Query 003170
Match_columns 842
No_of_seqs 151 out of 162
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 18:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 99.9 8.8E-23 1.9E-27 212.4 11.6 151 253-408 61-235 (321)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 9.9E-21 2.1E-25 198.1 14.7 141 253-402 2-156 (352)
3 TIGR01659 sex-lethal sex-letha 99.8 2.2E-20 4.8E-25 201.5 15.6 145 249-402 102-260 (346)
4 TIGR01648 hnRNP-R-Q heterogene 99.8 2.5E-20 5.4E-25 212.3 12.0 231 212-469 19-285 (578)
5 TIGR01628 PABP-1234 polyadenyl 99.8 7.9E-20 1.7E-24 204.9 15.1 192 256-458 2-210 (562)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.6E-20 1.7E-24 191.5 13.1 192 204-403 47-337 (352)
7 TIGR01628 PABP-1234 polyadenyl 99.8 1.6E-18 3.5E-23 194.4 14.7 191 205-403 45-245 (562)
8 TIGR01645 half-pint poly-U bin 99.8 2.3E-18 5E-23 197.2 15.3 150 253-402 106-271 (612)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 5E-18 1.1E-22 188.9 16.1 149 253-403 1-160 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.6E-17 3.5E-22 184.8 17.3 154 250-403 271-462 (481)
11 TIGR01622 SF-CC1 splicing fact 99.7 1.1E-17 2.3E-22 182.1 15.1 151 250-402 85-253 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.4E-17 3E-22 183.2 15.6 151 252-402 293-489 (509)
13 TIGR01648 hnRNP-R-Q heterogene 99.7 6.5E-18 1.4E-22 192.8 13.1 179 204-403 101-295 (578)
14 KOG0117 Heterogeneous nuclear 99.7 1.8E-17 4E-22 181.5 14.1 191 242-458 76-291 (506)
15 KOG0107 Alternative splicing f 99.7 2.7E-18 5.9E-23 170.5 6.8 68 254-321 10-80 (195)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 3.8E-17 8.2E-22 179.8 15.5 155 248-403 169-363 (509)
17 TIGR01622 SF-CC1 splicing fact 99.7 3.8E-17 8.2E-22 177.8 15.1 194 205-403 134-436 (457)
18 KOG0144 RNA-binding protein CU 99.6 5.9E-16 1.3E-20 169.3 10.0 147 252-406 32-195 (510)
19 KOG0117 Heterogeneous nuclear 99.6 4.6E-15 9.9E-20 163.0 10.8 213 174-407 90-323 (506)
20 KOG0105 Alternative splicing f 99.5 8.8E-14 1.9E-18 140.0 12.1 147 252-401 4-174 (241)
21 KOG0145 RNA-binding protein EL 99.4 5.7E-13 1.2E-17 139.4 12.3 145 249-403 36-195 (360)
22 TIGR01645 half-pint poly-U bin 99.4 7.6E-13 1.6E-17 152.4 14.3 112 205-316 152-272 (612)
23 KOG0123 Polyadenylate-binding 99.4 6.3E-13 1.4E-17 145.4 8.0 195 206-403 119-337 (369)
24 PLN03134 glycine-rich RNA-bind 99.4 2.3E-12 5E-17 124.1 9.6 72 251-322 31-112 (144)
25 PF00076 RRM_1: RNA recognitio 99.4 1.3E-12 2.9E-17 105.8 6.7 60 257-316 1-65 (70)
26 KOG0109 RNA-binding protein LA 99.3 1.7E-12 3.8E-17 137.3 7.7 134 255-403 3-138 (346)
27 KOG0131 Splicing factor 3b, su 99.3 6.2E-12 1.4E-16 126.3 10.5 143 254-402 9-164 (203)
28 TIGR01659 sex-lethal sex-letha 99.3 4.4E-12 9.6E-17 137.6 7.7 111 205-323 152-274 (346)
29 KOG0132 RNA polymerase II C-te 99.2 3.9E-09 8.5E-14 122.6 28.4 64 253-316 420-483 (894)
30 KOG0106 Alternative splicing f 99.2 1.6E-11 3.4E-16 126.4 6.9 143 255-403 2-159 (216)
31 KOG0124 Polypyrimidine tract-b 99.2 2.4E-11 5.3E-16 131.6 7.9 148 254-401 113-276 (544)
32 KOG0123 Polyadenylate-binding 99.2 2E-10 4.2E-15 126.1 12.3 132 255-402 2-140 (369)
33 PF14259 RRM_6: RNA recognitio 99.1 1E-10 2.2E-15 96.6 7.4 59 257-315 1-64 (70)
34 KOG0110 RNA-binding protein (R 99.1 2E-10 4.4E-15 132.1 11.0 152 247-401 509-679 (725)
35 COG0724 RNA-binding proteins ( 99.1 6.4E-10 1.4E-14 106.0 11.0 113 254-366 115-252 (306)
36 PLN03120 nucleic acid binding 99.1 2.7E-10 5.9E-15 120.0 8.4 68 254-322 4-78 (260)
37 KOG0122 Translation initiation 99.1 5.5E-10 1.2E-14 116.5 9.7 71 254-324 189-269 (270)
38 smart00362 RRM_2 RNA recogniti 99.1 6.5E-10 1.4E-14 87.7 7.9 60 256-315 1-64 (72)
39 KOG0113 U1 small nuclear ribon 99.0 4.6E-10 1E-14 119.6 7.8 77 238-316 87-169 (335)
40 KOG0148 Apoptosis-promoting RN 99.0 4.2E-10 9.1E-15 118.7 7.1 118 195-316 95-226 (321)
41 KOG0114 Predicted RNA-binding 99.0 5.5E-10 1.2E-14 104.5 6.6 63 253-315 17-82 (124)
42 KOG0145 RNA-binding protein EL 99.0 1.8E-09 3.9E-14 113.7 10.0 191 204-402 85-345 (360)
43 KOG1457 RNA binding protein (c 99.0 2.6E-09 5.6E-14 110.6 11.0 154 246-402 26-273 (284)
44 KOG4206 Spliceosomal protein s 99.0 6.7E-09 1.5E-13 107.2 13.7 151 250-402 5-208 (221)
45 KOG0111 Cyclophilin-type pepti 98.9 6.6E-10 1.4E-14 114.7 4.6 73 252-324 8-90 (298)
46 KOG0121 Nuclear cap-binding pr 98.9 1.4E-09 3.1E-14 104.9 6.3 70 251-320 33-112 (153)
47 smart00360 RRM RNA recognition 98.9 3.2E-09 6.9E-14 83.3 7.0 57 259-315 1-63 (71)
48 KOG0144 RNA-binding protein CU 98.9 7.7E-10 1.7E-14 122.2 4.7 84 238-324 111-206 (510)
49 PLN03213 repressor of silencin 98.9 3.6E-09 7.8E-14 118.3 8.0 62 254-315 10-75 (759)
50 KOG4207 Predicted splicing fac 98.9 1.9E-09 4.2E-14 110.5 5.0 70 254-323 13-92 (256)
51 PF13893 RRM_5: RNA recognitio 98.9 6.4E-09 1.4E-13 83.8 6.8 46 271-316 1-47 (56)
52 cd00590 RRM RRM (RNA recogniti 98.8 1.1E-08 2.5E-13 81.0 8.0 60 256-315 1-65 (74)
53 PLN03121 nucleic acid binding 98.8 6.5E-09 1.4E-13 108.7 8.4 63 253-316 4-69 (243)
54 KOG0147 Transcriptional coacti 98.8 2.4E-08 5.2E-13 113.0 11.1 146 255-401 279-514 (549)
55 KOG0112 Large RNA-binding prot 98.8 3.3E-09 7.1E-14 124.7 3.8 141 249-403 367-517 (975)
56 PF07744 SPOC: SPOC domain; I 98.7 1.1E-09 2.5E-14 99.9 -2.6 112 697-809 1-119 (119)
57 KOG0125 Ataxin 2-binding prote 98.7 2E-08 4.2E-13 108.5 6.2 68 255-322 97-170 (376)
58 KOG4205 RNA-binding protein mu 98.7 2.6E-08 5.6E-13 107.7 6.6 130 253-392 5-154 (311)
59 KOG0127 Nucleolar protein fibr 98.6 1.3E-07 2.8E-12 107.2 11.3 149 255-403 6-184 (678)
60 KOG0151 Predicted splicing reg 98.6 7.7E-08 1.7E-12 111.3 7.0 73 244-316 163-245 (877)
61 KOG0109 RNA-binding protein LA 98.6 4.8E-08 1E-12 104.3 4.5 101 204-316 38-138 (346)
62 smart00361 RRM_1 RNA recogniti 98.5 2.1E-07 4.5E-12 78.9 6.1 49 268-316 2-63 (70)
63 KOG0147 Transcriptional coacti 98.5 8.8E-08 1.9E-12 108.5 3.4 143 254-402 179-345 (549)
64 KOG4660 Protein Mei2, essentia 98.4 1.3E-07 2.8E-12 107.4 4.5 75 251-328 72-149 (549)
65 KOG0110 RNA-binding protein (R 98.4 7.2E-07 1.6E-11 103.6 9.4 198 254-457 385-644 (725)
66 KOG0149 Predicted RNA-binding 98.4 2.7E-07 5.8E-12 96.3 5.1 60 252-311 10-75 (247)
67 KOG0146 RNA-binding protein ET 98.4 3.4E-07 7.4E-12 97.1 5.3 63 253-315 18-85 (371)
68 KOG0108 mRNA cleavage and poly 98.4 7.5E-07 1.6E-11 100.2 7.5 62 255-316 19-86 (435)
69 KOG0127 Nucleolar protein fibr 98.3 5E-06 1.1E-10 94.8 13.7 148 250-397 113-354 (678)
70 KOG0153 Predicted RNA-binding 98.3 7.9E-07 1.7E-11 96.8 6.7 69 248-316 222-290 (377)
71 KOG1190 Polypyrimidine tract-b 98.2 6.4E-06 1.4E-10 91.5 11.2 148 253-401 296-476 (492)
72 KOG0120 Splicing factor U2AF, 98.2 5.2E-06 1.1E-10 94.7 10.0 75 242-316 277-357 (500)
73 PF00076 RRM_1: RNA recognitio 98.2 2.7E-06 5.9E-11 68.9 5.0 61 342-402 1-64 (70)
74 KOG0131 Splicing factor 3b, su 98.2 6.3E-07 1.4E-11 90.9 1.4 108 204-321 53-174 (203)
75 KOG0126 Predicted RNA-binding 98.1 6.2E-07 1.3E-11 91.1 1.1 72 251-322 32-111 (219)
76 KOG0107 Alternative splicing f 98.1 3.8E-06 8.3E-11 85.0 5.5 67 338-405 9-75 (195)
77 KOG0130 RNA-binding protein RB 98.0 6.7E-06 1.5E-10 80.6 5.7 67 255-321 73-149 (170)
78 PLN03134 glycine-rich RNA-bind 98.0 1.2E-05 2.6E-10 78.0 7.2 73 331-403 26-102 (144)
79 KOG1456 Heterogeneous nuclear 98.0 2.5E-05 5.4E-10 86.2 9.4 140 250-402 27-184 (494)
80 PF14259 RRM_6: RNA recognitio 98.0 1.2E-05 2.6E-10 66.5 5.5 61 342-402 1-64 (70)
81 KOG1924 RhoA GTPase effector D 98.0 1.3E-05 2.8E-10 94.2 7.6 22 799-820 733-754 (1102)
82 KOG0226 RNA-binding proteins [ 97.9 1.7E-05 3.7E-10 84.0 5.6 73 242-314 178-256 (290)
83 KOG4208 Nucleolar RNA-binding 97.8 2.9E-05 6.3E-10 80.2 6.6 73 251-323 46-129 (214)
84 KOG1548 Transcription elongati 97.8 0.00026 5.7E-09 77.7 13.5 150 253-402 133-339 (382)
85 KOG1190 Polypyrimidine tract-b 97.8 0.00013 2.8E-09 81.5 10.9 147 255-403 151-361 (492)
86 KOG1457 RNA binding protein (c 97.8 1.3E-05 2.8E-10 83.8 3.0 65 251-315 207-273 (284)
87 smart00362 RRM_2 RNA recogniti 97.7 8.1E-05 1.8E-09 58.6 5.8 60 341-402 1-64 (72)
88 KOG0121 Nuclear cap-binding pr 97.7 4.7E-05 1E-09 74.3 5.1 66 337-403 34-104 (153)
89 cd00590 RRM RRM (RNA recogniti 97.6 0.00015 3.3E-09 57.3 6.1 62 341-402 1-65 (74)
90 KOG0415 Predicted peptidyl pro 97.6 9.5E-05 2.1E-09 81.4 5.6 78 246-323 231-318 (479)
91 KOG0129 Predicted RNA-binding 97.5 0.0041 8.9E-08 71.4 18.5 154 238-395 243-431 (520)
92 KOG0146 RNA-binding protein ET 97.5 0.00011 2.3E-09 78.7 4.7 69 251-319 282-358 (371)
93 KOG0116 RasGAP SH3 binding pro 97.4 0.00011 2.4E-09 82.8 4.6 57 254-310 288-350 (419)
94 KOG1456 Heterogeneous nuclear 97.4 0.0016 3.5E-08 72.4 13.2 156 247-403 280-473 (494)
95 KOG1924 RhoA GTPase effector D 97.4 0.00027 5.9E-09 83.7 7.7 19 740-758 654-672 (1102)
96 KOG0533 RRM motif-containing p 97.4 0.00031 6.8E-09 74.3 7.4 74 250-323 79-159 (243)
97 KOG4209 Splicing factor RNPS1, 97.4 0.00016 3.5E-09 75.8 4.8 63 253-316 100-168 (231)
98 smart00360 RRM RNA recognition 97.4 0.00033 7.2E-09 54.8 5.2 59 344-402 1-63 (71)
99 KOG4211 Splicing factor hnRNP- 97.3 0.003 6.5E-08 72.1 13.7 136 255-398 11-166 (510)
100 COG0724 RNA-binding proteins ( 97.3 0.00043 9.3E-09 66.4 5.8 64 339-402 115-182 (306)
101 PLN03120 nucleic acid binding 97.3 0.00044 9.5E-09 73.9 6.2 64 339-403 4-68 (260)
102 KOG0124 Polypyrimidine tract-b 97.2 0.00025 5.5E-09 78.3 4.3 107 206-315 159-277 (544)
103 KOG4212 RNA-binding protein hn 97.2 0.0023 5E-08 72.3 11.7 151 251-401 41-280 (608)
104 KOG4454 RNA binding protein (R 97.2 0.00014 3.1E-09 76.0 1.6 64 252-316 7-75 (267)
105 PF04059 RRM_2: RNA recognitio 97.1 0.002 4.3E-08 59.9 8.2 70 255-324 2-87 (97)
106 KOG4205 RNA-binding protein mu 97.1 0.00058 1.3E-08 74.6 5.2 54 253-306 96-155 (311)
107 KOG0132 RNA polymerase II C-te 97.1 0.044 9.6E-07 65.8 20.6 63 337-402 419-482 (894)
108 KOG0114 Predicted RNA-binding 96.9 0.0014 3E-08 62.5 5.1 65 338-402 17-82 (124)
109 KOG0112 Large RNA-binding prot 96.8 0.0011 2.4E-08 79.7 4.9 74 250-323 451-530 (975)
110 KOG0120 Splicing factor U2AF, 96.8 0.002 4.3E-08 74.2 6.9 152 251-402 172-356 (500)
111 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.0016 3.4E-08 75.3 5.4 67 250-316 401-473 (940)
112 PF13893 RRM_5: RNA recognitio 96.6 0.0033 7.2E-08 50.7 4.6 45 356-402 1-46 (56)
113 KOG0105 Alternative splicing f 96.6 0.0021 4.6E-08 66.3 4.1 67 337-403 4-71 (241)
114 KOG4212 RNA-binding protein hn 96.5 0.0037 8E-08 70.7 6.1 71 246-316 528-599 (608)
115 PLN03121 nucleic acid binding 96.4 0.0048 1E-07 65.6 5.6 62 340-402 6-68 (243)
116 smart00361 RRM_1 RNA recogniti 96.4 0.0047 1E-07 52.5 4.5 50 354-403 7-63 (70)
117 KOG4206 Spliceosomal protein s 96.3 0.0089 1.9E-07 62.8 6.7 68 249-316 141-209 (221)
118 KOG2193 IGF-II mRNA-binding pr 96.2 0.0018 3.8E-08 73.0 1.2 138 255-403 2-145 (584)
119 KOG0128 RNA-binding protein SA 96.1 0.00066 1.4E-08 81.1 -2.7 132 245-398 658-798 (881)
120 KOG1548 Transcription elongati 96.1 0.0096 2.1E-07 65.9 6.0 64 251-314 262-338 (382)
121 KOG0106 Alternative splicing f 95.7 0.0065 1.4E-07 63.7 2.8 62 253-316 98-159 (216)
122 KOG3671 Actin regulatory prote 95.6 2.7 5.8E-05 49.3 22.8 108 266-398 21-136 (569)
123 KOG2314 Translation initiation 95.6 0.011 2.3E-07 68.8 4.0 53 264-316 74-131 (698)
124 PLN03213 repressor of silencin 95.6 0.021 4.5E-07 65.7 6.1 111 338-451 9-139 (759)
125 PF08777 RRM_3: RNA binding mo 95.4 0.031 6.7E-07 52.3 5.9 58 256-313 3-60 (105)
126 KOG0108 mRNA cleavage and poly 95.4 0.019 4.2E-07 65.5 5.2 63 340-402 19-85 (435)
127 PF14605 Nup35_RRM_2: Nup53/35 95.3 0.027 5.9E-07 46.8 4.6 50 257-307 4-53 (53)
128 KOG0122 Translation initiation 95.1 0.031 6.7E-07 59.8 5.3 66 338-403 188-257 (270)
129 KOG1855 Predicted RNA-binding 95.0 0.017 3.6E-07 65.5 3.2 66 252-317 229-313 (484)
130 PHA03247 large tegument protei 94.9 0.59 1.3E-05 62.6 16.6 20 695-714 2961-2980(3151)
131 KOG0226 RNA-binding proteins [ 94.9 0.029 6.3E-07 60.3 4.4 164 243-410 85-272 (290)
132 KOG0113 U1 small nuclear ribon 94.9 0.046 9.9E-07 59.9 5.9 67 337-403 99-169 (335)
133 KOG4208 Nucleolar RNA-binding 94.7 0.055 1.2E-06 56.6 5.8 63 338-402 48-117 (214)
134 KOG0130 RNA-binding protein RB 94.7 0.043 9.3E-07 54.7 4.6 66 337-402 70-139 (170)
135 KOG0111 Cyclophilin-type pepti 94.6 0.027 6E-07 59.6 3.4 61 337-401 8-76 (298)
136 KOG1365 RNA-binding protein Fu 94.0 0.27 5.8E-06 55.7 9.5 144 258-401 165-348 (508)
137 KOG2416 Acinus (induces apopto 93.8 0.045 9.8E-07 64.2 3.2 61 253-313 443-504 (718)
138 KOG4210 Nuclear localization s 93.4 0.086 1.9E-06 57.2 4.4 145 252-396 86-246 (285)
139 KOG1923 Rac1 GTPase effector F 93.0 0.31 6.7E-06 58.9 8.5 42 634-675 300-343 (830)
140 KOG0153 Predicted RNA-binding 92.7 0.14 2.9E-06 57.2 4.8 63 337-402 226-295 (377)
141 KOG4676 Splicing factor, argin 92.7 0.13 2.8E-06 58.1 4.6 139 256-397 9-209 (479)
142 KOG4210 Nuclear localization s 92.2 0.078 1.7E-06 57.5 2.2 71 252-323 183-263 (285)
143 KOG3152 TBP-binding protein, a 92.2 0.078 1.7E-06 57.1 2.1 64 253-316 73-154 (278)
144 PF15023 DUF4523: Protein of u 92.1 0.22 4.7E-06 50.2 4.8 55 261-316 97-151 (166)
145 KOG3671 Actin regulatory prote 91.8 1.9 4.1E-05 50.5 12.5 48 266-313 90-138 (569)
146 KOG1996 mRNA splicing factor [ 91.7 0.24 5.2E-06 54.5 5.0 49 267-315 299-354 (378)
147 KOG4574 RNA-binding protein (c 91.7 0.11 2.4E-06 62.9 2.8 76 248-323 292-373 (1007)
148 KOG0151 Predicted splicing reg 91.1 0.28 6.2E-06 58.8 5.2 64 336-402 171-244 (877)
149 PF08777 RRM_3: RNA binding mo 91.1 0.41 9E-06 44.9 5.4 58 340-400 2-60 (105)
150 KOG2202 U2 snRNP splicing fact 90.9 0.096 2.1E-06 56.3 1.1 46 269-314 83-134 (260)
151 KOG1922 Rho GTPase effector BN 90.5 0.96 2.1E-05 55.1 9.2 99 726-824 407-528 (833)
152 PHA03247 large tegument protei 90.5 4.9 0.00011 54.7 15.4 27 342-368 2285-2311(3151)
153 KOG0116 RasGAP SH3 binding pro 90.0 0.41 8.9E-06 54.8 5.2 56 340-395 289-348 (419)
154 PF04847 Calcipressin: Calcipr 89.8 0.63 1.4E-05 47.9 5.8 58 266-323 7-70 (184)
155 KOG4660 Protein Mei2, essentia 88.3 0.66 1.4E-05 54.4 5.3 67 336-403 72-138 (549)
156 KOG0115 RNA-binding protein p5 88.3 0.41 8.9E-06 51.8 3.4 60 251-310 28-92 (275)
157 KOG1830 Wiskott Aldrich syndro 88.0 10 0.00022 44.0 14.0 20 601-620 299-318 (518)
158 KOG4307 RNA binding protein RB 85.9 2 4.4E-05 51.9 7.5 72 252-323 864-943 (944)
159 KOG0115 RNA-binding protein p5 85.8 1.6 3.5E-05 47.4 6.1 80 302-397 6-92 (275)
160 KOG0129 Predicted RNA-binding 85.8 1.4 3E-05 51.5 6.0 98 249-368 365-472 (520)
161 PF04059 RRM_2: RNA recognitio 85.3 2 4.4E-05 40.3 5.8 62 340-402 2-70 (97)
162 COG5175 MOT2 Transcriptional r 85.1 0.87 1.9E-05 51.1 3.9 79 331-409 106-201 (480)
163 PF03467 Smg4_UPF3: Smg-4/UPF3 84.3 1.8 3.9E-05 44.1 5.4 62 253-314 6-79 (176)
164 KOG4307 RNA binding protein RB 84.1 21 0.00046 43.7 14.5 48 353-401 16-64 (944)
165 KOG4207 Predicted splicing fac 83.0 1.8 4E-05 46.0 5.0 65 339-403 13-81 (256)
166 PF11608 Limkain-b1: Limkain b 82.7 3 6.5E-05 39.0 5.6 58 255-316 3-65 (90)
167 KOG1923 Rac1 GTPase effector F 82.3 3.1 6.8E-05 50.8 7.1 15 801-815 478-492 (830)
168 KOG0125 Ataxin 2-binding prote 81.6 1.9 4.2E-05 48.3 4.7 95 339-438 96-193 (376)
169 KOG0149 Predicted RNA-binding 81.5 2.2 4.9E-05 45.9 5.0 60 337-396 10-73 (247)
170 PF05172 Nup35_RRM: Nup53/35/4 80.6 2.8 6.1E-05 39.5 4.8 55 257-313 9-76 (100)
171 KOG4661 Hsp27-ERE-TATA-binding 80.2 2.4 5.1E-05 50.4 5.0 65 337-401 403-471 (940)
172 COG5175 MOT2 Transcriptional r 79.4 2.5 5.4E-05 47.6 4.7 61 255-315 115-190 (480)
173 PF10567 Nab6_mRNP_bdg: RNA-re 78.8 14 0.0003 41.2 9.9 156 254-410 15-228 (309)
174 KOG2591 c-Mpl binding protein, 78.7 4.7 0.0001 47.9 6.8 77 242-319 163-249 (684)
175 KOG4211 Splicing factor hnRNP- 77.8 3.5 7.5E-05 48.2 5.3 104 206-311 53-166 (510)
176 KOG0415 Predicted peptidyl pro 77.1 4 8.7E-05 46.3 5.5 66 337-402 237-306 (479)
177 PF11608 Limkain-b1: Limkain b 77.0 6.3 0.00014 37.0 5.8 58 340-400 3-62 (90)
178 KOG4849 mRNA cleavage factor I 76.7 1.5E+02 0.0033 34.3 18.7 63 339-401 80-148 (498)
179 PF15023 DUF4523: Protein of u 72.6 6.2 0.00014 40.1 5.0 61 351-411 99-162 (166)
180 KOG4209 Splicing factor RNPS1, 72.4 3.8 8.2E-05 43.6 3.7 65 337-402 99-167 (231)
181 PF14605 Nup35_RRM_2: Nup53/35 71.9 10 0.00022 31.7 5.3 50 341-394 3-53 (53)
182 PF08675 RNA_bind: RNA binding 69.4 22 0.00048 33.3 7.4 64 254-319 8-71 (87)
183 KOG1996 mRNA splicing factor [ 68.4 6.8 0.00015 43.7 4.6 49 353-401 300-353 (378)
184 PHA01732 proline-rich protein 67.5 6.2 0.00013 37.0 3.5 15 702-716 60-74 (94)
185 KOG1995 Conserved Zn-finger pr 63.8 10 0.00023 42.9 5.0 66 251-316 63-142 (351)
186 PHA01732 proline-rich protein 62.6 10 0.00022 35.6 3.9 9 698-706 76-84 (94)
187 KOG1830 Wiskott Aldrich syndro 62.5 43 0.00093 39.2 9.5 11 355-365 54-64 (518)
188 KOG4849 mRNA cleavage factor I 62.2 20 0.00042 41.0 6.7 60 255-314 81-148 (498)
189 KOG4454 RNA binding protein (R 62.0 3.7 8.1E-05 44.1 1.2 65 335-402 5-74 (267)
190 KOG1925 Rac1 GTPase effector F 58.2 24 0.00051 42.0 6.7 21 799-819 387-407 (817)
191 KOG4672 Uncharacterized conser 56.9 53 0.0011 38.4 9.0 8 775-782 475-482 (487)
192 KOG2391 Vacuolar sorting prote 53.2 34 0.00074 38.9 6.7 21 776-796 315-335 (365)
193 KOG4672 Uncharacterized conser 51.3 86 0.0019 36.7 9.5 14 298-311 47-60 (487)
194 KOG2068 MOT2 transcription fac 51.0 12 0.00025 42.2 2.8 60 255-314 78-149 (327)
195 COG5178 PRP8 U5 snRNP spliceos 47.4 16 0.00035 46.9 3.3 13 703-715 51-63 (2365)
196 PRK09752 adhesin; Provisional 45.8 22 0.00048 45.9 4.2 22 104-125 84-105 (1250)
197 KOG0128 RNA-binding protein SA 45.7 11 0.00024 46.8 1.6 60 254-313 736-800 (881)
198 KOG2891 Surface glycoprotein [ 44.8 5.5 0.00012 44.1 -0.9 50 266-315 173-247 (445)
199 KOG0566 Inositol-1,4,5-triphos 43.6 1.5E+02 0.0032 38.1 10.5 14 291-304 627-640 (1080)
200 KOG0533 RRM motif-containing p 42.9 48 0.001 36.1 5.7 65 337-403 81-150 (243)
201 KOG2068 MOT2 transcription fac 42.0 16 0.00036 41.1 2.2 73 331-403 69-151 (327)
202 PF15449 Retinal: Retinal prot 41.9 5.6E+02 0.012 33.8 15.0 19 698-716 1132-1150(1287)
203 COG5178 PRP8 U5 snRNP spliceos 38.4 28 0.0006 45.0 3.4 10 760-769 137-146 (2365)
204 KOG4590 Signal transduction pr 35.1 1.1E+02 0.0025 35.6 7.4 15 800-814 336-350 (409)
205 PF11767 SET_assoc: Histone ly 35.0 1.2E+02 0.0025 27.0 5.9 49 265-316 11-59 (66)
206 PF04625 DEC-1_N: DEC-1 protei 34.7 1.8E+02 0.004 33.3 8.6 17 694-710 187-203 (407)
207 PLN00034 mitogen-activated pro 33.0 1.2E+02 0.0026 32.6 6.9 12 694-705 75-86 (353)
208 KOG0804 Cytoplasmic Zn-finger 32.4 3.7E+02 0.008 32.1 10.8 98 218-315 37-140 (493)
209 KOG1984 Vesicle coat complex C 32.0 1.3E+03 0.028 30.2 17.3 16 708-723 291-306 (1007)
210 KOG4590 Signal transduction pr 31.4 1.7E+02 0.0036 34.3 8.0 14 701-714 266-279 (409)
211 KOG2893 Zn finger protein [Gen 30.7 3.7E+02 0.0079 29.9 9.8 11 804-814 312-322 (341)
212 PF08952 DUF1866: Domain of un 30.7 1.1E+02 0.0025 31.1 5.8 45 269-316 51-95 (146)
213 PLN02805 D-lactate dehydrogena 30.4 1.1E+02 0.0023 36.8 6.5 58 266-323 278-346 (555)
214 KOG4285 Mitotic phosphoprotein 28.9 55 0.0012 36.9 3.5 49 260-309 203-251 (350)
215 PRK15313 autotransport protein 28.1 91 0.002 39.8 5.5 16 252-267 181-196 (955)
216 PRK09752 adhesin; Provisional 28.1 61 0.0013 42.2 4.2 31 240-271 292-322 (1250)
217 KOG2202 U2 snRNP splicing fact 28.0 33 0.00072 37.6 1.7 50 354-403 83-136 (260)
218 COG5638 Uncharacterized conser 27.9 94 0.002 36.5 5.2 60 208-288 121-185 (622)
219 KOG2236 Uncharacterized conser 27.8 1.5E+02 0.0033 35.2 6.9 14 380-393 317-330 (483)
220 KOG0307 Vesicle coat complex C 26.6 1.5E+03 0.031 30.1 15.2 16 771-786 946-961 (1049)
221 PRK15313 autotransport protein 26.6 1E+02 0.0022 39.4 5.6 19 251-269 213-231 (955)
222 cd00594 KU Ku-core domain; inc 26.2 57 0.0012 34.4 3.0 66 761-836 110-177 (272)
223 PRK00856 pyrB aspartate carbam 26.0 98 0.0021 34.4 4.8 40 252-293 155-194 (305)
224 PF10309 DUF2414: Protein of u 25.7 2.2E+02 0.0049 25.2 6.0 53 255-310 6-62 (62)
225 TIGR00387 glcD glycolate oxida 24.9 1.2E+02 0.0026 34.4 5.5 55 269-323 147-212 (413)
226 KOG1984 Vesicle coat complex C 24.6 7.8E+02 0.017 31.9 12.2 25 697-721 260-285 (1007)
227 KOG1855 Predicted RNA-binding 24.5 72 0.0016 37.5 3.6 62 337-398 229-307 (484)
228 KOG2314 Translation initiation 24.0 1.2E+02 0.0027 36.8 5.4 67 337-403 56-131 (698)
229 COG1021 EntE Peptide arylation 23.8 77 0.0017 37.4 3.6 78 263-355 444-535 (542)
230 KOG4410 5-formyltetrahydrofola 23.7 1.4E+02 0.003 33.8 5.3 45 256-300 332-377 (396)
231 PF10309 DUF2414: Protein of u 23.4 2.5E+02 0.0053 24.9 5.8 55 341-397 7-62 (62)
232 smart00498 FH2 Formin Homology 23.0 84 0.0018 36.0 3.8 25 799-823 114-138 (432)
233 PF08675 RNA_bind: RNA binding 22.8 2.1E+02 0.0045 27.2 5.5 56 339-398 8-63 (87)
234 KOG0307 Vesicle coat complex C 22.2 1.9E+03 0.04 29.2 15.0 13 776-788 1001-1013(1049)
235 PF02735 Ku: Ku70/Ku80 beta-ba 21.5 45 0.00097 33.9 1.1 67 762-836 105-174 (200)
236 KOG4676 Splicing factor, argin 21.4 1.1E+02 0.0023 35.9 4.0 60 340-400 8-74 (479)
237 PF15513 DUF4651: Domain of un 21.4 1.2E+02 0.0025 27.2 3.4 29 268-296 8-52 (62)
238 COG5353 Uncharacterized protei 21.0 2.1E+02 0.0046 29.6 5.6 50 250-299 83-151 (161)
239 PRK11230 glycolate oxidase sub 20.6 2E+02 0.0043 34.0 6.2 57 268-324 203-270 (499)
