVLTVNKMDRCFLELQVD 170 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~----~~l~~~~~~~~p~ilviNK~D~~~~~~~~~ 170 (843)
+.+++-+|.-||..-..-....+..+|++|++|||-+--..+. + .++....-.++|+++..||+|++ ++.
T Consensus 63 ~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p----~a~ 137 (193)
T KOG0077|consen 63 GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIP----YAA 137 (193)
T ss_pred CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCC----Ccc
Confidence 6788899999999877788888999999999999987443332 2 22222224679999999999999 775
No 322
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=85.91 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=71.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
+-.|+++|-+++|||||++++....-. ++...++ |+..+....... .+.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPK-----IadYpFT-----------TL~PnLGvV~~~---------------~~~ 207 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPK-----IADYPFT-----------TLVPNLGVVRVD---------------GGE 207 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCc-----ccCCccc-----------cccCcccEEEec---------------CCC
Confidence 457899999999999999998333222 2322222 333332222222 256
Q ss_pred EEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCCcc----chhHHHHHHHHHc-----CCCceEEEEEcCCc
Q 003169 99 LINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGV----CVQTETVLRQALG-----ERIRPVLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~gv----~~~t~~~l~~~~~-----~~~p~ilviNK~D~ 162 (843)
.+.+-|.||... +-.+.++.+..+-+.+.|||.+.-- ...-..++..+.+ .++|.++|+||||.
T Consensus 208 sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~ 287 (369)
T COG0536 208 SFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL 287 (369)
T ss_pred cEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCC
Confidence 799999999753 2333445556678889999998532 2222344443333 36799999999997
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
+
T Consensus 288 ~ 288 (369)
T COG0536 288 P 288 (369)
T ss_pred C
Confidence 6
No 323
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.22 E-value=7.4e-07 Score=93.48 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=36.6
Q ss_pred EEEEEcCCCCccchHHHHH------Hhh--ccCeEEEEEeCCCccchhHH---HH--HHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTA------ALR--ITDGALVVVDCIEGVCVQTE---TV--LRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~------~l~--~~D~ailVvda~~gv~~~t~---~~--l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.|+||||+.+|...... .+. ..=++|+++|+.---.+..- .+ +....+.++|.|.++||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc
Confidence 7899999999887654333 232 33468999999753332221 11 122345789999999999998
No 324
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.20 E-value=6.6e-06 Score=70.32 Aligned_cols=77 Identities=27% Similarity=0.270 Sum_probs=58.2
Q ss_pred EEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEec
Q 003169 377 MLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVG 456 (843)
Q Consensus 377 ~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~g 456 (843)
.++|++++.++..|. ++++||++|+|++|+.+++.+.. . ....+|.+|+... .+++++.|||++++.+
T Consensus 2 ~~~v~~~~~~~~~g~-v~~~rv~~G~l~~g~~v~~~~~~---~----~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~ 69 (83)
T cd01342 2 RALVFKVFKDKGRGT-VATGRVESGTLKKGDKVRVGPGG---G----GVKGKVKSLKRFK----GEVDEAVAGDIVGIVL 69 (83)
T ss_pred eeEEEEEEEeCCceE-EEEEEEeeCEEecCCEEEEecCC---c----eeEEEEeEeEecC----ceeceecCCCEEEEEE
Confidence 578888888776665 99999999999999999986421 1 1136888888764 6788999999999987
Q ss_pred cccccccce
Q 003169 457 LDQYITKNA 465 (843)
Q Consensus 457 l~~~~~~tg 465 (843)
.+....++|
T Consensus 70 ~~~~~~~~g 78 (83)
T cd01342 70 KDKDDIKIG 78 (83)
T ss_pred ccccccCCC
Confidence 554222555
No 325
>PTZ00258 GTP-binding protein; Provisional
Probab=98.20 E-value=5e-06 Score=92.60 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred ccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhcccccc
Q 003169 15 FKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGER 93 (843)
Q Consensus 15 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~ 93 (843)
....-..|+|+|.+|+|||||+++|.... ......+ +.|++.....+.+.... ..+..+..+.
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~p---------------ftTi~p~~g~v~~~d~r~~~l~~~~~~~ 80 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFP---------------FCTIDPNTARVNVPDERFDWLCKHFKPK 80 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCC---------------CCcccceEEEEecccchhhHHHHHcCCc
Confidence 34445689999999999999999993332 2211112 33555555444443110 0111111122
Q ss_pred CCCceEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCC
Q 003169 94 QGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCI 132 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~ 132 (843)
.....++.++||||... ........++.+|++++|||+.
T Consensus 81 ~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 81 SIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred ccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22245699999999653 4446778899999999999995
No 326
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.4e-06 Score=93.43 Aligned_cols=107 Identities=28% Similarity=0.333 Sum_probs=82.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..-++|+|++|+|||||+.+|+..- +.+.-.+.+--||+-+ ++..
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~-------------tk~ti~~i~GPiTvvs----------------------gK~R 113 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRF-------------TKQTIDEIRGPITVVS----------------------GKTR 113 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHH-------------HHhhhhccCCceEEee----------------------ccee
Confidence 3467899999999999999996542 1111112222234422 2467
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEE-EEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVL-TVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~il-viNK~D~~ 163 (843)
+|+|+.|| .| ...++.-...||.++|+||+.-|..-.|-+.+..+...+.|.++ |++.+|+.
T Consensus 114 RiTflEcp--~D-l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlf 176 (1077)
T COG5192 114 RITFLECP--SD-LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLF 176 (1077)
T ss_pred EEEEEeCh--HH-HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccc
Confidence 89999999 33 45677778899999999999999999999999999999999775 99999987
No 327
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.12 E-value=5.7e-06 Score=88.22 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhccccccCCCceEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYRGERQGNEYLI 100 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i 100 (843)
|+++|.+|+|||||.++|......+ ... .+.|++.....+.+.... ..+....++...-...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-~n~---------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-ANY---------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-ccc---------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 5899999999999999994433211 111 133555444444443100 00001111111123469
Q ss_pred EEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 101 NLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 101 ~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.++||||..+ +.......++.+|++++|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999653 34467778899999999999863
No 328
>PTZ00099 rab6; Provisional
Probab=98.12 E-value=8.5e-06 Score=81.67 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHc---CCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~---~~~p~ilviNK~D~~ 163 (843)
+...++||||||+..|.......++.+|++|+|+|+++..+.+....|. .+.. ..+|+++|.||+|+.
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 4678999999999999998899999999999999999865444433332 2221 356788999999986
No 329
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.11 E-value=1e-05 Score=83.39 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=69.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc--cCCce-EeecCcccccccccee---eeeeEEEEEeechhhhhccc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDV-RMTDTRQDEAERGITI---KSTGISLYYEMTDAALKSYR 90 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~--~~g~~-~~~D~~~~E~~rgiTi---~~~~~~~~~~~~~~~~~~~~ 90 (843)
..+++|+++|+.|+|||||+++|+...+...+. ..|.. .-.|....+ +.|..+ ..... ++.. ...+....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gci-c~~~--~~~~~~~l 95 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKE-CHLD--AHMVAHAL 95 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCc-ccCC--hHHHHHHH
Confidence 569999999999999999999999874321110 01110 011221111 222211 11100 0000 00000101
Q ss_pred cccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 91 GERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
......+..+.||+|.|....... .....+..+.|+|+.++..... +.....+.|.++++||+|+.
T Consensus 96 ~~~~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~ 161 (207)
T TIGR00073 96 EDLPLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLA 161 (207)
T ss_pred HHhccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHcc
Confidence 111112457889999993211111 1123456678999987654322 22233457889999999987
No 330
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=2.9e-05 Score=82.76 Aligned_cols=161 Identities=13% Similarity=0.189 Sum_probs=97.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc-------eEeecCccccccccceeeeeeEEEEEe---echhh-hh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD-------VRMTDTRQDEAERGITIKSTGISLYYE---MTDAA-LK 87 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~-------~~~~D~~~~E~~rgiTi~~~~~~~~~~---~~~~~-~~ 87 (843)
-.-|.++|+-..||||+++.|+...=- ....|- ..+|--..++.-.|-+.-...- ..+. ..++. +.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp--g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~-~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP--GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAK-KPFRGLNKFGNAFLN 134 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC--ccccCCCCCcceeEEEEecCcccccCCceeeecCC-CchhhhhhhHHHHHH
Confidence 346889999999999999999865311 111221 1123222222223322211100 0010 00011 11
Q ss_pred ccccc--cCCCceEEEEEcCCCC-----------ccchHHHHHHhhccCeEEEEEeCCC-ccchhHHHHHHHHHcCCCce
Q 003169 88 SYRGE--RQGNEYLINLIDSPGH-----------VDFSSEVTAALRITDGALVVVDCIE-GVCVQTETVLRQALGERIRP 153 (843)
Q Consensus 88 ~~~~~--~~~~~~~i~liDTPGh-----------~df~~e~~~~l~~~D~ailVvda~~-gv~~~t~~~l~~~~~~~~p~ 153 (843)
.+.+. ..+--.+|+||||||. -||.+-...-+..+|.++|+.|+-. .++..+.+++.+++...-++
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 11111 1112347999999996 3788888888889999999999975 67889999999998888889
Q ss_pred EEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhh
Q 003169 154 VLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVI 188 (843)
Q Consensus 154 ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (843)
-+|+||.|.. ++++..+.+-..+=.+..+
T Consensus 215 RVVLNKADqV------dtqqLmRVyGALmWslgkv 243 (532)
T KOG1954|consen 215 RVVLNKADQV------DTQQLMRVYGALMWSLGKV 243 (532)
T ss_pred EEEecccccc------CHHHHHHHHHHHHHhhhhh
Confidence 9999999966 5555554444444444433
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.10 E-value=1.2e-05 Score=88.62 Aligned_cols=97 Identities=23% Similarity=0.217 Sum_probs=59.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeec-hhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT-DAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 99 (843)
+|+++|.+|+|||||.++|.... ...... .+.|++.....+.+... ...+....++...-...
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~-~~v~ny---------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG-AEAANY---------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-Ceeccc---------------ccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 69999999999999999995433 111111 23355544444444310 00011111111222346
Q ss_pred EEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 100 INLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 100 i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
+.|+||||..+ +.......++.+|++++|||+.+
T Consensus 68 i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 68 IEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 99999999653 33457778899999999999964
No 332
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.09 E-value=2.7e-05 Score=73.04 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=82.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCCC
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+.-.|+++|.-++|||.+++.|++-++.+.....- ||+-.+ ++++.+ .+-
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~p----------------TiEDiY~~svet~-------------rga 58 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHP----------------TIEDIYVASVETD-------------RGA 58 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCcccc----------------chhhheeEeeecC-------------CCh
Confidence 34578999999999999999999987765432111 222221 222222 122
Q ss_pred ceEEEEEcCCCCccchHHH-HHHhhccCeEEEEEeCCCccchhHHHHHHHHH-----cCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQAL-----GERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~-~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~-----~~~~p~ilviNK~D~~ 163 (843)
...+.|-||.|..+...|. ...++.+|+.+||.|..+.-+.|-.+++..-. +..+|+++..||.|+.
T Consensus 59 rE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 59 REQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred hheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 4578899999999885554 44668999999999999877777666664322 3456888999999986
No 333
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.09 E-value=2.8e-06 Score=81.37 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=81.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
+....++|+|..++||||++.+.+ .|+..+.. .++--.|+. | |.|.+ ...
T Consensus 18 e~aiK~vivGng~VGKssmiqryC--kgifTkdy-kktIgvdfl--e--rqi~v-----------------------~~E 67 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYC--KGIFTKDY-KKTIGVDFL--E--RQIKV-----------------------LIE 67 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHh--cccccccc-ccccchhhh--h--HHHHh-----------------------hHH
Confidence 345588999999999999999873 34433321 100011211 1 11111 112
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH---HHHcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR---QALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~---~~~~~~~p~ilviNK~D~~ 163 (843)
+.++.+|||.|..+|..-+.+..|.|.+.+||.+.++-.+.....-|+ +..-.++|.+++-||+|+.
T Consensus 68 dvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv 137 (246)
T KOG4252|consen 68 DVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV 137 (246)
T ss_pred HHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh
Confidence 567789999999999999999999999999999999866555444443 3344689999999999987
No 334
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=9.2e-06 Score=90.02 Aligned_cols=135 Identities=18% Similarity=0.116 Sum_probs=76.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCc---ccccc------ccceeeeeeEEEEEeechhhhhc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTR---QDEAE------RGITIKSTGISLYYEMTDAALKS 88 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~D~~---~~E~~------rgiTi~~~~~~~~~~~~~~~~~~ 88 (843)
-.+++++|+.|+||||++..|....-.... ...+ ....|.. ..|+- .|+.+...... ..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~-lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~-------~~l~~ 208 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVA-LLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG-------GDLQL 208 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE-EEecccccccHHHHHHHHHHHcCCceEecCCc-------ccHHH
Confidence 468999999999999999999754311000 0011 1122322 11221 13322211000 00000
Q ss_pred cccccCCCceEEEEEcCCCCc---cchHHHHHHhhccCe---EEEEEeCCCccchhHHHHHHHHHcCCCce-------EE
Q 003169 89 YRGERQGNEYLINLIDSPGHV---DFSSEVTAALRITDG---ALVVVDCIEGVCVQTETVLRQALGERIRP-------VL 155 (843)
Q Consensus 89 ~~~~~~~~~~~i~liDTPGh~---df~~e~~~~l~~~D~---ailVvda~~gv~~~t~~~l~~~~~~~~p~-------il 155 (843)
.. ..-.++.+.||||||.. ++..+....+..++. .+||++|+.+....+..++.+....++|. =+
T Consensus 209 ~l--~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 209 AL--AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred HH--HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEE
Confidence 00 01135688999999977 455566666655554 49999999988777777766655444432 37
Q ss_pred EEEcCCcc
Q 003169 156 TVNKMDRC 163 (843)
Q Consensus 156 viNK~D~~ 163 (843)
+++|+|-.
T Consensus 287 I~TKlDEt 294 (374)
T PRK14722 287 ILTKLDEA 294 (374)
T ss_pred EEeccccC
Confidence 78999965
No 335
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.04 E-value=1.4e-05 Score=82.54 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=79.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...+++.|..|+|||+|++.++........ +.. .-|.|-. +.... .+.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t---~k~----------K~g~Tq~---in~f~----------------v~~ 183 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADT---SKS----------KNGKTQA---INHFH----------------VGK 183 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhh---cCC----------CCcccee---eeeee----------------ccc
Confidence 347999999999999999999654332211 100 1122221 11111 266
Q ss_pred EEEEEcCCCC----------ccchHHHHHHh---hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGH----------VDFSSEVTAAL---RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh----------~df~~e~~~~l---~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.++|.||+ .||..-+..++ +..=-+.+.+|++-++++-+...+..+.+.++|..+|+||||+.
T Consensus 184 ~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 184 SWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred eEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 8999999993 24444444444 34445789999999999999999999999999999999999987
No 336
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.00 E-value=2.1e-05 Score=85.80 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=40.7
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.||||||...- ....+..+|.++++.+...|-.-+. + ... -.++|.++++||+|+.
T Consensus 125 ~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~--~-~~~-l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 125 AGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQG--I-KAG-LMEIADIYVVNKADGE 185 (300)
T ss_pred CCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHH--H-HHH-HhhhccEEEEEccccc
Confidence 4788999999996532 2335678899888865543322111 1 111 2467889999999988
No 337
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.98 E-value=0.0001 Score=85.42 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=65.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
..+|+++|.+|+|||||+|+|+.......... ..+ |.........+. +.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~--------------~~~-TTr~~ei~~~id----------------G~ 166 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAF--------------GMG-TTSVQEIEGLVQ----------------GV 166 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCC--------------CCC-ceEEEEEEEEEC----------------Cc
Confidence 46899999999999999999976643322210 011 111111122222 67
Q ss_pred EEEEEcCCCCccch------HH----HHHHhh--ccCeEEEEEeCCCc-cchhHHHHHHHHH---cCC--CceEEEEEcC
Q 003169 99 LINLIDSPGHVDFS------SE----VTAALR--ITDGALVVVDCIEG-VCVQTETVLRQAL---GER--IRPVLTVNKM 160 (843)
Q Consensus 99 ~i~liDTPGh~df~------~e----~~~~l~--~~D~ailVvda~~g-v~~~t~~~l~~~~---~~~--~p~ilviNK~ 160 (843)
.+++|||||..+.. .+ +...+. ..|++|+|.....- ........++... ..+ .-.||+++..
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThg 246 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHA 246 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCC
Confidence 89999999988642 22 222333 37888877765321 1112333343332 122 2478899999
Q ss_pred Ccc
Q 003169 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|..
T Consensus 247 D~l 249 (763)
T TIGR00993 247 ASA 249 (763)
T ss_pred ccC
Confidence 977
No 338
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=4.7e-05 Score=70.07 Aligned_cols=115 Identities=21% Similarity=0.138 Sum_probs=73.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
|..-.|+|..|+|||.|+-.+....-..+ -| .||-....+-..+ ..+...