240 PRK11425 PTS system N-acetylga 20.1 2.7E+02 0.0058 28.3 6.2 69 293-376 79-147 (157)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8.8e-23 Score=212.43 Aligned_cols=151 Identities=20% Similarity=0.286 Sum_probs=127.4
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce--EE--EEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RV--KFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RI--rF~r 322 (842)
.+-|++||.|++.++.++|+++|.+||.|.+.+|.| +|||+||.|-+.+||++|+..|+|++|+ .| ..+-
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 388999999999999999999999999999999864 9999999999999999999999999987 33 3332
Q ss_pred cccCCccccccc----------cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHH
Q 003170 323 VGLGTKGVINGV----------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 392 (842)
Q Consensus 323 ~~lGsrg~~~Gv----------a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~ 392 (842)
+.++ -+||. ....||.||||||.+.+++|+|..-|..||-|-+ |+.|.++.+|||.|+|.|.|++
T Consensus 141 RKp~---e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E--VRvFk~qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 141 RKPS---EMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE--VRVFKDQGYAFVRFETKEAAAH 215 (321)
T ss_pred cCcc---ccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE--EEEecccceEEEEecchhhHHH
Confidence 2211 11111 1257999999999999999999888888655544 6668889999999999999999
Q ss_pred HHHHhhhcccC----CCCCC
Q 003170 393 AMAHLRQHRKS----RSNYL 408 (842)
Q Consensus 393 Am~~lrg~R~e----rSsf~ 408 (842)
|++++|++-++ ||+|+
T Consensus 216 AIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred HHHHhcCceeCceEEEEecc
Confidence 99999999986 99998
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.85 E-value=9.9e-21 Score=198.11 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=119.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
...+||||||+.+++|+||+++|++||+|.+|++.+ +||||||+|.+.+||.+|++.|+|..+. +|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 368999999999999999999999999999999853 6799999999999999999999999886 777776
Q ss_pred cccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhh
Q 003170 323 VGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 323 ~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lr 398 (842)
+.-. ....+.|||||++..++.++|...|.++|.+..+.+. +- .++.++||+|++.|||..|+..|+
T Consensus 82 ~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~ 152 (352)
T TIGR01661 82 PSSD---------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN 152 (352)
T ss_pred cccc---------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 5311 2346789999999999999999999998766443322 11 246689999999999999999999
Q ss_pred hccc
Q 003170 399 QHRK 402 (842)
Q Consensus 399 g~R~ 402 (842)
|+..
T Consensus 153 g~~~ 156 (352)
T TIGR01661 153 GTTP 156 (352)
T ss_pred CCcc
Confidence 8764
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.84 E-value=2.2e-20 Score=201.51 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=120.6
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
+-....++||||||+.++||+||+++|+.||+|++|++.+ +||||||+|.+.+||++|++.|+|..+. +|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4455789999999999999999999999999999999853 6799999999999999999999999876 66
Q ss_pred EEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeee-c---CCCceeeEEecChhhHHHHH
Q 003170 319 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD-L---SCEGALLMEFRTPEEATTAM 394 (842)
Q Consensus 319 rF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d-l---~~r~~afVEF~s~edAa~Am 394 (842)
.|+++.. ....+++|||++|+..+++|+|.+.|.++|.+..+.+.. - .++.++||+|++.|+|..|+
T Consensus 182 ~~a~p~~---------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 182 SYARPGG---------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ecccccc---------cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 6666531 123467899999999999999999999987665433321 1 12358999999999999999
Q ss_pred HHhhhccc
Q 003170 395 AHLRQHRK 402 (842)
Q Consensus 395 ~~lrg~R~ 402 (842)
+.|+++..
T Consensus 253 ~~lng~~~ 260 (346)
T TIGR01659 253 SALNNVIP 260 (346)
T ss_pred HHhCCCcc
Confidence 99998765
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.82 E-value=2.5e-20 Score=212.31 Aligned_cols=231 Identities=19% Similarity=0.222 Sum_probs=157.5
Q ss_pred ccccccccCCCCCCCCCcccc--cc--cceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe
Q 003170 212 SEGASNALLSPNHHLPVPYAS--TT--SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF 287 (842)
Q Consensus 212 ~~~~~~~~~~~~~~~p~~~~g--~~--~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~ 287 (842)
+|.|..+|+..|+......-| ++ -..+| |+.+ ....++||||||+.+++|+||+++|++||+|.++++.
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~--~~~~-----p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~ 91 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGW--SGVQ-----PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLM 91 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcc--cCCC-----CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEE
Confidence 566777788777777433322 11 12345 4333 2235899999999999999999999999999999985
Q ss_pred -----cCCceEEEEecChHHHHHHHHHhcCCcceEEEEeccccCCcccccccc-ccccceEEEccCCCchhHHHHHHHHh
Q 003170 288 -----PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVA-VGSCFHVYVGNIPNQWAKDEILHESY 361 (842)
Q Consensus 288 -----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~lGsrg~~~Gva-~~~s~~LwVG~Iss~~~kEEi~~E~~ 361 (842)
++||||||+|.+.+||.+|++.|+|..+. . |...+|+ ...+++||||||+..+++|||++||.
T Consensus 92 ~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~------~-----Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFs 160 (578)
T TIGR01648 92 MDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR------P-----GRLLGVCISVDNCRLFVGGIPKNKKREEILEEFS 160 (578)
T ss_pred ECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec------C-----CccccccccccCceeEeecCCcchhhHHHHHHhh
Confidence 48999999999999999999999998642 0 0011111 24689999999999999999999999
Q ss_pred hccccCCceeeec-------CCCceeeEEecChhhHHHHHHHhhhccc--C----CCCCCCCCCCCCCCcccccCCCCCC
Q 003170 362 KVVYKGPYMVTDL-------SCEGALLMEFRTPEEATTAMAHLRQHRK--S----RSNYLPPNTGPANAAMSQIDGARSV 428 (842)
Q Consensus 362 k~g~~g~~~~~dl-------~~r~~afVEF~s~edAa~Am~~lrg~R~--e----rSsf~~r~ss~~~~Pmr~eD~~~sv 428 (842)
+++- +.+.++.+ ..+.++||+|+++++|+.|++.|...++ + ...|... ....+.+...
T Consensus 161 kv~e-gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p--------~~~~d~~~~~ 231 (578)
T TIGR01648 161 KVTE-GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEP--------EEEVDEDVMA 231 (578)
T ss_pred cccC-CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecc--------cccccccccc
Confidence 9732 22222222 3467899999999999999988764332 1 2333311 0111111113
Q ss_pred CCCcEEEe-ccC---cccccccccCC--CCceeecc-------cCCCCCCcccC
Q 003170 429 PAAPIHVD-IRS---NRLGNISAGGF--GSPHTAPF-------HSSQPGFHHAT 469 (842)
Q Consensus 429 PSnVLwig-~p~---~~~~n~a~~~f--Gei~r~k~-------e~~a~~~~~~a 469 (842)
...+|+|+ ++. +..+...|..| |+|+++++ ||...+.+..|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKA 285 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHH
Confidence 45677776 553 22344489999 99998764 56665554433
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.82 E-value=7.9e-20 Score=204.89 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=137.6
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL 325 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l 325 (842)
.||||||+.++||++|+++|++||+|.+|++. +++|||||+|.+.+||++|++.|+++.+. ||.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999994 46799999999999999999999999765 565543322
Q ss_pred CCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 326 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 326 Gsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..+ ....++|||+|++..++.++|.+.|.++|.+-.+.+..- .+++++||+|++.|+|..|++.+++...
T Consensus 82 ~~~-------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 82 SLR-------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccc-------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 221 123568999999999999999999999887766544322 2467899999999999999999998876
Q ss_pred CCCCC-CCCCCCCCCCcccccCCCCCCCCCcEEEeccC---cccccccccCCCCceeecc
Q 003170 403 SRSNY-LPPNTGPANAAMSQIDGARSVPAAPIHVDIRS---NRLGNISAGGFGSPHTAPF 458 (842)
Q Consensus 403 erSsf-~~r~ss~~~~Pmr~eD~~~svPSnVLwig~p~---~~~~n~a~~~fGei~r~k~ 458 (842)
+.... ..+....... . ......-+++++-++|. +.-+...|..||+|+.+++
T Consensus 155 ~~~~i~v~~~~~~~~~---~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i 210 (562)
T TIGR01628 155 NDKEVYVGRFIKKHER---E-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAV 210 (562)
T ss_pred cCceEEEecccccccc---c-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEE
Confidence 42221 1000000000 0 00001223444456773 2234448899999976554
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=7.6e-20 Score=191.47 Aligned_cols=192 Identities=17% Similarity=0.192 Sum_probs=141.4
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-.||+|+.+|.|+.+|+.||+..= -|..-.+-| ..+. .-....++||||||+.++++++|+++|++||.|..
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~g~~l---~g~~i~v~~---a~~~--~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 118 (352)
T TIGR01661 47 YGFVNYVRPEDAEKAVNSLNGLRL---QNKTIKVSY---ARPS--SDSIKGANLYVSGLPKTMTQHELESIFSPFGQIIT 118 (352)
T ss_pred EEEEEECcHHHHHHHHhhcccEEE---CCeeEEEEe---eccc--ccccccceEEECCccccCCHHHHHHHHhccCCEEE
Confidence 369999999999999999887431 233212212 1111 11234678999999999999999999999999999
Q ss_pred EEEec------CCceEEEEecChHHHHHHHHHhcCCcce------EEEEeccccC--C----------------ccccc-
Q 003170 284 FFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDVGLG--T----------------KGVIN- 332 (842)
Q Consensus 284 V~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~r~~lG--s----------------rg~~~- 332 (842)
+.+.. .||||||+|++.+||++|++.|+|..+. +++|+...-. . ++..+
T Consensus 119 ~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (352)
T TIGR01661 119 SRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLST 198 (352)
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccc
Confidence 88753 6899999999999999999999998652 5666532110 0 00000
Q ss_pred --------------------------------------------------------cc------c--ccccceEEEccCC
Q 003170 333 --------------------------------------------------------GV------A--VGSCFHVYVGNIP 348 (842)
Q Consensus 333 --------------------------------------------------------Gv------a--~~~s~~LwVG~Is 348 (842)
+. . .+.++.|||||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~ 278 (352)
T TIGR01661 199 ILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLS 278 (352)
T ss_pred cccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCC
Confidence 00 0 1234479999999
Q ss_pred CchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 349 NQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 349 s~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..++.|+|.+-|.++|-+-.+.+. +. .++.++||+|++.|||..||..|+|+..+
T Consensus 279 ~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 279 PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 999999999999998766553332 21 35778999999999999999999998874
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.78 E-value=1.6e-18 Score=194.37 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=144.4
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE
Q 003170 205 HFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF 284 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV 284 (842)
.||.|.+.|.|.++++.+|+..- -|+.-.|.|. .-|+... .+...+|||+||+.++++++|++.|++||.|.++
T Consensus 45 afV~F~~~~~A~~Al~~ln~~~i---~gk~i~i~~s-~~~~~~~--~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~ 118 (562)
T TIGR01628 45 GYVNFQNPADAERALETMNFKRL---GGKPIRIMWS-QRDPSLR--RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSC 118 (562)
T ss_pred EEEEECCHHHHHHHHHHhCCCEE---CCeeEEeecc-ccccccc--ccCCCceEEcCCCccCCHHHHHHHHHhcCCccee
Confidence 59999999999999999987642 2443344452 2333322 2346789999999999999999999999999999
Q ss_pred EEec-----CCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccccCCccccccccccccceEEEccCCCchhHHHHH
Q 003170 285 FFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEIL 357 (842)
Q Consensus 285 ~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~ 357 (842)
++.. +||||||+|++.++|++|++.|+|..+. .|....-.....+ .+......++|||+|++..+++|+|.
T Consensus 119 ~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~--~~~~~~~~~~l~V~nl~~~~tee~L~ 196 (562)
T TIGR01628 119 KVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER--EAAPLKKFTNLYVKNLDPSVNEDKLR 196 (562)
T ss_pred EeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc--ccccccCCCeEEEeCCCCcCCHHHHH
Confidence 9863 7899999999999999999999998765 4443221100000 01123456789999999999999999
Q ss_pred HHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 358 HESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 358 ~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.|.++|.+-.+.+..- ..++++||+|++.|+|..|++.|+++.+.
T Consensus 197 ~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 197 ELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred HHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 99999876654333221 23457999999999999999999988864
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=2.3e-18 Score=197.22 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=120.0
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVG 324 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~ 324 (842)
..++||||||+.+++|++|+++|++||+|.+|.+. ++||||||+|++.++|.+|++.|+|+.+. +|++.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999984 38999999999999999999999999876 55554432
Q ss_pred c--CCccccccc--cccccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHH
Q 003170 325 L--GTKGVINGV--AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 325 l--Gsrg~~~Gv--a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~ 396 (842)
- ..+...+.+ .....+.|||||++..++.|+|.+.|.+||.+-.+.+.. -..++++||+|++.++|..|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 1 011011111 123568999999999999999999999987665443332 13567899999999999999999
Q ss_pred hhhccc
Q 003170 397 LRQHRK 402 (842)
Q Consensus 397 lrg~R~ 402 (842)
||++-+
T Consensus 266 mNg~el 271 (612)
T TIGR01645 266 MNLFDL 271 (612)
T ss_pred hCCCee
Confidence 998865
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.77 E-value=5e-18 Score=188.86 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=116.4
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHh--cCCcce----EEEEeccccC
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYI--RNHFSW----RVKFMDVGLG 326 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L--~G~~~~----RIrF~r~~lG 326 (842)
||+.||||||+.+++|+||+++|++||+|.++.+.+.||||||+|++.++|.+|++.| +|..+. +|+|....--
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 6899999999999999999999999999999999999999999999999999999986 444443 6776643200
Q ss_pred Ccccc-ccccccc--cceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCc--eeeEEecChhhHHHHHHHhhhcc
Q 003170 327 TKGVI-NGVAVGS--CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEG--ALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 327 srg~~-~Gva~~~--s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~--~afVEF~s~edAa~Am~~lrg~R 401 (842)
.+..- ++..... ...|||+|++..++.|+|...|.++|.+-. ++.+..++ .|||||++.|+|..|+..|+|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~--v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR--IVTFTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE--EEEEecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 01000 0001122 347899999999999999999988765544 33344444 69999999999999999999998
Q ss_pred cC
Q 003170 402 KS 403 (842)
Q Consensus 402 ~e 403 (842)
+.
T Consensus 159 i~ 160 (481)
T TIGR01649 159 IY 160 (481)
T ss_pred cc
Confidence 73
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.75 E-value=1.6e-17 Score=184.83 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=123.1
Q ss_pred cCCCCCeEEecCCCC-ccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 250 IFSASKQLWLGSFGP-EASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~-dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
...+++.||||||.. .+|+++|+++|+.||.|.+|++.+ .||||||+|.+.+||.+|++.|+|..+. +|.|.+.
T Consensus 271 ~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 271 GGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 356889999999998 699999999999999999999876 5799999999999999999999999776 6666532
Q ss_pred cc-----------CC---cccc----c-----cc-----cccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC
Q 003170 324 GL-----------GT---KGVI----N-----GV-----AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS 375 (842)
Q Consensus 324 ~l-----------Gs---rg~~----~-----Gv-----a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~ 375 (842)
.. |. +... + +. ...++++|||+|++..++.|+|.+-|..+|.+-...++.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 10 00 0000 0 00 01467899999999999999999999998753344555555
Q ss_pred CC----ceeeEEecChhhHHHHHHHhhhcccC
Q 003170 376 CE----GALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 376 ~r----~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+ +.+||||++.|+|..|+..|+++-++
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~ 462 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLN 462 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccC
Confidence 43 78999999999999999999998864
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.75 E-value=1.1e-17 Score=182.07 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=116.7
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
.....++||||||+.++++++|+++|++||+|.+|.+.. +||||||+|.+.+||.+|+. |+|+.+. +|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 345678999999999999999999999999999999853 68999999999999999996 9998776 333
Q ss_pred EeccccC--Cc--cccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHH
Q 003170 320 FMDVGLG--TK--GVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEAT 391 (842)
Q Consensus 320 F~r~~lG--sr--g~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa 391 (842)
+...... .+ ....| ....++.|||||++..++.++|...|.++|.+..+.+. +- .++++|||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~-~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPG-DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCC-CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 3221000 00 00000 11337899999999999999999999998766543332 11 34568999999999999
Q ss_pred HHHHHhhhccc
Q 003170 392 TAMAHLRQHRK 402 (842)
Q Consensus 392 ~Am~~lrg~R~ 402 (842)
.|+..|+|+.+
T Consensus 243 ~A~~~l~g~~i 253 (457)
T TIGR01622 243 EALEVMNGFEL 253 (457)
T ss_pred HHHHhcCCcEE
Confidence 99999998765
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.75 E-value=1.4e-17 Score=183.20 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=116.2
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
...++||||||+.++++++|+++|+.||+|..+.+.. ++|||||+|.+.++|..|++.|+|..++ +|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999854 6899999999999999999999999886 66666
Q ss_pred ccccCCc----------------cc---cccccccccceEEEccCCCch----------hHHHHHHHHhhccccCCceee
Q 003170 322 DVGLGTK----------------GV---INGVAVGSCFHVYVGNIPNQW----------AKDEILHESYKVVYKGPYMVT 372 (842)
Q Consensus 322 r~~lGsr----------------g~---~~Gva~~~s~~LwVG~Iss~~----------~kEEi~~E~~k~g~~g~~~~~ 372 (842)
..+.... +. +.-+...+++.|||.|+.... +.|+|.+||.+||.+-.+.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 4332110 00 001123578999999996432 346788899888766543332
Q ss_pred e-------cCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 373 D-------LSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 373 d-------l~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
. ....+.+||+|.+.|+|..|+..|+|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF 489 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE
Confidence 1 11235799999999999999999999875
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.74 E-value=6.5e-18 Score=192.75 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=137.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCC-cc
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LE 282 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp-Ie 282 (842)
-.||.+++.|.|..+|..||... +..|.. ++ +.+....++||||||+.++++++|.++|++|+. +.
T Consensus 101 faFV~F~~~e~A~~Ai~~lng~~--i~~Gr~---l~--------V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv 167 (578)
T TIGR01648 101 YAFVTFCGKEEAKEAVKLLNNYE--IRPGRL---LG--------VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVV 167 (578)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCe--ecCCcc---cc--------ccccccCceeEeecCCcchhhHHHHHHhhcccCCce
Confidence 46999999999999999998754 222332 22 222345789999999999999999999999974 55
Q ss_pred eEEEe-------cCCceEEEEecChHHHHHHHHHhcCCc--ce----EEEEeccccCCccccccccccccceEEEccCCC
Q 003170 283 HFFFF-------PIKGFALVEYINIIDAIRAREYIRNHF--SW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPN 349 (842)
Q Consensus 283 sV~~~-------~~RGFAFVeF~~i~DA~~A~~~L~G~~--~~----RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss 349 (842)
++.++ +.||||||+|++.+||..|++.|.... +| +|+++.+.... +--....+++|||||++.
T Consensus 168 ~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~----d~~~~~~~k~LfVgNL~~ 243 (578)
T TIGR01648 168 DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEV----DEDVMAKVKILYVRNLMT 243 (578)
T ss_pred EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccc----cccccccccEEEEeCCCC
Confidence 55553 368999999999999999999987543 33 66666653211 100113468999999999
Q ss_pred chhHHHHHHHHhhc--cccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 350 QWAKDEILHESYKV--VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 350 ~~~kEEi~~E~~k~--g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.++.|+|.++|.++ |.+.. ++.+ +.+|||||++.|||..||+.|+++.++
T Consensus 244 ~~tee~L~~~F~~f~~G~I~r--V~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 244 TTTEEIIEKSFSEFKPGKVER--VKKI--RDYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred CCCHHHHHHHHHhcCCCceEE--EEee--cCeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 99999999999998 55543 3333 569999999999999999999988764
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.8e-17 Score=181.50 Aligned_cols=191 Identities=19% Similarity=0.268 Sum_probs=139.8
Q ss_pred cCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 242 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 242 ~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+|-+- .-.|.+|||.|+.|+.|+||.-+|++-|+|-.|++.. +||||||.|.+.++|.+|++.||+..+
T Consensus 76 eg~~p-----~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei 150 (506)
T KOG0117|consen 76 EGPPP-----PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI 150 (506)
T ss_pred cCCCC-----CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc
Confidence 66554 6689999999999999999999999999999999854 799999999999999999999999964
Q ss_pred eEEEEeccccCCccccccccc-cccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-------CCCceeeEEecCh
Q 003170 316 WRVKFMDVGLGTKGVINGVAV-GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-------SCEGALLMEFRTP 387 (842)
Q Consensus 316 ~RIrF~r~~lGsrg~~~Gva~-~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-------~~r~~afVEF~s~ 387 (842)
. .|-.-||++ ..+|.|+||+||..|+||||++|+.+++ .|-..++.+ ..|.+|||||++|
T Consensus 151 r-----------~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVt-eGVvdVivy~~p~dk~KNRGFaFveYe~H 218 (506)
T KOG0117|consen 151 R-----------PGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVT-EGVVDVIVYPSPDDKTKNRGFAFVEYESH 218 (506)
T ss_pred c-----------CCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhC-CCeeEEEEecCccccccccceEEEEeecc
Confidence 3 122334555 7899999999999999999999999973 122333322 4588899999999
Q ss_pred hhHHHHHHHhhhccc--C----CCCCCCCCCCCCCCcccccCCCCC-CCCCcEEE-eccC---cccccccccCCCCceee
Q 003170 388 EEATTAMAHLRQHRK--S----RSNYLPPNTGPANAAMSQIDGARS-VPAAPIHV-DIRS---NRLGNISAGGFGSPHTA 456 (842)
Q Consensus 388 edAa~Am~~lrg~R~--e----rSsf~~r~ss~~~~Pmr~eD~~~s-vPSnVLwi-g~p~---~~~~n~a~~~fGei~r~ 456 (842)
.-|+.|.+-|-.-++ + .-.|.+. ...-|.+ . .==.+|+| .++. +-.++..|..||.|+|+
T Consensus 219 ~~Aa~aRrKl~~g~~klwgn~~tVdWAep--------~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 219 RAAAMARRKLMPGKIKLWGNAITVDWAEP--------EEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred hhHHHHHhhccCCceeecCCcceeeccCc--------ccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEe
Confidence 988888654443332 1 2223321 0000110 1 11234554 2332 44678899999999998
Q ss_pred cc
Q 003170 457 PF 458 (842)
Q Consensus 457 k~ 458 (842)
|.
T Consensus 290 kk 291 (506)
T KOG0117|consen 290 KK 291 (506)
T ss_pred ec
Confidence 84
No 15
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.7e-18 Score=170.51 Aligned_cols=68 Identities=24% Similarity=0.486 Sum_probs=63.9
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce--EEEEe
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM 321 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~ 321 (842)
.++||||||++++++.||+.+|.+||+|.+|||++ ++|||||||+|.+||+||+++|||+.+| ||++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 57999999999999999999999999999999986 9999999999999999999999999999 55544
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.73 E-value=3.8e-17 Score=179.79 Aligned_cols=155 Identities=18% Similarity=0.215 Sum_probs=119.2
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhcccc------------CCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rf------------GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
.+.....++||||||+.++|+++|++.|..| ++|.++++.+.+|||||+|++.++|..|+ .|+|..+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 3455668999999999999999999999974 67889999999999999999999999999 5999865
Q ss_pred e--EEEEeccccCC-----------cc---ccccc--------cccccceEEEccCCCchhHHHHHHHHhhccccCCcee
Q 003170 316 W--RVKFMDVGLGT-----------KG---VINGV--------AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV 371 (842)
Q Consensus 316 ~--RIrF~r~~lGs-----------rg---~~~Gv--------a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~ 371 (842)
. .|+..++.-.. .. ...+. .....+.||||||+..++.|+|.+.|..+|.+..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 4 44443321000 00 00000 1134689999999999999999999999876544332
Q ss_pred -eec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 372 -TDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 372 -~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++. .++++|||||.+.++|..|+..|+|+.+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~ 363 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG 363 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 221 25678999999999999999999988864
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.73 E-value=3.8e-17 Score=177.81 Aligned_cols=194 Identities=18% Similarity=0.204 Sum_probs=136.4
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccceeeeccC--------CccccccCCCCCeEEecCCCCccCHHHHHHhcc
Q 003170 205 HFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDE--------DPAAMDIFSASKQLWLGSFGPEASEAHIRFQID 276 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g--------~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~ 276 (842)
.||.|.+.|.|..+|. ||+.. + -|.. -+|.+... .....+....+++||||||+.++||++|+++|+
T Consensus 134 afVeF~~~e~A~~Al~-l~g~~--~-~g~~-i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~ 208 (457)
T TIGR01622 134 AYVEFYDVESVIKALA-LTGQM--L-LGRP-IIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE 208 (457)
T ss_pred EEEEECCHHHHHHHHH-hCCCE--E-CCee-eEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4999999999999986 44322 1 1111 00110000 000112234479999999999999999999999
Q ss_pred ccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecccc------------------CC-
Q 003170 277 RFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL------------------GT- 327 (842)
Q Consensus 277 rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l------------------Gs- 327 (842)
+||.|..|.+. ..+|||||+|.+.++|++|++.|+|..+. +|.|+.-.. |.
T Consensus 209 ~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (457)
T TIGR01622 209 PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKN 288 (457)
T ss_pred hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcC
Confidence 99999999986 46899999999999999999999998765 777742100 00
Q ss_pred ---------------------------------------ccccc---------c----------c----cccccceEEEc
Q 003170 328 ---------------------------------------KGVIN---------G----------V----AVGSCFHVYVG 345 (842)
Q Consensus 328 ---------------------------------------rg~~~---------G----------v----a~~~s~~LwVG 345 (842)
.+.++ + + ...+++.|+|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 368 (457)
T TIGR01622 289 LNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLS 368 (457)
T ss_pred CCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEe
Confidence 00000 0 0 01356888898
Q ss_pred cCCCchh----------HHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 346 NIPNQWA----------KDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 346 ~Iss~~~----------kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
++-...+ +|+|..||.++|.+-.+.+.+-.....+||+|.++|+|..|+..|+|+..+
T Consensus 369 n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~ 436 (457)
T TIGR01622 369 NMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFG 436 (457)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccC
Confidence 8855433 578999999987665544544456677999999999999999999998754
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=5.9e-16 Score=169.27 Aligned_cols=147 Identities=20% Similarity=0.278 Sum_probs=128.6
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce-------EE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW-------RV 318 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~-------RI 318 (842)
...-+||||-|+...+|.|||++|++||.+..|.+.+ +|||+||.|...+||.+|+.+|+..... +|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456899999999999999999999999999999865 7899999999999999999999988654 99
Q ss_pred EEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee---ecCCCceeeEEecChhhHHHHHH
Q 003170 319 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT---DLSCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 319 rF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~---dl~~r~~afVEF~s~edAa~Am~ 395 (842)
||+|.- |-. ....+.||||-++.+.+++||.+-|.+||.+++|+|- +=.+|.+|||.|.+-|-|..||+
T Consensus 112 k~Ad~E---~er-----~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 112 KYADGE---RER-----IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred cccchh---hhc-----cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHH
Confidence 999853 211 2568899999999999999999999999999997553 24578999999999999999999
Q ss_pred Hhhhcc-cCCCC
Q 003170 396 HLRQHR-KSRSN 406 (842)
Q Consensus 396 ~lrg~R-~erSs 406 (842)
.|||.- +|+|+
T Consensus 184 a~ng~~tmeGcs 195 (510)
T KOG0144|consen 184 ALNGTQTMEGCS 195 (510)
T ss_pred hhccceeeccCC
Confidence 999876 57776
No 19
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.6e-15 Score=162.96 Aligned_cols=213 Identities=17% Similarity=0.222 Sum_probs=163.1
Q ss_pred CCCCCCCCCCCCC--CCcccccccc--CCCCCCCCC---CCCCCCccccccccCCCCCCCCCcccccccceeeeccCCcc
Q 003170 174 SMPRDLPNPQMLS--PAARTPLHFR--NNSFEGRNH---FPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPA 246 (842)
Q Consensus 174 ~~pr~~~~~~~~~--~~~~~~~~~~--~~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~ 246 (842)
-+|||+-.-.+.- -.+=.-.++| -..|.|.|- ||-|-.-|-|+.||.-+|-+ .++.|+. +.||
T Consensus 90 kIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~--Eir~GK~---igvc----- 159 (506)
T KOG0117|consen 90 KIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY--EIRPGKL---LGVC----- 159 (506)
T ss_pred CCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc--cccCCCE---eEEE-----
Confidence 3789887765531 1111111222 234556443 99999999999999987755 4556775 4433
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCC-cceEEEe-------cCCceEEEEecChHHHHHHHHHh-cCC-cce
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP-LEHFFFF-------PIKGFALVEYINIIDAIRAREYI-RNH-FSW 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp-IesV~~~-------~~RGFAFVeF~~i~DA~~A~~~L-~G~-~~~ 316 (842)
+.-+.|.||||||+-+-+++||.++|.+-++ |.+|.++ +.||||||+|+|-+-|..|++.| +|+ .+|
T Consensus 160 ---~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw 236 (506)
T KOG0117|consen 160 ---VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW 236 (506)
T ss_pred ---EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeec
Confidence 5567899999999999999999999999998 6688875 48999999999999999998765 555 345
Q ss_pred ----EEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHH
Q 003170 317 ----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATT 392 (842)
Q Consensus 317 ----RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~ 392 (842)
.|+.+++..+.. .-.....+.|||=||.-.++.|.|.++|..+|.... ++.+. -+|||.|..-|||..
T Consensus 237 gn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veR--Vkk~r--DYaFVHf~eR~davk 308 (506)
T KOG0117|consen 237 GNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVER--VKKPR--DYAFVHFAEREDAVK 308 (506)
T ss_pred CCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEE--eeccc--ceeEEeecchHHHHH
Confidence 888888753321 112245789999999999999999999999866654 76664 499999999999999
Q ss_pred HHHHhhhcccCCCCC
Q 003170 393 AMAHLRQHRKSRSNY 407 (842)
Q Consensus 393 Am~~lrg~R~erSsf 407 (842)
||+.++|+-+|++..
T Consensus 309 Am~~~ngkeldG~~i 323 (506)
T KOG0117|consen 309 AMKETNGKELDGSPI 323 (506)
T ss_pred HHHHhcCceecCceE
Confidence 999999999975553
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=8.8e-14 Score=139.96 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=118.7
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
..+|.+|||||+.++.|.||+++|-+||+|..|-+.. +..||||+||+.+||++|+..-+|-..- ||||.+-+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3589999999999999999999999999999998753 5689999999999999999999987653 99999765
Q ss_pred cCC---ccccc--------------cccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecCh
Q 003170 325 LGT---KGVIN--------------GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP 387 (842)
Q Consensus 325 lGs---rg~~~--------------Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~ 387 (842)
-++ +|.-+ +..-.+-..|-|-+++++-+-.+|-+.++++ |+.-|.++.-...-.|||-+.
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---GdvCfadv~rDg~GvV~~~r~ 160 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---GDVCFADVQRDGVGVVEYLRK 160 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh---CCeeeeeeecccceeeeeeeh
Confidence 322 11100 1111234568899999988888998888885 676678888888999999999
Q ss_pred hhHHHHHHHhhhcc
Q 003170 388 EEATTAMAHLRQHR 401 (842)
Q Consensus 388 edAa~Am~~lrg~R 401 (842)
||-.-|++.|.-++
T Consensus 161 eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 161 EDMKYAVRKLDDQK 174 (241)
T ss_pred hhHHHHHHhhcccc
Confidence 99999988887655
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.7e-13 Score=139.41 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=121.4
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
|.+---.+|-|-.|+.+.|++||+.+|+..|.||+++..| +-||+||+|-+..||++|+..|+|-++- +|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 4455567899999999999999999999999999999877 5599999999999999999999998774 77
Q ss_pred EEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCC--c---eeeecCCCceeeEEecChhhHHHH
Q 003170 319 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP--Y---MVTDLSCEGALLMEFRTPEEATTA 393 (842)
Q Consensus 319 rF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~--~---~~~dl~~r~~afVEF~s~edAa~A 393 (842)
-|+|+--. . -.--+|||-++|...+-.|++.-|..||-+=- + .++ =.+|.-.||+|++-+||-.|
T Consensus 116 SyARPSs~---~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt-g~srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 116 SYARPSSD---S------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT-GLSRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred EeccCChh---h------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc-ceecceeEEEecchhHHHHH
Confidence 88987411 1 12348999999999999999999999876511 1 122 24677899999999999999
Q ss_pred HHHhhhcccC
Q 003170 394 MAHLRQHRKS 403 (842)
Q Consensus 394 m~~lrg~R~e 403 (842)
++.|+|++..
T Consensus 186 Ik~lNG~~P~ 195 (360)
T KOG0145|consen 186 IKGLNGQKPS 195 (360)
T ss_pred HHhccCCCCC
Confidence 9999999964
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.44 E-value=7.6e-13 Score=152.40 Aligned_cols=112 Identities=18% Similarity=0.145 Sum_probs=83.1
Q ss_pred CCCCCCCccccccccCCCCCCC---CCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCc
Q 003170 205 HFPGRSSSEGASNALLSPNHHL---PVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL 281 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpI 281 (842)
.|+.|++.|.|..+|..||+.. ..+.++.-...-..-........-....++||||||+.+++++||+++|++||+|
T Consensus 152 AFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I 231 (612)
T TIGR01645 152 AFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI 231 (612)
T ss_pred EEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCe
Confidence 5999999999999999988754 2222221100000000000001112346799999999999999999999999999
Q ss_pred ceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 282 EHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 282 esV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.++.+.+ .||||||+|++.+||.+|++.|||..+.
T Consensus 232 ~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 232 VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred eEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 9999864 6899999999999999999999999776
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=6.3e-13 Score=145.43 Aligned_cols=195 Identities=17% Similarity=0.168 Sum_probs=149.5
Q ss_pred CCCCCCccccccccCCCCCCC---CCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc
Q 003170 206 FPGRSSSEGASNALLSPNHHL---PVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE 282 (842)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe 282 (842)
||+|+++|.|+++|..+|+-. ..+|+|.+.+--| -+.+.-- ..+.-.+++|.|+.-++++.+|.+.|..||+|.
T Consensus 119 FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e--r~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 119 FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE--REAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh--hcccccc-hhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 999999999999999999866 8888887633222 1222222 345567899999999999999999999999999
Q ss_pred eEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccccCCcc-----------ccccccccccceEEE
Q 003170 283 HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG-----------VINGVAVGSCFHVYV 344 (842)
Q Consensus 283 sV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~lGsrg-----------~~~Gva~~~s~~LwV 344 (842)
++.+.+ ++||+||+|++.++|..|++.|+|+... .+...+.+.+... ...........+|||
T Consensus 196 s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~v 275 (369)
T KOG0123|consen 196 SVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYV 275 (369)
T ss_pred EEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcccccccccccc
Confidence 999854 7999999999999999999999999753 2222222211100 011111245789999
Q ss_pred ccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 345 GNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 345 G~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
=|+...++.|++...|..+|-+-.+.+.. -.+.++.||+|.+.+||..||..+++..+.
T Consensus 276 knld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~ 337 (369)
T KOG0123|consen 276 KNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIG 337 (369)
T ss_pred ccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhc
Confidence 99999999999999999987775533222 345677999999999999999999998874
No 24
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.36 E-value=2.3e-12 Score=124.10 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=64.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
-..+++||||||+.++||+||+++|++||+|.++.+. ++||||||+|++.+||.+|++.|+|+.+. +|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999985 36899999999999999999999999775 6666
Q ss_pred ec
Q 003170 321 MD 322 (842)
Q Consensus 321 ~r 322 (842)
+.
T Consensus 111 a~ 112 (144)
T PLN03134 111 AN 112 (144)
T ss_pred CC
Confidence 53
No 25
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.3e-12 Score=105.76 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=56.7
Q ss_pred EEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 257 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 257 LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
||||||+.++|++||++.|++||+|..+.+.. .+|||||+|++.+||++|++.|+|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 79999999999999999999999999999876 5899999999999999999999998653
No 26
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.33 E-value=1.7e-12 Score=137.35 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=114.5
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccccCCccccc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKGVIN 332 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~lGsrg~~~ 332 (842)
-+||||||+..+++.+|+.+|++||++...-|.+ +|+||.-|+..-|++|++.|+|-++- -|.+.-+. +|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk--sK---- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK--SK---- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--ccceEEeecccccHHHHhhcccceecceEEEEEecc--cc----
Confidence 3799999999999999999999999999888865 89999999999999999999998875 44444332 12
Q ss_pred cccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 333 GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 333 Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+.+..|.||||+....-.|+..-|.++|-.-+|.|. ++++||.|+-.|||-.|++.|++.--+
T Consensus 75 ---sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv----kdy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 75 ---SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV----KDYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred ---CCCccccccCCCCccccCHHHhhhhcccCCceeeeee----cceeEEEEeeccchHHHHhcccccccc
Confidence 4688999999999999999999999998766666652 578999999999999999998876543
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=6.2e-12 Score=126.33 Aligned_cols=143 Identities=13% Similarity=0.185 Sum_probs=115.4
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEecccc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 325 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~l 325 (842)
..+||||||..-++|+-|.++|.+-||+.++.+- ..+|||||||++.+||.=|++.|++-.+. .|+|.+..-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 3589999999999999999999999999999974 37899999999999999999999977766 899988741
Q ss_pred CCccccccccccccceEEEccCCCchhHHHHHHHHhhcccc--CCceeeec---CCCceeeEEecChhhHHHHHHHhhhc
Q 003170 326 GTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 326 Gsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~--g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
+ +....-+-+|+|||.-+..+...+-+-|.+||.. .|.-.++- .++.++||.|++.|.|..|+..++|+
T Consensus 89 ~------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 89 H------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred c------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 1 1222233689999999988777777888887765 22212221 23447999999999999999999988
Q ss_pred cc
Q 003170 401 RK 402 (842)
Q Consensus 401 R~ 402 (842)
-.
T Consensus 163 ~l 164 (203)
T KOG0131|consen 163 YL 164 (203)
T ss_pred hh
Confidence 75
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.29 E-value=4.4e-12 Score=137.63 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=86.1
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceE
Q 003170 205 HFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHF 284 (842)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV 284 (842)
.||.|+++|.|+.||+.||...= .+.. +......+.. ......+|||+||+.++||+||+++|++||.|+.+
T Consensus 152 aFVeF~~~e~A~~Ai~~LnG~~l---~gr~---i~V~~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v 223 (346)
T TIGR01659 152 AFVDFGSEADSQRAIKNLNGITV---RNKR---LKVSYARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQK 223 (346)
T ss_pred EEEEEccHHHHHHHHHHcCCCcc---CCce---eeeecccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEE
Confidence 69999999999999998886441 1221 1111112211 12346789999999999999999999999999999
Q ss_pred EEec------CCceEEEEecChHHHHHHHHHhcCCcc------eEEEEecc
Q 003170 285 FFFP------IKGFALVEYINIIDAIRAREYIRNHFS------WRVKFMDV 323 (842)
Q Consensus 285 ~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~------~RIrF~r~ 323 (842)
.+.+ +||||||+|.+.+||++|++.|+|..+ .+|++++.
T Consensus 224 ~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 224 NILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred EEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 9864 569999999999999999999999854 26676654
No 29
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=3.9e-09 Score=122.60 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=60.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.|++||||.|..+++|.||..+|+.||.|++|.+-.+||+|||--.+..||++|+..|....+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~ 483 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA 483 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc
Confidence 4899999999999999999999999999999999999999999999999999999999966543
No 30
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.6e-11 Score=126.36 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=113.8
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccccCCcc-
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGLGTKG- 329 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~lGsrg- 329 (842)
..+|||+|++.+.+.||+++|..||.|.+|.+.. ||+||+|+|..||.+|+..|||+.++ .+++++..-+.+|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4699999999999999999999999999999876 89999999999999999999999988 4566664212221
Q ss_pred ccc----------cccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhh
Q 003170 330 VIN----------GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQ 399 (842)
Q Consensus 330 ~~~----------Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg 399 (842)
.+. ++.....+.|-|=+++.-..--+|-.-|..+|.. +.. +. ..+++||+|.+.+||..|+.-+++
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~~--~~-~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-TYV--DA-RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-chh--hh-hccccceeehhhhhhhhcchhccc
Confidence 121 2334567777777777776667888888887666 322 22 688999999999999999999998
Q ss_pred cccC
Q 003170 400 HRKS 403 (842)
Q Consensus 400 ~R~e 403 (842)
..+.
T Consensus 156 ~~~~ 159 (216)
T KOG0106|consen 156 KKLN 159 (216)
T ss_pred hhhc
Confidence 8864
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.4e-11 Score=131.59 Aligned_cols=148 Identities=20% Similarity=0.217 Sum_probs=117.3
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEE------ecCCceEEEEecChHHHHHHHHHhcCCcce--EEEEecccc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGL 325 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~------~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~l 325 (842)
-|.+|||+|+-...|+.||.+|..||||.++.+ .+-||||||||+-++-|.-|.+.|||.-++ .|++.|+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 488999999999999999999999999999986 468999999999999999999999999876 677776631
Q ss_pred --CCccccccccc--cccceEEEccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHHHh
Q 003170 326 --GTKGVINGVAV--GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 326 --Gsrg~~~Gva~--~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~~l 397 (842)
.+.-.|+-|.. +.-+.+||..|++.++.++|-.-|.-||.+=-|.... ---+++-||||.++..-..|+..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 11111222222 4578899999999999999999999987764432221 123567999999998877888877
Q ss_pred hhcc
Q 003170 398 RQHR 401 (842)
Q Consensus 398 rg~R 401 (842)
|-.-
T Consensus 273 NlFD 276 (544)
T KOG0124|consen 273 NLFD 276 (544)
T ss_pred chhh
Confidence 7543
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2e-10 Score=126.08 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=109.2
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccccCCcc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGTKG 329 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~lGsrg 329 (842)
..|||| ++|||++|.+.|+++|++.++++-+ +-|||||+|.+..||++|++.|+...+. .||-|.++ |
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~---r- 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ---R- 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc---c-
Confidence 469999 9999999999999999999999754 7899999999999999999999998765 66666554 1
Q ss_pred ccccccccccceEEEccCCCchhHHHHHHHHhhccccCCcee--eecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 330 VINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV--TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 330 ~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~--~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.-..|||-+....++.+.|-+=|..||.+=.|.+ ..--++.+ ||+|++.++|..|+..+||.-.
T Consensus 75 --------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 75 --------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred --------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 1112999999999999999999999877633311 11126677 9999999999999999998774
No 33
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.15 E-value=1e-10 Score=96.64 Aligned_cols=59 Identities=31% Similarity=0.534 Sum_probs=53.7
Q ss_pred EEecCCCCccCHHHHHHhccccCCcceEEEecC-----CceEEEEecChHHHHHHHHHhcCCcc
Q 003170 257 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 257 LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-----RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
|||+||+.+++++||++.|+.||+|+.|.+... +|+|||+|.+.+||.+|++.++|..+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 799999999999999999999999999999775 79999999999999999999998764
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2e-10 Score=132.11 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=116.7
Q ss_pred ccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---------CCceEEEEecChHHHHHHHHHhcCCcce-
Q 003170 247 AMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSW- 316 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---------~RGFAFVeF~~i~DA~~A~~~L~G~~~~- 316 (842)
+-+....++ |||-||.-+.|.++|+..|.++|.|-++.|.. +.|||||+|.+.++|..|++.|||+.+-
T Consensus 509 a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 509 AEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhccccchh-hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 345566666 99999999999999999999999999998743 3399999999999999999999999775
Q ss_pred ---EEEEecccc-CCcccccccc-ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeec----CCCceeeEEecCh
Q 003170 317 ---RVKFMDVGL-GTKGVINGVA-VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL----SCEGALLMEFRTP 387 (842)
Q Consensus 317 ---RIrF~r~~l-Gsrg~~~Gva-~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl----~~r~~afVEF~s~ 387 (842)
.++|..... ++.| --+. -+.+..|||=||+=+.++.||..-|-.||-+-.+++..- ..+.++||+|.|+
T Consensus 588 H~l~lk~S~~k~~~~~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 588 HKLELKISENKPASTVG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred ceEEEEeccCccccccc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 666665110 1111 0011 144789999999999999999999988766544333222 2255589999999
Q ss_pred hhHHHHHHHhhhcc
Q 003170 388 EEATTAMAHLRQHR 401 (842)
Q Consensus 388 edAa~Am~~lrg~R 401 (842)
+||.+||.+|...+
T Consensus 666 ~ea~nA~~al~STH 679 (725)
T KOG0110|consen 666 REAKNAFDALGSTH 679 (725)
T ss_pred HHHHHHHHhhcccc
Confidence 99999998877443
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.09 E-value=6.4e-10 Score=106.02 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=89.9
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEec-
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD- 322 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r- 322 (842)
.+.||||||+.++++++|+++|.+||+|..+.+. ..||||||+|.+.++|..|++.|+|..+. +|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 7999999999999999999999999999888874 47799999999999999999999998765 444432
Q ss_pred -cccCCccc-----------cccc--cccccceEEEccCCCchhHHHHHHHHhhcccc
Q 003170 323 -VGLGTKGV-----------INGV--AVGSCFHVYVGNIPNQWAKDEILHESYKVVYK 366 (842)
Q Consensus 323 -~~lGsrg~-----------~~Gv--a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~ 366 (842)
...-.... ..+. .......+|++++...+..+++...+...+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDI 252 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccc
Confidence 11000100 0000 11468899999999999999999999998776
No 36
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=2.7e-10 Score=119.99 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=61.5
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EEEEec
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMD 322 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r 322 (842)
.++||||||+.++||+||++.|+.||+|++|++.+ .+|||||+|++.++|+.|+. |+|..++ +|...+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 68999999999999999999999999999999975 57999999999999999995 9999887 555544
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5.5e-10 Score=116.47 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=64.3
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCc----ceEEEEecc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHF----SWRVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~----~~RIrF~r~ 323 (842)
++.|=|-||+.+.+|.||+++|.+||+|..|.+++ +||||||.|++.+||.+|++.|+|.- +.|+|+.++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 44599999999999999999999999999999975 89999999999999999999999983 338998876
Q ss_pred c
Q 003170 324 G 324 (842)
Q Consensus 324 ~ 324 (842)
.