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmad------------cp------htigvefgtriie------------vsgqki 60 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD------------CP------HTIGVEFGTRIIE------------VSGQKI 60 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhc------------CC------cccceecceeEEE------------ecCcEE
Confidence 66778999999999999988843321100 00 0111111010111 123467
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHcCCCc---eEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGERIR---PVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~~~~p---~ilviNK~D~~ 163 (843)
++.+|||.|+.+|..-+.+..|.+-||++|.|.+..-......-|. -+...-.| ++++.||.|+.
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 8999999999999999999999999999999998644333333332 22222233 55788999986
No 339
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.94 E-value=0.00012 Score=79.14 Aligned_cols=126 Identities=20% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
..-.||-++|..|.||||+++.|+...- .+. . .+.+..+.-.+.++.|......+.- ++-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~--~---~~~~~~~~~~~~~~~i~~~~~~l~e--------------~~~ 80 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDE--T---EIDDIRAEGTSPTLEIKITKAELEE--------------DGF 80 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCC--C---CccCcccccCCcceEEEeeeeeeec--------------CCe
Confidence 3446999999999999999999987721 111 0 0111111113344445444333322 123
Q ss_pred ceEEEEEcCCCCccchHH--------------HHHHh-------h-------ccCeEEEEEeCC-CccchhHHHHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSSE--------------VTAAL-------R-------ITDGALVVVDCI-EGVCVQTETVLRQAL 147 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e--------------~~~~l-------~-------~~D~ailVvda~-~gv~~~t~~~l~~~~ 147 (843)
...+|+|||||..||... -..++ | ..++|++-+-++ .|+.+.....++.+
T Consensus 81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l- 159 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL- 159 (373)
T ss_pred EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH-
Confidence 567999999999886432 11111 1 256899888875 58888888887765
Q ss_pred cCCCceEEEEEcCCcc
Q 003169 148 GERIRPVLTVNKMDRC 163 (843)
Q Consensus 148 ~~~~p~ilviNK~D~~ 163 (843)
...+-+|=||-|.|..
T Consensus 160 s~~vNlIPVI~KaD~l 175 (373)
T COG5019 160 SKRVNLIPVIAKADTL 175 (373)
T ss_pred hcccCeeeeeeccccC
Confidence 3446777899999965
No 340
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.91 E-value=3e-05 Score=84.74 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCc----cch---HHHHHHhhccCeEEEEEeCCC
Q 003169 97 EYLINLIDSPGHV----DFS---SEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~----df~---~e~~~~l~~~D~ailVvda~~ 133 (843)
...+.|+||||.. .+. ......++.||++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 4679999999973 333 356678999999999999974
No 341
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.90 E-value=3.7e-05 Score=86.65 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=55.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEee--chhhhhcccc------c
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM--TDAALKSYRG------E 92 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~--~~~~~~~~~~------~ 92 (843)
+|+++|.+++|||||+++|....-.+ + ++ -+.|++.......... ....+....+ .
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~-----~-----~y------~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~ 66 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEI-----A-----NY------PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCI 66 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccc-----c-----CC------CCcceeeeeeeeeeccCCchhhhhhhhcccccccc
Confidence 69999999999999999995432111 0 11 0123333222211100 0000000000 0
Q ss_pred cCCCceEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 93 RQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.......++++||||..+ ......+.++.||++++|||+..
T Consensus 67 ~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 67 DGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred CCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 112246789999999642 33467788999999999999974
No 342
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.87 E-value=0.00012 Score=63.72 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=57.7
Q ss_pred CeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE
Q 003169 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 375 p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
||.++|..++..+ .|. +..+||.+|++++||.|++++.+ . ..+|.+|.. +..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~-~g~-vv~G~v~~G~i~~Gd~v~i~P~~----~-----~~~V~si~~----~~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQ-GGT-VVSGKVESGSIQKGDTLLVMPSK----E-----SVEVKSIYV----DDEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcC-CCc-EEEEEEeeeEEeCCCEEEEeCCC----c-----EEEEEEEEE----CCeECCEECCCCEEEE
Confidence 5777777777656 665 88999999999999999987532 1 257888764 3478999999999985
Q ss_pred --eccccccccce-eee
Q 003169 455 --VGLDQYITKNA-TLT 468 (843)
Q Consensus 455 --~gl~~~~~~tg-TL~ 468 (843)
.+++....+.| +|+
T Consensus 66 ~l~~~~~~~v~~G~vl~ 82 (83)
T cd03698 66 KLKGIDEEDISPGDVLC 82 (83)
T ss_pred EECCCCHHHCCCCCEEe
Confidence 45543333556 554
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.84 E-value=6.8e-05 Score=72.86 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
.++.+.||||||.. ..+...++.||-+++|+....+- ...+.+ ......--+++|||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D---~y~~~k-~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGD---DIQAIK-AGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchh---HHHHhh-hhHhhhcCEEEEeCCC
Confidence 37889999999965 34456899999999999876322 222222 1233445689999998
No 344
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.82 E-value=0.00014 Score=64.49 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=63.3
Q ss_pred CCCeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEE
Q 003169 373 EGPLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTV 452 (843)
Q Consensus 373 ~~p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv 452 (843)
+.||.+.|..++.....|. +..+||.+|+++.||+|+++..+ . ..+|.+|.. +..++++|.|||.+
T Consensus 2 ~~p~r~~V~~vf~~~g~g~-vv~G~v~~G~i~~gd~v~i~P~~-----~----~~~V~sI~~----~~~~~~~a~aG~~v 67 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGT-VPVGRVETGVLKPGMVVTFAPAG-----V----TGEVKSVEM----HHEPLEEALPGDNV 67 (91)
T ss_pred CCCeEEEEEEEEEeCCceE-EEEEEEecceeecCCEEEECCCC-----c----EEEEEEEEE----CCcCcCEECCCCEE
Confidence 3688899998887666675 88999999999999999987532 1 268888874 34568899999999
Q ss_pred EEe--ccccccccce-eeecCC
Q 003169 453 AMV--GLDQYITKNA-TLTNEK 471 (843)
Q Consensus 453 ~i~--gl~~~~~~tg-TL~~~~ 471 (843)
++. +++....+.| .||+.+
T Consensus 68 ~i~l~~i~~~~v~~G~vl~~~~ 89 (91)
T cd03693 68 GFNVKNVSKKDIKRGDVAGDSK 89 (91)
T ss_pred EEEECCCCHHHcCCcCEEccCC
Confidence 875 5444334567 666543
No 345
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.82 E-value=0.00032 Score=70.36 Aligned_cols=66 Identities=23% Similarity=0.180 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..+.+.+||||+... ..+..++..+|.+++|+.+...-.......++.+...+.|..+++||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 478899999997653 366778899999999999987655667788888888888888999999965
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.80 E-value=0.00011 Score=73.25 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCccchHHHHHHh------hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAAL------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l------~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.+|||||...+..+....+ ...|++++|+|+..+.... ..++++....+ ..-+++||+|..
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCC-CCEEEEECCcCC
Confidence 456788999999874433333222 2489999999997543222 33444433444 245788999976
No 347
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0004 Score=75.76 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=77.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-.++-++|..|.|||||+|.|+...- .+...+ +....+..+..++....+.+.- ++-..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l------~~~~~~-~~~~~~~~~t~~i~~~~~~iee--------------~g~~l 79 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDL------SGNREV-PGASERIKETVEIESTKVEIEE--------------NGVKL 79 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhc------cCCccc-CCcccCccccceeeeeeeeecC--------------CCeEE
Confidence 36899999999999999999976621 111111 2222233333344433332221 22356
Q ss_pred EEEEEcCCCCccchHH--------------HHHHh-----------h--ccCeEEEEEeCC-CccchhHHHHHHHHHcCC
Q 003169 99 LINLIDSPGHVDFSSE--------------VTAAL-----------R--ITDGALVVVDCI-EGVCVQTETVLRQALGER 150 (843)
Q Consensus 99 ~i~liDTPGh~df~~e--------------~~~~l-----------~--~~D~ailVvda~-~gv~~~t~~~l~~~~~~~ 150 (843)
.+++|||||..|+... -..++ . ..++|++-|..+ .|+.+.....++.. ..+
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l-~~~ 158 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL-SKK 158 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH-hcc
Confidence 7899999999875321 11111 1 467899999876 46888888777665 445
Q ss_pred CceEEEEEcCCcc
Q 003169 151 IRPVLTVNKMDRC 163 (843)
Q Consensus 151 ~p~ilviNK~D~~ 163 (843)
+.+|-||-|.|..
T Consensus 159 vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 159 VNLIPVIAKADTL 171 (366)
T ss_pred ccccceeeccccC
Confidence 7788899999955
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=0.0007 Score=68.53 Aligned_cols=125 Identities=21% Similarity=0.215 Sum_probs=71.1
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
---.||.++|.+|.|||||++.|... ++.++ .+ .|... |+-+. |++...++-... .++-
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s-~v~~~--s~----~~~~~-~p~pk-T~eik~~thvie------------E~gV 102 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKS-HVSDS--SS----SDNSA-EPIPK-TTEIKSITHVIE------------EKGV 102 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHH-HHhhc--cC----CCccc-Ccccc-eEEEEeeeeeee------------ecce
Confidence 34579999999999999999998543 33332 11 12111 22221 222222222222 1223
Q ss_pred ceEEEEEcCCCCccchH---------------------HHHHHh---h----ccCeEEEEEeCCC-ccchhHHHHHHHHH
Q 003169 97 EYLINLIDSPGHVDFSS---------------------EVTAAL---R----ITDGALVVVDCIE-GVCVQTETVLRQAL 147 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~---------------------e~~~~l---~----~~D~ailVvda~~-gv~~~t~~~l~~~~ 147 (843)
..++++|||||+.|++. +-.... + ...+|++-|.++. ...+-+.+.++.+.
T Consensus 103 klkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt 182 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT 182 (336)
T ss_pred EEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh
Confidence 56899999999887532 111111 1 2567888888763 34566666655442
Q ss_pred cCCCceEEEEEcCCcc
Q 003169 148 GERIRPVLTVNKMDRC 163 (843)
Q Consensus 148 ~~~~p~ilviNK~D~~ 163 (843)
+ -+-++-||-|.|-.
T Consensus 183 ~-vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTL 197 (336)
T ss_pred h-hheeeeeEeecccc
Confidence 2 24456688999976
No 349
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.76 E-value=1.4e-05 Score=77.87 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+|+|+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999997653
No 350
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=5.6e-05 Score=71.27 Aligned_cols=67 Identities=27% Similarity=0.200 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHH----HcCCCceEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQA----LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~----~~~~~p~ilviNK~D~~ 163 (843)
...+.||||.|++.|.+.+.+-.|.|-|.+++.|-+..-+.-..+-| .|+ .-++--++++.||.|+.
T Consensus 66 rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 66 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE 137 (219)
T ss_pred EEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh
Confidence 45688999999999999999999999999999999865444333334 232 22333477899999988
No 351
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.71 E-value=1.5e-05 Score=72.74 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=56.5
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHH---cCCCceEEEEEcCCcc
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~---~~~~p~ilviNK~D~~ 163 (843)
+++..++.+|||.|+++|.+-+.+..|.+|+.+++.|....-+...-..|- +.. +..+.+.++.||+|..
T Consensus 43 ~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 43 DDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred CCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 456789999999999999999999999999999999998766666555552 333 3446677899999985
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.70 E-value=5.6e-05 Score=74.21 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
..+|+++|.+|+|||||+|+|+......
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~ 129 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK 129 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee
Confidence 4579999999999999999997654433
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.69 E-value=7.9e-05 Score=77.40 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=72.9
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhc---Cc------ccc--ccCCceEeecCccc---cccccceeeee
Q 003169 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA---GI------IAQ--EVAGDVRMTDTRQD---EAERGITIKST 73 (843)
Q Consensus 8 ~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~---g~------i~~--~~~g~~~~~D~~~~---E~~rgiTi~~~ 73 (843)
-+..+.....+-..|+|.|++|+|||||+++|.... |. ++. ...|..-.-|.... ....|+=|.+.
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSM 97 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeec
Confidence 345555555566789999999999999999997542 11 011 01111111121111 11122222211
Q ss_pred eEEEEEeechhhhhccccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH--HHHHHHHcCCC
Q 003169 74 GISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERI 151 (843)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~--~~l~~~~~~~~ 151 (843)
...=....-.........-.+.-++.+.||-|-|-..---+ -...+|..++|+-+..|-..|.. -+++.+
T Consensus 98 atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia----- 169 (266)
T PF03308_consen 98 ATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIA----- 169 (266)
T ss_dssp ---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH------
T ss_pred CcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhc-----
Confidence 10000000000000000112224678999999997653222 25689999999999887766653 444443
Q ss_pred ceEEEEEcCCcc
Q 003169 152 RPVLTVNKMDRC 163 (843)
Q Consensus 152 p~ilviNK~D~~ 163 (843)
=|+|+||.|+.
T Consensus 170 -Di~vVNKaD~~ 180 (266)
T PF03308_consen 170 -DIFVVNKADRP 180 (266)
T ss_dssp -SEEEEE--SHH
T ss_pred -cEEEEeCCChH
Confidence 38999999988
No 354
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=8.7e-05 Score=69.06 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhcc
Q 003169 10 RRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSY 89 (843)
Q Consensus 10 ~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 89 (843)
..+.... +--+|-++|-.|+||||+.-++ . .|+...+- -|+.-+..++.|
T Consensus 10 ~~L~g~e-~e~rililgldGaGkttIlyrl--q--------vgevvttk---------Ptigfnve~v~y---------- 59 (182)
T KOG0072|consen 10 KALQGPE-REMRILILGLDGAGKTTILYRL--Q--------VGEVVTTK---------PTIGFNVETVPY---------- 59 (182)
T ss_pred HHhcCCc-cceEEEEeeccCCCeeEEEEEc--c--------cCcccccC---------CCCCcCcccccc----------
Confidence 3344433 3346889999999999988766 1 23211110 022222233333
Q ss_pred ccccCCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH--HHHHHHHHc---CCCceEEEEEcCCcc
Q 003169 90 RGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT--ETVLRQALG---ERIRPVLTVNKMDRC 163 (843)
Q Consensus 90 ~~~~~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t--~~~l~~~~~---~~~p~ilviNK~D~~ 163 (843)
++.+++++|.-|.-....-+.......|.+|+|||+.+--.-.. .++...+.+ .+..+++|.||+|..
T Consensus 60 ------KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~ 132 (182)
T KOG0072|consen 60 ------KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYS 132 (182)
T ss_pred ------ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccch
Confidence 37889999999999999999999999999999999987433222 222222222 244677899999988
No 355
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.67 E-value=0.00012 Score=74.69 Aligned_cols=139 Identities=17% Similarity=0.145 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc---cccccceeeeeeEEEEEee---ch-hhhhccccc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD---EAERGITIKSTGISLYYEM---TD-AALKSYRGE 92 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~---E~~rgiTi~~~~~~~~~~~---~~-~~~~~~~~~ 92 (843)
+.|+++|+.|+||||.+-.|-...... ....+ .-.+|.... |+-+-..-... +.+.... +. ..+......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~-lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVA-LISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EE-EEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccce-eecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHH
Confidence 468999999999999999996654322 11122 123343322 11111000000 1111000 00 000000111
Q ss_pred cCCCceEEEEEcCCCCccchHH----HHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 93 RQGNEYLINLIDSPGHVDFSSE----VTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e----~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
...+++.+.||||||......+ +..-+ ...+-++||+||+.+-.... .+.......++. =++++|+|-.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~-~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE-QALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH-HHHHHHHHSSTC-EEEEESTTSS
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH-HHHHHhhcccCc-eEEEEeecCC
Confidence 1223567899999997755433 22222 24677899999997643322 443443334444 4569999965
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.66 E-value=0.00024 Score=80.11 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCccch----HHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~----~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.++.+.||||||..... .|+....+ ..|-++||+||.-|-.. ....+...+.--+--+++||+|-.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 36789999999976443 33333222 36789999999866333 122222222212455899999965
No 357
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.64 E-value=0.00027 Score=69.52 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=67.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcc----ccccCCceEeecCccccccccc-eeeeeeEEEEEeechhhhhcc---ccc
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGII----AQEVAGDVRMTDTRQDEAERGI-TIKSTGISLYYEMTDAALKSY---RGE 92 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i----~~~~~g~~~~~D~~~~E~~rgi-Ti~~~~~~~~~~~~~~~~~~~---~~~ 92 (843)
-+.++|..|+|||||+++++...... -....|... .|...... .+. .+.....-++....+.....+ ...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~-~d~~~~~~-~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~ 79 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVG-IDNQLVVD-TDEEIIEMNNGCICCTVRGDLIRALLDLLER 79 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccc-hhHHHHhC-CCceEEEeCCCEeEeeCchhHHHHHHHHHHH
Confidence 36799999999999999998653110 001123211 11111110 111 111111111111111111111 011
Q ss_pred --cCCCceEEEEEcCCCCccchHH--------HHHHhhccCeEEEEEeCCCccchh--HHHHHHHHHcCCCceEEEEEcC
Q 003169 93 --RQGNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQ--TETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 93 --~~~~~~~i~liDTPGh~df~~e--------~~~~l~~~D~ailVvda~~gv~~~--t~~~l~~~~~~~~p~ilviNK~ 160 (843)
.......+.+|||||..+-..- ...+.-.+|+++.|||+....... ......|+... =++++||+
T Consensus 80 ~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~ 156 (158)
T cd03112 80 LDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKT 156 (158)
T ss_pred HHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecc
Confidence 1123456789999998753222 223445689999999997543211 12223343322 36799999
Q ss_pred Cc
Q 003169 161 DR 162 (843)
Q Consensus 161 D~ 162 (843)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 95
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.64 E-value=0.00041 Score=75.97 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=69.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEe--ecCcc---------ccccccceeeeeeEEEEEeech--hh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRQ---------DEAERGITIKSTGISLYYEMTD--AA 85 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~D~~~---------~E~~rgiTi~~~~~~~~~~~~~--~~ 85 (843)
...|+++|+.|+||||++..|...... . .+++.+ .|... ....+|+.+-.. ....+. ..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~--~--g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~----~~~~dpa~~v 185 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA--Q--GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ----KEGADPASVA 185 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh--c--CCeEEEEecCccchhhHHHHHHHHHHcCceEEEe----CCCCCHHHHH
Confidence 468999999999999999999654321 1 122222 23211 012334332111 011010 00
Q ss_pred hhccccccCCCceEEEEEcCCCCccc----hHHHHHHhh--------ccCeEEEEEeCCCccchhHHHHHHHHHcC--CC
Q 003169 86 LKSYRGERQGNEYLINLIDSPGHVDF----SSEVTAALR--------ITDGALVVVDCIEGVCVQTETVLRQALGE--RI 151 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTPGh~df----~~e~~~~l~--------~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~ 151 (843)
...+. ....+++.+.||||||.... +.|.....+ ..+..++|+||+.|-.... ++... ..