T Consensus 269 ~ 269 (270)
T KOG0122|consen 269 S 269 (270)
T ss_pred C
Confidence 3
No 38
>smart00362 RRM_2 RNA recognition motif.
Probab=99.05 E-value=6.5e-10 Score=87.66 Aligned_cols=60 Identities=28% Similarity=0.466 Sum_probs=56.0
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEecCC----ceEEEEecChHHHHHHHHHhcCCcc
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK----GFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~R----GFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+|||+||+.+++++||++.|.+||+|..+.+...+ |||||+|.+.++|.+|++.|+|..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 48999999999999999999999999999988755 9999999999999999999999754
No 39
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=4.6e-10 Score=119.55 Aligned_cols=77 Identities=23% Similarity=0.431 Sum_probs=71.4
Q ss_pred eeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhc
Q 003170 238 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIR 311 (842)
Q Consensus 238 v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~ 311 (842)
+|=-..|+-|.+ -|.++|||+-|..+++|+.|+.+|++||+|+.|.+++ +||||||+|++..|.+.|.+..+
T Consensus 87 ~wdP~~dp~a~g--DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 87 LWDPNNDPNAIG--DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred hcCCCCCCcccC--CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 676678888877 8999999999999999999999999999999999864 89999999999999999999999
Q ss_pred CCcce
Q 003170 312 NHFSW 316 (842)
Q Consensus 312 G~~~~ 316 (842)
|..|-
T Consensus 165 G~~Id 169 (335)
T KOG0113|consen 165 GIKID 169 (335)
T ss_pred Cceec
Confidence 99875
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.2e-10 Score=118.71 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=91.4
Q ss_pred ccCCCCCCCCC--CCCCCCccccccccCCCCCCC---CCccc----ccccceeeeccCCccc-----cccCCCCCeEEec
Q 003170 195 FRNNSFEGRNH--FPGRSSSEGASNALLSPNHHL---PVPYA----STTSQIVWYFDEDPAA-----MDIFSASKQLWLG 260 (842)
Q Consensus 195 ~~~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~---p~~~~----g~~~~~v~~~~g~~~~-----~~v~s~Sr~LwVG 260 (842)
.|.++..+.++ ||-|-..|.|.|+|..||+-- -.++. -|-+.- .|++.. -.-..-.+.||||
T Consensus 95 irD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~----n~~~ltfdeV~NQssp~NtsVY~G 170 (321)
T KOG0148|consen 95 IRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEM----NGKPLTFDEVYNQSSPDNTSVYVG 170 (321)
T ss_pred eecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcccc----CCCCccHHHHhccCCCCCceEEeC
Confidence 45566677666 888888899999999999843 22220 000110 122222 2223446899999
Q ss_pred CCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 261 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 261 nL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
||.+..||++||..|++||+|-.|++++.+|||||-|+..|-|.+|+..|+|+.+.
T Consensus 171 ~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~ 226 (321)
T KOG0148|consen 171 NIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIG 226 (321)
T ss_pred CcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeC
Confidence 99999999999999999999999999999999999999999999999999999876
No 41
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=5.5e-10 Score=104.54 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
.++-|||.||+-++|.+|.-++|++||+|+.+++.. -||.|||-|+|+.||++|++.|.|..+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 367899999999999999999999999999999975 789999999999999999999999853
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.8e-09 Score=113.67 Aligned_cols=191 Identities=16% Similarity=0.188 Sum_probs=129.1
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-+||+.-..+.|..+|..+|+-.=+ ..++..-+..|-. |.+ ..-+|||..|+-..|..|||.+|++||.|-.
T Consensus 85 YGFVNYv~p~DAe~AintlNGLrLQ------~KTIKVSyARPSs-~~I-k~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 85 YGFVNYVRPKDAEKAINTLNGLRLQ------NKTIKVSYARPSS-DSI-KDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred cceeeecChHHHHHHHhhhcceeec------cceEEEEeccCCh-hhh-cccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 4699988889999999988875521 0011211222221 111 2458999999999999999999999999976
Q ss_pred EEEe------cCCceEEEEecChHHHHHHHHHhcCCcce------EEEEec--------------------cccCC----
Q 003170 284 FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMD--------------------VGLGT---- 327 (842)
Q Consensus 284 V~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~r--------------------~~lGs---- 327 (842)
-++. -+||.+||-|....+|+.|++.|+|+.+- .|+|+. .+.|.
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 6653 39999999999999999999999999653 778871 11111
Q ss_pred --cc---------------------ccccccc-------cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC-
Q 003170 328 --KG---------------------VINGVAV-------GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS- 375 (842)
Q Consensus 328 --rg---------------------~~~Gva~-------~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~- 375 (842)
|. .|.|.+. +.---|+|=|+++..++--|-.-|-.||-.-. --++|+.
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 00 0122221 22345788888888743333333333322211 1234444
Q ss_pred --CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 376 --CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 376 --~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
++.+.||..-+-|||+-||+.|+|+|.
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~l 345 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRL 345 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccc
Confidence 456799999999999999999999996
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=110.63 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=119.2
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEE-ecCCc------eEEEEecChHHHHHHHHHhcCCcce--
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF-FPIKG------FALVEYINIIDAIRAREYIRNHFSW-- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~-~~~RG------FAFVeF~~i~DA~~A~~~L~G~~~~-- 316 (842)
..-|...+-|+|||..|+.||--.||--+|.+|-=-|.--+ +.+|+ +|||.|.+..+|++||++|||-+.-
T Consensus 26 ~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE 105 (284)
T KOG1457|consen 26 LLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPE 105 (284)
T ss_pred cccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccc
Confidence 44455566799999999999999999999999977775554 33554 9999999999999999999998653
Q ss_pred -----EEEEecccc--------CCccc-----------------------------------------------------
Q 003170 317 -----RVKFMDVGL--------GTKGV----------------------------------------------------- 330 (842)
Q Consensus 317 -----RIrF~r~~l--------Gsrg~----------------------------------------------------- 330 (842)
||+|+++.. |+-|.
T Consensus 106 ~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a 185 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA 185 (284)
T ss_pred cCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh
Confidence 999986532 11110
Q ss_pred ----------------cccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCce---eeEEecChhhHH
Q 003170 331 ----------------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA---LLMEFRTPEEAT 391 (842)
Q Consensus 331 ----------------~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~---afVEF~s~edAa 391 (842)
-.|-....|.+|+|+|+++..+.||+..-|..+-=|. +-.+..++. ||+||+.+|.|+
T Consensus 186 ~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~---~l~~~~~~g~~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 186 PDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFH---ILKIRARGGMPVAFADFEEIEQAT 262 (284)
T ss_pred hhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCce---EEEEecCCCcceEeecHHHHHHHH
Confidence 0022224589999999999999999988888863333 333355554 999999999999
Q ss_pred HHHHHhhhccc
Q 003170 392 TAMAHLRQHRK 402 (842)
Q Consensus 392 ~Am~~lrg~R~ 402 (842)
.||.||+|.-+
T Consensus 263 ~am~~lqg~~~ 273 (284)
T KOG1457|consen 263 DAMNHLQGNLL 273 (284)
T ss_pred HHHHHhhccee
Confidence 99999999886
No 44
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.97 E-value=6.7e-09 Score=107.18 Aligned_cols=151 Identities=14% Similarity=0.217 Sum_probs=120.0
Q ss_pred cCCCCCeEEecCCCCccCHHHHHH----hccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce----EE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRF----QIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW----RV 318 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~----~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RI 318 (842)
...++.+|||-||...+-.+||+. +|++||.|.+|...+ -||=|||.|.++.-|-.|++.|+|.... ||
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344555999999999999999999 999999999999864 8899999999999999999999999765 88
Q ss_pred EEeccc--cCCc--c---------------------ccccc----------------cccccceEEEccCCCchhHHHHH
Q 003170 319 KFMDVG--LGTK--G---------------------VINGV----------------AVGSCFHVYVGNIPNQWAKDEIL 357 (842)
Q Consensus 319 rF~r~~--lGsr--g---------------------~~~Gv----------------a~~~s~~LwVG~Iss~~~kEEi~ 357 (842)
-|+... ..++ | ..||- ...++..|.+=+|++.++.|.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 777321 1111 0 12221 13689999999999999988888
Q ss_pred HHHhhccccCCceeeecCCCce-eeEEecChhhHHHHHHHhhhccc
Q 003170 358 HESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 358 ~E~~k~g~~g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.-+..+.=+.+ ++.+..++- |||||.+-..|..|+-++++-++
T Consensus 165 ~lf~qf~g~ke--ir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~i 208 (221)
T KOG4206|consen 165 DLFEQFPGFKE--IRLIPPRSGIAFVEFLSDRQASAAQQALQGFKI 208 (221)
T ss_pred HHHhhCcccce--eEeccCCCceeEEecchhhhhHHHhhhhcccee
Confidence 88877644444 444554544 99999999999999999998887
No 45
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=6.6e-10 Score=114.73 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=67.8
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEE------ecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~------~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
..-|.||||.|..+|+|.-|.++|-.||.|.+|.+ .+-||||||+|+-.+||.+|++.|++..++ ||.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999997 468999999999999999999999999988 88999
Q ss_pred ccc
Q 003170 322 DVG 324 (842)
Q Consensus 322 r~~ 324 (842)
++-
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 874
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.4e-09 Score=104.87 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
-..|++||||||+-.++|+.|-++|+++|+|..|.+. .+=||+||+|...+||++|+++++|+.+- ||.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3569999999999999999999999999999999974 36699999999999999999999999764 6654
No 47
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=3.2e-09 Score=83.27 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=52.5
Q ss_pred ecCCCCccCHHHHHHhccccCCcceEEEecC------CceEEEEecChHHHHHHHHHhcCCcc
Q 003170 259 LGSFGPEASEAHIRFQIDRFGPLEHFFFFPI------KGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 259 VGnL~~dvtE~dL~~~F~rfGpIesV~~~~~------RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
|+||+.+++++||+..|.+||+|+.+.+... +|||||+|.+.++|.+|++.|+|..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 6899999999999999999999999998653 68999999999999999999998754
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=7.7e-10 Score=122.15 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=74.0
Q ss_pred eeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcC
Q 003170 238 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRN 312 (842)
Q Consensus 238 v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G 312 (842)
|+|-||..-- + ...++||||-|+-.+||.|+++.|++||.||++++.+ +||||||.|...+-|..|+++|+|
T Consensus 111 vk~Ad~E~er--~-~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERER--I-VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhc--c-ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 6766765422 1 5678999999999999999999999999999999976 999999999999999999999999
Q ss_pred Ccce-------EEEEeccc
Q 003170 313 HFSW-------RVKFMDVG 324 (842)
Q Consensus 313 ~~~~-------RIrF~r~~ 324 (842)
+... -|||+|..
T Consensus 188 ~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ceeeccCCCceEEEecccC
Confidence 9543 88999975
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=98.87 E-value=3.6e-09 Score=118.31 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=57.7
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec--CCceEEEEecCh--HHHHHHHHHhcCCcc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINI--IDAIRAREYIRNHFS 315 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~--~RGFAFVeF~~i--~DA~~A~~~L~G~~~ 315 (842)
.-.||||||+.+|+++||+..|..||.|.+|.|.+ .||||||+|... .++.+|+..|+|...
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 46899999999999999999999999999999976 899999999987 679999999999863
No 50
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.86 E-value=1.9e-09 Score=110.54 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=62.6
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEecc
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDV 323 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~ 323 (842)
-..|-|-||..-+|-+||+.+|++||.|-+|.|- .+||||||-|.+.+||++|+++|||..+- ||.|++=
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 4579999999999999999999999999999984 38999999999999999999999999765 6666553
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.85 E-value=6.4e-09 Score=83.77 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=42.2
Q ss_pred HHHhccccCCcceEEEecCC-ceEEEEecChHHHHHHHHHhcCCcce
Q 003170 271 IRFQIDRFGPLEHFFFFPIK-GFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 271 L~~~F~rfGpIesV~~~~~R-GFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
|.++|++||+|+++.+.+.+ |+|||+|.+.+||+.|++.|+|..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~ 47 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN 47 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 67899999999999999877 99999999999999999999999754
No 52
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.85 E-value=1.1e-08 Score=80.99 Aligned_cols=60 Identities=30% Similarity=0.474 Sum_probs=56.0
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEecC-----CceEEEEecChHHHHHHHHHhcCCcc
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-----RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
.|+|++|+.++++++|++.|.+||+|..+.+... +|+|||+|.+.++|..|++.|+|..+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999999999998763 79999999999999999999999853
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.85 E-value=6.5e-09 Score=108.69 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=58.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec---CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
....||||||++.+||+||++.|+.||+|++|.+.+ .+|||||+|++.++|+.|+ .|+|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~ 69 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV 69 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC
Confidence 346899999999999999999999999999999986 4589999999999999999 79999876
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.79 E-value=2.4e-08 Score=112.96 Aligned_cols=146 Identities=22% Similarity=0.311 Sum_probs=101.2
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEe-----
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFM----- 321 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~----- 321 (842)
..||||||-.+++|++|+..|+.||+|+.|-.. +.+||+|++|.+.+||++|.+.|+|..+- -|++.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 339999999999999999999999999999864 47999999999999999999999996443 22211
Q ss_pred -----------------cccc--CCcc-------cccccc---------------ccccceEE-----EccCCC------
Q 003170 322 -----------------DVGL--GTKG-------VINGVA---------------VGSCFHVY-----VGNIPN------ 349 (842)
Q Consensus 322 -----------------r~~l--Gsrg-------~~~Gva---------------~~~s~~Lw-----VG~Iss------ 349 (842)
+.++ |+.| .+-|.. ......+. |.++-+
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 1111 2222 000000 00111111 222211
Q ss_pred -------------------------chhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 350 -------------------------QWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 350 -------------------------~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
+-++|+|.+|+-|+|+.--+ +.|.-+.++.||.|.+.|+|..|...|+|.=
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi-~vd~ns~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHI-FVDKNSAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEE-EEccCCCceEEEecCcHHHHHHHHHHHhhhh
Confidence 23678999999887665433 4455566789999999999999999999753
No 55
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=3.3e-09 Score=124.68 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=120.0
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecC-----CceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-----KGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-----RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
|-+-++++|++|||...+++.+|+..|+.||.|+.|.|..+ --||||.|.+..-|..|+-.|.|..|. ||.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 45567999999999999999999999999999999998653 479999999999999999999998765 444
Q ss_pred EeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC-CceeeEEecChhhHHHHHHHhh
Q 003170 320 FMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-EGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 320 F~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~-r~~afVEF~s~edAa~Am~~lr 398 (842)
+... .++++..||||++.+-...+.+..||-.| |++.+|++.- +-+|||.|++++-|..||.+|+
T Consensus 447 lG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f---Gpir~Idy~hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 447 LGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF---GPIRIIDYRHGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred cccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc---CcceeeecccCCcceeeecccCccchhhHHHHh
Confidence 3221 25789999999999999999999999996 5555666654 3459999999999999999999
Q ss_pred hcccC
Q 003170 399 QHRKS 403 (842)
Q Consensus 399 g~R~e 403 (842)
|.-+-
T Consensus 513 gap~G 517 (975)
T KOG0112|consen 513 GAPLG 517 (975)
T ss_pred cCcCC
Confidence 98763
No 56
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=98.69 E-value=1.1e-09 Score=99.87 Aligned_cols=112 Identities=24% Similarity=0.417 Sum_probs=76.4
Q ss_pred ccccccccCcceeeEEEeeecccccccc-cCCCCCCCCCccccccccchhcccccccccC-CCCCcceeEecC-----CC
Q 003170 697 WQGALCKSGVHYCTIYAQREESDICKYT-HDISEPAEWPAKLDMTKRTDFRHVKSTFTST-PPNKREVCRLVP-----SS 769 (842)
Q Consensus 697 WqG~laKsG~~~C~~~~~~v~~~~~k~~-~~~~ep~~WP~~lD~T~RTdld~Le~lFa~t-p~~~r~v~~l~P-----~S 769 (842)
|+|+|...++..|.+.|+.+.-+ |... +...+.+.||..+++.-|.+.+.+.++.... .+..++++.+.. ++
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~-~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~ 79 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGN-CDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDS 79 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE--HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcc-hhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccC
Confidence 99999999999999999998755 5454 5666678899999999999999988775433 334468877777 44
Q ss_pred CCCCchHHHHHHHHhhcCccceeeccchhhhHhhhhhccC
Q 003170 770 PGDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILP 809 (842)
Q Consensus 770 ~~d~~~~qdFI~yLkqk~rAgVik~~~~~~~~~rlL~llP 809 (842)
+.+...|+.|++||++|+|+||+++......+-+-|||+|
T Consensus 80 ~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 80 NSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 5568889999999999999999998873322345889887
No 57
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2e-08 Score=108.46 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=62.6
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe----cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEec
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF----PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 322 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r 322 (842)
+.|+|.||+=.-.|-||+..|++||+|-+|-|. -+|||+||.|++++||++|+++|+|+.+- +||+-.
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 789999999999999999999999999999974 39999999999999999999999999875 777654
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.67 E-value=2.6e-08 Score=107.68 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=100.0
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHH----hcCCcce------
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREY----IRNHFSW------ 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~----L~G~~~~------ 316 (842)
.+++|+||.|+.+++++.|++-|++||.|.+..+.+ +|||+||.|.+..--.+++.. ++|+.+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 679999999999999999999999999999999864 899999999976655554433 6665432
Q ss_pred EEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCC----ceeeecCCCceeeEEecChhhHHH
Q 003170 317 RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP----YMVTDLSCEGALLMEFRTPEEATT 392 (842)
Q Consensus 317 RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~----~~~~dl~~r~~afVEF~s~edAa~ 392 (842)
|-+..+.. .-...+.+.||+|+..++.+++.+.|.++|++-. ........+.+.||.|++.|..-.
T Consensus 85 r~~~~~~~----------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 85 REDQTKVG----------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred cccccccc----------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 11111111 0135789999999999999999999999997644 244556778889999999885433
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=1.3e-07 Score=107.21 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=117.2
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEeccc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFMDVG 324 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~ 324 (842)
.+|||++|+.+++.++|++.|+.+|||....++ ..|||+||.|--.+|+.+|+..+.++.+- +++++..-
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999987765 38999999999999999999999997553 55555221
Q ss_pred cCCc----c-------cccc------ccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC---CceeeEEe
Q 003170 325 LGTK----G-------VING------VAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC---EGALLMEF 384 (842)
Q Consensus 325 lGsr----g-------~~~G------va~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~---r~~afVEF 384 (842)
.-++ | .+.. -...+--.|.|-|.|=+..+++|-.-|.+||++.++-|..=.+ .++|||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 1110 0 0111 0012355799999999999999999999999987654432221 25699999
Q ss_pred cChhhHHHHHHHhhhcccC
Q 003170 385 RTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 385 ~s~edAa~Am~~lrg~R~e 403 (842)
-..-||..||+.+++..++
T Consensus 166 k~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKID 184 (678)
T ss_pred eeHHHHHHHHHhccCceec
Confidence 9999999999999999985
No 60
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=7.7e-08 Score=111.33 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=66.1
Q ss_pred Ccccccc-CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe---------cCCceEEEEecChHHHHHHHHHhcCC
Q 003170 244 DPAAMDI-FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF---------PIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 244 ~~~~~~v-~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~---------~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
.++..|. +.-+.|||||||.+.++|..|...|++||||-+|++. +.|.++||.|-+..||++|++.|||.
T Consensus 163 ~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 163 RPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred CCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce
Confidence 4566666 6779999999999999999999999999999999984 58899999999999999999999998
Q ss_pred cce
Q 003170 314 FSW 316 (842)
Q Consensus 314 ~~~ 316 (842)
-+.
T Consensus 243 iv~ 245 (877)
T KOG0151|consen 243 IVM 245 (877)
T ss_pred eee
Confidence 654
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=4.8e-08 Score=104.27 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCCCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcce
Q 003170 204 NHFPGRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH 283 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes 283 (842)
-+||-.|.+.-+..+|-||+++.= .|..-. |- ++-.-.+++.+|.||||++..+..||++.|++|||+..
T Consensus 38 YgFVHiEdktaaedairNLhgYtL---hg~nIn-Ve------aSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpvie 107 (346)
T KOG0109|consen 38 YGFVHIEDKTAAEDAIRNLHGYTL---HGVNIN-VE------ASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIE 107 (346)
T ss_pred cceEEeecccccHHHHhhccccee---cceEEE-EE------eccccCCCccccccCCCCccccCHHHhhhhcccCCcee
Confidence 479999999999999999999873 332200 11 22233678999999999999999999999999999999
Q ss_pred EEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 284 FFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 284 V~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..|.+ +||||.|+..+||.+|++.|||+.+-
T Consensus 108 cdivk--dy~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 108 CDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred eeeec--ceeEEEEeeccchHHHHhcccccccc
Confidence 88865 89999999999999999999998654
No 62
>smart00361 RRM_1 RNA recognition motif.
Probab=98.50 E-value=2.1e-07 Score=78.94 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=42.3
Q ss_pred HHHHHHhcc----ccCCcceEE-E-e-------cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 268 EAHIRFQID----RFGPLEHFF-F-F-------PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 268 E~dL~~~F~----rfGpIesV~-~-~-------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
++||++.|+ +||.|.+|. + . .+||||||+|.+.+||.+|++.|+|+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999985 3 2 26999999999999999999999998653
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.46 E-value=8.8e-08 Score=108.55 Aligned_cols=143 Identities=16% Similarity=0.136 Sum_probs=108.6
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcceEEEEe------
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFM------ 321 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~------ 321 (842)
.+++|+=-|+..+++.||.+.|+.+|+|++|.+. +++|.|||+|-|.+---.|+ +|.|+.+.-+..+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 5667777788899999999999999999999974 58999999999766555555 9999976522111
Q ss_pred --------ccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCce-eeec---CCCceeeEEecChhh
Q 003170 322 --------DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYM-VTDL---SCEGALLMEFRTPEE 389 (842)
Q Consensus 322 --------r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~-~~dl---~~r~~afVEF~s~ed 389 (842)
-+.++.+| +.....+ |||||++...+.+.+...|.-||.+.-+. .+|. .++++.||+|...|+
T Consensus 258 eknr~a~~s~a~~~k~----~~~p~~r-l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 258 EKNRAANASPALQGKG----FTGPMRR-LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHhccccccccc----cccchhh-hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 11222222 1122233 99999999999999999999988876642 2332 467889999999999
Q ss_pred HHHHHHHhhhccc
Q 003170 390 ATTAMAHLRQHRK 402 (842)
Q Consensus 390 Aa~Am~~lrg~R~ 402 (842)
|..|.+.|||.-+
T Consensus 333 ar~a~e~lngfel 345 (549)
T KOG0147|consen 333 ARKALEQLNGFEL 345 (549)
T ss_pred HHHHHHHhcccee
Confidence 9999999998543
No 64
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1.3e-07 Score=107.35 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce--EEEEeccccCC
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMDVGLGT 327 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r~~lGs 327 (842)
+.+++.|||=||+..|++++|+.+|+.||.|..|+..+ .+|-.||+|.|++||++|+++|++..+. ||+ +++ |+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k--~~~-~~ 148 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK--RPG-GA 148 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc--CCC-cc
Confidence 56799999999999999999999999999999988766 8899999999999999999999999876 666 443 44
Q ss_pred c
Q 003170 328 K 328 (842)
Q Consensus 328 r 328 (842)
+
T Consensus 149 ~ 149 (549)
T KOG4660|consen 149 R 149 (549)
T ss_pred c
Confidence 3
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=7.2e-07 Score=103.62 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=130.8
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCce-EEEEecChHHHHHHHHHhcCCcce----EEEEecccc---
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF-ALVEYINIIDAIRAREYIRNHFSW----RVKFMDVGL--- 325 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGF-AFVeF~~i~DA~~A~~~L~G~~~~----RIrF~r~~l--- 325 (842)
.+-+.||||+-++..++|...|.+||+|..| ..++-|- |+|+|.+..||.+|.+.|..+... +.+-+....
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rv-llp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~ 463 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRV-LLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTE 463 (725)
T ss_pred cceeeeccCccccccHHHHHHhhccccccee-ecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccC
Confidence 4778999999999999999999999999999 5555565 999999999999999999998643 111110000
Q ss_pred -----------CCc-------c--cccc----------------ccc---cccceEEEccCCCchhHHHHHHHHhhcccc
Q 003170 326 -----------GTK-------G--VING----------------VAV---GSCFHVYVGNIPNQWAKDEILHESYKVVYK 366 (842)
Q Consensus 326 -----------Gsr-------g--~~~G----------------va~---~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~ 366 (842)
+++ . ..+| ++. +.++ |||=|..=.++.|.++..|++.|.+
T Consensus 464 ~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNlnf~Tt~e~l~~~F~k~G~V 542 (725)
T KOG0110|consen 464 DPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNLNFDTTLEDLEDLFSKQGTV 542 (725)
T ss_pred CccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcCCcccchhHHHHHHHhcCeE
Confidence 000 0 0011 111 2233 9999999999999999999998886
Q ss_pred CCceeee-------cCCCceeeEEecChhhHHHHHHHhhhcccC----CCCCCCCCCCCCCCcccccCCCCCCC-CCcEE
Q 003170 367 GPYMVTD-------LSCEGALLMEFRTPEEATTAMAHLRQHRKS----RSNYLPPNTGPANAAMSQIDGARSVP-AAPIH 434 (842)
Q Consensus 367 g~~~~~d-------l~~r~~afVEF~s~edAa~Am~~lrg~R~e----rSsf~~r~ss~~~~Pmr~eD~~~svP-SnVLw 434 (842)
=-+.|.- +.+-+++||||.++++|.+|++.|+|+.++ -+.+.. +- ...-+. .+...-.. +.+|.