T Consensus 186 ~~~l~-~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~~~~ 259 (318)
T PRK10416 186 FDAIQ-AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFHEAV 259 (318)
T ss_pred HHHHH-HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHHhhC
Confidence 11111 11224678999999997643 334443333 3567899999996543222 22222 22
Q ss_pred -ceEEEEEcCCcc
Q 003169 152 -RPVLTVNKMDRC 163 (843)
Q Consensus 152 -p~ilviNK~D~~ 163 (843)
+.-+++||+|..
T Consensus 260 ~~~giIlTKlD~t 272 (318)
T PRK10416 260 GLTGIILTKLDGT 272 (318)
T ss_pred CCCEEEEECCCCC
Confidence 345899999954
No 359
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.62 E-value=0.00015 Score=68.81 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=74.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccc---ccCCceEeecCcc--ccccccceeeeeeEEEEEeechhhhhccccccC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ---EVAGDVRMTDTRQ--DEAERGITIKSTGISLYYEMTDAALKSYRGERQ 94 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~---~~~g~~~~~D~~~--~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
.+..++|..-+|||+|+..+ ..|.... ...| .|+.. .|.+ .
T Consensus 9 frlivigdstvgkssll~~f--t~gkfaelsdptvg----vdffarlie~~----------------------------p 54 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTVG----VDFFARLIELR----------------------------P 54 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccccCCCccc----hHHHHHHHhcC----------------------------C
Confidence 35778999999999999987 3333222 1111 11110 1111 1
Q ss_pred CCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc--CC---Cc-eEEEEEcCCcc
Q 003169 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ER---IR-PVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~--~~---~p-~ilviNK~D~~ 163 (843)
+...++.||||.|++.|.+-+.+..|.+-|+++|.|.+..-.......|-.-.+ .+ .+ ..+|..|.|+.
T Consensus 55 g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 55 GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 235688999999999999999999999999999999998666655555532212 12 23 33689999987
No 360
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.61 E-value=0.00031 Score=75.34 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCC-ceEe--ecCcc---cc------ccccceeeeeeEEEEEeechhh
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRM--TDTRQ---DE------AERGITIKSTGISLYYEMTDAA 85 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~--~D~~~---~E------~~rgiTi~~~~~~~~~~~~~~~ 85 (843)
+.+.|+++|+.|+||||++-.|..... + .| ++.. .|... .| ..+|+.+... ....+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~----~~~~dp~~ 141 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---K--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ----KEGADPAA 141 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---h--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC----CCCCCHHH
Confidence 357899999999999999999964431 1 22 1222 23211 11 2233222100 00000000
Q ss_pred --hhccccccCCCceEEEEEcCCCCccchHHHHH-------Hhh-----ccCeEEEEEeCCCccchhHHHHHHHHHcCCC
Q 003169 86 --LKSYRGERQGNEYLINLIDSPGHVDFSSEVTA-------ALR-----ITDGALVVVDCIEGVCVQTETVLRQALGERI 151 (843)
Q Consensus 86 --~~~~~~~~~~~~~~i~liDTPGh~df~~e~~~-------~l~-----~~D~ailVvda~~gv~~~t~~~l~~~~~~~~ 151 (843)
...+ .....+++.+.||||||.......... ... ..|..++|+|+..|-. +........+ .+
T Consensus 142 ~~~~~l-~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~-~~ 217 (272)
T TIGR00064 142 VAFDAI-QKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNE-AV 217 (272)
T ss_pred HHHHHH-HHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHh-hC
Confidence 0000 011124678999999998754333222 222 3899999999975422 2211111111 12
Q ss_pred -ceEEEEEcCCcc
Q 003169 152 -RPVLTVNKMDRC 163 (843)
Q Consensus 152 -p~ilviNK~D~~ 163 (843)
+.-+++||+|-.
T Consensus 218 ~~~g~IlTKlDe~ 230 (272)
T TIGR00064 218 GLTGIILTKLDGT 230 (272)
T ss_pred CCCEEEEEccCCC
Confidence 345899999965
No 361
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.59 E-value=0.00011 Score=73.11 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+++++|.+|+|||||+|+|+....
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc
Confidence 4799999999999999999965443
No 362
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00022 Score=78.82 Aligned_cols=135 Identities=15% Similarity=0.146 Sum_probs=67.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCcc---ccccccc--eeeeeeEEEEEeechhhhhccccc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQ---DEAERGI--TIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~---~E~~rgi--Ti~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
.+.|+++|+.|+||||++..|..... ... ..+ ....|... .|+-+.. ... +.+....+...+......
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVg-lI~aDt~RiaAvEQLk~yae~lg---ipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVG-FITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEE-EEecCCcchHHHHHHHHHhhhcC---CcEEecCCHHHHHHHHHH
Confidence 47899999999999999999964321 000 011 11223221 1111110 011 111111111111111111
Q ss_pred -cCCCceEEEEEcCCCCccc----hHHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCC-Cc-eEEEEEcCCcc
Q 003169 93 -RQGNEYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 93 -~~~~~~~i~liDTPGh~df----~~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p-~ilviNK~D~~ 163 (843)
....++.+.||||||.... ..+....+. ..|-.+||+||+.+- ..+..++..++ ++ -=++++|+|-.
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~----~d~~~i~~~F~~~~idglI~TKLDET 390 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 390 (436)
T ss_pred HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh----HHHHHHHHHhcCCCCCEEEEEcccCC
Confidence 1112567899999997543 334444432 356789999986432 22223333322 33 23789999965
No 363
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.55 E-value=0.00026 Score=80.18 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
+|+++|.-|+|||||+-+|+...-.-.- .+..+ -|+|-.... ......
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~~V-----P~rl~--------~i~IPadvt-------------------Pe~vpt 58 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVDAV-----PRRLP--------RILIPADVT-------------------PENVPT 58 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccccc-----cccCC--------ccccCCccC-------------------cCcCce
Confidence 5999999999999999999765432100 01111 134432111 124458
Q ss_pred EEEcCCCCccchHHHHHHhhccCeEEEEEeCCC-----ccchhHHHHHHHHH--cCCCceEEEEEcCCcc
Q 003169 101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----GVCVQTETVLRQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 101 ~liDTPGh~df~~e~~~~l~~~D~ailVvda~~-----gv~~~t~~~l~~~~--~~~~p~ilviNK~D~~ 163 (843)
.++||+...+-...+..-++.||++++|.++++ +++..=.-++++.. ..++|+|+|.||+|..
T Consensus 59 ~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 59 SIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred EEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 899999888877788899999999999998775 23222234445442 2568999999999987
No 364
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.55 E-value=0.00022 Score=71.80 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-|+|.++|..|+|||++=..+...-.+-+ -++-|-||+....++.+- .+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D---------------~~rlg~tidveHsh~Rfl---------------Gnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD---------------TRRLGATIDVEHSHVRFL---------------GNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh---------------hhccCCcceeeehhhhhh---------------hhh
Confidence 46899999999999998766643221111 122344666555555443 257
Q ss_pred EEEEEcCCCCccchHHHHH-----HhhccCeEEEEEeCCCccchhHHHHH----HHHHcC--CCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTA-----ALRITDGALVVVDCIEGVCVQTETVL----RQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~-----~l~~~D~ailVvda~~gv~~~t~~~l----~~~~~~--~~p~ilviNK~D~~ 163 (843)
.+|++|+.|+..|+....+ .++..++.+.|.|+...-...+.... +...+. ..++++++.|||+.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv 129 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLV 129 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhc
Confidence 8999999999988766544 56789999999999764333222222 222222 33567899999998
No 365
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00025 Score=69.30 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=79.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNE 97 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
.++.++++|..+.||||..++.+. |-... .---|+....-.+.+. .+.+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt--geFe~----------------~y~at~Gv~~~pl~f~------------tn~g~ 58 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT--GEFEK----------------TYPATLGVEVHPLLFD------------TNRGQ 58 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc--cccee----------------cccCcceeEEeeeeee------------cccCc
Confidence 478999999999999999998842 11111 1111333222222222 11225
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH--HH-HcCCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR--QA-LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~--~~-~~~~~p~ilviNK~D~~ 163 (843)
.+++.+||.|.+.|.+.-....-.+-+|+++.|...-+..+...-|. .+ ...++|++++.||.|-.
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~ 127 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIK 127 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecc
Confidence 89999999999999877777777888999999998777666644443 12 23468999999999965
No 366
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.50 E-value=0.00038 Score=77.40 Aligned_cols=114 Identities=23% Similarity=0.232 Sum_probs=65.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee-EEEEEeechhhhhccccccCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG-ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~~~~~~ 95 (843)
.+.|++.++|-+|+|||++++.+.... ..+-.+ -+|.++-. .++. .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad----------vevqpY-------aFTTksL~vGH~d----------------y 212 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD----------DEVQPY-------AFTTKLLLVGHLD----------------Y 212 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc----------cccCCc-------ccccchhhhhhhh----------------h
Confidence 467999999999999999888762111 111111 12222211 1222 2
Q ss_pred CceEEEEEcCCCCccch--------HHHHHHhhcc-CeEEEEEeCCC--ccchhHH-HHHHHHH--cCCCceEEEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFS--------SEVTAALRIT-DGALVVVDCIE--GVCVQTE-TVLRQAL--GERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~--------~e~~~~l~~~-D~ailVvda~~--gv~~~t~-~~l~~~~--~~~~p~ilviNK~D 161 (843)
+-..|.+|||||.-|=- ...++||... -++++++|-++ |.+.... .+..... -.+.|.|+|+||+|
T Consensus 213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D 292 (620)
T KOG1490|consen 213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKID 292 (620)
T ss_pred heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeeccc
Confidence 34578999999976522 1233444332 34678888875 3332222 1222221 24788999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 293 ~m 294 (620)
T KOG1490|consen 293 AM 294 (620)
T ss_pred cc
Confidence 87
No 367
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.00036 Score=79.38 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCccchHHH------HHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCce-EEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEV------TAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRP-VLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~------~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~-ilviNK~D~~ 163 (843)
+.+.||||||......+. ..++..+|.+++|+||..|- ..++++..+ .+++ -+++||+|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 478999999977654432 33455789999999998762 223344333 2444 3789999954
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.44 E-value=0.0002 Score=70.04 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
...+++++|++|+|||||+++|+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc
Confidence 456899999999999999999976543
No 369
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.41 E-value=0.00046 Score=71.95 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
.++.-|+|+|+.++|||||+|+|+...... .+.+. .....+||-+-... +. .+.
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f--------~~~~~-~~~~T~gi~~~~~~----~~-------------~~~ 58 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGF--------DVMDT-SQQTTKGIWMWSVP----FK-------------LGK 58 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCe--------EecCC-CCCCccceEEEecc----cc-------------CCC
Confidence 567789999999999999999996652111 11111 01222344322111 00 123
Q ss_pred ceEEEEEcCCCCccc------hHHHHHHhhc--cCeEEEEEeCCC
Q 003169 97 EYLINLIDSPGHVDF------SSEVTAALRI--TDGALVVVDCIE 133 (843)
Q Consensus 97 ~~~i~liDTPGh~df------~~e~~~~l~~--~D~ailVvda~~ 133 (843)
+..+.++||||..+- ......++.. +|..|+.+++..
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 578999999997653 2234555555 999888888753
No 370
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.41 E-value=0.0014 Score=56.81 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=48.6
Q ss_pred CeEEEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEE
Q 003169 375 PLMLYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAM 454 (843)
Q Consensus 375 p~~a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i 454 (843)
||.+.|..++... |. +..+||.+|++++||.|++.+.+ . ..+|.+|.. ...++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~--g~-vv~G~v~~G~i~~G~~v~i~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM--GT-VVLGKVESGTIKKGDKLLVMPNK-----T----QVEVLSIYN----EDVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC--CE-EEEEEEeeeEEecCCEEEEeCCC-----c----EEEEEEEEE----CCEECCEECCCCEEEE
Confidence 4566666665432 54 88999999999999999986532 1 257888764 2467999999999988
Q ss_pred e
Q 003169 455 V 455 (843)
Q Consensus 455 ~ 455 (843)
.
T Consensus 65 ~ 65 (82)
T cd04089 65 R 65 (82)
T ss_pred E
Confidence 5
No 371
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.38 E-value=0.0018 Score=64.63 Aligned_cols=63 Identities=22% Similarity=0.144 Sum_probs=49.3
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~ 163 (843)
.+.+|||||..+. ....++..+|.+|+|+++...-...+...++.+...+.+ ..+++|++|..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 6889999986554 567789999999999999876666666676776666665 45899999865
No 372
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.38 E-value=0.00034 Score=71.48 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce--EEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP--VLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~--ilviNK~D~~ 163 (843)
.....+|+|-|.. ...... -..+|++|+|+|+.++...+.. ...++.. ++++||+|+.
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLA 150 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhcc
Confidence 3456789999932 111111 1236999999999987653321 1123444 8999999987
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.00087 Score=76.90 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=66.0
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEe--ecCcc---ccccccceeeeeeEEEEEeechhhhhccccc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRM--TDTRQ---DEAERGITIKSTGISLYYEMTDAALKSYRGE 92 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~--~D~~~---~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~ 92 (843)
.-.+|+++|+.|+||||++..|......-.. ...+.+ +|... .|+-+...-.. .+.+........+......
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~--gkkVaLIdtDtyRigA~EQLk~ya~iL-gv~v~~a~d~~~L~~aL~~ 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHA--PRDVALVTTDTQRVGGREQLHSYGRQL-GIAVHEADSAESLLDLLER 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEecccccccHHHHHHHhhccc-CceeEecCcHHHHHHHHHH
Confidence 3468999999999999999999653211000 011222 23211 11111000000 0011111111111111111
Q ss_pred cCCCceEEEEEcCCCCccchHHHH------HHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 93 RQGNEYLINLIDSPGHVDFSSEVT------AALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~~e~~------~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++.+.||||||......... .+.. ....++|+++..+..... .+++..... .+.-+++||+|..
T Consensus 426 --l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 426 --LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred --hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 1357899999999754332211 1222 345688999886533332 233332222 3456899999975
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.36 E-value=0.00027 Score=68.06 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..++++|.+|+|||||+++|+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999654
No 375
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.34 E-value=0.00028 Score=71.51 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+++++|.+|+|||||+|+|+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998754
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.34 E-value=0.00029 Score=78.80 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=61.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
-+++.++|.+|+|||||+|+|+.......+ ..+.. ...|.|.....+ .. +.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~----~~~~s------~~pgtT~~~~~~--~~-----------------~~ 204 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKD----VITTS------PFPGTTLDLIEI--PL-----------------DD 204 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcc----eeeec------CCCCeEeeEEEE--Ee-----------------CC
Confidence 368999999999999999999876432111 00111 123455543222 12 22
Q ss_pred EEEEEcCCCCccchHHHHHHh-----------hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSEVTAAL-----------RITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l-----------~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+.++||||..... ++...+ .......+.+|....+......-+......+..+.++++|-+..
T Consensus 205 ~~~l~DtPG~~~~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 205 GHSLYDTPGIINSH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred CCEEEECCCCCChh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 35799999986432 111111 23455666676654322221111111222344566788888876
No 377
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.34 E-value=0.0002 Score=71.78 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=71.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..++|+|...+|||.|+-.+ .++.......- ++.|+. .+.+... +++...
T Consensus 5 ~K~VvVGDga~GKT~ll~~~--t~~~fp~~yvP--TVFdny-------------s~~v~V~-------------dg~~v~ 54 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISY--TTNAFPEEYVP--TVFDNY-------------SANVTVD-------------DGKPVE 54 (198)
T ss_pred eEEEEECCCCcCceEEEEEe--ccCcCcccccC--eEEccc-------------eEEEEec-------------CCCEEE
Confidence 57899999999999998655 33322221111 111211 0111110 245778
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhH-HHHH-HHHH--cCCCceEEEEEcCCcc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVL-RQAL--GERIRPVLTVNKMDRC 163 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t-~~~l-~~~~--~~~~p~ilviNK~D~~ 163 (843)
+.||||.|+.||..-..-+.+.+|.++++.+.++.-.... ..-| .... .-++|+|+|.+|.|+.