T Consensus 543 lS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k--~~~~~g-K~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 543 LSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NK--PASTVG-KKKSKKKKGTKILV 618 (725)
T ss_pred EEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Cc--cccccc-cccccccccceeee
Confidence 4332222 334488999999999999999999999986 233332 00 000011 11100122 34444
Q ss_pred EeccC---cccccccccCCCCceeec
Q 003170 435 VDIRS---NRLGNISAGGFGSPHTAP 457 (842)
Q Consensus 435 ig~p~---~~~~n~a~~~fGei~r~k 457 (842)
=.+|- +.-.+--|..||.|.-+.
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvR 644 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVR 644 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeec
Confidence 45663 234566678899984433
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=2.7e-07 Score=96.33 Aligned_cols=60 Identities=18% Similarity=0.343 Sum_probs=54.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIR 311 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~ 311 (842)
+.-.++|||+|.-.+++++|+.-|++||.|....|. ++|||+||.|+|.+-|++|++..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~ 75 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN 75 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC
Confidence 345689999999999999999999999999988763 699999999999999999998754
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.4e-07 Score=97.12 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=59.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
..|+||||-|...-+|+|++.+|..||.||.+++.+ +||+|||.|..-.||-.|++.|+|...
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqT 85 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQT 85 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccccc
Confidence 578999999999999999999999999999999965 899999999999999999999999853
No 68
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.35 E-value=7.5e-07 Score=100.23 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=58.5
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+.+|||||+.+++|++|.++|+..|+|-+++++ ++|||||++|.+.++|..|++.|+|..+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~ 86 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN 86 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC
Confidence 899999999999999999999999999999985 48999999999999999999999998643
No 69
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=5e-06 Score=94.78 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=109.2
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce----EEEE
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW----RVKF 320 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF 320 (842)
++-+--.|-|.||+=...+.||.-+|++||.+..|.|-+ =.|||||.|.+.-||+.|++.|+|+.+. -|.|
T Consensus 113 v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 113 VDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred ccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 344466899999999999999999999999999999843 3499999999999999999999999775 2333
Q ss_pred e---ccccCCc-----------------------c----------------cccc-------------------------
Q 003170 321 M---DVGLGTK-----------------------G----------------VING------------------------- 333 (842)
Q Consensus 321 ~---r~~lGsr-----------------------g----------------~~~G------------------------- 333 (842)
+ +.+-++. | -.+|
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 2 0000000 0 0111
Q ss_pred ccc----------ccc----ceEEEccCCCchhHHHHHHHHhhccccCCc-eeeec---CCCceeeEEecChhhHHHHHH
Q 003170 334 VAV----------GSC----FHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDL---SCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 334 va~----------~~s----~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~dl---~~r~~afVEF~s~edAa~Am~ 395 (842)
+.. ..+ ++|+|-|++=..++|||-++|.+||-.--. -+++= .+.++|||.|.+.++|..++.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 100 122 899999999999999999999997654321 11111 456779999999999999887
Q ss_pred Hh
Q 003170 396 HL 397 (842)
Q Consensus 396 ~l 397 (842)
..
T Consensus 353 ~A 354 (678)
T KOG0127|consen 353 AA 354 (678)
T ss_pred hc
Confidence 55
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=7.9e-07 Score=96.83 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=63.0
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.-.++....||||+|.+.++|.||+..|.+||.|+++++...+++|||+|....-|+.|.+.+-...+.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI 290 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVI 290 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeee
Confidence 445677899999999999999999999999999999999999999999999999999999988765443
No 71
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.23 E-value=6.4e-06 Score=91.46 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=116.9
Q ss_pred CCCeEEecCCCCc-cCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce----EEEEe---cc
Q 003170 253 ASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM---DV 323 (842)
Q Consensus 253 ~Sr~LwVGnL~~d-vtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~---r~ 323 (842)
.++-|-|-||-.+ ||.+-|--+|+-||.|-.|++.. -+--|+|.|-|...|.-|++.|+|+.+| ||.|. ++
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 3688999999877 99999999999999999999865 5578999999999999999999999887 44433 12
Q ss_pred ccCC-----ccc--------c-----ccccc-----cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecC-CCce
Q 003170 324 GLGT-----KGV--------I-----NGVAV-----GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGA 379 (842)
Q Consensus 324 ~lGs-----rg~--------~-----~Gva~-----~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~-~r~~ 379 (842)
+++. +|. + .|... .+|.+|-..+||..++.|++.+-|..-|..+ -+|+++. +++.
T Consensus 376 qlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~v-kafkff~kd~km 454 (492)
T KOG1190|consen 376 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQV-KAFKFFQKDRKM 454 (492)
T ss_pred cCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceE-EeeeecCCCcce
Confidence 2222 110 1 12222 5788999999999999999998888765543 3677887 6688
Q ss_pred eeEEecChhhHHHHHHHhhhcc
Q 003170 380 LLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 380 afVEF~s~edAa~Am~~lrg~R 401 (842)
|++.+++.|+|+.|..-++.+.
T Consensus 455 al~q~~sveeA~~ali~~hnh~ 476 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHY 476 (492)
T ss_pred eecccCChhHhhhhcccccccc
Confidence 9999999999999988776554
No 72
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=5.2e-06 Score=94.69 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=69.2
Q ss_pred cCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 242 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 242 ~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+..++..++---.++++||+|+...++..++|+.+-||+|..+..+. ++||||-||.+.-..-.|+..|+|+.+
T Consensus 277 ~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 277 GLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred CCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 77778888877889999999999999999999999999999999753 899999999999999999999999987
Q ss_pred e
Q 003170 316 W 316 (842)
Q Consensus 316 ~ 316 (842)
+
T Consensus 357 g 357 (500)
T KOG0120|consen 357 G 357 (500)
T ss_pred c
Confidence 6
No 73
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.16 E-value=2.7e-06 Score=68.92 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=50.8
Q ss_pred EEEccCCCchhHHHHHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 342 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 342 LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|||||++..++.+||.+-|.++|.+..+.+..- ..+.+|||+|++.+||..|+..++++..
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 799999999999999999999887755433221 2355699999999999999999999875
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.16 E-value=6.3e-07 Score=90.91 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=80.4
Q ss_pred CCCCCCCCccccccccCCCCCC---CCCcccccccceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCC
Q 003170 204 NHFPGRSSSEGASNALLSPNHH---LPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGP 280 (842)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~---~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGp 280 (842)
-+|+.+.+||.|.=+|.=||.- -..|++.+.++ ++ .-.++ +-+||||||.+.+.|.-|-+.|+.||.
T Consensus 53 ygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~-----~~--~nl~v---ganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 53 YGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA-----HQ--KNLDV---GANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred eeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc-----cc--ccccc---cccccccccCcchhHHHHHHHHHhccc
Confidence 3589999999988777655511 13344443321 11 11222 279999999999999999999999999
Q ss_pred cceEE-------EecCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 281 LEHFF-------FFPIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 281 IesV~-------~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
|-+.= ...++|||||+|.+.+-|.+|++.|+|+-+| ++.++
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 98621 2358999999999999999999999999888 55554
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=6.2e-07 Score=91.09 Aligned_cols=72 Identities=18% Similarity=0.311 Sum_probs=63.0
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce--EEEEec
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 322 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r 322 (842)
-+.|--+|||+|+.+.||.||-..|++||.|.+|...| ++||||.-|+|-+--+-|+..|+|-.+. .||+..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 34566799999999999999999999999999999765 8999999999999999999999998765 444443
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=3.8e-06 Score=84.97 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=56.5
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccCCC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRS 405 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~erS 405 (842)
-.+.|||||+.+.++|.||+.+|.++|...-.-| ....-.+|||||+.+.||.-|...|+|+.+.++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWv-ArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWV-ARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEE-eecCCCceEEeccCcccHHHHHhhcCCccccCc
Confidence 3689999999999999999999999876544333 236678899999999999999999999997533
No 77
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.03 E-value=6.7e-06 Score=80.64 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=59.3
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
--|||-++-..+||+||.++|.-||+|.++-.- -.||||+|+|+...+|-+|+++|||..+. .|.|.
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 358999999999999999999999999998862 28899999999999999999999999765 55544
No 78
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.02 E-value=1.2e-05 Score=77.95 Aligned_cols=73 Identities=12% Similarity=0.081 Sum_probs=58.3
Q ss_pred cccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 331 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 331 ~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.|-+...++.||||+|+..++.|+|.+.|.++|-+..+.+. +- .++.+|||+|.+.|+|..|++.|+++.++
T Consensus 26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334344568899999999999999999999998766554332 22 34678999999999999999999988763
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.98 E-value=2.5e-05 Score=86.22 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=101.3
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce-------------
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------------- 316 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------------- 316 (842)
-..+|--+-|.+|-..|+|+||-++.+.||+|-=|...+-+--|.|+|+||+-|++++...--..+.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySts 106 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTS 106 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchh
Confidence 3456778899999999999999999999999999999998899999999999999998765544332
Q ss_pred -EEEEeccccCCccccccccccccceEEEccCCCc-hhHHHHHH-HHhhccccCCceeeecCCCce--eeEEecChhhHH
Q 003170 317 -RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQ-WAKDEILH-ESYKVVYKGPYMVTDLSCEGA--LLMEFRTPEEAT 391 (842)
Q Consensus 317 -RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~-~~kEEi~~-E~~k~g~~g~~~~~dl~~r~~--afVEF~s~edAa 391 (842)
+|+ |.+.-+ ..+|+.|-+-=+-+. -+.-++++ .+--.|+. .+|..+.- +. |.|||+++|-|.
T Consensus 107 q~i~--R~g~es--------~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkV--lRIvIfkk-ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 107 QCIE--RPGDES--------ATPNKVLLFTILNPQYPITVDVLYTICNPQGKV--LRIVIFKK-NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred hhhc--cCCCCC--------CCCCeEEEEEeecCccccchhhhhhhcCCCCce--EEEEEEec-cceeeEEeechhHHHH
Confidence 222 222222 256777776655554 23334443 33333332 23444433 33 999999999999
Q ss_pred HHHHHhhhccc
Q 003170 392 TAMAHLRQHRK 402 (842)
Q Consensus 392 ~Am~~lrg~R~ 402 (842)
+|++.|||.-|
T Consensus 174 rAk~alNGADI 184 (494)
T KOG1456|consen 174 RAKAALNGADI 184 (494)
T ss_pred HHHhhcccccc
Confidence 99999999876
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.98 E-value=1.2e-05 Score=66.48 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=47.6
Q ss_pred EEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 342 VYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 342 LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|||+||++.++.++|.+.|..+|.+..+.+..-. .++.|||+|.+.++|.+|+..+++...
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 7999999999999999999998876554333221 257799999999999999998886543
No 81
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=1.3e-05 Score=94.24 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=16.8
Q ss_pred hhHhhhhhccCCchhhhccccc
Q 003170 799 SIWARLMFILPYSQDICSMLSI 820 (842)
Q Consensus 799 ~~~~rlL~llP~s~e~~~~L~v 820 (842)
.++.+|.+-+|+.+.+-++-.+
T Consensus 733 ~~iqnLik~lPe~E~l~~L~e~ 754 (1102)
T KOG1924|consen 733 SMIQNLIKHLPEQEQLNKLSEL 754 (1102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 4788999999988777665555
No 82
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.87 E-value=1.7e-05 Score=83.99 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=65.8
Q ss_pred cCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcc------eEEEecCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 242 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLE------HFFFFPIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 242 ~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIe------sV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
+.||-+.+-+...-.||-|.|+++|+.+.|...|.+|=.-- +=+..+++||+||.|+++.|++.|++.|+|+-
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky 256 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY 256 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc
Confidence 48999999999999999999999999999999999996543 33445699999999999999999999999984
No 83
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.84 E-value=2.9e-05 Score=80.18 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=61.9
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhcccc-CCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce----EEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRF-GPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW----RVK 319 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rf-GpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIr 319 (842)
+....-+||+.+....-|.++...|.+| |.+..|+..| +||||||+|++.++|+=|-+.||+-.+. ...
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345568999999999999999999999 8888888754 8999999999999999999999998654 555
Q ss_pred Eecc
Q 003170 320 FMDV 323 (842)
Q Consensus 320 F~r~ 323 (842)
|+-+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 6554
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.81 E-value=0.00026 Score=77.73 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=111.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcce--------EEEec-----CCceEEEEecChHHHHHHHHHhcCCcce--E
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW--R 317 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes--------V~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~--R 317 (842)
...+|||-+|+.|+|-+++.++|++||-|-. |.+++ -+|=|++-|-..+--.-|++.|++..+. .
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4567999999999999999999999998852 44554 7899999999999999999999999775 4
Q ss_pred EEEeccccCCccc--c-----------------------------ccccccccceEEEccCCCc-----------hhHHH
Q 003170 318 VKFMDVGLGTKGV--I-----------------------------NGVAVGSCFHVYVGNIPNQ-----------WAKDE 355 (842)
Q Consensus 318 IrF~r~~lGsrg~--~-----------------------------~Gva~~~s~~LwVG~Iss~-----------~~kEE 355 (842)
|++.+-.+.-||- + +.--....|+|-+-|+=.. -.+|+
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 4444443334331 1 1112245788999888652 24788
Q ss_pred HHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 356 ILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 356 i~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|++|+.|+|-+.-.-+-+-.+.+-+-|.|.+.++|..++..|+|+=-
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 88999996544433332224455599999999999999999998754
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.79 E-value=0.00013 Score=81.49 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=116.5
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEe-cCCce-EEEEecChHHHHHHHHHhcCCcce------EEEEe-----
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGF-ALVEYINIIDAIRAREYIRNHFSW------RVKFM----- 321 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-~~RGF-AFVeF~~i~DA~~A~~~L~G~~~~------RIrF~----- 321 (842)
=.+.|+|+-.-||=+=|-..|++||.+..+.++ +.-|| |+|.|.|..-|-.|+-+|+|+.+. ||.|.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 356899999999999999999999999988765 57787 999999999999999999999873 77654
Q ss_pred -------------ccccCCc------------------------cc-------cccc---cc-c-ccceEEEccCCCchh
Q 003170 322 -------------DVGLGTK------------------------GV-------INGV---AV-G-SCFHVYVGNIPNQWA 352 (842)
Q Consensus 322 -------------r~~lGsr------------------------g~-------~~Gv---a~-~-~s~~LwVG~Iss~~~ 352 (842)
++.+-+. .. .++. -. . .++.|-|-+.-....
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAV 310 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhcc
Confidence 2222111 00 0011 00 1 268999999988888
Q ss_pred HHHHHHHHhhccccCCc-eeeecCCCce-eeEEecChhhHHHHHHHhhhcccC
Q 003170 353 KDEILHESYKVVYKGPY-MVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 353 kEEi~~E~~k~g~~g~~-~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+.|+-+ ||..|+. +|+.|+.++- |+|.+...-.|.-||.||.|.++-
T Consensus 311 T~d~Lftl--FgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~ 361 (492)
T KOG1190|consen 311 TPDVLFTL--FGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY 361 (492)
T ss_pred chhHHHHH--HhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec
Confidence 88888765 5558984 8888888877 999999999999999999999973
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.78 E-value=1.3e-05 Score=83.76 Aligned_cols=65 Identities=15% Similarity=0.283 Sum_probs=57.5
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec--CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP--IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~--~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
..++.+|||.||+++++|++|+.+|.+|--..-+++.. +--.|||+|++++.|.+||..|||..+
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 46789999999999999999999999998887777753 445799999999999999999999753
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=97.71 E-value=8.1e-05 Score=58.62 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=49.1
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeeecCCC----ceeeEEecChhhHHHHHHHhhhccc
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE----GALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r----~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.|||+|++..++.+||.+.|..+|.... +.....+ +++||+|.+.++|..|+..+++...
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--VKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--EEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4899999999999999999998765443 3333443 7899999999999999998887654
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=4.7e-05 Score=74.31 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=54.6
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC-ce----eeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YM----VTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~----~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..||+|||||+|=.++.|||-+=|.+.|-+.. +| ++. ..=.++||||.+.|||..||+++++.|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk-tpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK-TPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc-CccceEEEEEecchhHHHHHHHhccCccc
Confidence 57999999999999999999999988776544 22 222 23346999999999999999999999986
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.60 E-value=0.00015 Score=57.33 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=49.1
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeeecC---CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS---CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.|+|+|++...+.++|...|..+|-+..+.+..-. .++.+||+|.+.++|..|+..+++...
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 48999999999999999999997544333332211 257899999999999999999988753
No 90
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=9.5e-05 Score=81.37 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=68.5
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce---
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW--- 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~--- 316 (842)
---|+.+|-+-|||-.|-|-+|.+||+-+|++||+|.+.-|.+ +--||||+|+|.++.++|.=.|+.-.|-
T Consensus 231 pdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR 310 (479)
T KOG0415|consen 231 PDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR 310 (479)
T ss_pred cccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce
Confidence 3457889999999999999999999999999999999998876 4479999999999999999999997664
Q ss_pred -EEEEecc
Q 003170 317 -RVKFMDV 323 (842)
Q Consensus 317 -RIrF~r~ 323 (842)
.|.|..+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 4456655
No 91
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0041 Score=71.37 Aligned_cols=154 Identities=18% Similarity=0.294 Sum_probs=102.9
Q ss_pred eeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEE--------ecCCc---eEEEEecChHHH---
Q 003170 238 VWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF--------FPIKG---FALVEYINIIDA--- 303 (842)
Q Consensus 238 v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~--------~~~RG---FAFVeF~~i~DA--- 303 (842)
.|....-+---....=|+++|||.|+.+++|+.|..-|.+||++.-=|= .+++| |+|.-|++.+--
T Consensus 243 ~~~~~~~~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 243 TWSGSLPPRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hhccccCCCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 5666666666667777999999999999999999999999999876553 35888 999999976533
Q ss_pred HHHHHHhcCCcceEEEEeccccCCc-----------c--ccc-cccccccceEEEccCCCchhHHHHHHHHhhccccCC-
Q 003170 304 IRAREYIRNHFSWRVKFMDVGLGTK-----------G--VIN-GVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP- 368 (842)
Q Consensus 304 ~~A~~~L~G~~~~RIrF~r~~lGsr-----------g--~~~-Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~- 368 (842)
.+|+..=.++....|.--++ +.| . .++ -...-+.++|+||+++--+.-|||-..+... +|.
T Consensus 323 l~aC~~~~~~~yf~vss~~~--k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l--yGgV 398 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTI--KDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL--FGGV 398 (520)
T ss_pred HHHHhhcccceEEEEecCcc--cccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh--cCce
Confidence 34444423332211110000 000 0 011 0112579999999999999999987777753 444
Q ss_pred -ceeeec-----CCCceeeEEecChhhHHHHHH
Q 003170 369 -YMVTDL-----SCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 369 -~~~~dl-----~~r~~afVEF~s~edAa~Am~ 395 (842)
+.=+|. +++.++-|.|.+...=++|+.
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 222333 467889999999886666654
No 92
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.00011 Score=78.66 Aligned_cols=69 Identities=20% Similarity=0.161 Sum_probs=62.7
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce--EEE
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW--RVK 319 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIr 319 (842)
....|+|||=.|+..-.+.||-..|..||.|.+.+++ .+|-|+||.|.|+.-|..|+.+|||..|+ |++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 4568999999999999999999999999999998876 28899999999999999999999999876 444
No 93
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.45 E-value=0.00011 Score=82.78 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=50.4
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHh
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYI 310 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L 310 (842)
..+|||+||+.|+++++|+++|..||+|....|.. ...||||+|++..++..|+++=
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 34499999999999999999999999999888753 2289999999999999998875
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.44 E-value=0.0016 Score=72.42 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=121.7
Q ss_pred ccccCCCCCeEEecCCCCc-cCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce--EEEEec
Q 003170 247 AMDIFSASKQLWLGSFGPE-ASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 322 (842)
Q Consensus 247 ~~~v~s~Sr~LwVGnL~~d-vtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r 322 (842)
..+--.+++-+-|-.|..+ ..-+.|--+|=.||-|+.|+|.+ -.|.|.||.-|...-++|+..||+..+. +++|.-
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 3345556888999999988 45567889999999999999987 5699999999999999999999999876 554331
Q ss_pred c----------cc------------CCcc--c-cccccc-----cccceEEEccCCCchhHHHHHHHHhhccccCCceee
Q 003170 323 V----------GL------------GTKG--V-INGVAV-----GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT 372 (842)
Q Consensus 323 ~----------~l------------Gsrg--~-~~Gva~-----~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~ 372 (842)
+ -+ ++|- + .-+-|+ .+||+|--=|.+..++.|++++-+-..+.. +..++
T Consensus 360 SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~-~~svk 438 (494)
T KOG1456|consen 360 SKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVP-PTSVK 438 (494)
T ss_pred ccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCC-cceEE
Confidence 1 00 1110 0 011222 479999999999999999999998887666 77777
Q ss_pred ecCCCce----eeEEecChhhHHHHHHHhhhcccC
Q 003170 373 DLSCEGA----LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 373 dl~~r~~----afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.|..++. -++||++.+||..|+..+|.+-++
T Consensus 439 vFp~kserSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 439 VFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred eecccccccccceeeeehHHHHHHHHHHhcccccc
Confidence 7776543 799999999999999999998875
No 95
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.44 E-value=0.00027 Score=83.66 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=10.5
Q ss_pred cccchhcccccccccCCCC
Q 003170 740 TKRTDFRHVKSTFTSTPPN 758 (842)
Q Consensus 740 T~RTdld~Le~lFa~tp~~ 758 (842)
++..-|.-+...|+..+..
T Consensus 654 en~dlfakL~~~Fatq~k~ 672 (1102)
T KOG1924|consen 654 ENDDLFAKLALKFATQPKV 672 (1102)
T ss_pred cchHHHHHHHHHhhccccc
Confidence 3334455566667776543
No 96
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.43 E-value=0.00031 Score=74.34 Aligned_cols=74 Identities=18% Similarity=0.068 Sum_probs=63.6
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce--EEEEec
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW--RVKFMD 322 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~--RIrF~r 322 (842)
+.+.+-.|+|.||...|+++||+++|+.||.+..|.+. ++.|.|=|.|..-+||++|++.++|-.+- .|++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 56667889999999999999999999999999999985 37799999999999999999999995433 555554
Q ss_pred c
Q 003170 323 V 323 (842)
Q Consensus 323 ~ 323 (842)
+
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 3
No 97
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.40 E-value=0.00016 Score=75.75 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..+.+||||+...+|.++++..|+-||.|..|.+- .+||||||+|.+.+.++.|+. |+|..+-
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 35689999999999999999999999999877763 389999999999999999999 9998654
No 98
>smart00360 RRM RNA recognition motif.