T Consensus 55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 9999999999997744457789999998888765443332 1112 1111 2478999999999976
No 378
>PRK10867 signal recognition particle protein; Provisional
Probab=97.33 E-value=0.00087 Score=76.15 Aligned_cols=63 Identities=27% Similarity=0.396 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCccc----hHHHHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHc--CCCce-EEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDF----SSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALG--ERIRP-VLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df----~~e~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~--~~~p~-ilviNK~D~~ 163 (843)
.++.+.||||||.... ..++.... ...|.+++|+|+..| | ...+++.. ..+++ -+++||+|-.
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~~ 253 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDGD 253 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 4577999999996533 22222222 246788999999743 2 22233332 23443 3788999954
No 379
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.31 E-value=0.00072 Score=76.77 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCccchHHHHHH------hhccCeEEEEEeCCCccchhHHHHHHHHHc--CCCceE-EEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAA------LRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~------l~~~D~ailVvda~~gv~~~t~~~l~~~~~--~~~p~i-lviNK~D~~ 163 (843)
+++.+.||||||........... ....|.+++|+|+..| + ....++.. ..+++. +++||+|-.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q--~~~~~a~~f~~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---Q--DAVNTAKTFNERLGLTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---H--HHHHHHHHHHhhCCCCEEEEeCccCc
Confidence 45678999999965433322222 2347889999999754 2 22233322 234433 789999944
No 380
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00049 Score=75.85 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=21.8
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.+.|+++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999654
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=97.29 E-value=0.00097 Score=73.35 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCccc----hHHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcC--CCc-eEEEEEcCCcc
Q 003169 97 EYLINLIDSPGHVDF----SSEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGE--RIR-PVLTVNKMDRC 163 (843)
Q Consensus 97 ~~~i~liDTPGh~df----~~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p-~ilviNK~D~~ 163 (843)
++.+.||||||.... ..+...-.+ ..|..++|+|+..|- ..++++..+ .++ --+++||+|..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 456999999998643 333322222 478899999997652 223333322 133 45789999975
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.0003 Score=77.90 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++++|++|+|||||+|+|+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 479999999999999999976543
No 383
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.23 E-value=0.0007 Score=66.24 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=24.0
Q ss_pred HhhcccCCeeEEEEEeCCCCCHHHHHHHHHH
Q 003169 11 RIMDFKHNIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 11 ~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+++.......+++++|.+++|||||+++|+.
T Consensus 93 ~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 93 ELAKIDGKEGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred HHHhhcCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3333334566889999999999999999963
No 384
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0042 Score=71.91 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=83.5
Q ss_pred HHHHhhccc-CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccc------------cCCc--eEeecCcccccccccee--
Q 003169 8 ELRRIMDFK-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE------------VAGD--VRMTDTRQDEAERGITI-- 70 (843)
Q Consensus 8 ~~~~~~~~~-~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~------------~~g~--~~~~D~~~~E~~rgiTi-- 70 (843)
.+..++... ...-.|+|.|..++||||++|+||...-.-... ..|. +..+|.. .|...-.|+
T Consensus 97 ~l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~ 175 (749)
T KOG0448|consen 97 KLDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQ 175 (749)
T ss_pred HHHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhH
Confidence 344444432 334589999999999999999999874322110 0111 1111110 011111111
Q ss_pred ------------eeeeEEEEEeechhhhhccccccCCCceEEEEEcCCCCc---cchHHHHHHhhccCeEEEEEeCCCcc
Q 003169 71 ------------KSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHV---DFSSEVTAALRITDGALVVVDCIEGV 135 (843)
Q Consensus 71 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~---df~~e~~~~l~~~D~ailVvda~~gv 135 (843)
..+.+.+.|+.+ .++.- ...+.+||.||.. .+..++..-.-.+|..|+|+.|-.-.
T Consensus 176 ~~haL~~~~~~~~~sLlrV~~p~~-------~csLL--rnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntl 246 (749)
T KOG0448|consen 176 LAHALKPDKDLGAGSLLRVFWPDD-------KCSLL--RNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTL 246 (749)
T ss_pred HHHhcCcccccCcceEEEEEecCc-------cchhh--hccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHh
Confidence 122333344311 01111 1268899999964 57777888888999999999997655
Q ss_pred chhHHHHHHHHHcCCCce-EEEEEcCCcc
Q 003169 136 CVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
Q Consensus 136 ~~~t~~~l~~~~~~~~p~-ilviNK~D~~ 163 (843)
+-.....+..+... +|- +++.||+|..
T Consensus 247 t~sek~Ff~~vs~~-KpniFIlnnkwDas 274 (749)
T KOG0448|consen 247 TLSEKQFFHKVSEE-KPNIFILNNKWDAS 274 (749)
T ss_pred HHHHHHHHHHhhcc-CCcEEEEechhhhh
Confidence 44444555555444 774 4678899987
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.18 E-value=0.00062 Score=72.00 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|++|+|||||+|+|+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 478999999999999999997653
No 386
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.17 E-value=0.00096 Score=70.59 Aligned_cols=114 Identities=24% Similarity=0.209 Sum_probs=72.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
...|+++|-.|+|||||+++|. .+....+.. -...+|. |..+ .. -+++.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT-~Aal~p~dr--LFATLDp---------T~h~----a~---------------Lpsg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALT-KAALYPNDR--LFATLDP---------TLHS----AH---------------LPSGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHH-hhhcCccch--hheeccc---------hhhh----cc---------------CCCCc
Confidence 4589999999999999999996 333222210 0112221 1111 11 12467
Q ss_pred EEEEEcCCCCcc-ch-------HHHHHHhhccCeEEEEEeCCCcc-chhHHHHHHHHHcCCCce-------EEEEEcCCc
Q 003169 99 LINLIDSPGHVD-FS-------SEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRP-------VLTVNKMDR 162 (843)
Q Consensus 99 ~i~liDTPGh~d-f~-------~e~~~~l~~~D~ailVvda~~gv-~~~t~~~l~~~~~~~~p~-------ilviNK~D~ 162 (843)
.+.+.||-|+.. +- ..+..-...+|..+-|+|.+... ..|-..++.-+...++|. |=|=||+|.
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~ 306 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDY 306 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccc
Confidence 889999999752 22 23444456799999999999865 456677888777888862 225577776
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 307 e 307 (410)
T KOG0410|consen 307 E 307 (410)
T ss_pred c
Confidence 5
No 387
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.15 E-value=0.0013 Score=63.34 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCcc
Q 003169 113 SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
Q Consensus 113 ~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~ 163 (843)
+++..++..+|++++|+|+.++...+...+.+.+... ++|+++++||+|+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~ 55 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLL 55 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcC
Confidence 5788999999999999999998888877777777655 88999999999975
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.14 E-value=0.00048 Score=76.37 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.++|+|++|+|||||+|+|+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 489999999999999999975543
No 389
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0023 Score=67.63 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=48.9
Q ss_pred CCCceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH--HHHHHHHcCCCceEEEEEcCCcccccccCCH
Q 003169 94 QGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGERIRPVLTVNKMDRCFLELQVDG 171 (843)
Q Consensus 94 ~~~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~--~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~ 171 (843)
+.-++-+.||-|-|-..-.-++ ...+|..++|.=+..|-..|.. -+++.+ =|+||||+|+. ++.
T Consensus 140 dAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD~~----~A~- 205 (323)
T COG1703 140 DAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKADRK----GAE- 205 (323)
T ss_pred HhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccChh----hHH-
Confidence 3347788999999976533222 3478999998888777766664 333443 38999999988 653
Q ss_pred HHHHHHHHHHHH
Q 003169 172 EEAYQTFQKVIE 183 (843)
Q Consensus 172 ~~~~~~~~~~~~ 183 (843)
.++..++..++
T Consensus 206 -~a~r~l~~al~ 216 (323)
T COG1703 206 -KAARELRSALD 216 (323)
T ss_pred -HHHHHHHHHHH
Confidence 33444444443
No 390
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.12 E-value=0.0041 Score=59.66 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC--CCceEEEEEcCCcccccccCCHHHHH
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE--RIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~--~~p~ilviNK~D~~~~~~~~~~~~~~ 175 (843)
+.+.+||||+..+ .....++..+|.+++|+++...-...+...++.+... ..++.+++|+++.. . ..++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~----~-~~~~~~ 117 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP----K-EGKKVF 117 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH----H-HHHHHH
Confidence 5688999998654 4557889999999999999754444455555554332 34566899999854 2 234455
Q ss_pred HHHHHHHH
Q 003169 176 QTFQKVIE 183 (843)
Q Consensus 176 ~~~~~~~~ 183 (843)
+++.+..+
T Consensus 118 ~~~~~~~~ 125 (139)
T cd02038 118 KRLSNVSN 125 (139)
T ss_pred HHHHHHHH
Confidence 55555444
No 391
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.12 E-value=0.003 Score=69.10 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=83.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC----ccccccCCceEee--cCccccccccceeeeeeEEEEEee-chhhhhccccc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAG----IIAQEVAGDVRMT--DTRQDEAERGITIKSTGISLYYEM-TDAALKSYRGE 92 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~--D~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~~~~~~ 92 (843)
+...+-|--|||||||+++||.+.. ++--.+.|+.-.. +.....-+.=..+...++-+.... .-..+..+..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~- 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR- 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh-
Confidence 4567889999999999999998765 1111134432222 111111111112222222111110 0111122222
Q ss_pred cCCCceEEEEEcCCCCccc-------hH-HHHHHhhccCeEEEEEeCCCccchhH---HHHHHHHHcCCCceEEEEEcCC
Q 003169 93 RQGNEYLINLIDSPGHVDF-------SS-EVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df-------~~-e~~~~l~~~D~ailVvda~~gv~~~t---~~~l~~~~~~~~p~ilviNK~D 161 (843)
..+ .....+|-|-|..+= .. ...+..-..|++|-||||........ .....|+... =++++||.|
T Consensus 81 ~~~-~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~D 156 (323)
T COG0523 81 RRD-RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTD 156 (323)
T ss_pred ccC-CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEeccc
Confidence 222 266778999997653 22 23334446789999999997655433 3333444322 378999999
Q ss_pred cccccccCCHHHHHHHHHHHHHHhhh
Q 003169 162 RCFLELQVDGEEAYQTFQKVIENANV 187 (843)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (843)
+. .. ++ .+.++..+.++|.
T Consensus 157 lv----~~--~~-l~~l~~~l~~lnp 175 (323)
T COG0523 157 LV----DA--EE-LEALEARLRKLNP 175 (323)
T ss_pred CC----CH--HH-HHHHHHHHHHhCC
Confidence 88 43 33 5566666666654
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.11 E-value=0.00079 Score=72.94 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
+.++++|+.|+|||||+++|+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 679999999999999999996543
No 393
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.09 E-value=0.0017 Score=67.98 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH------HcCCCceEEEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA------LGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~------~~~~~p~ilviNK~D 161 (843)
.++.+.||||||+.+ ..+..++..||.+|+.+.++.--...+...+... ...++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999875 5577889999999999887643332333333222 134667779999987
No 394
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0014 Score=71.40 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEee-chhhhhc-cccccCCCc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEM-TDAALKS-YRGERQGNE 97 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 97 (843)
.+++|+|-+|+|||||.++|...... ++...+ .||+.+........ .-..+.+ +.++..-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~-----~aNYPF-----------~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~ 66 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAE-----IANYPF-----------CTIEPNVGVVYVPDCRLDELAEIVKCPPKIRP 66 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCcc-----ccCCCc-----------ccccCCeeEEecCchHHHHHHHhcCCCCcEEe
Confidence 37899999999999999999554421 111111 14444433333221 0011111 122233345
Q ss_pred eEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.|+|.+|-+. +-...+.-+|.+|+++.||||.+
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 6799999999753 45567888999999999999984
No 395
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.08 E-value=0.00079 Score=72.59 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++++|.+|+|||||+|+|+..
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999654
No 396
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.06 E-value=0.00083 Score=72.81 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
..+++++|.+|+|||||+|+|+...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~ 145 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKK 145 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999996543
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.05 E-value=0.00084 Score=71.57 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHH
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
+..+++|++|+|||||+|+|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 3678999999999999999965
No 398
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.04 E-value=0.0023 Score=70.83 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=60.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC-ccccccCCceEeecCccccccccceeeeeeEEEEEeec-hhhhhccccccCCCc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAG-IIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMT-DAALKSYRGERQGNE 97 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 97 (843)
.+++|+|.+++|||||.++|..... .+ +... -.|+......+.+... ...+..+.++.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-----a~yp-----------ftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-----ANPP-----------FTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-----CCCC-----------CCCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 4789999999999999999944432 11 1000 0133333333333211 011112222333345
Q ss_pred eEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 98 YLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 98 ~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
..+.++|.||... +.....+.+|.+|+.+.|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 5789999999754 55578889999999999999964
No 399
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.04 E-value=0.001 Score=73.21 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g 52 (843)
.+++++|-+|+|||||+|+|+....+.....+|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG 165 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG 165 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCc
Confidence 469999999999999999998777655444444
No 400
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.04 E-value=0.0043 Score=54.38 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred EEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--cc
Q 003169 380 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GL 457 (843)
Q Consensus 380 VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl 457 (843)
|-.++..+..|. +..+||.+|++++||.++++..+. + .....+|..|.. +..++++|.|||.+++. ++
T Consensus 5 I~~vf~v~g~Gt-Vv~G~v~~G~v~~g~~v~~~P~~~--g---~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i 74 (87)
T cd03694 5 IDEIYSVPGVGT-VVGGTVSKGVIRLGDTLLLGPDQD--G---SFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKI 74 (87)
T ss_pred EEeEEEcCCcce-EEEEEEecCEEeCCCEEEECCCCC--C---CEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCC
Confidence 333333345565 889999999999999999864210 1 112367888764 46778999999998874 44
Q ss_pred ccccccce
Q 003169 458 DQYITKNA 465 (843)
Q Consensus 458 ~~~~~~tg 465 (843)
+....+.|
T Consensus 75 ~~~~i~~G 82 (87)
T cd03694 75 DRSLLRKG 82 (87)
T ss_pred CHHHcCCc
Confidence 33323444
No 401
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.00099 Score=74.60 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=37.4
Q ss_pred CceEEEEEcCCCCccchHH----HHHHhhc-----cCeEEEEEeCCCccchhHHHHHHHHHcCCCc-eEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSE----VTAALRI-----TDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e----~~~~l~~-----~D~ailVvda~~gv~~~t~~~l~~~~~~~~p-~ilviNK~D~~ 163 (843)
.++.+.||||||+.....+ +..-++. ..-.+||+||+.|.... ..+.+.- ..++ -=++++|+|-.
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 4677899999998643332 2222222 22578999998753222 2222221 2233 33789999965
No 402
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.01 E-value=0.0023 Score=68.47 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+.-|.++|.+|+|||||+++|+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999875
No 403
>PRK13796 GTPase YqeH; Provisional
Probab=96.99 E-value=0.0012 Score=74.13 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=27.5
Q ss_pred HHHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 6 AEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 6 ~~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.+.+.+.+.....-+++.++|.+|+|||||+|+|+...
T Consensus 147 I~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 147 IDELLEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhc
Confidence 34444444332334689999999999999999998653
No 404
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.99 E-value=0.0012 Score=65.84 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
..+++++|.+++|||||+++|+..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999654
No 405
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.98 E-value=0.0028 Score=59.92 Aligned_cols=115 Identities=19% Similarity=0.260 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
..|+++|....|||||+-....... | ..-++..|+..--..+++. +-+..
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~-------------d-e~~~q~~GvN~mdkt~~i~----------------~t~Is 70 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY-------------D-EEYTQTLGVNFMDKTVSIR----------------GTDIS 70 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh-------------H-HHHHHHhCccceeeEEEec----------------ceEEE
Confidence 4799999999999999977632211 0 1112233332222222221 12567
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHH-HHHHcCCCc--eEEEEEcCCccc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGERIR--PVLTVNKMDRCF 164 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l-~~~~~~~~p--~ilviNK~D~~~ 164 (843)
+.++|.-|..+|....--|-..+-+++++.|-+..-......-| +||...+.- +|++.+|.|..+
T Consensus 71 fSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 71 FSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred EEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhh
Confidence 88999999999988877777778888999999875555444444 788877663 678999999873
No 406
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=96.97 E-value=0.0038 Score=54.72 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=51.2
Q ss_pred EEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe--cc
Q 003169 380 VSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV--GL 457 (843)
Q Consensus 380 VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~--gl 457 (843)
|..++..+..|. +..+||.+|+++.||.|.+++.+. .. ..+|.+|.. +..++++|.|||-+++. ++
T Consensus 5 V~~v~~~~g~G~-vv~G~v~~G~v~~gd~v~~~p~~~--~~-----~~~V~si~~----~~~~~~~a~~G~~v~l~l~~~ 72 (87)
T cd03697 5 IEDVFSIPGRGT-VVTGRIERGTIKVGDEVEIVGFGE--TL-----KTTVTGIEM----FRKTLDEAEAGDNVGVLLRGV 72 (87)
T ss_pred EEEEEeCCCcEE-EEEEEECCCCCccCCEEEEeCCCC--Cc-----eEEEEEEEE----CCcCCCEECCCCEEEEEECCC
Confidence 333333345564 789999999999999999875321 11 257888764 35678999999999885 44
Q ss_pred ccccccce-eeec
Q 003169 458 DQYITKNA-TLTN 469 (843)
Q Consensus 458 ~~~~~~tg-TL~~ 469 (843)
+......| .|++
T Consensus 73 ~~~~v~rG~vl~~ 85 (87)
T cd03697 73 KREDVERGMVLAK 85 (87)
T ss_pred CHHHcCCccEEec
Confidence 33223445 4554
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0017 Score=73.45 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-..|+++|+.|+||||++..|...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998654
No 408
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.93 E-value=0.0012 Score=67.20 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=57.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-+|+++|-+.+|||||+..+...... +....++ |.......+.|+ +..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-----aA~yeFT-----------TLtcIpGvi~y~----------------ga~ 110 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-----AASYEFT-----------TLTCIPGVIHYN----------------GAN 110 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-----hhceeee-----------EEEeecceEEec----------------Cce
Confidence 47999999999999999998332211 1111111 333333444554 788
Q ss_pred EEEEcCCCCccc-------hHHHHHHhhccCeEEEEEeCCCc
Q 003169 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 134 (843)
Q Consensus 100 i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~g 134 (843)
|.++|.||...= -.++.+..|.||.+++|+||+.+
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 999999998642 23577788999999999999864
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.89 E-value=0.0025 Score=65.09 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=46.9
Q ss_pred CCceEEEEEcC-CCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC-ceEEEEEcCCcc
Q 003169 95 GNEYLINLIDS-PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI-RPVLTVNKMDRC 163 (843)
Q Consensus 95 ~~~~~i~liDT-PGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~-p~ilviNK~D~~ 163 (843)
.+.+.+.++|| .|..-|.. ...+.+|.+|+|+|++-.--.-.+++-+.+.+.++ ++.+++||+|..
T Consensus 131 ~~~~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 131 LNRYEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 34567888898 45555553 33467899999999986444445667777888885 566899999944
No 410
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.84 E-value=0.0072 Score=55.11 Aligned_cols=59 Identities=17% Similarity=0.045 Sum_probs=43.8
Q ss_pred EEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCC----ceEEEEEc
Q 003169 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERI----RPVLTVNK 159 (843)
Q Consensus 99 ~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~----p~ilviNK 159 (843)
.+.+||||+..+. ....++..+|.+++|+++...-...+...++.+.+.+. +..+++|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5789999997653 45678899999999999987656666666666555443 45578885
No 411
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=96.84 E-value=0.0076 Score=52.26 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=46.3
Q ss_pred EEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 378 LYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
+.|..++..+..|. +..+||.+|++++|+++.+++.+ . ..+|.+|.. +..++++|.|||-+++.
T Consensus 3 ~~i~~~~~~~~~g~-vv~G~v~sG~i~~g~~v~~~p~~-----~----~~~V~sI~~----~~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 3 LPIDRVFTVKGQGT-VVTGTVLSGSVKVGDKVEILPLG-----E----ETRVRSIQV----HGKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEEcCCcEE-EEEEEEeecEEeCCCEEEECCCC-----c----eEEEEEEEE----CCcCcCEEcCCCEEEEE
Confidence 34444444344554 88999999999999999986522 1 257888764 35678999999999884
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.83 E-value=0.0039 Score=66.54 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=65.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccc---cc--cccceeeeeeEEEEEeechhhhhccccc-
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQD---EA--ERGITIKSTGISLYYEMTDAALKSYRGE- 92 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~---E~--~rgiTi~~~~~~~~~~~~~~~~~~~~~~- 92 (843)
...++++|..|+||||++..|...... .....| ....|.... ++ ...-.+. +.+....+...+......
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~-~~~~v~-~i~~D~~ri~~~~ql~~~~~~~~---~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVG-FITTDHSRIGTVQQLQDYVKTIG---FEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEE-EEecCCCCHHHHHHHHHHhhhcC---ceEEecCCHHHHHHHHHHH
Confidence 368999999999999999988654210 000011 112232210 00 0000011 111110111111111110
Q ss_pred cCCCceEEEEEcCCCCccch----HHHHHHhh--ccCeEEEEEeCCCccchhHHHHHHHHHcCC-Cc-eEEEEEcCCcc
Q 003169 93 RQGNEYLINLIDSPGHVDFS----SEVTAALR--ITDGALVVVDCIEGVCVQTETVLRQALGER-IR-PVLTVNKMDRC 163 (843)
Q Consensus 93 ~~~~~~~i~liDTPGh~df~----~e~~~~l~--~~D~ailVvda~~gv~~~t~~~l~~~~~~~-~p-~ilviNK~D~~ 163 (843)
....++.+.||||||..... .++...++ ..|-.+||+||+.+- .....++..++ ++ -=++++|+|-.
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~----~d~~~~~~~f~~~~~~~~I~TKlDet 224 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS----KDMIEIITNFKDIHIDGIVFTKFDET 224 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH----HHHHHHHHHhCCCCCCEEEEEeecCC
Confidence 11235688999999987443 33333332 345689999997432 12222333322 33 33789999965
No 413
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.0039 Score=71.13 Aligned_cols=131 Identities=17% Similarity=0.187 Sum_probs=65.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCC-ceEeecCccc-----cc------cccceeeeeeEEEEEeechhhh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQD-----EA------ERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~D~~~~-----E~------~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
-++++++|+.|+||||++-.|........ .| .+.+.+.++. |+ ..|+.+... .. ...+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~-----~~--~~~l 290 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV-----YD--PKEL 290 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEcc-----CC--HHhH
Confidence 35899999999999999999855432000 11 1222222221 11 112211110 00 0000
Q ss_pred hccccccCCCceEEEEEcCCCCccch----HHHHHHhh---ccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEc
Q 003169 87 KSYRGERQGNEYLINLIDSPGHVDFS----SEVTAALR---ITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 159 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df~----~e~~~~l~---~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK 159 (843)
..... .-.++.+.||||||+..+. .++...+. .-+-+.+|++++.+. .....+++.....++ --++++|
T Consensus 291 ~~~l~--~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TK 366 (424)
T PRK05703 291 AKALE--QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTK 366 (424)
T ss_pred HHHHH--HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEec
Confidence 00000 1125688999999986553 23333333 223568999997532 122333343332222 2488999
Q ss_pred CCcc
Q 003169 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|-.
T Consensus 367 lDet 370 (424)
T PRK05703 367 LDET 370 (424)
T ss_pred cccc
Confidence 9965
No 414
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.78 E-value=0.0015 Score=63.99 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=40.3
Q ss_pred HHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc--CCCceEEEEEcCCcc
Q 003169 115 VTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 115 ~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~--~~~p~ilviNK~D~~ 163 (843)
+.+++..+|.+++|+|+.++...+...+.+.+.. .++|+|+++||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 5678999999999999998877767666666544 348999999999986
No 415
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.76 E-value=0.0059 Score=60.63 Aligned_cols=66 Identities=18% Similarity=0.052 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCccchHHHHHHh--hccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAAL--RITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l--~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
.++.+.++|||+..+ ......+ ..+|.+++|+.+..--...+...++.+.+.+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999999753 3334343 68999999998876666677788888888888876 789999864
No 416
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.72 E-value=0.0051 Score=70.68 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.++++|+.|+||||++..|...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999754
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.0044 Score=68.77 Aligned_cols=153 Identities=17% Similarity=0.173 Sum_probs=79.4
Q ss_pred HHHHHHhhcc-c-------CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeec-Cccc--cccccceeeeee
Q 003169 6 AEELRRIMDF-K-------HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTD-TRQD--EAERGITIKSTG 74 (843)
Q Consensus 6 ~~~~~~~~~~-~-------~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D-~~~~--E~~rgiTi~~~~ 74 (843)
.++|.+++.. . .+.-.|-++|--|+||||.+..|-.+-.. ....++ ....| ++|. ||-+...-....
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvl-lVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVL-LVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceE-EEecccCChHHHHHHHHHHHHcCC
Confidence 4667777773 1 22346889999999999999999654322 110111 11122 2221 221111111111
Q ss_pred EEEEEe--echh-hhhccccccCCCceEEEEEcCCCCccc----hHHHH--HHhhccCeEEEEEeCCCccchhHHHHHHH
Q 003169 75 ISLYYE--MTDA-ALKSYRGERQGNEYLINLIDSPGHVDF----SSEVT--AALRITDGALVVVDCIEGVCVQTETVLRQ 145 (843)
Q Consensus 75 ~~~~~~--~~~~-~~~~~~~~~~~~~~~i~liDTPGh~df----~~e~~--~~l~~~D~ailVvda~~gv~~~t~~~l~~ 145 (843)
-.|... .++. ..+.-........+.+.||||.|.... ..|+. ...-.-|=+++|+||.-| |...-...
T Consensus 157 ~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~ 233 (451)
T COG0541 157 PFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAK 233 (451)
T ss_pred ceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHH
Confidence 111111 0010 011111122334578999999996543 33322 233457789999999854 44433344
Q ss_pred HHcCCCceE-EEEEcCCcc
Q 003169 146 ALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 146 ~~~~~~p~i-lviNK~D~~ 163 (843)
+....+++- ++++|+|-.
T Consensus 234 aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 234 AFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHhhhcCCceEEEEcccCC
Confidence 445567765 799999954
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.0096 Score=66.87 Aligned_cols=133 Identities=18% Similarity=0.165 Sum_probs=67.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc---eEeecCcc---ccc------cccceeeeeeEEEEEeechhhh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD---VRMTDTRQ---DEA------ERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~---~~~~D~~~---~E~------~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
.+.|+++|+.|+||||++..|.......... .|. .-..|... .|+ .-|+.+ ........+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-------~~~~~~~~l 245 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-------KAIESFKDL 245 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHHHHHHhhcCCcce-------EeeCcHHHH
Confidence 4689999999999999999986542211000 111 11223211 111 112221 111000111
Q ss_pred hccccccCCCceEEEEEcCCCCccc----hHHHHHHhhcc--C-eEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEc
Q 003169 87 KSYRGERQGNEYLINLIDSPGHVDF----SSEVTAALRIT--D-GALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNK 159 (843)
Q Consensus 87 ~~~~~~~~~~~~~i~liDTPGh~df----~~e~~~~l~~~--D-~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK 159 (843)
..... .-+++.+.||||||.... ..++...+..+ + -.+||+||+.+..... .+++.....+ +-=++++|
T Consensus 246 ~~~L~--~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TK 321 (388)
T PRK12723 246 KEEIT--QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTK 321 (388)
T ss_pred HHHHH--HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEe
Confidence 11111 114678999999997532 23444444433 3 4789999988733332 3333322211 23478999
Q ss_pred CCcc
Q 003169 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|-.
T Consensus 322 lDet 325 (388)
T PRK12723 322 LDET 325 (388)
T ss_pred ccCC
Confidence 9965
No 419
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.63 E-value=0.012 Score=53.14 Aligned_cols=81 Identities=26% Similarity=0.239 Sum_probs=52.7
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCccccccCC-ceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 22 MSVIA-HVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 22 I~iiG-~~~~GKTTL~~~Ll~~~g~i~~~~~g-~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
|++.| ..|+||||++-.|...... .| .+...|.++ .+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~-----------------------------------~~d 41 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDP-----------------------------------QYD 41 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCC-----------------------------------CCC
Confidence 56666 5799999999988554321 12 122333222 145
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHH
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR 144 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~ 144 (843)
+.+||||+..+- ....++..+|.+++++++...-......+++
T Consensus 42 ~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 42 YIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred EEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 789999997653 4558889999999999987543334444433
No 420
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.59 E-value=0.0033 Score=61.42 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 114 EVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 114 e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.....++.+|++++|+|+.++...+...+.+.+...++|+++++||+|+.
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 44556677999999999998877777767666666789999999999986
No 421
>PRK00098 GTPase RsgA; Reviewed
Probab=96.56 E-value=0.0029 Score=68.97 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.++++|++|+|||||+++|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999654
No 422
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.55 E-value=0.0083 Score=67.87 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
..+++|+|+|+.++|||||+++|....|..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999998876654
No 423
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.55 E-value=0.0032 Score=63.19 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=44.8
Q ss_pred ceEEEEEcCCCCccchHH-----HHHHhhccCeEEEEEeCCCccc-hhH-HHHHHHHHcCCCceEEEEEcCCcccccccC
Q 003169 97 EYLINLIDSPGHVDFSSE-----VTAALRITDGALVVVDCIEGVC-VQT-ETVLRQALGERIRPVLTVNKMDRCFLELQV 169 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e-----~~~~l~~~D~ailVvda~~gv~-~~t-~~~l~~~~~~~~p~ilviNK~D~~~~~~~~ 169 (843)
+..+.||-|.|..+...- .....-..+.+|.|||+..-.. ... ..+..|. ..-=++++||.|+. .
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~ADvIvlnK~D~~----~- 155 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AFADVIVLNKIDLV----S- 155 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT-SEEEEE-GGGH----H-
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hhcCEEEEeccccC----C-
Confidence 345678999997654332 2222345789999999954211 111 2222333 23347899999987 2
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 003169 170 DGEEAYQTFQKVIENANV 187 (843)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (843)
.++..+++++.+.++|.
T Consensus 156 -~~~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 156 -DEQKIERVREMIRELNP 172 (178)
T ss_dssp -HH--HHHHHHHHHHH-T
T ss_pred -hhhHHHHHHHHHHHHCC
Confidence 22234567777766663
No 424
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.55 E-value=0.0077 Score=64.45 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=64.7
Q ss_pred hhcccCCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeech-hhhhccc
Q 003169 12 IMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTD-AALKSYR 90 (843)
Q Consensus 12 ~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~ 90 (843)
+|....+...++|+|-+++||||+.++|....-. ++...+. ||+...+.....+.. ..+..+.
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~-----~~NfPF~-----------TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAG-----AANFPFC-----------TIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCCC-----ccCCCcc-----------eeccccceeecCchHHHHHHHhc
Confidence 4455555568999999999999999999433211 2222222 444433333222100 1111122
Q ss_pred cccCCCceEEEEEcCCCCcc-------chHHHHHHhhccCeEEEEEeCCC
Q 003169 91 GERQGNEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~d-------f~~e~~~~l~~~D~ailVvda~~ 133 (843)
.+.....-.+++.|..|-.. +-...++-+|.+|+++-||+|.+
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 22333456899999999653 44457788899999999999975
No 425
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.49 E-value=0.0073 Score=66.44 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc-----------chhHHHHHHHHHc----CCCceEEEEEcC
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV-----------CVQTETVLRQALG----ERIRPVLTVNKM 160 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv-----------~~~t~~~l~~~~~----~~~p~ilviNK~ 160 (843)
++..+.++|++|+......+......++++++|||.++-- .......++.+.. .+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 3778999999999999999999999999999999998631 1223334443332 468999999999
Q ss_pred Ccc
Q 003169 161 DRC 163 (843)
Q Consensus 161 D~~ 163 (843)
|+.
T Consensus 239 D~f 241 (317)
T cd00066 239 DLF 241 (317)
T ss_pred HHH
Confidence 976
No 426
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=96.45 E-value=0.018 Score=49.75 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=40.0
Q ss_pred eEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 393 FAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 393 l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
...+||.+|+++.||+|++++.+ . ..+|..+.. +..+++.|.|||.+++.
T Consensus 17 ~v~Gkv~~G~v~~Gd~v~~~P~~-----~----~~~V~si~~----~~~~~~~a~aGd~v~l~ 66 (81)
T cd03695 17 GYAGTIASGSIRVGDEVVVLPSG-----K----TSRVKSIET----FDGELDEAGAGESVTLT 66 (81)
T ss_pred EEEEEEccceEECCCEEEEcCCC-----C----eEEEEEEEE----CCcEeCEEcCCCEEEEE
Confidence 68999999999999999987532 1 257888864 34678999999999884
No 427
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.45 E-value=0.0075 Score=66.83 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=68.2
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCcc-ccccCCceEeecCccc---ccc------ccceeeeeeEEEEEeechhhhh
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQD---EAE------RGITIKSTGISLYYEMTDAALK 87 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~g~~~~~D~~~~---E~~------rgiTi~~~~~~~~~~~~~~~~~ 87 (843)
+.|.|+++|+.|+||||.+-.|-...... .+...| .-.+|+... ||- -|+++... +. ...+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-iITtDtYRIGA~EQLk~Ya~im~vp~~vv-----~~--~~el~ 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-IITTDTYRIGAVEQLKTYADIMGVPLEVV-----YS--PKELA 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-EEEeccchhhHHHHHHHHHHHhCCceEEe-----cC--HHHHH
Confidence 37899999999999999999996554311 111122 223444331 221 12222211 11 00000
Q ss_pred ccccccCCCceEEEEEcCCCCccchH----HHHHHhhcc--CeEEEEEeCCCccchhHHHHHHHHHcCC-CceE-EEEEc
Q 003169 88 SYRGERQGNEYLINLIDSPGHVDFSS----EVTAALRIT--DGALVVVDCIEGVCVQTETVLRQALGER-IRPV-LTVNK 159 (843)
Q Consensus 88 ~~~~~~~~~~~~i~liDTPGh~df~~----e~~~~l~~~--D~ailVvda~~gv~~~t~~~l~~~~~~~-~p~i-lviNK 159 (843)
.... .-.++.+.||||.|+.-... ++...+..+ .-.-||++|+. +.+.+-+....++ +|+= ++++|
T Consensus 274 ~ai~--~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i~~~I~TK 347 (407)
T COG1419 274 EAIE--ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT----KYEDLKEIIKQFSLFPIDGLIFTK 347 (407)
T ss_pred HHHH--HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc----chHHHHHHHHHhccCCcceeEEEc
Confidence 0000 11356899999999865433 333333333 34568888863 2333323333333 3322 67899
Q ss_pred CCcc
Q 003169 160 MDRC 163 (843)
Q Consensus 160 ~D~~ 163 (843)
+|-.