Probab=97.37 E-value=0.00033 Score=54.80 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=46.0
Q ss_pred EccCCCchhHHHHHHHHhhccccCCceeeecCC----CceeeEEecChhhHHHHHHHhhhccc
Q 003170 344 VGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC----EGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 344 VG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~----r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|++++..++.++|.+-|..+|-...+.+..-.. +.+|||+|.+.++|..|+..+++...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 678999999999999999987554433332221 45899999999999999998886654
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.31 E-value=0.003 Score=72.14 Aligned_cols=136 Identities=20% Similarity=0.170 Sum_probs=97.9
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcceEEEec----CCceEEEEecChHHHHHHHHH---hcCCcceEE---------
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP----IKGFALVEYINIIDAIRAREY---IRNHFSWRV--------- 318 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~----~RGFAFVeF~~i~DA~~A~~~---L~G~~~~RI--------- 318 (842)
.-|=+-.|+=++|++||++.|+-++ |++|.+.+ ..|=|||+|++.+|++.|++. ..|++-..|
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 3455678999999999999999986 88888754 689999999999999999864 444432211
Q ss_pred EEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhcccc--CCceeeecCCCce--eeEEecChhhHHHHH
Q 003170 319 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYK--GPYMVTDLSCEGA--LLMEFRTPEEATTAM 394 (842)
Q Consensus 319 rF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~--g~~~~~dl~~r~~--afVEF~s~edAa~Am 394 (842)
..++.. |-++ ....-.|-+=++|=..++|||.+-|..+-.. |.....+...+.+ |||.|++.|.|-+|+
T Consensus 90 ~~~~~~-g~~s------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 90 WVMRPG-GPNS------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred ccccCC-CCCC------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 122221 1111 1345578889999999999999988776443 2224555556655 999999999999997
Q ss_pred HHhh
Q 003170 395 AHLR 398 (842)
Q Consensus 395 ~~lr 398 (842)
-..|
T Consensus 163 ~rhr 166 (510)
T KOG4211|consen 163 GRHR 166 (510)
T ss_pred HHHH
Confidence 6433
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.28 E-value=0.00043 Score=66.39 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=54.5
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCcee-e---ecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-T---DLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~---dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+.|||||++..+++|||.+.|.++|.+-.+.+ . .-.++++|||+|.+.++|..|+..+++...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~ 182 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL 182 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE
Confidence 599999999999999999999999988744222 2 236678999999999999999999997765
No 101
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.27 E-value=0.00044 Score=73.88 Aligned_cols=64 Identities=16% Similarity=0.023 Sum_probs=52.8
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeec-CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+.||||||+..+++++|.+.|..+|.+..+.+..- ..+.++||+|++.++|..|+. |+|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~ 68 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV 68 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC
Confidence 469999999999999999999999887766544321 246789999999999999995 8877763
No 102
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.00025 Score=78.32 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=78.0
Q ss_pred CCCCCCccccccccCCCCCCC---CCcccccccceeeeccCCccc---cccCCCCCeEEecCCCCccCHHHHHHhccccC
Q 003170 206 FPGRSSSEGASNALLSPNHHL---PVPYASTTSQIVWYFDEDPAA---MDIFSASKQLWLGSFGPEASEAHIRFQIDRFG 279 (842)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~~~v~~~~g~~~~---~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfG 279 (842)
||..|--|.|.-+++.||+-. -.+.+|.-+.+- -..|+. -...+.-+.+||.++-+|.+|+||...|+-||
T Consensus 159 FVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmp---QAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 159 FVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP---QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred EEEEeCcHHHHHHHHHhccccccCccccccCCCCCc---ccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 677777899999999999754 122233221110 000010 01134578999999999999999999999999
Q ss_pred CcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcc
Q 003170 280 PLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 280 pIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+|.....++ -|||+|+||.|..---+|+-.||=.-+
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL 277 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 277 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc
Confidence 999999875 689999999999888888888776543
No 103
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.24 E-value=0.0023 Score=72.31 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhcc-ccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce--------
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW-------- 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~-rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~-------- 316 (842)
.+..|.+||-||+.|+.=.||+++|. +-|.|+=|-.. ++||+|.|||++.+-+++|+|.|+-..+-
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34457799999999999999999995 67888877753 69999999999999999999999877543
Q ss_pred -----EEEEecccc----------CC------------------ccc---------------------------------
Q 003170 317 -----RVKFMDVGL----------GT------------------KGV--------------------------------- 330 (842)
Q Consensus 317 -----RIrF~r~~l----------Gs------------------rg~--------------------------------- 330 (842)
|-++++++- ++ ||+
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 112222210 00 000
Q ss_pred ------cccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeee---cCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 331 ------INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 331 ------~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
+.+.-..-+..++||+|-=.+..+-|-+-|..+|+..-+.|.. =-++..+-|||..+-+|.+|+.-|.++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 1111112367788999999888888877777777754332211 1345679999999999999999888654
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.18 E-value=0.00014 Score=76.01 Aligned_cols=64 Identities=17% Similarity=0.038 Sum_probs=57.7
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
...++|||||+...|+|+.|.|+|-.=||+..|.+-. .| ||||+|++..---=|++.|+|-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 3568999999999999999999999999999999843 44 9999999999999999999997654
No 105
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.13 E-value=0.002 Score=59.86 Aligned_cols=70 Identities=13% Similarity=0.249 Sum_probs=55.8
Q ss_pred CeEEecCCCCccCHHHHHHhcccc--CCcceEEE------ecCCceEEEEecChHHHHHHHHHhcCCc--------ceEE
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRF--GPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHF--------SWRV 318 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rf--GpIesV~~------~~~RGFAFVeF~~i~DA~~A~~~L~G~~--------~~RI 318 (842)
.+|=|.||++.-|.++|.+++... |..|=+.. ....|||||+|.+.++|.+-.+.++|+. +|.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 368899999999999999988765 33332222 2488999999999999999999999984 3477
Q ss_pred EEeccc
Q 003170 319 KFMDVG 324 (842)
Q Consensus 319 rF~r~~ 324 (842)
.||+++
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888876
No 106
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.10 E-value=0.00058 Score=74.58 Aligned_cols=54 Identities=17% Similarity=0.447 Sum_probs=47.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHH
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRA 306 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A 306 (842)
.++++|||.|+.+++|+||++.|++||.|.++.+. +.|||+||.|++.+....+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 68899999999999999999999999999888763 5999999999876555444
No 107
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.09 E-value=0.044 Score=65.76 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=55.0
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..|++||||+|+..+..++|.+-|..| |+ .+|+-+..|.+|||--..-.||-.|+..|+-+..
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feef---GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv 482 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEF---GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKV 482 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhc---ccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccc
Confidence 469999999999999888888888885 55 3788889999999999999999999999986665
No 108
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.90 E-value=0.0014 Score=62.47 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=55.0
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceee-ecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
-++.|||-|.|-..++||+.+-|-++|-+..+++- .--.+++|||-|+...||..|+.||.|+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 48999999999999999999988887777664432 224567799999999999999999999875
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.84 E-value=0.0011 Score=79.67 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=69.0
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce------EEEEecc
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFMDV 323 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~r~ 323 (842)
-.+++..||||.|++-..-.-|..+|.+||+|+.+.....-.||+|.|++.+-|..|++.|.|..++ |+.|+..
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 4578999999999999999999999999999999999999999999999999999999999999876 7777765
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.002 Score=74.19 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=110.5
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhcccc------------CCcceEEEecCCceEEEEecChHHHHHHHHH----hcCCc
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRF------------GPLEHFFFFPIKGFALVEYINIIDAIRAREY----IRNHF 314 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rf------------GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~----L~G~~ 314 (842)
--..+++|||++...++|+.....|..= =++.+|.+-..++|||++|..+++|.+|+-. .+|..
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~ 251 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRP 251 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCC
Confidence 3346889999999999999999988764 2377888888999999999999999999643 23455
Q ss_pred ceEEE-Ee---cc-------ccCCccccccccc--cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC---CC
Q 003170 315 SWRVK-FM---DV-------GLGTKGVINGVAV--GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS---CE 377 (842)
Q Consensus 315 ~~RIr-F~---r~-------~lGsrg~~~Gva~--~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~---~r 377 (842)
++-++ +. -+ ++|+.+..-+-.+ -..+.++||+++-...++|+.+-+..||.... .-+++.. ++
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred ceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 44111 00 00 0122221111111 24678999999999999999999999877766 3444443 46
Q ss_pred ceeeEEecChhhHHHHHHHhhhccc
Q 003170 378 GALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 378 ~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+||-||-.+-..-+|+++|+|...
T Consensus 332 g~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 332 GFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred ceeeeeeeCCcchhhhhcccchhhh
Confidence 6799999999999999999999885
No 111
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.78 E-value=0.0016 Score=75.27 Aligned_cols=67 Identities=9% Similarity=0.216 Sum_probs=60.2
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec------CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP------IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~------~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..+-+++|||..|+.-+...||..+|++||+|...+|+. .|-|+||..-.-.||-+.++.|+.+.+-
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence 355689999999999999999999999999999888752 6789999999999999999999988765
No 112
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.58 E-value=0.0033 Score=50.70 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHhhccccCCceeeecCCC-ceeeEEecChhhHHHHHHHhhhccc
Q 003170 356 ILHESYKVVYKGPYMVTDLSCE-GALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 356 i~~E~~k~g~~g~~~~~dl~~r-~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|.+.|.++|.+- .++..... +.|||+|.+.+||..|+.+|++...
T Consensus 1 L~~~f~~fG~V~--~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVK--KIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EE--EEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEE--EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456777766553 45556666 8899999999999999999998764
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.57 E-value=0.0021 Score=66.26 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=52.3
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC-CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC-EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~-r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
..+|.|||||+|..+-..||++-|.|+|.+-.|..|.-.- -.+|||||+.+-||--|+..-+|+--|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 4688999999999999999999999976665443333221 245999999999999999987766543
No 114
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.54 E-value=0.0037 Score=70.73 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=62.2
Q ss_pred cccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 246 AAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 246 ~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
-|.+.....|+++|.||+-+-|=..|++.|..||.+..+-+. +.+.-..|-|...+||+.|+..|+|.++-
T Consensus 528 ~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 528 NAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred ccccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCccc
Confidence 467888889999999999999999999999999999877763 34444499999999999999999999764
No 115
>PLN03121 nucleic acid binding protein; Provisional
Probab=96.40 E-value=0.0048 Score=65.57 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=51.6
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCcee-eecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+||||||+..++.++|.+.|..+|.+..+.+ .+=.....+||+|.+.++|-.|+ .|+|+.+
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l 68 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI 68 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee
Confidence 58999999999999999999999988877533 33223457999999999998886 7888886
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=96.39 E-value=0.0047 Score=52.53 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHhhccccCCce--eeec-----CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 354 DEILHESYKVVYKGPYM--VTDL-----SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 354 EEi~~E~~k~g~~g~~~--~~dl-----~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.+.+|+.++|.++.+. +++- .+++.+||+|.+.+||..|+.+|+|+..+
T Consensus 7 ~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 7 REFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred HHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34444444988887753 2222 24677999999999999999999997653
No 117
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.28 E-value=0.0089 Score=62.78 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=62.4
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEec-CCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP-IKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~-~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
+-..+..-|++=||+..++.+.|..+|+.|.-...|++.+ -++.|||+|.+...|..|+.+|+|..+-
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceec
Confidence 3467888999999999999999999999999999999877 7799999999999999999999998653
No 118
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.21 E-value=0.0018 Score=72.99 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=99.0
Q ss_pred CeEEecCCCCccCHHHHHHhccccCCcc-eEEEecCCceEEEEecChHHHHHHHHHhcCCcce---EEEEeccccCCccc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW---RVKFMDVGLGTKGV 330 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGpIe-sV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~---RIrF~r~~lGsrg~ 330 (842)
+.||+|||++.++-+||+..|+-- +|- +=-|.---|||||++-+-.-|.+|++.+.|+.-. |++.......
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k---- 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK---- 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH----
Confidence 579999999999999999999754 111 1112223499999999999999999999998433 5554433200
Q ss_pred cccccccccceEEEccCCCchhHHHHHHHHh-hccccCCceeeecCCCce-eeEEecChhhHHHHHHHhhhcccC
Q 003170 331 INGVAVGSCFHVYVGNIPNQWAKDEILHESY-KVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 331 ~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~-k~g~~g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~R~e 403 (842)
-+-||.+-|-+|++++.- |++|-+. .+|....|+.+--.++.+ .-|.|.+-+.+..||.+++|.-.+
T Consensus 77 -----kqrsrk~Qirnippql~w-evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 77 -----KQRSRKIQIRNIPPQLQW-EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred -----HHHhhhhhHhcCCHHHHH-HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 145778999999998643 5555554 444445566666566666 567788889999999999887653
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.12 E-value=0.00066 Score=81.06 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=101.7
Q ss_pred ccccccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcceEE
Q 003170 245 PAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRV 318 (842)
Q Consensus 245 ~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RI 318 (842)
.+..+...-.++.||-||++...+.||.+.|..||-++.|.+. +-||+|||+|.+.++|.+|+.-.+++...
T Consensus 658 kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-- 735 (881)
T KOG0128|consen 658 KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-- 735 (881)
T ss_pred CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh--
Confidence 3455555566789999999999999999999999999998874 58999999999999999999999888522
Q ss_pred EEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCC---CceeeEEecChhhHHHHHH
Q 003170 319 KFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 319 rF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~ 395 (842)
.-.|.|-|.+-+-+|||+..-+.+.|..=..+.+.... .+-|||+|.+.-+|.++..
T Consensus 736 --------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~ 795 (881)
T KOG0128|consen 736 --------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVA 795 (881)
T ss_pred --------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcc
Confidence 23577778888888998888777765432222222222 3448999999999888655
Q ss_pred Hhh
Q 003170 396 HLR 398 (842)
Q Consensus 396 ~lr 398 (842)
.+.
T Consensus 796 s~d 798 (881)
T KOG0128|consen 796 SVD 798 (881)
T ss_pred cch
Confidence 443
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.07 E-value=0.0096 Score=65.93 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCCCCeEEecCCCCc----c-------CHHHHHHhccccCCcceEEEe--cCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 251 FSASKQLWLGSFGPE----A-------SEAHIRFQIDRFGPLEHFFFF--PIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~d----v-------tE~dL~~~F~rfGpIesV~~~--~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
....+.|-+-|+=.- . -++||++..++||++++|.++ .+.|-|-|.|.|.++|..+++.|+|.+
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 345678888887432 1 267888999999999999998 699999999999999999999999986
No 121
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.72 E-value=0.0065 Score=63.68 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=54.1
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..+.|.|-+++..+...||.+.|.+||.+..+.. -+++|||+|...+||..|++.|+|..+.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~ 159 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLN 159 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhc
Confidence 3466788889999999999999999999955444 7899999999999999999999998653
No 122
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.60 E-value=2.7 Score=49.28 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=57.1
Q ss_pred cCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce-------EEEEeccccCCccccccccccc
Q 003170 266 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW-------RVKFMDVGLGTKGVINGVAVGS 338 (842)
Q Consensus 266 vtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~-------RIrF~r~~lGsrg~~~Gva~~~ 338 (842)
.|.+|=+.+|..-|+ +++.+.-.=-=-|+.|.+. +.=-++.+.|. +| |-.|+|.. ....
T Consensus 21 Lt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~--~~W~~~~~~Ga-l~lVkD~~~rsyFlrl~----------di~~ 86 (569)
T KOG3671|consen 21 LTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDP--NHWNKTGLCGA-LCLVKDNAQRSYFLRLV----------DIVN 86 (569)
T ss_pred cchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCCh--hhhccccCcee-EEEeeccccceeeeEEe----------eecC
Confidence 567777888888888 7776521000002333332 12223344443 22 55677653 2456
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeecC-CCceeeEEecChhhHHHHHHHhh
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~-~r~~afVEF~s~edAa~Am~~lr 398 (842)
++.|| +.||-.+|.-. .-..-|-.|- ++..+=+.|.+-+||..=.+++.
T Consensus 87 ~rliW---------dqELY~nf~y~--q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 87 NRLIW---------DQELYQNFEYR--QPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQ 136 (569)
T ss_pred ceeee---------hHHhhhhceec--cCccceeeeccccceeeecccCHHHHHHHHHHHH
Confidence 67787 34444444322 1111222222 33347789999999998777665
No 123
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.011 Score=68.76 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=46.0
Q ss_pred CccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 264 PEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 264 ~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.+.-+.-|..+|++||+|.++.+- ..+||+|++|.+.++|+.|++.|+|+.+-
T Consensus 74 l~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 74 LEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred HHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 344566788899999999999973 37899999999999999999999999765
No 124
>PLN03213 repressor of silencing 3; Provisional
Probab=95.55 E-value=0.021 Score=65.68 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=75.8
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecCh--hhHHHHHHHhhhcccC---------CCC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTP--EEATTAMAHLRQHRKS---------RSN 406 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~--edAa~Am~~lrg~R~e---------rSs 406 (842)
..-.|||||++-.++.|+|..-|..||..-...|+.-..|.+|||||.+. +++..|+..|+|..-. +.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 34689999999999999999999999988776666666799999999998 5788899999887631 555
Q ss_pred CCCCCC--------CCCCCcccccCCCCCCCCCcEEEecc-CcccccccccCCC
Q 003170 407 YLPPNT--------GPANAAMSQIDGARSVPAAPIHVDIR-SNRLGNISAGGFG 451 (842)
Q Consensus 407 f~~r~s--------s~~~~Pmr~eD~~~svPSnVLwig~p-~~~~~n~a~~~fG 451 (842)
|+.|.. ...+. .+-.+...+..-|-|=|| +..+.-+-|...|
T Consensus 89 YLeRLkrEReea~s~~~~~---~kl~k~~~e~~qLnifFPrLrKvKslPfsGTG 139 (759)
T PLN03213 89 YLARLKREWEAASSTSDNT---IKAPSDSPPATHLNIFFPRLRKVKAMPLSGTG 139 (759)
T ss_pred HHHHHHHHHHHhhcccccc---ccccccCCccceeeEeccccccccccccCCCc
Confidence 554411 00111 111222356667778888 3444444444444
No 125
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.43 E-value=0.031 Score=52.28 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=40.5
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCC
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
-|.|-++..+++.++|.+.|..||+|.=|-+.++-.-|||-|.+.++|..|++.+.-.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 4677779999999999999999999999999999999999999999999999988654
No 126
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.38 E-value=0.019 Score=65.51 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=51.9
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCceee-ec---CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT-DL---SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~-dl---~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
+.||||+|+-.+++|+|...|+.+|.+=.++++ |- ..++++|+||.+.++|..|++.|+|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~ 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc
Confidence 899999999999999999999998765442211 11 2356799999999999999999998775
No 127
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.34 E-value=0.027 Score=46.76 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=39.9
Q ss_pred EEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHH
Q 003170 257 LWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAR 307 (842)
Q Consensus 257 LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~ 307 (842)
|=|-...++-. +++...|..||.|.+..+...+.+++|.|.+..||++|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 33444444444 455668999999999999888999999999999999995
No 128
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=95.09 E-value=0.031 Score=59.81 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceee----ecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~----dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.+++|-|-|++-....++|++=|++||.+-.+.+. .=.++++|||.|.+-|||++|+..|+|++.+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 67889999999999999998888887665432221 1246788999999999999999999999865
No 129
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.01 E-value=0.017 Score=65.53 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=60.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecC-------------------CceEEEEecChHHHHHHHHHhcC
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPI-------------------KGFALVEYINIIDAIRAREYIRN 312 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~-------------------RGFAFVeF~~i~DA~~A~~~L~G 312 (842)
=+++.|-+=||+.|-.-+.|+.+|+.+|.|.+|+|-.+ +=+|||+|+..+-|++|.+-|+-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47999999999999999999999999999999999654 56799999999999999999988
Q ss_pred CcceE
Q 003170 313 HFSWR 317 (842)
Q Consensus 313 ~~~~R 317 (842)
..-||
T Consensus 309 e~~wr 313 (484)
T KOG1855|consen 309 EQNWR 313 (484)
T ss_pred hhhhh
Confidence 77774
No 130
>PHA03247 large tegument protein UL36; Provisional
Probab=94.93 E-value=0.59 Score=62.59 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=13.4
Q ss_pred ccccccccccCcceeeEEEe
Q 003170 695 YQWQGALCKSGVHYCTIYAQ 714 (842)
Q Consensus 695 ~~WqG~laKsG~~~C~~~~~ 714 (842)
--|-|.++.|-+.+=+.+..
T Consensus 2961 ~~~~~~~~~~~~~~pR~~~p 2980 (3151)
T PHA03247 2961 QPWLGALVPGRVAVPRFRVP 2980 (3151)
T ss_pred CccccccCcccccCcccCCC
Confidence 45678888887777665433
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.90 E-value=0.029 Score=60.32 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=117.8
Q ss_pred CCccccccCCCCCeEEecCCCCccCHHH-H--HHhccccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCc
Q 003170 243 EDPAAMDIFSASKQLWLGSFGPEASEAH-I--RFQIDRFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 243 g~~~~~~v~s~Sr~LwVGnL~~dvtE~d-L--~~~F~rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
-+|++.-.+.+.-.++++++++.|..+- | ...|+.|-.|..-.+++ -+++||+.|....--..|-..-.++.
T Consensus 85 ~~Pt~l~~~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kk 164 (290)
T KOG0226|consen 85 ADPTLLAPAPAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKK 164 (290)
T ss_pred CCCccCCCCcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccc
Confidence 5677777788889999999999988776 4 78899999988777654 67999999987666666655566665
Q ss_pred ce--EEEEeccccCCccc-cccccc--cccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC---CCceeeEEec
Q 003170 315 SW--RVKFMDVGLGTKGV-INGVAV--GSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS---CEGALLMEFR 385 (842)
Q Consensus 315 ~~--RIrF~r~~lGsrg~-~~Gva~--~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~---~r~~afVEF~ 385 (842)
+. .||-++ |+--- .+ .+. ..--.|++|-.++.+.+|=+-.-|+||--|.. --++|-+ +..+-||-|.
T Consensus 165 i~~~~VR~a~---gtswedPs-l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 165 IGKPPVRLAA---GTSWEDPS-LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccCcceeecc---ccccCCcc-cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 54 244221 11000 00 000 23567999999999999999999999866644 3444443 3456899999
Q ss_pred ChhhHHHHHHHhhhcccC-------CCCCCCC
Q 003170 386 TPEEATTAMAHLRQHRKS-------RSNYLPP 410 (842)
Q Consensus 386 s~edAa~Am~~lrg~R~e-------rSsf~~r 410 (842)
+++|+++||+-|+|+-.. +|.|-+|
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS~wkeR 272 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKSEWKER 272 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhhhHHhh
Confidence 999999999999998753 6667654
No 132
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=94.87 E-value=0.046 Score=59.87 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=58.4
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc-eeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
-+-|+|+||.++=.++..+|..||.++|-|..+ +|++. .++.+|||||+..-|-..|-++..|..|+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 578999999999999999999999999888774 55553 35678999999999999999999998885
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=94.70 E-value=0.055 Score=56.63 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=51.6
Q ss_pred ccceEEEccCCCchhHHHHHHHHhhccccCCceeeec-------CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 338 SCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL-------SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 338 ~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl-------~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
....+||+.|+...-.-||+.=|+.++ |......+ -++++|||||++.|.|-.|-+.||.|-.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~--g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFG--GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcC--CeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 455899999999998888888888874 55333333 4678899999999999999999998874
No 134
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=94.65 E-value=0.043 Score=54.66 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=52.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc----eeeecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY----MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~----~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
..--+|+|-+|+...+.|+|.+-|--||.+-.+ .-+.=+-+.+|+|||+|+++|..||..+||.-.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l 139 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL 139 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh
Confidence 345689999999999999999999888765332 112224578899999999999999999997764
No 135
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.027 Score=59.57 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=42.3
Q ss_pred cccceEEEccCCCchhHHHHHHH-HhhccccCCceee----ec---CCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHE-SYKVVYKGPYMVT----DL---SCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E-~~k~g~~g~~~~~----dl---~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
..-|+||||+.-..++ |-|||. |.- ||++.-+ |+ .-|.++||||+-.|||+.||.+|++--
T Consensus 8 ~~KrtlYVGGladeVt-ekvLhaAFIP---FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVT-EKVLHAAFIP---FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESE 76 (298)
T ss_pred ccceeEEeccchHHHH-HHHHHhcccc---ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhh
Confidence 3468999999987774 444444 333 4653221 12 235679999999999999999998643
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.02 E-value=0.27 Score=55.67 Aligned_cols=144 Identities=18% Similarity=0.102 Sum_probs=95.7
Q ss_pred EecCCCCccCHHHHHHhccccCC----cceEEEe-----cCCceEEEEecChHHHHHHHHHhc---CCcce---E-----
Q 003170 258 WLGSFGPEASEAHIRFQIDRFGP----LEHFFFF-----PIKGFALVEYINIIDAIRAREYIR---NHFSW---R----- 317 (842)
Q Consensus 258 wVGnL~~dvtE~dL~~~F~rfGp----IesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~---G~~~~---R----- 317 (842)
-+..|+-|+|+.|+.+.|..--+ .+.|.|. ++-|=|||.|...+||-.|++.=. |++-. |
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaE 244 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAE 244 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Confidence 35789999999999999975433 3456654 366999999999999999986543 33211 0
Q ss_pred -----EEEeccccCC---ccccccccc------cccceEEEccCCCchhHHHHHHHHhhcccc----CCceeeecCCCce
Q 003170 318 -----VKFMDVGLGT---KGVINGVAV------GSCFHVYVGNIPNQWAKDEILHESYKVVYK----GPYMVTDLSCEGA 379 (842)
Q Consensus 318 -----IrF~r~~lGs---rg~~~Gva~------~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~----g~~~~~dl~~r~~ 379 (842)
-|+....|+. -+.+.|+.. .....|-.-|.+=..++|+|++-|.-|-.. |-.|+.--..+-.
T Consensus 245 vqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPS 324 (508)
T KOG1365|consen 245 VQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPS 324 (508)
T ss_pred HHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcC
Confidence 0333322221 111111211 235568888999999999999988776442 4445544444444
Q ss_pred --eeEEecChhhHHHHHHHhhhcc
Q 003170 380 --LLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 380 --afVEF~s~edAa~Am~~lrg~R 401 (842)
|||+|.+.|+|..|+..-|.+.
T Consensus 325 GeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 325 GEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhh
Confidence 9999999999999987655443
No 137
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.76 E-value=0.045 Score=64.16 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCCeEEecCCCCccCHHHHHHhcc-ccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCC
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~-rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
+|+-|+|-||-.--|...|+++++ ..|-|+++||.+-|+-+||.|-..+||++-+++|+|-
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhcc
Confidence 478899999999999999999999 5677789999999999999999999999999999995
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.39 E-value=0.086 Score=57.21 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=102.1
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEE------ecCCceEEEEecChHHHHHHHHHhcCCcce-EEEEeccc
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFF------FPIKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDVG 324 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~------~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~-RIrF~r~~ 324 (842)
...+.+|+|++.-++.+.++...|.++|......+ .+.+||..|.|...+.+..|+.......+. +.-+.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45678999999999999999999999996665543 359999999999999999999888875443 11111111
Q ss_pred ----cCCccccccccccccceEE-EccCCCchhHHHHHHHHhhccccCCceeee----cCCCceeeEEecChhhHHHHHH
Q 003170 325 ----LGTKGVINGVAVGSCFHVY-VGNIPNQWAKDEILHESYKVVYKGPYMVTD----LSCEGALLMEFRTPEEATTAMA 395 (842)
Q Consensus 325 ----lGsrg~~~Gva~~~s~~Lw-VG~Iss~~~kEEi~~E~~k~g~~g~~~~~d----l~~r~~afVEF~s~edAa~Am~ 395 (842)
+-.+....+.....+..+| ||+.+...++++|-.++-..|.+-..++.. ..++..+||+|....++..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 0011111122235666777 999999999999997776665553322222 2334558999999999998877
Q ss_pred H
Q 003170 396 H 396 (842)
Q Consensus 396 ~ 396 (842)
.
T Consensus 246 ~ 246 (285)
T KOG4210|consen 246 D 246 (285)
T ss_pred c
Confidence 5
No 139
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=93.04 E-value=0.31 Score=58.87 Aligned_cols=42 Identities=38% Similarity=0.675 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q 003170 634 PPHLSSLPPQPAELPPLPPSPPPLP--QSQPPLVPPPPNSPPPP 675 (842)
Q Consensus 634 pPpl~s~pPppp~~pp~pp~ppp~p--~~~PPl~pPpP~sppp~ 675 (842)
|||++..|||||++||.|+.+-++- ..+||.+||+.+.++++
T Consensus 300 p~~~~~~pPppp~~ppv~~ln~~~s~~~p~pp~~p~l~~~~esp 343 (830)
T KOG1923|consen 300 PLRLRCSPPPPPPFPPVGPLNSNLSSGAPQPPGVPFLLTFPESP 343 (830)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccCCCCCC
Confidence 3444444444444333344333333 33345556666655444
No 140
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.75 E-value=0.14 Score=57.24 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc-eeeecCCCceeeEEecChhhHHHHHH------Hhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCEGALLMEFRTPEEATTAMA------HLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~dl~~r~~afVEF~s~edAa~Am~------~lrg~R~ 402 (842)
+...+||||+.-+.+..-+|.+.|-++ |++ .++.+.-+.+|||+|-|-+.|-.|++ .++|+|+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqy---Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQY---GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhc---CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 678999999999999999999999995 563 56667777889999999999988887 3466664
No 141
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.73 E-value=0.13 Score=58.14 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=93.1
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcceEEEec---------CCceEEEEecChHHHHHHHHHhcCCcceEEEEecccc-
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFP---------IKGFALVEYINIIDAIRAREYIRNHFSWRVKFMDVGL- 325 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~---------~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~l- 325 (842)
-|-|.||++.+|.+.+.-+|+..|+|+.+.+++ ..-.|||-|.|..-+.-|-+.-+-.++.+.-|-.+++
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 567999999999999999999999999999987 3468999999999998886655555554443322211
Q ss_pred --------------CCc--c--ccccccc-------------------------------cccceEEEccCCCchhHHHH
Q 003170 326 --------------GTK--G--VINGVAV-------------------------------GSCFHVYVGNIPNQWAKDEI 356 (842)
Q Consensus 326 --------------Gsr--g--~~~Gva~-------------------------------~~s~~LwVG~Iss~~~kEEi 356 (842)
++- | ..+||-- ...+++||+++.+.|...|+
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 000 0 0111100 12688999999999999998
Q ss_pred HHHHhhccccCCceeeecCC---CceeeEEecChhhHHHHHHHh
Q 003170 357 LHESYKVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 357 ~~E~~k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~~l 397 (842)
++-|.+. |+.++....+ ..++-++|..-....+|....
T Consensus 169 ~e~f~r~---Gev~ya~~ask~~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 169 GESFERK---GEVSYAHTASKSRSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhc---chhhhhhhhccCCCcchhhhHhhhhhHHHHHHhc
Confidence 8888875 4432222221 223457887766666654433
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.23 E-value=0.078 Score=57.50 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=59.3
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcce----EEEEe
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW----RVKFM 321 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~----RIrF~ 321 (842)
....-+.||+|.-+++++||...|..+|.|.++++- ..+|||||.|.+..++..|+.. ++..+. +|++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 333444499999999999999999999999999974 3889999999999999999998 766554 57766
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
+.
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 143
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.20 E-value=0.078 Score=57.10 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=55.6
Q ss_pred CCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCce------------------EEEEecChHHHHHHHHHhcCCc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGF------------------ALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGF------------------AFVeF~~i~DA~~A~~~L~G~~ 314 (842)
.+.-+|+++|++...-..|+++|+.||.|-.|++.+..-+ +.|||.+-++|+.-.+.|||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4566899999999999999999999999999999752222 5799999999999999999997
Q ss_pred ce
Q 003170 315 SW 316 (842)
Q Consensus 315 ~~ 316 (842)
|+
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 53
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.06 E-value=0.22 Score=50.17 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 261 SFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 261 nL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
|+.+.-+-..+-...+.||||++|+. .+|--|.|.|+|+.-|-+|+.+.+-..+.
T Consensus 97 nm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 97 NMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred cCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 45444444556677899999999986 78899999999999999999999887543
No 145
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.85 E-value=1.9 Score=50.46 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=37.8
Q ss_pred cCHHHHHHhccccCCcceEEEe-cCCceEEEEecChHHHHHHHHHhcCC
Q 003170 266 ASEAHIRFQIDRFGPLEHFFFF-PIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 266 vtE~dL~~~F~rfGpIesV~~~-~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
+=|.||-..|+++-+=.-|-.| -+.++|=.+|-+++||.+=++.++-+
T Consensus 90 iWdqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 90 IWDQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred eehHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHHH
Confidence 3378898999998865444433 48899999999999999988888765
No 146
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.74 E-value=0.24 Score=54.49 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=41.6
Q ss_pred CHHHHHHhccccCCcceEEEecCCce-------EEEEecChHHHHHHHHHhcCCcc
Q 003170 267 SEAHIRFQIDRFGPLEHFFFFPIKGF-------ALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 267 tE~dL~~~F~rfGpIesV~~~~~RGF-------AFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
-|+++.++.++||.+.+|.|+-..++ -||+|++.+.|++|+-.|||...
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF 354 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF 354 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee
Confidence 45677889999999999998754433 59999999999999999999853
No 147
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.71 E-value=0.11 Score=62.93 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=68.3
Q ss_pred cccCCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce------EEEEe
Q 003170 248 MDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW------RVKFM 321 (842)
Q Consensus 248 ~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~------RIrF~ 321 (842)
.+|+..--+.++-|..-+.+-.-|..+|..||.+-+.|..++-.-|.|+|...+-|+-|.++|+|+.+- ||-|+
T Consensus 292 snv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 292 SNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 467777777888888888999999999999999999999999999999999999999999999999765 88777
Q ss_pred cc
Q 003170 322 DV 323 (842)
Q Consensus 322 r~ 323 (842)
++
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 54
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=91.14 E-value=0.28 Score=58.80 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=52.8
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecC---------CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLS---------CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~---------~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.....+||||||+++++.+.++..| |-||| +.++..+ .+++.||-|.+-.||-+||+.|+|+-+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tf---GrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTF---GRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHh---cccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 3567899999999999999987655 55677 3555554 568999999999999999999999876
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=91.13 E-value=0.41 Score=44.87 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCce-eeEEecChhhHHHHHHHhhhc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGA-LLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~-afVEF~s~edAa~Am~~lrg~ 400 (842)
+.|.|-++...+++|+|-+.|..++ .+.++|+..... +||.|.+.++|..|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g---~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG---EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS-----EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC---CcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 4788888999999999999999864 888888776554 999999999999998877654
No 150
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=90.89 E-value=0.096 Score=56.32 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=39.8
Q ss_pred HHHHHhcc-ccCCcceEEEec-----CCceEEEEecChHHHHHHHHHhcCCc
Q 003170 269 AHIRFQID-RFGPLEHFFFFP-----IKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 269 ~dL~~~F~-rfGpIesV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
+|+-.+|+ +||.|+++.|-. -+|=++|.|+..+||++|++.|+|.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc
Confidence 45666666 999999998754 56889999999999999999999986
No 151
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=90.53 E-value=0.96 Score=55.10 Aligned_cols=99 Identities=7% Similarity=-0.002 Sum_probs=55.6
Q ss_pred CCCCCCCCCccccccccchh---cccccccccCCCCCccee--EecCCCCCCCchHHHHHHHHhhcCccceeeccc----
Q 003170 726 DISEPAEWPAKLDMTKRTDF---RHVKSTFTSTPPNKREVC--RLVPSSPGDHKGFQDFVSYLKQRECAGVIKIPA---- 796 (842)
Q Consensus 726 ~~~ep~~WP~~lD~T~RTdl---d~Le~lFa~tp~~~r~v~--~l~P~S~~d~~~~qdFI~yLkqk~rAgVik~~~---- 796 (842)
.......|....+-+.-++. +.+++.|+...-...... .-.............+++..+.+|.+++++...
T Consensus 407 ~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r~~~n~~ill~sl~~~~~ 486 (833)
T KOG1922|consen 407 SSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPRRPQNIAILLSSLNMPTE 486 (833)
T ss_pred CCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCCCccceeeehhhcCCchH
Confidence 44455678888888888887 888888877632111111 000000000111233344444444444433221
Q ss_pred -------------hh-hhHhhhhhccCCchhhhcccccCCCC
Q 003170 797 -------------VK-SIWARLMFILPYSQDICSMLSIAPNS 824 (842)
Q Consensus 797 -------------~~-~~~~rlL~llP~s~e~~~~L~v~~d~ 824 (842)
+. ++|+.++++.|+.+|........++.
T Consensus 487 ~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~ 528 (833)
T KOG1922|consen 487 DIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDP 528 (833)
T ss_pred HHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCC
Confidence 11 57899999999999999888876543
No 152
>PHA03247 large tegument protein UL36; Provisional
Probab=90.47 E-value=4.9 Score=54.68 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=14.9
Q ss_pred EEEccCCCchhHHHHHHHHhhccccCC
Q 003170 342 VYVGNIPNQWAKDEILHESYKVVYKGP 368 (842)
Q Consensus 342 LwVG~Iss~~~kEEi~~E~~k~g~~g~ 368 (842)
+.+|.+++.+.+=--|+-..-..++|-
T Consensus 2285 tV~~~pps~v~~VtAmDia~~A~L~GA 2311 (3151)
T PHA03247 2285 LVRGGAPDPAARVTVMDLVLAATLLGA 2311 (3151)
T ss_pred EeccCCCCccccchHHHHHHHHHHhCC
Confidence 445556665555555555555555554
No 153
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=90.01 E-value=0.41 Score=54.80 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=44.7
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCC--ceeeecCCC--ceeeEEecChhhHHHHHH
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGP--YMVTDLSCE--GALLMEFRTPEEATTAMA 395 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~--~~~~dl~~r--~~afVEF~s~edAa~Am~ 395 (842)
.+|||++++..++.++|.++|++||-+-. |.++..... .++||+|++.+++-+|+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~ 348 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE 348 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh
Confidence 34999999999999999999999998744 555442233 569999999998877755
No 154
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.78 E-value=0.63 Score=47.92 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=44.4
Q ss_pred cCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhc--CCcce----EEEEecc
Q 003170 266 ASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIR--NHFSW----RVKFMDV 323 (842)
Q Consensus 266 vtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~--G~~~~----RIrF~r~ 323 (842)
...+.|+++|..|+++.++...++=+=..|.|.+.++|++|+..|+ |..+. |+.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4568999999999999999999988889999999999999999999 66543 7777754
No 155
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.34 E-value=0.66 Score=54.42 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=55.9
Q ss_pred ccccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 336 VGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 336 ~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+...++|||=+++..++-++|+.-|-.+|=+.++.-+ ...++..||||.++-+|.+|.+.||++++.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-PNKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-cccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 3568899999999999999999999888776553332 256778999999999999999999988863
No 156
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=88.33 E-value=0.41 Score=51.80 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=51.3
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHh
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYI 310 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L 310 (842)
+.....|||-||...|+.+.|+..|.+||+|+.-.+. +.-+=.+|+|.+.-.|.+|.+..
T Consensus 28 fa~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 28 FAMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eeccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 3444889999999999999999999999999976553 24466799999999999999887
No 157
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=88.05 E-value=10 Score=44.03 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=14.0
Q ss_pred cCCCCCCCCCCccccccCCC
Q 003170 601 VAAPFIPPSVTPLAQIQGAP 620 (842)
Q Consensus 601 v~~PfiP~S~tPl~q~~g~~ 620 (842)
|.-|.-|+...||...+|+.
T Consensus 299 ~~rPt~pPP~ppl~~~~g~~ 318 (518)
T KOG1830|consen 299 VVRPTQPPPPPPLDSPPGPD 318 (518)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 45577777777777777766
No 158
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.94 E-value=2 Score=51.93 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=60.1
Q ss_pred CCCC-eEEecCCCCccCHHHHHHhccccCCcc-eEEEec-----CCceEEEEecChHHHHHHHHHhcCCcce-EEEEecc
Q 003170 252 SASK-QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFP-----IKGFALVEYINIIDAIRAREYIRNHFSW-RVKFMDV 323 (842)
Q Consensus 252 s~Sr-~LwVGnL~~dvtE~dL~~~F~rfGpIe-sV~~~~-----~RGFAFVeF~~i~DA~~A~~~L~G~~~~-RIrF~r~ 323 (842)
++.+ -|=+-|++-+|+-+||.+.|.-|-.+- +|.+.. +-|=|-|.|++.++|.+|...|+|+.|. |+-++++
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 788999999999999999999999987 555543 6689999999999999999999999876 5554443
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.81 E-value=1.6 Score=47.39 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCcce----EEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCC-ceeeecCC
Q 003170 302 DAIRAREYIRNHFSW----RVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-YMVTDLSC 376 (842)
Q Consensus 302 DA~~A~~~L~G~~~~----RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~~~~dl~~ 376 (842)
-|+.|..+|+|..+. ||+|+-- ..|||=|.++.+..|.++.+|++||=+.. ..+.|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~ 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc
Confidence 488999999999765 8888753 38999999999999999999999876655 46777666
Q ss_pred Cce--eeEEecChhhHHHHHHHh
Q 003170 377 EGA--LLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 377 r~~--afVEF~s~edAa~Am~~l 397 (842)
+.. -+|+|.+--.|..|..-.
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cccccchhhhhcchhHHHHHHHh
Confidence 666 789999888888886544
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=85.80 E-value=1.4 Score=51.54 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred ccCCCCCeEEecCCCCccCHHHHHHhcc-ccCCcceEEEe------cCCceEEEEecChHHHHHHHHHhcCCcceEEEEe
Q 003170 249 DIFSASKQLWLGSFGPEASEAHIRFQID-RFGPLEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHFSWRVKFM 321 (842)
Q Consensus 249 ~v~s~Sr~LwVGnL~~dvtE~dL~~~F~-rfGpIesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIrF~ 321 (842)
...-+.+++|||.|.--++..||...|+ -||-+.-|-|. -+||-|=|.|.|-.-=++|+.+= ..+|+=.
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar----Fvql~h~ 440 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR----FVQLDHT 440 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh----eEEEecc
Confidence 3556799999999999999999999999 89999988873 28999999999999888888751 1111111
Q ss_pred ccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhc---cccCC
Q 003170 322 DVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKV---VYKGP 368 (842)
Q Consensus 322 r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~---g~~g~ 368 (842)
++ .+.| -|.+.+-+|++++|+... |.++|
T Consensus 441 d~---------------~KRV---EIkPYv~eDq~CdeC~g~~c~~q~aP 472 (520)
T KOG0129|consen 441 DI---------------DKRV---EIKPYVMEDQLCDECGGRRCGGQFAP 472 (520)
T ss_pred cc---------------ceee---eecceeccccchhhhcCeeccCccCC
Confidence 11 1111 256677789999999884 35566
No 161
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=85.26 E-value=2 Score=40.26 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=50.2
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCcee-------eecCCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-------TDLSCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-------~dl~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+|-|=|||+..+.++|++++... .+|...| +.-...++|||+|.++++|..-....+|++-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~-~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEH-FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHh-ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 367888999999999999999875 5665443 3334567799999999999999999998884
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.14 E-value=0.87 Score=51.06 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=55.9
Q ss_pred cccccccccceEEEccCCCchhHHHHHHHHhhccccCCc-eeee-cCC----------Cce-eeEEecChhhHHHHHHHh
Q 003170 331 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD-LSC----------EGA-LLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 331 ~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~d-l~~----------r~~-afVEF~s~edAa~Am~~l 397 (842)
+.|+-+..-+-+||-+|++.+..||...-+++--|||.. .|+. +-. +|+ .||.|.+-|||++++..+
T Consensus 106 lsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~v 185 (480)
T COG5175 106 LSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEV 185 (480)
T ss_pred cccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHh
Confidence 334445566789999999999999977777766666552 1211 111 222 499999999999999998
Q ss_pred hhcccC----CCCCCC
Q 003170 398 RQHRKS----RSNYLP 409 (842)
Q Consensus 398 rg~R~e----rSsf~~ 409 (842)
.|.-.| ++.|+.
T Consensus 186 Dgs~~DGr~lkatYGT 201 (480)
T COG5175 186 DGSLLDGRVLKATYGT 201 (480)
T ss_pred ccccccCceEeeecCc
Confidence 887765 666653
No 163
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=84.28 E-value=1.8 Score=44.09 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=45.5
Q ss_pred CCCeEEecCCCCccCHHHHHHhccc-cCCc---ceEEEe--------cCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 253 ASKQLWLGSFGPEASEAHIRFQIDR-FGPL---EHFFFF--------PIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 253 ~Sr~LwVGnL~~dvtE~dL~~~F~r-fGpI---esV~~~--------~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
...+|-|.+|+++.||+++++.+.. +|.- ..|... .--+-|||.|.+.+|+.+=++.++|+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 4568999999999999999999987 7776 233311 134779999999999999999999975
No 164
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.06 E-value=21 Score=43.75 Aligned_cols=48 Identities=23% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcccc-CCceeeecCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 353 KDEILHESYKVVYK-GPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 353 kEEi~~E~~k~g~~-g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
.-+|.|-|..+..- |..-|+- -...-|||-|.|-|||+.||.--|++-
T Consensus 16 a~DIR~FFSGL~IPdGgVHIIG-Ge~GeaFI~FsTDeDARlaM~kdr~~i 64 (944)
T KOG4307|consen 16 ASDIRTFFSGLKIPDGGVHIIG-GEEGEAFIGFSTDEDARLAMTKDRLMI 64 (944)
T ss_pred chHHHHhhcccccCCCceEEec-ccccceEEEecccchhhhhhhhcccce
Confidence 34666666654221 2222211 234559999999999999997655544
No 165
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=82.99 E-value=1.8 Score=46.02 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=56.1
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceee----ecCCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT----DLSCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~----dl~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
-..|-|-||.-.++-|+|..-|.|+|.+|+..|. .=.++.+|||.|-.-.||-.||+.|.|.-.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 3478999999999999999999999999985442 2357888999999999999999999988865
No 166
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=82.66 E-value=3 Score=38.99 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=41.0
Q ss_pred CeEEecCCCCccCH----HHHHHhccccC-CcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 255 KQLWLGSFGPEASE----AHIRFQIDRFG-PLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 255 r~LwVGnL~~dvtE----~dL~~~F~rfG-pIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
..|+|-||+.+..- .-|+.+++-+| ++-+| ..|.|.|-|.+.+.|.+|.+.|+|.-+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVf 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVF 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccc
Confidence 36999999998765 45778888886 44444 3699999999999999999999998665
No 167
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=82.31 E-value=3.1 Score=50.77 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=7.7
Q ss_pred HhhhhhccCCchhhh
Q 003170 801 WARLMFILPYSQDIC 815 (842)
Q Consensus 801 ~~rlL~llP~s~e~~ 815 (842)
.+-++.++|+.+|+-
T Consensus 478 ve~L~r~lPTe~E~k 492 (830)
T KOG1923|consen 478 VELLQRILPTEAEVK 492 (830)
T ss_pred HHHHHhcCCchHHHH
Confidence 444555555555543
No 168
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=81.62 E-value=1.9 Score=48.28 Aligned_cols=95 Identities=15% Similarity=0.093 Sum_probs=65.5
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCc--eeeecCCCceeeEEecChhhHHHHHHHhhhcccCCCCCCCCC-CCCC
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKSRSNYLPPN-TGPA 415 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~--~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~erSsf~~r~-ss~~ 415 (842)
-+.|+|-||+=.--+-+|..=|-|||++=+. -|-+=-++++-||.|++.+||-+|-+-|+|.-+|+-..--.+ +.+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar- 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR- 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh-
Confidence 5789999999998888999989898887542 333334566799999999999999999998877632221111 111
Q ss_pred CCcccccCCCCCCCCCcEEEecc
Q 003170 416 NAAMSQIDGARSVPAAPIHVDIR 438 (842)
Q Consensus 416 ~~Pmr~eD~~~svPSnVLwig~p 438 (842)
+.. ..++..|.-.+|...|
T Consensus 175 ---V~n-~K~~v~p~~~g~~~~~ 193 (376)
T KOG0125|consen 175 ---VHN-KKKKVLPYPNGWKLLP 193 (376)
T ss_pred ---hcc-CCcccCCCcccccccc
Confidence 111 1223477778887766
No 169
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=81.53 E-value=2.2 Score=45.87 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=47.5
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc-eeee---cCCCceeeEEecChhhHHHHHHH
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTD---LSCEGALLMEFRTPEEATTAMAH 396 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~d---l~~r~~afVEF~s~edAa~Am~~ 396 (842)
+.-..|||||+.=.+.+|+|..-|.+||-+-+. -|.| =+++.+.||.|...|.|.+|-+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC
Confidence 455689999999999999999999998666442 2222 24667899999999999999663
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=80.56 E-value=2.8 Score=39.50 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred EEecCCCCccCHHHHHHhccccCCcceEE-------------EecCCceEEEEecChHHHHHHHHHhcCC
Q 003170 257 LWLGSFGPEASEAHIRFQIDRFGPLEHFF-------------FFPIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 257 LwVGnL~~dvtE~dL~~~F~rfGpIesV~-------------~~~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
|-|-..++. ....+.++|++||.|.+.. .....+.--|.|.+..+|.+|++. ||+
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~ 76 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT 76 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE
T ss_pred EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe
Confidence 444455555 5677888999999998775 556889999999999999999764 443
No 171
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=80.17 E-value=2.4 Score=50.36 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.9
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhcccc-CCceeee---cCCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMVTD---LSCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~-g~~~~~d---l~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
+-.++|||-++++.+---+|-+-|.|||+. |---++- --.+.+-||...|.+||...|.||+..-
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE 471 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh
Confidence 458999999999999999999999999986 4322222 2346779999999999999999998654
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=79.43 E-value=2.5 Score=47.60 Aligned_cols=61 Identities=11% Similarity=0.247 Sum_probs=50.1
Q ss_pred CeEEecCCCCccCHHHH------HHhccccCCcceEEEec-------CCceE--EEEecChHHHHHHHHHhcCCcc
Q 003170 255 KQLWLGSFGPEASEAHI------RFQIDRFGPLEHFFFFP-------IKGFA--LVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL------~~~F~rfGpIesV~~~~-------~RGFA--FVeF~~i~DA~~A~~~L~G~~~ 315 (842)
+-+||-.|++-+..++. .+-|++||+|..+.|-+ --+-| |+.|...+||.+++...||..+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 45789999999888872 57899999999999843 12334 9999999999999999999854
No 173
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.79 E-value=14 Score=41.22 Aligned_cols=156 Identities=10% Similarity=0.162 Sum_probs=104.5
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEecCC-------------ceEEEEecChHHHHHHHHHhcCCc------
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIK-------------GFALVEYINIIDAIRAREYIRNHF------ 314 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~R-------------GFAFVeF~~i~DA~~A~~~L~G~~------ 314 (842)
+|.|-.-|+..+++=..+...|.+||+||+|+++... ---.+-|.....+.+=...+--+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999998765 566788888777766544322110
Q ss_pred c----eEEEEecc--------ccC-C------ccc--cccccccccceEEEccCCCchhHHHHHHHHhhcccc-CCcee-
Q 003170 315 S----WRVKFMDV--------GLG-T------KGV--INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYK-GPYMV- 371 (842)
Q Consensus 315 ~----~RIrF~r~--------~lG-s------rg~--~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~-g~~~~- 371 (842)
+ ..+.|-.. +-- + ... ++=+.-+..|-|.|-.=. ...+++++++-..|.+. +..++
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~-~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKD-PVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecC-ccchhHHHHHhhhhhccCCCceEE
Confidence 0 13444321 000 0 000 111122678888887764 44477788877676554 22111
Q ss_pred ------------eecCCCceeeEEecChhhHHHHHHHhhhccc----CCCCCCCC
Q 003170 372 ------------TDLSCEGALLMEFRTPEEATTAMAHLRQHRK----SRSNYLPP 410 (842)
Q Consensus 372 ------------~dl~~r~~afVEF~s~edAa~Am~~lrg~R~----erSsf~~r 410 (842)
..-++.|+|.+.|.+.-=|..++.+|+.+.. .+|.|..-
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~ 228 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSV 228 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEec
Confidence 1235789999999999999999999996654 38887743
No 174
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=78.74 E-value=4.7 Score=47.93 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred cCCccccccCCCCCeEEecCCCCccCHHHHHHhccc--cCCcceEEEecCCceEEEEecChHHHHHHHHHh-------cC
Q 003170 242 DEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDR--FGPLEHFFFFPIKGFALVEYINIIDAIRAREYI-------RN 312 (842)
Q Consensus 242 ~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~r--fGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L-------~G 312 (842)
|.+---+....+-|-+-+..|+....+++++.+|.- +=+..+.-|+-.-+. ||.|++..||-.|.++| +|
T Consensus 163 DekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 163 DEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred ccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcC
Confidence 444455667778888999999999999999999975 667777777766555 99999999999998877 57
Q ss_pred Ccce-EEE
Q 003170 313 HFSW-RVK 319 (842)
Q Consensus 313 ~~~~-RIr 319 (842)
+.|| ||+
T Consensus 242 KpImARIK 249 (684)
T KOG2591|consen 242 KPIMARIK 249 (684)
T ss_pred cchhhhhh
Confidence 7777 776
No 175
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=77.75 E-value=3.5 Score=48.23 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=70.8
Q ss_pred CCCCCCccccccccCCCCCCCCCcc--cccc--cceeeeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccCCc
Q 003170 206 FPGRSSSEGASNALLSPNHHLPVPY--ASTT--SQIVWYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFGPL 281 (842)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~--~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpI 281 (842)
||-++++|..+++++|=--+.=.-| |.+. .+.=|+++-....-. ...--|=+..|+-.+||+||.+.|+--=.+
T Consensus 53 ~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~--~~d~vVRLRGLPfscte~dI~~FFaGL~Iv 130 (510)
T KOG4211|consen 53 YVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSS--ANDGVVRLRGLPFSCTEEDIVEFFAGLEIV 130 (510)
T ss_pred EEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCC--CCCceEEecCCCccCcHHHHHHHhcCCccc
Confidence 9999999999999886222221112 2221 233455443332221 233467789999999999999999987777
Q ss_pred ceEEE------ecCCceEEEEecChHHHHHHHHHhc
Q 003170 282 EHFFF------FPIKGFALVEYINIIDAIRAREYIR 311 (842)
Q Consensus 282 esV~~------~~~RGFAFVeF~~i~DA~~A~~~L~ 311 (842)
.+..+ .++-|=|||.|+..++|++|+..-.