T Consensus 348 lDET 351 (407)
T COG1419 348 LDET 351 (407)
T ss_pred cccc
Confidence 9965
No 428
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.43 E-value=0.031 Score=62.87 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=89.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc--------eE----------eecCc------c-----------
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD--------VR----------MTDTR------Q----------- 61 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~--------~~----------~~D~~------~----------- 61 (843)
.+...|+++|...+|||+.++.+.. +.+..+. .|+ ++ +-|+. .
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAq-ARIFPRG-SGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQ-ARIFPRG-SGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHH-hccCcCC-CcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 5678899999999999999998743 3333221 121 00 11111 1
Q ss_pred -----ccccccceeeeeeEEEEEeechhhhhccccccCCCceEEEEEcCCCCcc-------------chHHHHHHhhccC
Q 003169 62 -----DEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLINLIDSPGHVD-------------FSSEVTAALRITD 123 (843)
Q Consensus 62 -----~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDTPGh~d-------------f~~e~~~~l~~~D 123 (843)
...+.|.|+....+++... ..+-.+..|+|.||... .....-..+..-+
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVK-------------GPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPN 450 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVK-------------GPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPN 450 (980)
T ss_pred HHHHHhcccCCcccccceEEEeec-------------CCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCC
Confidence 1234577777777777654 22345789999999642 2334555667888
Q ss_pred eEEEEEeC-C-CccchhHHHHHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHHHHHHH
Q 003169 124 GALVVVDC-I-EGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIE 183 (843)
Q Consensus 124 ~ailVvda-~-~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (843)
++|++|-- + +.-......+..++.-.|...|+|++|+|+..-+ -++|+ +++.+++
T Consensus 451 AIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn-lA~Pd----RI~kIle 507 (980)
T KOG0447|consen 451 AIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN-VASPS----RIQQIIE 507 (980)
T ss_pred eEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhc-cCCHH----HHHHHHh
Confidence 88887732 1 1112222345567777888999999999987211 13555 4555665
No 429
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.40 E-value=0.024 Score=62.90 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.5
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
++.-..+.|-.|+|||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3556788999999999999999975
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.005 Score=74.01 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
-+.|+++|+.|+||||++..|...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhh
Confidence 357899999999999999999653
No 431
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.32 E-value=0.026 Score=57.38 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=95.8
Q ss_pred CCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003169 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~ 758 (843)
+..+.+|.+.++-.- .-...+.|-++.|=..|..+|+..|+..-+.|...+.|.++-+.+|.+...|.+..++|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 89 GSDLGDIGAVVVRYF---GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HCCCCcEEEEEEEec---CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 667888888776431 33456666677899999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeee
Q 003169 759 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 796 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
+..+ .+.++..+|..+.-.+...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN---NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7643 5889999999999999999999999987653
No 432
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.30 E-value=0.013 Score=65.15 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCc-----------cchhHHHHHHHHHc----CCCceEEEEEcCC
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~g-----------v~~~t~~~l~~~~~----~~~p~ilviNK~D 161 (843)
+..+.++|..|+..+...+...+..++++|+|||.++- -...+..+++.+.. .+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 67889999999999999999999999999999999962 12233444544432 4679999999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
..
T Consensus 263 ~~ 264 (342)
T smart00275 263 LF 264 (342)
T ss_pred hH
Confidence 76
No 433
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.28 E-value=0.0046 Score=66.66 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCCc-cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~-df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
|||. ....++...+..+|.+++|+||.++.......+.+.. .+.|+|+++||+|+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 7886 4677889999999999999999987776666665554 368999999999975
No 434
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.26 E-value=0.0029 Score=63.16 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCcc------chHHHHHHhhccC---eEEEEEeCCCcc-----chhHHHHHHHHHcCCCceEEEEEcCCc
Q 003169 97 EYLINLIDSPGHVD------FSSEVTAALRITD---GALVVVDCIEGV-----CVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~d------f~~e~~~~l~~~D---~ailVvda~~gv-----~~~t~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
+-.+.++||||+.. ........+..-+ ++++++|+.==+ -......+.......+|.|=+++|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 34577899999654 4556666665533 567777775211 111223333445668999999999998
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 177 l 177 (273)
T KOG1534|consen 177 L 177 (273)
T ss_pred h
Confidence 8
No 435
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.24 E-value=0.0047 Score=61.51 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=44.4
Q ss_pred CCCc-cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 106 PGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~-df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
|||. ....++..++..||.+++|+|+.++.......++... .+.|+++++||+|+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 6764 5677889999999999999999987766555554443 357999999999976
No 436
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.16 E-value=0.028 Score=50.80 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=56.3
Q ss_pred CCCCeEEEEEEeeecC--------CCCceeEEEEEEeeEecCCCEEEEcCCCC--CCCCcc-ccceeeeceEEEEecCCe
Q 003169 372 PEGPLMLYVSKMIPAS--------DKGRFFAFGRVFSGKVATGLKVRIMGPNY--VPGEKK-DLYVKSVQRTVIWMGKKQ 440 (843)
Q Consensus 372 ~~~p~~a~VfK~~~~~--------~~g~~l~~~RV~sG~L~~g~~l~v~~~n~--~~~~~~-~~~~~kv~~l~~~~g~~~ 440 (843)
.+.|+.++|...+.-+ -+|. ++-++|.+|+|+.||.+-+...-. ..++.. .....+|..|+. ..
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~Gg-VigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~----~~ 76 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGG-VAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKA----EN 76 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceee-EEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEe----cC
Confidence 3567778887777544 3344 889999999999999997642100 000000 111245555553 44
Q ss_pred eeeccccCCCEEEE-eccccccccce
Q 003169 441 ETVEDVPCGNTVAM-VGLDQYITKNA 465 (843)
Q Consensus 441 ~~v~~a~AGdIv~i-~gl~~~~~~tg 465 (843)
..+++|.||+.++| ++|+..+++..
T Consensus 77 ~~l~~a~pGgliGvgT~Ldpsltk~D 102 (113)
T cd03688 77 NDLQEAVPGGLIGVGTKLDPTLTKAD 102 (113)
T ss_pred ccccEEeCCCeEEEccccCccccccc
Confidence 56899999999888 46666655543
No 437
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.15 E-value=0.023 Score=62.42 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=76.9
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcC----ccccccCCceEeecCcccccc--ccceeeeeeEEEEEeech---hhhhc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAG----IIAQEVAGDVRMTDTRQDEAE--RGITIKSTGISLYYEMTD---AALKS 88 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~D~~~~E~~--rgiTi~~~~~~~~~~~~~---~~~~~ 88 (843)
++.-..+.|-.|||||||+++|+.... ++-..+.|+.. .|..-.+.. .=.++...++ +....+ ..+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~-iD~~ll~~~~~~v~eL~~GCi--CCs~~~~l~~~l~~ 79 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS-VDDQLIGDRATQIKTLTNGCI--CCSRSNELEDALLD 79 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCcc-ccHHHHhCcCceEEEECCCEE--EEccCchHHHHHHH
Confidence 456678999999999999999996532 11112344321 221111110 0012222222 222111 11112
Q ss_pred cccccC--CCceEEEEEcCCCCccchHHHHHHh---------hccCeEEEEEeCCCccchhH--HHHHHHHHcCCCceEE
Q 003169 89 YRGERQ--GNEYLINLIDSPGHVDFSSEVTAAL---------RITDGALVVVDCIEGVCVQT--ETVLRQALGERIRPVL 155 (843)
Q Consensus 89 ~~~~~~--~~~~~i~liDTPGh~df~~e~~~~l---------~~~D~ailVvda~~gv~~~t--~~~l~~~~~~~~p~il 155 (843)
+..... .......+|-|-|..+-.. +...+ -..|++|.||||........ .....|+.. -=+|
T Consensus 80 l~~~~~~~~~~~d~IvIEttG~a~p~~-i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD~I 155 (318)
T PRK11537 80 LLDNLDKGNIQFDRLVIECTGMADPGP-IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---ADRI 155 (318)
T ss_pred HHHHHhccCCCCCEEEEECCCccCHHH-HHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CCEE
Confidence 211111 1134567899999987432 22222 13589999999986433211 112223322 2378
Q ss_pred EEEcCCcccccccCCHHHHHHHHHHHHHHhh
Q 003169 156 TVNKMDRCFLELQVDGEEAYQTFQKVIENAN 186 (843)
Q Consensus 156 viNK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (843)
++||+|+. .. .+.+++.+.++|
T Consensus 156 vlnK~Dl~----~~-----~~~~~~~l~~ln 177 (318)
T PRK11537 156 LLTKTDVA----GE-----AEKLRERLARIN 177 (318)
T ss_pred EEeccccC----CH-----HHHHHHHHHHhC
Confidence 99999987 42 134555555555
No 438
>PRK11568 hypothetical protein; Provisional
Probab=96.13 E-value=0.039 Score=56.19 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=95.6
Q ss_pred CCCccceEEEEeeeeccccccccCCCchHHHHHHHHHHHHhhcCCeeeeceEEEEEEecCcccccHHHHhhhccceeeee
Q 003169 679 EENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEE 758 (843)
Q Consensus 679 ~~pv~~v~v~l~d~~~~~ds~~~~~~~i~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~Rrg~i~~~ 758 (843)
+..+.+|.+.++-.- .-...+.+-++.|=..|.++|+.+|+.+-..|...+.|+++-+.+|.+...|.+..+.|++.
T Consensus 89 ~~~l~nv~vVVtRYF---GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T PRK11568 89 GSGVGEITAVVVRYY---GGILLGTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNS 165 (204)
T ss_pred HCCCccEEEEEEEEc---CCcccccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcc
Confidence 677888888776431 23456666677899999999999999999999999999999999999999999999999888
Q ss_pred cccCCCCcEEEEEEeehhhhcCccHHHhhhCCCceeee
Q 003169 759 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQ 796 (843)
Q Consensus 759 ~~~~g~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 796 (843)
+..+ .+.+...+|..+.-.|...|..+|+|+..+.
T Consensus 166 ~y~~---~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 166 EYQA---FVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred eecC---CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 7643 5788999999999999999999999987654
No 439
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.97 E-value=0.046 Score=57.62 Aligned_cols=155 Identities=16% Similarity=0.187 Sum_probs=81.5
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcc----ccccCCceEeecCccccccccceeee------------eeEEEEEe
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGII----AQEVAGDVRMTDTRQDEAERGITIKS------------TGISLYYE 80 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i----~~~~~g~~~~~D~~~~E~~rgiTi~~------------~~~~~~~~ 80 (843)
.++..-.|.|-.|+|||||++.++...+-. --.+.|+. .. .++..+++. +..-++..
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes-----~d--ie~sl~~~~~gg~lyEewv~L~NGClCCt 127 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGES-----SD--IEKSLAVSQEGGELYEEWVELRNGCLCCT 127 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccc-----hh--hhHHHHhccccchHHHHHHHhcCCeEEEE
Confidence 456677889999999999999997654311 01123321 11 111111111 11112222
Q ss_pred echhhhh---ccccccCCCceEEEEEcCCCCccch--------HHHHHHhhccCeEEEEEeCCCccc--------hhHHH
Q 003169 81 MTDAALK---SYRGERQGNEYLINLIDSPGHVDFS--------SEVTAALRITDGALVVVDCIEGVC--------VQTET 141 (843)
Q Consensus 81 ~~~~~~~---~~~~~~~~~~~~i~liDTPGh~df~--------~e~~~~l~~~D~ailVvda~~gv~--------~~t~~ 141 (843)
-+++.++ ++.+ .....-..++.|-|..+=- .+-+.+--..||+|-||||....- ..-.+
T Consensus 128 Vk~~gvraie~lvq--kkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~E 205 (391)
T KOG2743|consen 128 VKDNGVRAIENLVQ--KKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINE 205 (391)
T ss_pred ecchHHHHHHHHHh--cCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHH
Confidence 1222222 2223 1224556789999987621 222222245899999999975311 11111
Q ss_pred HHHHHHcCCCceEEEEEcCCcccccccCCHHHHHHHHHHHHHHhhhhhh
Q 003169 142 VLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMA 190 (843)
Q Consensus 142 ~l~~~~~~~~p~ilviNK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (843)
..+|.... =.+++||.|+. + ++....+++.+..+|.+..
T Consensus 206 A~~QiA~A---D~II~NKtDli----~---~e~~~~l~q~I~~INslA~ 244 (391)
T KOG2743|consen 206 ATRQIALA---DRIIMNKTDLV----S---EEEVKKLRQRIRSINSLAQ 244 (391)
T ss_pred HHHHHhhh---heeeecccccc----C---HHHHHHHHHHHHHhhhHHH
Confidence 11222111 14678999998 3 4566677777777887653
No 440
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.96 E-value=0.014 Score=56.95 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.4
Q ss_pred CeEEEEEeCCCccchhHHHHH-HHHHcCCCceEEEEEcCCcc
Q 003169 123 DGALVVVDCIEGVCVQTETVL-RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~~t~~~l-~~~~~~~~p~ilviNK~D~~ 163 (843)
|.+++|+|+.++.......+. ..+...++|+|+++||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999987766666555 45566789999999999986
No 441
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.95 E-value=0.014 Score=75.13 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=28.5
Q ss_pred hccCeEEEEEeCCCccchhH---H---HHH-------HHHHcCCCceEEEEEcCCcc
Q 003169 120 RITDGALVVVDCIEGVCVQT---E---TVL-------RQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 120 ~~~D~ailVvda~~gv~~~t---~---~~l-------~~~~~~~~p~ilviNK~D~~ 163 (843)
+-.||+|++||+.+=..... . ..+ ......++|+-++++|||+.
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 45899999999986332111 0 111 12224577999999999976
No 442
>PRK13695 putative NTPase; Provisional
Probab=95.95 E-value=0.015 Score=57.97 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=30.7
Q ss_pred hccCeEEEEEe---CCCccchhHHHHHHHHHcCCCceEEEEEcC
Q 003169 120 RITDGALVVVD---CIEGVCVQTETVLRQALGERIRPVLTVNKM 160 (843)
Q Consensus 120 ~~~D~ailVvd---a~~gv~~~t~~~l~~~~~~~~p~ilviNK~ 160 (843)
+.+| ++++| +.+....+....+..+.+.+.|+++++||.
T Consensus 95 ~~~~--~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEAD--VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCC--EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 4455 47899 667777777888888888899999999974
No 443
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.93 E-value=0.082 Score=55.66 Aligned_cols=64 Identities=30% Similarity=0.293 Sum_probs=40.9
Q ss_pred eEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHH-HHHHHHHc--CCCceEEEEEcCCcc
Q 003169 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG--ERIRPVLTVNKMDRC 163 (843)
Q Consensus 98 ~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~-~~l~~~~~--~~~p~ilviNK~D~~ 163 (843)
+.+.+||||+.. ...+..++..+|.+++++.+..--..... .+.+.... ...+.-+++|+.|..
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 368999999953 45677889999999999988531111122 12222221 223456899999855
No 444
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=95.80 E-value=0.061 Score=46.76 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=43.7
Q ss_pred CCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEe
Q 003169 388 DKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMV 455 (843)
Q Consensus 388 ~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~ 455 (843)
..|. ++.+||-+|+|++|+.+.+++.+ +.++.-+|..|.. ...++++|.+|+-|.|.
T Consensus 13 ~~g~-vag~kV~~G~l~~g~~v~vlr~~------~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi~ 69 (84)
T cd03692 13 KVGN-IAGCYVTDGKIKRNAKVRVLRNG------EVIYEGKISSLKR----FKDDVKEVKKGYECGIT 69 (84)
T ss_pred CCcE-EEEEEEEECEEeCCCEEEEEcCC------CEEEEEEEEEEEE----cCcccCEECCCCEEEEE
Confidence 3454 89999999999999999998632 1123357777775 36778999999999885
No 445
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.78 E-value=0.02 Score=60.83 Aligned_cols=64 Identities=27% Similarity=0.280 Sum_probs=42.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCC
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGN 96 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
...|+-|+|-+|+|||||+|++........+. ..| .+-|+|+..+..-....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG-----------~~pGVT~~V~~~iri~~---------------- 194 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVG-----------AEPGVTRRVSERIRISH---------------- 194 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceecc-----------CCCCceeeehhheEecc----------------
Confidence 34599999999999999999985544332211 122 24578887665322222
Q ss_pred ceEEEEEcCCCC
Q 003169 97 EYLINLIDSPGH 108 (843)
Q Consensus 97 ~~~i~liDTPGh 108 (843)
+-.+.++||||.
T Consensus 195 rp~vy~iDTPGi 206 (335)
T KOG2485|consen 195 RPPVYLIDTPGI 206 (335)
T ss_pred CCceEEecCCCc
Confidence 446899999995
No 446
>PRK10818 cell division inhibitor MinD; Provisional
Probab=95.63 E-value=0.043 Score=58.87 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcC---------CCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---------RIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~---------~~p~ilviNK~D~~ 163 (843)
..+.+.|||||+... ..+..++..+|.+++|+++...-...+..+++.+... ..+..+++|++|..
T Consensus 112 ~~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 112 MDFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred cCCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 368899999998775 3467778999999999999754444445555554311 12346788999854
No 447
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.62 E-value=0.01 Score=64.29 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCCc-cchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 105 SPGHV-DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 105 TPGh~-df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
=|||. .-..++...+..+|.+++|+|+.++.......+.... . +.|.++++||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~-~-~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKII-G-NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh-C-CCCEEEEEEchhcC
Confidence 47876 3456788899999999999999988777666554443 2 78999999999976
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.51 E-value=0.012 Score=63.87 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=26.1
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCc
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGD 53 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~ 53 (843)
....|+++|-+|+|||+++|.|-...-......+|+
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE 341 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE 341 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCc
Confidence 345899999999999999999955443333334554
No 449
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.46 E-value=0.067 Score=57.30 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=41.5
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH----HcCCCceE-EEEEcCCc
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPV-LTVNKMDR 162 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~----~~~~~p~i-lviNK~D~ 162 (843)
++-+.||||||..... .+..++..||.+|+++.+..---.....+++.+ ...+++.. +++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999875422 244568999999999988643222233333222 23355544 68999984
No 450
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.45 E-value=0.031 Score=55.74 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCccchhHHHHHHH--HHcCCCceEEEEEcCCcc
Q 003169 123 DGALVVVDCIEGVCVQTETVLRQ--ALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 123 D~ailVvda~~gv~~~t~~~l~~--~~~~~~p~ilviNK~D~~ 163 (843)
|.+++|+||.++.......+.+. ....+.|.|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999999888777777776 334578999999999986
No 451
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.25 Score=47.95 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeee----EEEEEeechhhhhccccccCC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTG----ISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~----~~~~~~~~~~~~~~~~~~~~~ 95 (843)
-+|+|.|++|+|||||+..+......-.- ..|......-+...++-|++|-.-. ..+.+.. . ....-
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~-------~-~~~rv 76 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY-KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVG-------F-SRPRV 76 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc-eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcC-------C-CCccc
Confidence 37999999999999999998543211000 0121222222223333344432110 0000000 0 00000
Q ss_pred CceEEEEEcCCCCcc-chHHHHHHhhccCeEEEEEeCCCccchhH---HHHHHHHHcCCCceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVD-FSSEVTAALRITDGALVVVDCIEGVCVQT---ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~d-f~~e~~~~l~~~D~ailVvda~~gv~~~t---~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..| .+|+-+..+ ......+|++.|| +++||=.-....-+ ...++.+...+.|.|.++-+-++.
T Consensus 77 GkY---~V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~ 143 (179)
T COG1618 77 GKY---GVNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH 143 (179)
T ss_pred ceE---EeeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC
Confidence 011 223323221 2334556666777 55688765444333 456677778889988888876654
No 452
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.32 E-value=0.018 Score=58.27 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=42.0
Q ss_pred CCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 106 PGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 106 PGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
|.+..|...+..+++.+|++++|+|+.+........++. ...+.|+++++||+|+.
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~ 74 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLL 74 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcC
Confidence 444447888888899999999999998755444444422 23568999999999986
No 453
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.29 E-value=0.043 Score=56.63 Aligned_cols=66 Identities=14% Similarity=0.038 Sum_probs=39.4
Q ss_pred CceEEEEEcCCCCccchHHHHHH--hhccCeEEEEEeCCCccchhHHHHHHHHHcC----CCceE-EEEEcCCc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAA--LRITDGALVVVDCIEGVCVQTETVLRQALGE----RIRPV-LTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~--l~~~D~ailVvda~~gv~~~t~~~l~~~~~~----~~p~i-lviNK~D~ 162 (843)
.++-+.||||||......-. .. ++.||.+++|++...--......+++.+... +.+.. +++||+|.
T Consensus 115 ~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred cCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 46889999999876322111 12 3489999999987532111223344433332 44443 79999984
No 454
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.27 E-value=0.12 Score=53.45 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=42.8
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCcc---chhHHHHHHHH---HcCCCceEEEEEcCCc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV---CVQTETVLRQA---LGERIRPVLTVNKMDR 162 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv---~~~t~~~l~~~---~~~~~p~ilviNK~D~ 162 (843)
..+.+.||||+|-..-. +..++..+|.+|+-.-.+.-- ..+|..+++.. ....+|.-++.|++.-
T Consensus 82 ~~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 82 SGFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred cCCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 45789999999977543 556777899888766554321 23333333322 3456788899999973
No 455
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.23 E-value=0.14 Score=44.67 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=50.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEEE
Q 003169 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLIN 101 (843)
Q Consensus 22 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (843)
+++.|..|+||||++..|...... .|. .+ +.. + .+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~---------------~v------~~~-----------------~-d~i 37 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK---------------RV------LLI-----------------D-DYV 37 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC---------------eE------EEE-----------------C-CEE
Confidence 678888999999999999554321 121 11 001 1 467
Q ss_pred EEcCCCCccchHH-HHHHhhccCeEEEEEeCCCccchhHHHH
Q 003169 102 LIDSPGHVDFSSE-VTAALRITDGALVVVDCIEGVCVQTETV 142 (843)
Q Consensus 102 liDTPGh~df~~e-~~~~l~~~D~ailVvda~~gv~~~t~~~ 142 (843)
++|+||-.+.... ....+..+|.+++++++...-.......
T Consensus 38 ivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 38 LIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred EEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 8999997764422 2567789999999999886554444443
No 456
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.054 Score=55.31 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=68.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCce
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEY 98 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
.| |.++|+--+|||++.....++ +.+.++-++ |-...+|.+--. +.=.
T Consensus 28 p~-ilLMG~rRsGKsSI~KVVFhk------MsPneTlfl-----ESTski~~d~is--------------------~sfi 75 (347)
T KOG3887|consen 28 PR-ILLMGLRRSGKSSIQKVVFHK------MSPNETLFL-----ESTSKITRDHIS--------------------NSFI 75 (347)
T ss_pred ce-EEEEeecccCcchhhheeeec------cCCCceeEe-----eccCcccHhhhh--------------------hhhc
Confidence 44 999999999999987655322 222222222 222222221100 0123
Q ss_pred EEEEEcCCCCccchHH---HHHHhhccCeEEEEEeCCCccc-hhHHHHHHHHHcCCC----ceEEEEEcCCcc
Q 003169 99 LINLIDSPGHVDFSSE---VTAALRITDGALVVVDCIEGVC-VQTETVLRQALGERI----RPVLTVNKMDRC 163 (843)
Q Consensus 99 ~i~liDTPGh~df~~e---~~~~l~~~D~ailVvda~~gv~-~~t~~~l~~~~~~~~----p~ilviNK~D~~ 163 (843)
.+.+||-||+.+|... ...-.+.+.+.++||||.+... +-++-+.-.++.+++ ..=+++-|.|-+
T Consensus 76 nf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 76 NFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred ceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 5678999999987543 4556688999999999998654 334444444444444 344899999955
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=95.15 E-value=0.022 Score=63.71 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
-..++++|++|+|||||++.|+....
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcc
Confidence 35799999999999999999976543
No 458
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.14 E-value=0.082 Score=56.71 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=40.5
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHH----HcCCCceE-EEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA----LGERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~----~~~~~p~i-lviNK~D 161 (843)
.++-+.||||||..... .+..++..||.+|+++.+..---.....+++.+ ...+++.. +++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46889999999865322 245568899999999977532122222232222 23455654 7899966
No 459
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.11 E-value=0.017 Score=65.01 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=26.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCC
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g 52 (843)
..+||++|-+|+||||++|+|.+...+-....+|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPG 347 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPG 347 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCC
Confidence 5799999999999999999996554443333344
No 460
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.01 E-value=0.062 Score=42.65 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=26.0
Q ss_pred HHHHHhh-ccCeEEEEEeCCCc--cchhHH-HHHHHHHc-C-CCceEEEEEcCC
Q 003169 114 EVTAALR-ITDGALVVVDCIEG--VCVQTE-TVLRQALG-E-RIRPVLTVNKMD 161 (843)
Q Consensus 114 e~~~~l~-~~D~ailVvda~~g--v~~~t~-~~l~~~~~-~-~~p~ilviNK~D 161 (843)
.+..|++ ..+++++++|.++. ...... .+++..+. . ++|.++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4556665 67788999999973 332222 23333332 3 789999999998
No 461
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.95 E-value=0.088 Score=56.31 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCccchHH-HHHHhhccCeEEEEEeCCC
Q 003169 96 NEYLINLIDSPGHVDFSSE-VTAALRITDGALVVVDCIE 133 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e-~~~~l~~~D~ailVvda~~ 133 (843)
.++.+.||||||......- ...++..||.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 4688999999987532111 1123347999999998864
No 462
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.64 E-value=0.11 Score=56.47 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc----CCCceE-EEEEcCC
Q 003169 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG----ERIRPV-LTVNKMD 161 (843)
Q Consensus 97 ~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~----~~~p~i-lviNK~D 161 (843)
++.+.||||||.... .....++..||.+|+++++..---.....+++.+.. .+++.. +++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 578999999987432 223456788999999998764222223333332222 234444 7889987
No 463
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=94.49 E-value=0.11 Score=53.25 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=50.8
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
+.+.+.|||||..... .+....++.+|++|+|+++...-........+++...+.+++ +|+||.|..
T Consensus 126 ~~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 126 KYFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred hcCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 4678999999973322 233344567999999999987666677777788888888866 799999976
No 464
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.46 E-value=0.08 Score=56.82 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|+|+|..|+|||||+.+|+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 465
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=94.42 E-value=0.0021 Score=62.71 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHhcCcccc-ccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCC
Q 003169 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ-EVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQG 95 (843)
Q Consensus 17 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~-~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
...-.+-|+|..++|||++..+.+.++-...- ..+| ++-+.-.+.|+. .
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIg-----------------vdfalkVl~wdd-------------~ 72 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIG-----------------VDFALKVLQWDD-------------K 72 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHhccCh-------------H
Confidence 44668889999999999999998765422111 0112 111111234541 1
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHc------CC--CceEEEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ER--IRPVLTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~------~~--~p~ilviNK~D~~ 163 (843)
.-.+..|+|..|+..|...+.-..+.+.++.+|+|.+.........-|.+-.. .+ +|+++..||+|..
T Consensus 73 t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 73 TIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 23467899999999998888888899999999999998766666666655432 23 3577899999987
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.30 E-value=0.23 Score=49.41 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCc-cccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
.|.|+|.+++||||+++.|....+. ..- ..+ .+...+|-+..+... ...++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~--iat---~~~~~~e~~~ri~~h---------------------~~~R~~~ 56 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLY--IAT---AQPFDDEMAARIAHH---------------------RQRRPAH 56 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEe--CcC---CCCChHHHHHHHHHH---------------------HhcCCCC
Confidence 5899999999999999999776431 000 110 011111211111100 0112334
Q ss_pred EEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccch-----h---H-----HHHHHHHHcCCCceEEEEEcCCccccc
Q 003169 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-----Q---T-----ETVLRQALGERIRPVLTVNKMDRCFLE 166 (843)
Q Consensus 100 i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~-----~---t-----~~~l~~~~~~~~p~ilviNK~D~~~~~ 166 (843)
+..+.+|.+. .+..... ...+-+++||+..+... + . ..+++.....+.+.|++-|=...-
T Consensus 57 w~t~E~~~~l---~~~i~~~-~~~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~Evg~g--- 129 (170)
T PRK05800 57 WQTVEEPLDL---AELLRAD-AAPGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTNEVGMG--- 129 (170)
T ss_pred CeEecccccH---HHHHHhh-cCCCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEcCCccc---
Confidence 5566776542 1222221 12244678888765421 1 1 123334445667788887766555
Q ss_pred ccCCHHHHHHHHHHHHHHhhhhhhhcc
Q 003169 167 LQVDGEEAYQTFQKVIENANVIMATYE 193 (843)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 193 (843)
....+..-+.|++.+..+|+.+....
T Consensus 130 -~vp~~~~~r~~~d~lG~lnq~la~~a 155 (170)
T PRK05800 130 -IVPEYRLGRHFRDIAGRLNQQLAAAA 155 (170)
T ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 34455667889999999999887543
No 467
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.29 E-value=0.21 Score=53.49 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH----cCCCceE-EEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL----GERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~----~~~~p~i-lviNK~D~~ 163 (843)
+++.+.||||||...-. .+..++..||.+|+++.+.---......+++.+. ..+++.. +++|++|..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 46889999999865321 1224688999999988664321122233333222 2345543 788998743
No 468
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=94.22 E-value=0.26 Score=51.73 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=50.0
Q ss_pred hhccccccCCCceEEEEEcCC-CCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCc
Q 003169 86 LKSYRGERQGNEYLINLIDSP-GHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
Q Consensus 86 ~~~~~~~~~~~~~~i~liDTP-Gh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~ 162 (843)
++.+....+..+.-+.+|||| |..|-.-.+...++.+||||+|--..+=-....++-...+.+.++|++-++--|=.
T Consensus 145 I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~ 222 (300)
T KOG3022|consen 145 IKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSG 222 (300)
T ss_pred HHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEecccc
Confidence 344555677777889999997 55555445666677779999886443311222245557888899999855544443
No 469
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=94.11 E-value=0.28 Score=43.69 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=49.8
Q ss_pred EEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEecc
Q 003169 378 LYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 457 (843)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl 457 (843)
++|.-...+...|. ++-+-|.+|+|+.||.+.. |..+ -||..|+-..| .++++|.||+.+-|.|+
T Consensus 3 g~VlE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~ 67 (95)
T cd03702 3 GVVIESKLDKGRGP-VATVLVQNGTLKVGDVLVA-GTTY----------GKVRAMFDENG---KRVKEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCc-cEEEEEEcCeEeCCCEEEE-cccc----------cEEEEEECCCC---CCCCEECCCCcEEEcCC
Confidence 34444444566676 8899999999999999974 2211 36666665544 66899999999999998
Q ss_pred ccc
Q 003169 458 DQY 460 (843)
Q Consensus 458 ~~~ 460 (843)
++.
T Consensus 68 ~~~ 70 (95)
T cd03702 68 KGV 70 (95)
T ss_pred CCC
Confidence 764
No 470
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.02 E-value=0.091 Score=56.69 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCccchH-HHHHHhhccCeEEEEEeCCC
Q 003169 96 NEYLINLIDSPGHVDFSS-EVTAALRITDGALVVVDCIE 133 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~-e~~~~l~~~D~ailVvda~~ 133 (843)
.++-+.||||||..-... .+..++..||.+|+++.+..
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~ 153 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP 153 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence 368899999998542211 12234567999999999865
No 471
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.96 E-value=0.048 Score=59.79 Aligned_cols=55 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceEE
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYLI 100 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (843)
.++|+|-+++||||++|+|...........+| +|-....+.+ +..|
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg~~pG---------------vT~smqeV~L-------------------dk~i 299 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVGNVPG---------------VTRSMQEVKL-------------------DKKI 299 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCCCCcc---------------chhhhhheec-------------------cCCc
Q ss_pred EEEcCCCCc
Q 003169 101 NLIDSPGHV 109 (843)
Q Consensus 101 ~liDTPGh~ 109 (843)
.|+|+||.+
T Consensus 300 ~llDsPgiv 308 (435)
T KOG2484|consen 300 RLLDSPGIV 308 (435)
T ss_pred eeccCCcee
No 472
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.94 E-value=0.72 Score=51.55 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccc-cCCceEeecCccccccccceeeee--------eEEEEEeechhhhhccc
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQE-VAGDVRMTDTRQDEAERGITIKST--------GISLYYEMTDAALKSYR 90 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiTi~~~--------~~~~~~~~~~~~~~~~~ 90 (843)
--|+|+|++-+||||++.++....-+-.-. ...+.+..|..|+-- .|-||-+. ++.+...
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~---------- 86 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLD---------- 86 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEec----------
Confidence 469999999999999999997653221100 000112233333211 12232211 1112221
Q ss_pred cccCCCceEEEEEcCCCCc-------------------------cchHHHHHHhhc------cCeEEEEEeCCCcc----
Q 003169 91 GERQGNEYLINLIDSPGHV-------------------------DFSSEVTAALRI------TDGALVVVDCIEGV---- 135 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~-------------------------df~~e~~~~l~~------~D~ailVvda~~gv---- 135 (843)
++-..++-||||-|+. -|...+.-+-+. .=|+|+--|++=+-
T Consensus 87 ---~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe 163 (492)
T PF09547_consen 87 ---DGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRE 163 (492)
T ss_pred ---CCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChH
Confidence 3347789999999962 244444444431 22556666665432
Q ss_pred --chhHHHHHHHHHcCCCceEEEEEcCC
Q 003169 136 --CVQTETVLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 136 --~~~t~~~l~~~~~~~~p~ilviNK~D 161 (843)
....+++...++..++|.++++|-.+
T Consensus 164 ~Y~eAEervI~ELk~igKPFvillNs~~ 191 (492)
T PF09547_consen 164 NYVEAEERVIEELKEIGKPFVILLNSTK 191 (492)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 23346777888899999999999776
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=0.16 Score=55.55 Aligned_cols=137 Identities=15% Similarity=0.191 Sum_probs=67.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcC---ccccccCCce-E--eecCccc-cccccceeeeeeEEEEEeechhhh-hccc
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAG---IIAQEVAGDV-R--MTDTRQD-EAERGITIKSTGISLYYEMTDAAL-KSYR 90 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g---~i~~~~~g~~-~--~~D~~~~-E~~rgiTi~~~~~~~~~~~~~~~~-~~~~ 90 (843)
.-.|.++|--|+||||.+..|.++.. ...-...+.+ + ..|.... -.+-++.+..++. +.+...+ ..-.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyt----e~dpv~ia~egv 176 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYT----EADPVKIASEGV 176 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEeccc----ccchHHHHHHHH
Confidence 34578899999999999999976531 1110001110 0 1122211 1112222222111 0011000 0001
Q ss_pred cccCCCceEEEEEcCCCCcc----chHHH---HHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCce-EEEEEcCCc
Q 003169 91 GERQGNEYLINLIDSPGHVD----FSSEV---TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDR 162 (843)
Q Consensus 91 ~~~~~~~~~i~liDTPGh~d----f~~e~---~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~-ilviNK~D~ 162 (843)
......++-+.|+||-|... +..|+ ..++ .-|-+|+|+||+-|- .-.....+.+..+-+ -++++|+|-
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEeccc
Confidence 12233578899999999653 33333 3333 368899999998653 322212222222332 368999995
Q ss_pred c
Q 003169 163 C 163 (843)
Q Consensus 163 ~ 163 (843)
.
T Consensus 253 h 253 (483)
T KOG0780|consen 253 H 253 (483)
T ss_pred C
Confidence 4
No 474
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=93.86 E-value=0.066 Score=54.65 Aligned_cols=68 Identities=25% Similarity=0.293 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCccc------hHHHHHHhhccCeEEEEEeCCCcc-ch-----hHHH--HHHHHHcCCCceEEEEEcCC
Q 003169 96 NEYLINLIDSPGHVDF------SSEVTAALRITDGALVVVDCIEGV-CV-----QTET--VLRQALGERIRPVLTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df------~~e~~~~l~~~D~ailVvda~~gv-~~-----~t~~--~l~~~~~~~~p~ilviNK~D 161 (843)
...++.++|+||++++ ...+.+.++..|.=+.+|.-.+.. +. .... -+..+.....|.+=++.|+|
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhH
Confidence 4557889999998765 344667777777655554443321 11 1111 11223355678888999999
Q ss_pred cc
Q 003169 162 RC 163 (843)
Q Consensus 162 ~~ 163 (843)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 86
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.78 E-value=0.12 Score=55.79 Aligned_cols=130 Identities=22% Similarity=0.198 Sum_probs=69.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceE---eecCccc---c------ccccceeeeeeEEEEEeechhhh
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR---MTDTRQD---E------AERGITIKSTGISLYYEMTDAAL 86 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~---~~D~~~~---E------~~rgiTi~~~~~~~~~~~~~~~~ 86 (843)
.-.|.++|-.|+||||.+..|.++... .|... ..|+... | .+-|+.+-+. ....++.++
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~-----~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~----~~G~DpAaV 209 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQ-----QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG----KEGADPAAV 209 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHH-----CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc----CCCCCcHHH
Confidence 557899999999999999999654211 11110 1122221 1 1223332211 111111110
Q ss_pred -hccccccCCCceEEEEEcCCCC----ccchHHHHHHhhc---cCe-----EEEEEeCCCccchhHHHHHHHHHcCC--C
Q 003169 87 -KSYRGERQGNEYLINLIDSPGH----VDFSSEVTAALRI---TDG-----ALVVVDCIEGVCVQTETVLRQALGER--I 151 (843)
Q Consensus 87 -~~~~~~~~~~~~~i~liDTPGh----~df~~e~~~~l~~---~D~-----ailVvda~~gv~~~t~~~l~~~~~~~--~ 151 (843)
-.-......+++-+.||||.|. .+++.|...-.|+ .+. .++|+||+-|-. -+.|++.++ +
T Consensus 210 afDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav 284 (340)
T COG0552 210 AFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAV 284 (340)
T ss_pred HHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhc
Confidence 0001123335788999999995 3566665554443 344 778889987632 234443322 3
Q ss_pred ceE-EEEEcCCc
Q 003169 152 RPV-LTVNKMDR 162 (843)
Q Consensus 152 p~i-lviNK~D~ 162 (843)
++- ++++|+|-
T Consensus 285 ~l~GiIlTKlDg 296 (340)
T COG0552 285 GLDGIILTKLDG 296 (340)
T ss_pred CCceEEEEeccc
Confidence 433 78999993
No 476
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.67 E-value=0.23 Score=53.44 Aligned_cols=66 Identities=9% Similarity=-0.010 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCccch-HHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHH---cCCCceE-EEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFS-SEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL---GERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~-~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~---~~~~p~i-lviNK~D 161 (843)
.++-+.||||||..... .....++..||.+++|+.+..--......+++.+. ..+.++. +++|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 35789999999865211 11122345899999999875322222223333333 2345554 7889765
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.63 E-value=0.071 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
...|.|+.|+|||||++++...
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999543
No 478
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=93.59 E-value=0.15 Score=57.12 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=39.0
Q ss_pred ccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 109 VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 109 ~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+|...+....+.+|++++|+|+.+-.......+.+.+ .+.|+++++||+|+.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl 103 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLL 103 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhC
Confidence 46766566666789999999999876554444444443 267899999999986
No 479
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.49 E-value=0.086 Score=54.80 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003169 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~L 39 (843)
-|+|+||+|||||||++.+
T Consensus 31 fvsilGpSGcGKSTLLrii 49 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 480
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=93.30 E-value=0.086 Score=54.48 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccCCceEeecCccccccccceeeeeeEEEEEeechhhhhccccccCCCceE
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSYRGERQGNEYL 99 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
-.++++|-+.+|||||+..|. |..+...+++ +.|...-.....+ ++-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~---g~~s~vasye-------------fttl~~vpG~~~y----------------~gaK 107 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT---GTFSEVAAYE-------------FTTLTTVPGVIRY----------------KGAK 107 (358)
T ss_pred eeeeEEecCccchhhhhhhhc---CCCCcccccc-------------ceeEEEecceEec----------------cccc
Confidence 378999999999999999993 2222211121 1111111222223 3778
Q ss_pred EEEEcCCCCccc-------hHHHHHHhhccCeEEEEEeCCCccchhHHHHHH-HHHcC-----CCceEEEEEcCCccc
Q 003169 100 INLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALGE-----RIRPVLTVNKMDRCF 164 (843)
Q Consensus 100 i~liDTPGh~df-------~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~-~~~~~-----~~p~ilviNK~D~~~ 164 (843)
+.|.|.||..+= -.++++..|.|..+++|+|+...+.. +.+++ .+... +.|+=+..-|-|+-.
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~h--k~~ie~eleg~girlnk~pp~i~~kkKdkgG 183 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH--KKIIEKELEGFGIRLNKQPPNIGTKKKDKGG 183 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccH--HHHHHHhhhcceeeccCCCCCccccccccCc
Confidence 999999998642 34577788999999999999875532 22322 22222 336777777778763
No 481
>PRK12289 GTPase RsgA; Reviewed
Probab=92.75 E-value=0.17 Score=56.31 Aligned_cols=47 Identities=26% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHhhccCeEEEEEeCCCcc-ch-hHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 117 AALRITDGALVVVDCIEGV-CV-QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 117 ~~l~~~D~ailVvda~~gv-~~-~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
.+++.+|.+++|+|+.+.. .. .....+..+...++|+++++||+|+.
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 3578999999999998643 33 22445556667899999999999986
No 482
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.72 E-value=0.9 Score=48.47 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCccchHHH-HHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCC
Q 003169 96 NEYLINLIDSPGHVDFSSEV-TAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMD 161 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~-~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D 161 (843)
+++-+.||||||+....... ..++..+|.+|+++.+..--......+++.+...+.+.. ++.|..+
T Consensus 112 ~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 112 EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 35789999999866322211 111268999999998764222333444444444444433 4555544
No 483
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.72 E-value=0.12 Score=47.86 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.|+|.|.+|+||||++..|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 389999999999999999966544
No 484
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=92.67 E-value=0.99 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Q 003169 19 IRNMSVIAHVDHGKSTLTDSLVA 41 (843)
Q Consensus 19 irnI~iiG~~~~GKTTL~~~Ll~ 41 (843)
-.||.++|..++|||||+.+|-.
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg 74 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQG 74 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhc
Confidence 46999999999999999999933
No 485
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.66 E-value=0.35 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|+|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 486
>PRK08118 topology modulation protein; Reviewed
Probab=92.60 E-value=0.11 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhcC
Q 003169 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
Q Consensus 20 rnI~iiG~~~~GKTTL~~~Ll~~~g 44 (843)
.+|.|+|++|+|||||+..|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999965544
No 487
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=1.2 Score=48.02 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=26.8
Q ss_pred HHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHH
Q 003169 8 ELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLV 40 (843)
Q Consensus 8 ~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll 40 (843)
-+.+++.+..+.-.|+++|.-|+|||||+.-|.
T Consensus 177 ~a~~ll~~~tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 177 NARKLLHKTTDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred HHHHHhhcCCCeeEEEeecCCCccHHHHHHHHh
Confidence 345566666777889999999999999999883
No 488
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.35 E-value=0.56 Score=50.50 Aligned_cols=36 Identities=14% Similarity=0.489 Sum_probs=28.2
Q ss_pred HHHHhhccc--CCeeEEEEEeCCCCCHHHHHHHHHHhc
Q 003169 8 ELRRIMDFK--HNIRNMSVIAHVDHGKSTLTDSLVAAA 43 (843)
Q Consensus 8 ~~~~~~~~~--~~irnI~iiG~~~~GKTTL~~~Ll~~~ 43 (843)
.|..++..+ .++.|+.|+|.+|.||||+++++....
T Consensus 48 ~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 48 RLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 455555544 567899999999999999999995543
No 489
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=0.24 Score=62.50 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=40.2
Q ss_pred EEEEEcCCCCc------cchHH-----------HHHHhhccCeEEEEEeCCCccc--hhHH-HHH----------HHHHc
Q 003169 99 LINLIDSPGHV------DFSSE-----------VTAALRITDGALVVVDCIEGVC--VQTE-TVL----------RQALG 148 (843)
Q Consensus 99 ~i~liDTPGh~------df~~e-----------~~~~l~~~D~ailVvda~~gv~--~~t~-~~l----------~~~~~ 148 (843)
.-.+|||.|-. ++... -.+..+-.||+|+-+|..+=.+ ++.+ .+. +....
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~ 254 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH 254 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45789999931 12211 1233467999999999986222 2221 111 22234
Q ss_pred CCCceEEEEEcCCcc
Q 003169 149 ERIRPVLTVNKMDRC 163 (843)
Q Consensus 149 ~~~p~ilviNK~D~~ 163 (843)
...|+.+++||+|+.
T Consensus 255 ~~~PVYl~lTk~Dll 269 (1188)
T COG3523 255 ARLPVYLVLTKADLL 269 (1188)
T ss_pred cCCceEEEEeccccc
Confidence 578999999999986
No 490
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.25 E-value=0.13 Score=53.27 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q 003169 21 NMSVIAHVDHGKSTLTDSL 39 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~L 39 (843)
-++|+|++|||||||++.+
T Consensus 33 ~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.09 E-value=0.19 Score=52.58 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=27.8
Q ss_pred HHHHHhhcccCCeeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 7 EELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 7 ~~~~~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
+.|...+....+..-|+|.|+.|+|||||++.|...
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555566678999999999999999999543
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=92.03 E-value=0.34 Score=54.18 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred hhccCeEEEEEeCCCccch-hHHHHHHHHHcCCCceEEEEEcCCcc
Q 003169 119 LRITDGALVVVDCIEGVCV-QTETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 119 l~~~D~ailVvda~~gv~~-~t~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
+..+|.+++|+++..+... .....+..+...++++++++||+|+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~ 155 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLC 155 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 4679999999999876666 44577778888999999999999987
No 493
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.00 E-value=0.14 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcc
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAAAGII 46 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~~g~i 46 (843)
+|.|+|++||||||++..|....+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 78999999999999999997775543
No 494
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=91.96 E-value=0.14 Score=54.09 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHhhccCeEEEEEeCCCcc-chhH-HHHHHHHHcCCCceEEEEEcCCcc
Q 003169 117 AALRITDGALVVVDCIEGV-CVQT-ETVLRQALGERIRPVLTVNKMDRC 163 (843)
Q Consensus 117 ~~l~~~D~ailVvda~~gv-~~~t-~~~l~~~~~~~~p~ilviNK~D~~ 163 (843)
..++.+|++++|+|+.+.. .... ...+..+...++|+++++||+|+.
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~ 80 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLL 80 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccC
Confidence 4688999999999998644 3322 233345556789999999999986
No 495
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.91 E-value=0.16 Score=48.74 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.|+|+|+.|+|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 496
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.88 E-value=0.42 Score=50.32 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCccchHHHHHHhhccCeEEEEEeCCCccchhHHHHHHHHHcCCCceE-EEEEcCCcc
Q 003169 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
Q Consensus 96 ~~~~i~liDTPGh~df~~e~~~~l~~~D~ailVvda~~gv~~~t~~~l~~~~~~~~p~i-lviNK~D~~ 163 (843)
+.+.+.|||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+.+.+ +++|+.|..
T Consensus 107 ~~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 107 DDTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hhCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 367899999999765 457778889999999999875434444455555556677754 899999854
No 497
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=91.67 E-value=0.98 Score=40.24 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=50.2
Q ss_pred EEEEEeeecCCCCceeEEEEEEeeEecCCCEEEEcCCCCCCCCccccceeeeceEEEEecCCeeeeccccCCCEEEEecc
Q 003169 378 LYVSKMIPASDKGRFFAFGRVFSGKVATGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGL 457 (843)
Q Consensus 378 a~VfK~~~~~~~g~~l~~~RV~sG~L~~g~~l~v~~~n~~~~~~~~~~~~kv~~l~~~~g~~~~~v~~a~AGdIv~i~gl 457 (843)
++|.-.-.+...|. ++-+=|++|+|+.||.+.. +..+ -||..++- ..-..+.+|.+|+.+-+.|+
T Consensus 3 g~ViE~~~~~g~G~-vatviV~~GtL~~Gd~iv~-G~~~----------GkVr~~~d---~~g~~v~~a~Ps~~v~i~g~ 67 (95)
T cd03701 3 GTVIESKLDKGRGP-VATVIVQNGTLKKGDVIVA-GGTY----------GKIRTMVD---ENGKALLEAGPSTPVEILGL 67 (95)
T ss_pred EEEEEEEecCCCCe-eEEEEEEcCeEecCCEEEE-CCcc----------ceEEEEEC---CCCCCccccCCCCCEEEeee
Confidence 34444444566676 8889999999999999975 2111 25555554 44456899999999999998
Q ss_pred ccccccce
Q 003169 458 DQYITKNA 465 (843)
Q Consensus 458 ~~~~~~tg 465 (843)
++. ...|
T Consensus 68 ~~~-p~aG 74 (95)
T cd03701 68 KDV-PKAG 74 (95)
T ss_pred cCC-ccCC
Confidence 775 3444
No 498
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.66 E-value=0.18 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeeEEEEEeCCCCCHHHHHHHHHHh
Q 003169 18 NIRNMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 18 ~irnI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.-.+++|+|+.|+|||||+++|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999999999654
No 499
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.60 E-value=0.15 Score=42.43 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 003169 21 NMSVIAHVDHGKSTLTDSLVAA 42 (843)
Q Consensus 21 nI~iiG~~~~GKTTL~~~Ll~~ 42 (843)
.|++.|.+|+||||++++|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999443
No 500
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.57 E-value=1.3 Score=51.08 Aligned_cols=44 Identities=18% Similarity=0.029 Sum_probs=31.8
Q ss_pred hccCeEEEEEeCCCccchhHH-HHHHHH-HcCCCceEEEEEcCCcc
Q 003169 120 RITDGALVVVDCIEGVCVQTE-TVLRQA-LGERIRPVLTVNKMDRC 163 (843)
Q Consensus 120 ~~~D~ailVvda~~gv~~~t~-~~l~~~-~~~~~p~ilviNK~D~~ 163 (843)
..||.++++.|.+......-. .+...- ...++|+++|..|+|+.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlD 539 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLD 539 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccc
Confidence 689999999999865544432 222221 23678999999999998
Done!