T Consensus 131 ~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 131 PDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred ccceeeeccCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 76332 2366899999999999999976543
No 176
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.09 E-value=4 Score=46.31 Aligned_cols=66 Identities=11% Similarity=-0.006 Sum_probs=53.2
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCcee-eecC---CCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMV-TDLS---CEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~-~dl~---~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
.+-+.|+|-.+-+.+++|+|+=.|.+||++--|-+ +|.. +=.+|||||++-|+.-+|-.-|.---|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 68899999999999999999999999999876533 3322 234699999999999888776665444
No 177
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=76.96 E-value=6.3 Score=36.97 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=40.6
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCc--eeeecCCCceeeEEecChhhHHHHHHHhhhc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPY--MVTDLSCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~--~~~dl~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..|||-|.|...+...|-.-++.+ .+.| .+..+ ..+.|.|.|.+.|.|.+|.+-|.|-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qL--sdNCGGkVl~v-~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQL--SDNCGGKVLSV-SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHH--HHTTT--EEE---TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH--hhccCCEEEEE-eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 369999999999988888888875 4333 34454 5788999999999999998877754
No 178
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=76.72 E-value=1.5e+02 Score=34.27 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=43.8
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeec------CCCceeeEEecChhhHHHHHHHhhhcc
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDL------SCEGALLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl------~~r~~afVEF~s~edAa~Am~~lrg~R 401 (842)
--.+||||+-=.+++|+|++-+...|+---..+|+| .++.+|+|-.-+-...-+.|+.|--+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 346899999999999999999999887532344444 356678887776554445566554443
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=72.57 E-value=6.2 Score=40.15 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=50.3
Q ss_pred hhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhhhcccC---CCCCCCCC
Q 003170 351 WAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLRQHRKS---RSNYLPPN 411 (842)
Q Consensus 351 ~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lrg~R~e---rSsf~~r~ 411 (842)
...|++-.-..++-.+|+|.-+.+..+..|.|-|+....|..|+...+..+.+ .|+|.+++
T Consensus 99 ~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqqrF 162 (166)
T PF15023_consen 99 QPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQRF 162 (166)
T ss_pred ChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCCCCceEEeeccccc
Confidence 55677777777777789987777899999999999999999999888875554 89998653
No 180
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=72.45 E-value=3.8 Score=43.63 Aligned_cols=65 Identities=17% Similarity=-0.013 Sum_probs=51.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc---eeeec-CCCceeeEEecChhhHHHHHHHhhhccc
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY---MVTDL-SCEGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~---~~~dl-~~r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
...+.+|||++--..+.+++..+|..-|-+..+ .-++. ..++++||||.+.+.+..|.. |++-.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 568899999999999999999999998887632 22222 357799999999999988877 665543
No 181
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=71.86 E-value=10 Score=31.66 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=35.2
Q ss_pred eEEEccCCCchhHHHHHHHHhhccccCCceeeecC-CCceeeEEecChhhHHHHH
Q 003170 341 HVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLS-CEGALLMEFRTPEEATTAM 394 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~-~r~~afVEF~s~edAa~Am 394 (842)
.|=|-|.+... .+++++.|..+ |++.-+.+. ..+.+||.|.+..+|..|+
T Consensus 3 wI~V~Gf~~~~-~~~vl~~F~~f---GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDL-AEEVLEHFASF---GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchH-HHHHHHHHHhc---CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 44455555443 58888888875 554444445 5778999999999999884
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=69.38 E-value=22 Score=33.34 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcceEEE
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSWRVK 319 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~RIr 319 (842)
..|+|-=..+..=-..||..+|+.||.|.==|+- -.-|||...+.+.|..|++.+.-...++|.
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~~~~~y~i~ 71 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLKKNSSYRIQ 71 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHTT-SSSEEE
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhccCCceEEE
Confidence 3455544477888899999999999999877774 367999999999999999999876666664
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=68.36 E-value=6.8 Score=43.69 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=35.8
Q ss_pred HHHHHHHHhhccccCCceeeecCC---Cce--eeEEecChhhHHHHHHHhhhcc
Q 003170 353 KDEILHESYKVVYKGPYMVTDLSC---EGA--LLMEFRTPEEATTAMAHLRQHR 401 (842)
Q Consensus 353 kEEi~~E~~k~g~~g~~~~~dl~~---r~~--afVEF~s~edAa~Am~~lrg~R 401 (842)
.+|+-+|+.|+|..|.+-|-.+.+ ..+ -||||+..++|+.|.+.|+|+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 456677889999988742222221 122 7999999999999999999764
No 184
>PHA01732 proline-rich protein
Probab=67.50 E-value=6.2 Score=36.97 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=8.3
Q ss_pred cccCcceeeEEEeee
Q 003170 702 CKSGVHYCTIYAQRE 716 (842)
Q Consensus 702 aKsG~~~C~~~~~~v 716 (842)
++||+---||-.+.+
T Consensus 60 ~a~gTasLrIpkqtg 74 (94)
T PHA01732 60 KAGGTASLRIPKQSG 74 (94)
T ss_pred hccCcceeEeecccc
Confidence 466666655554443
No 185
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=63.76 E-value=10 Score=42.86 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCCCCeEEecCCCCccCHHHHHHhccccCCcce--------EEEe------cCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 251 FSASKQLWLGSFGPEASEAHIRFQIDRFGPLEH--------FFFF------PIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIes--------V~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.+--.++||=.|...+++.+|.+.|..+|.|.- ++++ .+||=|.|.|+|.--|..|+...+|+..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 344456888899999999999999999999863 3333 48999999999999999999999998655
No 186
>PHA01732 proline-rich protein
Probab=62.60 E-value=10 Score=35.57 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=5.3
Q ss_pred cccccccCc
Q 003170 698 QGALCKSGV 706 (842)
Q Consensus 698 qG~laKsG~ 706 (842)
+|.+.+||.
T Consensus 76 ~g~~sagg~ 84 (94)
T PHA01732 76 QGSISAGGT 84 (94)
T ss_pred ccccccCCc
Confidence 456666664
No 187
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=62.50 E-value=43 Score=39.20 Aligned_cols=11 Identities=9% Similarity=0.259 Sum_probs=5.4
Q ss_pred HHHHHHhhccc
Q 003170 355 EILHESYKVVY 365 (842)
Q Consensus 355 Ei~~E~~k~g~ 365 (842)
||.+|++.|+.
T Consensus 54 ELf~da~~f~~ 64 (518)
T KOG1830|consen 54 ELFNDANNFNH 64 (518)
T ss_pred HHHHHhhhhhh
Confidence 44555555443
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=62.17 E-value=20 Score=41.02 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=47.4
Q ss_pred CeEEecCCCCccCHHHHHHhccccCC--cceEEEe------cCCceEEEEecChHHHHHHHHHhcCCc
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRFGP--LEHFFFF------PIKGFALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rfGp--IesV~~~------~~RGFAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
-.+|||||---+|.+||.++...-|- |-+++|+ .+||||+|-.....-.++-|+.|.-+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 35899999999999999999888774 3355554 389999999888777777777776653
No 189
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=61.97 E-value=3.7 Score=44.09 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=45.9
Q ss_pred cccccceEEEccCCCchhHHHHHHHHhhccccCC-c--eeeecCC--CceeeEEecChhhHHHHHHHhhhccc
Q 003170 335 AVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGP-Y--MVTDLSC--EGALLMEFRTPEEATTAMAHLRQHRK 402 (842)
Q Consensus 335 a~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~-~--~~~dl~~--r~~afVEF~s~edAa~Am~~lrg~R~ 402 (842)
|+..-++||||+..+.++ ||++.|+-+. -|| + .|.+..+ .++|||+|..--.-.-||.-++|-+.
T Consensus 5 aae~drtl~v~n~~~~v~-eelL~Elfiq--aGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l 74 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVS-EELLSELFIQ--AGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDL 74 (267)
T ss_pred CcchhhHHHHHhhhhhhh-HHHHHHHhhc--cCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchh
Confidence 346688999999999984 5666666554 244 1 1222233 33699999998888889999998886
No 190
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=58.24 E-value=24 Score=42.04 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=16.5
Q ss_pred hhHhhhhhccCCchhhhcccc
Q 003170 799 SIWARLMFILPYSQDICSMLS 819 (842)
Q Consensus 799 ~~~~rlL~llP~s~e~~~~L~ 819 (842)
+..+++|+..|+.+|..++=.
T Consensus 387 DGIEK~L~MmPt~eE~qkIe~ 407 (817)
T KOG1925|consen 387 DGIEKLLTMMPTEEERQKIEG 407 (817)
T ss_pred hhHHHHHHhCCCHHHHHHHHH
Confidence 467889999999988877543
No 191
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=56.90 E-value=53 Score=38.36 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=5.3
Q ss_pred hHHHHHHH
Q 003170 775 GFQDFVSY 782 (842)
Q Consensus 775 ~~qdFI~y 782 (842)
.|+.||.-
T Consensus 475 aY~~FMkE 482 (487)
T KOG4672|consen 475 AYNAFMKE 482 (487)
T ss_pred HHHHHHHH
Confidence 48888743
No 192
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.16 E-value=34 Score=38.93 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCccceeeccc
Q 003170 776 FQDFVSYLKQRECAGVIKIPA 796 (842)
Q Consensus 776 ~qdFI~yLkqk~rAgVik~~~ 796 (842)
.+|-|-||+..=|.|||.+..
T Consensus 315 ieD~i~~L~~~~r~G~i~l~~ 335 (365)
T KOG2391|consen 315 IEDAIYSLGKSLRDGVIDLDQ 335 (365)
T ss_pred HHHHHHHHHHHHhcCeeeHHH
Confidence 556666777766777776643
No 193
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=51.33 E-value=86 Score=36.74 Aligned_cols=14 Identities=7% Similarity=-0.118 Sum_probs=5.3
Q ss_pred cChHHHHHHHHHhc
Q 003170 298 INIIDAIRAREYIR 311 (842)
Q Consensus 298 ~~i~DA~~A~~~L~ 311 (842)
.|.+.-+.-++.|+
T Consensus 47 KDp~qi~~~m~kld 60 (487)
T KOG4672|consen 47 KDPDQITSKMEKLD 60 (487)
T ss_pred CCHHHHHHHHHhhc
Confidence 33333333333333
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.98 E-value=12 Score=42.17 Aligned_cols=60 Identities=8% Similarity=0.117 Sum_probs=46.7
Q ss_pred CeEEecCCCCccCHHHHH---HhccccCCcceEEEecCCc---------eEEEEecChHHHHHHHHHhcCCc
Q 003170 255 KQLWLGSFGPEASEAHIR---FQIDRFGPLEHFFFFPIKG---------FALVEYINIIDAIRAREYIRNHF 314 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~---~~F~rfGpIesV~~~~~RG---------FAFVeF~~i~DA~~A~~~L~G~~ 314 (842)
+-+||=.|++++..+++. +-|++||.|..|.+.+.++ -++|-|+..+||.+|+..-+|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~ 149 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV 149 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH
Confidence 456888888876555544 3588899999999876431 27999999999999999999863
No 195
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=47.36 E-value=16 Score=46.94 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=5.7
Q ss_pred ccCcceeeEEEee
Q 003170 703 KSGVHYCTIYAQR 715 (842)
Q Consensus 703 KsG~~~C~~~~~~ 715 (842)
.+|-+.-..+..+
T Consensus 51 ~~g~~~~~~r~S~ 63 (2365)
T COG5178 51 HSGNPIYSLRVSD 63 (2365)
T ss_pred hcCCcceeeeccc
Confidence 3455544444433
No 196
>PRK09752 adhesin; Provisional
Probab=45.78 E-value=22 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=16.0
Q ss_pred CCCCCCcccccccccccccccC
Q 003170 104 GNESNSRVNEESCDVSFADKFS 125 (842)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~ 125 (842)
|-+-+.-|..|++++.|+.++.
T Consensus 84 ~~~~~~~~~~~~~~t~F~nNta 105 (1250)
T PRK09752 84 GAEFTLSPENETGMTLFANNTV 105 (1250)
T ss_pred cccEEEecccCccceEeeccee
Confidence 5556777777788888887764
No 197
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.69 E-value=11 Score=46.76 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=54.3
Q ss_pred CCeEEecCCCCccCHHHHHHhccccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCC
Q 003170 254 SKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNH 313 (842)
Q Consensus 254 Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~ 313 (842)
-..|+|-|+....|+++|+.+|..+|...++++. .++|-|||.|.+..+|-.++-.+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhh
Confidence 4578999999999999999999999999999753 48999999999999999998888775
No 198
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.82 E-value=5.5 Score=44.08 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=38.9
Q ss_pred cCHHHHHHhccccCCcceEEEe-----c-----------CCce---------EEEEecChHHHHHHHHHhcCCcc
Q 003170 266 ASEAHIRFQIDRFGPLEHFFFF-----P-----------IKGF---------ALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 266 vtE~dL~~~F~rfGpIesV~~~-----~-----------~RGF---------AFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
-+|+-|+.+|+.||.|.+|-+- + -.|| |||.|..-.--..||.+|.|..+
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 4789999999999999999861 1 1244 45777777778889999999754
No 199
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.60 E-value=1.5e+02 Score=38.08 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=7.4
Q ss_pred ceEEEEecChHHHH
Q 003170 291 GFALVEYINIIDAI 304 (842)
Q Consensus 291 GFAFVeF~~i~DA~ 304 (842)
|-++.-|-+.++|-
T Consensus 627 Gv~L~iF~r~~~~p 640 (1080)
T KOG0566|consen 627 GVCLLLFIRPDHAP 640 (1080)
T ss_pred eeeEEEEEcccccc
Confidence 55555555555543
No 200
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=42.92 E-value=48 Score=36.05 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=50.7
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCC-----ceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCE-----GALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r-----~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
.-+-.|+|-|.+-.++.++|++=|..++ ...++...+++ .+|-|.|..-+||.+||+-+++-..+
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~--~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld 150 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFG--ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD 150 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhc--cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC
Confidence 3456799999999999999999998885 33334333333 56999999999999999999985543
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.00 E-value=16 Score=41.07 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=57.1
Q ss_pred cccccccccceEEEccCCCchhHHHHHHHHhhccccCCc-eeeecCCC---------ceeeEEecChhhHHHHHHHhhhc
Q 003170 331 INGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY-MVTDLSCE---------GALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 331 ~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~-~~~dl~~r---------~~afVEF~s~edAa~Am~~lrg~ 400 (842)
..|+.+...+-+||-+++.....|+++++-..||..|-+ .|....+. ..+||.|++-|||+.|+...+|-
T Consensus 69 ls~~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 69 LSGVRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred cccchhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 567777788899999999999999999999998866653 33333322 12899999999999999987776
Q ss_pred ccC
Q 003170 401 RKS 403 (842)
Q Consensus 401 R~e 403 (842)
..+
T Consensus 149 ~~d 151 (327)
T KOG2068|consen 149 VDD 151 (327)
T ss_pred Hhh
Confidence 643
No 202
>PF15449 Retinal: Retinal protein
Probab=41.94 E-value=5.6e+02 Score=33.80 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=14.3
Q ss_pred cccccccCcceeeEEEeee
Q 003170 698 QGALCKSGVHYCTIYAQRE 716 (842)
Q Consensus 698 qG~laKsG~~~C~~~~~~v 716 (842)
|.+-+|-.-+.|.|.|-.-
T Consensus 1132 ~~~saK~~~Nt~SIFCPAt 1150 (1287)
T PF15449_consen 1132 QAASAKVSGNTCSIFCPAT 1150 (1287)
T ss_pred ccccccccCCccceecccc
Confidence 4566788888999998653
No 203
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.42 E-value=28 Score=45.01 Aligned_cols=10 Identities=30% Similarity=0.125 Sum_probs=4.8
Q ss_pred cceeEecCCC
Q 003170 760 REVCRLVPSS 769 (842)
Q Consensus 760 r~v~~l~P~S 769 (842)
++||.+.+++
T Consensus 137 ~evkvlyh~~ 146 (2365)
T COG5178 137 SEVKVLYHCH 146 (2365)
T ss_pred heeeEEeecc
Confidence 4455554444
No 204
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=35.14 E-value=1.1e+02 Score=35.62 Aligned_cols=15 Identities=0% Similarity=-0.049 Sum_probs=8.8
Q ss_pred hHhhhhhccCCchhh
Q 003170 800 IWARLMFILPYSQDI 814 (842)
Q Consensus 800 ~~~rlL~llP~s~e~ 814 (842)
+.+.++|+.....+.
T Consensus 336 ~~~sm~~~~~~~~~~ 350 (409)
T KOG4590|consen 336 CAPSMLYHCMSDDEG 350 (409)
T ss_pred cccchhhcccccccc
Confidence 445566666666654
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=34.98 E-value=1.2e+02 Score=27.05 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=39.3
Q ss_pred ccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 265 EASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 265 dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.++-+|++..+.+|+-.+ |... .-|| ||-|.|..||++-.+..+|+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEec-CCEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 577889999999998643 3322 3466 99999999999999999998754
No 206
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=34.70 E-value=1.8e+02 Score=33.27 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=12.2
Q ss_pred cccccccccccCcceee
Q 003170 694 QYQWQGALCKSGVHYCT 710 (842)
Q Consensus 694 ~~~WqG~laKsG~~~C~ 710 (842)
.-.|-|.-..++.+.|+
T Consensus 187 rQf~Pg~~~a~~~~~gs 203 (407)
T PF04625_consen 187 RQFWPGMPPASPAPAGS 203 (407)
T ss_pred HHhCCCCCCCCCCCCCc
Confidence 55788888777777763
No 207
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=33.03 E-value=1.2e+02 Score=32.60 Aligned_cols=12 Identities=0% Similarity=0.056 Sum_probs=5.8
Q ss_pred cccccccccccC
Q 003170 694 QYQWQGALCKSG 705 (842)
Q Consensus 694 ~~~WqG~laKsG 705 (842)
++..-..|.+||
T Consensus 75 ~~~~~~~lg~G~ 86 (353)
T PLN00034 75 ELERVNRIGSGA 86 (353)
T ss_pred HHhhhhhccCCC
Confidence 344444555554
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.43 E-value=3.7e+02 Score=32.14 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=72.3
Q ss_pred ccCCCCCCCCCccccccccee-eeccCCccccccCCCCCeEEecCCCCccCHHHHHHhccccC-CcceEEEec----CCc
Q 003170 218 ALLSPNHHLPVPYASTTSQIV-WYFDEDPAAMDIFSASKQLWLGSFGPEASEAHIRFQIDRFG-PLEHFFFFP----IKG 291 (842)
Q Consensus 218 ~~~~~~~~~p~~~~g~~~~~v-~~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL~~~F~rfG-pIesV~~~~----~RG 291 (842)
+...+.|+++...++.+--|+ .|=+.+.-+--.++.+..|.|=-++...|-.||......|= -|.++++.| .|-
T Consensus 37 ~~~~~~~~sgnp~ve~t~GiiHLyk~n~~~s~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry 116 (493)
T KOG0804|consen 37 LPSQIKYSSGNPSVEETHGIIHLYKKNSHSSLKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY 116 (493)
T ss_pred cCCcccccCCCCceeeeceeEEEEecCcccccccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE
Confidence 344555666544444333333 34455555555666699999999999999999988776654 477888876 667
Q ss_pred eEEEEecChHHHHHHHHHhcCCcc
Q 003170 292 FALVEYINIIDAIRAREYIRNHFS 315 (842)
Q Consensus 292 FAFVeF~~i~DA~~A~~~L~G~~~ 315 (842)
-+++.|++-.||..=.+..||+..
T Consensus 117 mvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 117 MVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred EEEEEeccchhHHHHHHHcCCCcC
Confidence 789999999999999999999963
No 209
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.98 E-value=1.3e+03 Score=30.17 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=10.2
Q ss_pred eeeEEEeeeccccccc
Q 003170 708 YCTIYAQREESDICKY 723 (842)
Q Consensus 708 ~C~~~~~~v~~~~~k~ 723 (842)
-||+|+.+.+.|+|+.
T Consensus 291 r~T~Y~iP~T~Dl~~a 306 (1007)
T KOG1984|consen 291 RCTMYTIPCTNDLLKA 306 (1007)
T ss_pred eeecccCCccHhHHHh
Confidence 3677777766666654
No 210
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=31.36 E-value=1.7e+02 Score=34.32 Aligned_cols=14 Identities=7% Similarity=-0.083 Sum_probs=8.7
Q ss_pred ccccCcceeeEEEe
Q 003170 701 LCKSGVHYCTIYAQ 714 (842)
Q Consensus 701 laKsG~~~C~~~~~ 714 (842)
.+|++...|.....
T Consensus 266 ~~~~~~~~~k~~~~ 279 (409)
T KOG4590|consen 266 MAKRLARRRKTAPS 279 (409)
T ss_pred hhhccceecccccc
Confidence 56667777665544
No 211
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=30.71 E-value=3.7e+02 Score=29.94 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=6.7
Q ss_pred hhhccCCchhh
Q 003170 804 LMFILPYSQDI 814 (842)
Q Consensus 804 lL~llP~s~e~ 814 (842)
+.+|.++.+++
T Consensus 312 atklihpdedi 322 (341)
T KOG2893|consen 312 ATKLIHPDEDI 322 (341)
T ss_pred ceeeeCCcccc
Confidence 44667766654
No 212
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=30.65 E-value=1.1e+02 Score=31.09 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=37.7
Q ss_pred HHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHHhcCCcce
Q 003170 269 AHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREYIRNHFSW 316 (842)
Q Consensus 269 ~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L~G~~~~ 316 (842)
.+|-+.|..||.+.=|+|.. +--.|.|++-+-|.+|+ .|+|..++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEET
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEEC
Confidence 47888999999988888877 57799999999999996 58888776
No 213
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=30.41 E-value=1.1e+02 Score=36.83 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=45.4
Q ss_pred cCHHHHHHhc----cccCCcceEEEe--c---CCceEEEEecChHHHHHHHHHhc--CCcceEEEEecc
Q 003170 266 ASEAHIRFQI----DRFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIR--NHFSWRVKFMDV 323 (842)
Q Consensus 266 vtE~dL~~~F----~rfGpIesV~~~--~---~RGFAFVeF~~i~DA~~A~~~L~--G~~~~RIrF~r~ 323 (842)
++--||..+| +-||-|..+++. + .+.++++.|.+++||.+|+..+. |..+..+||+|.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~ 346 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLDE 346 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECH
Confidence 3445777775 579999988874 2 56788999999999999999976 445569999976
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=28.92 E-value=55 Score=36.95 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=40.3
Q ss_pred cCCCCccCHHHHHHhccccCCcceEEEecCCceEEEEecChHHHHHHHHH
Q 003170 260 GSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFALVEYINIIDAIRAREY 309 (842)
Q Consensus 260 GnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFAFVeF~~i~DA~~A~~~ 309 (842)
-..++. .-.-|..+|++||.|.+....+.-+|-.|-|-+.-||.+|+..
T Consensus 203 fGFppg-~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk 251 (350)
T KOG4285|consen 203 FGFPPG-QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK 251 (350)
T ss_pred eccCcc-chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh
Confidence 344444 3456778999999999999888889999999999999999764
No 215
>PRK15313 autotransport protein MisL; Provisional
Probab=28.15 E-value=91 Score=39.78 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=10.6
Q ss_pred CCCCeEEecCCCCccC
Q 003170 252 SASKQLWLGSFGPEAS 267 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvt 267 (842)
..+.+|+||+=-.=+|
T Consensus 181 ~~~~~i~~g~~~~i~t 196 (955)
T PRK15313 181 TGSANIYVGDDLYIKT 196 (955)
T ss_pred cccceEEEcCceEEEe
Confidence 4588899887544444
No 216
>PRK09752 adhesin; Provisional
Probab=28.14 E-value=61 Score=42.16 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=16.0
Q ss_pred eccCCccccccCCCCCeEEecCCCCccCHHHH
Q 003170 240 YFDEDPAAMDIFSASKQLWLGSFGPEASEAHI 271 (842)
Q Consensus 240 ~~~g~~~~~~v~s~Sr~LwVGnL~~dvtE~dL 271 (842)
|.....+..+|. ..++|=||+-+.+-..+-|
T Consensus 292 y~~~~~~~f~ia-~g~~l~ig~~~~~~~~ds~ 322 (1250)
T PRK09752 292 YLGLSEVTFDIA-DGKTLVIGNTENDGAVDSI 322 (1250)
T ss_pred EeecceeEEEec-CCCEEEEccccCcCccccc
Confidence 334333444432 3566777777666554444
No 217
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=28.03 E-value=33 Score=37.63 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHh-hccccCCceeeecCC---CceeeEEecChhhHHHHHHHhhhcccC
Q 003170 354 DEILHESY-KVVYKGPYMVTDLSC---EGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 354 EEi~~E~~-k~g~~g~~~~~dl~~---r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
|+++.|+. |+|=+....+-+=.. .+.+||.|..-|+|..|...|++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~ 136 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN 136 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc
Confidence 67777777 666555533333222 456999999999999999999987763
No 218
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.90 E-value=94 Score=36.47 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCCccccccccCCCCCCCCCcccccccceeeeccCCccccccCCCCCeEEecCCCCc-cCHHHHHHhcccc----CCcc
Q 003170 208 GRSSSEGASNALLSPNHHLPVPYASTTSQIVWYFDEDPAAMDIFSASKQLWLGSFGPE-ASEAHIRFQIDRF----GPLE 282 (842)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~~~~g~~~~~~v~s~Sr~LwVGnL~~d-vtE~dL~~~F~rf----GpIe 282 (842)
.+||+|.+.|.|+..++-.|. -..++++|-|=||.-+ |...||.-.|+.| |+|.
T Consensus 121 ~~ESeeE~~~EisE~ag~~pe---------------------~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~ 179 (622)
T COG5638 121 REESEEEKANEISEKAGAVPE---------------------EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLS 179 (622)
T ss_pred hhhhhhhhhhhhhhhccCccC---------------------CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccc
Confidence 468888888888766666663 1345788888888765 8889999999877 8899
Q ss_pred eEEEec
Q 003170 283 HFFFFP 288 (842)
Q Consensus 283 sV~~~~ 288 (842)
.|.+++
T Consensus 180 kV~iyp 185 (622)
T COG5638 180 KVKIYP 185 (622)
T ss_pred eeEech
Confidence 998754
No 219
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=1.5e+02 Score=35.17 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=8.3
Q ss_pred eeEEecChhhHHHH
Q 003170 380 LLMEFRTPEEATTA 393 (842)
Q Consensus 380 afVEF~s~edAa~A 393 (842)
-.+||..-|.-+.|
T Consensus 317 ~e~dfSDDEkEaea 330 (483)
T KOG2236|consen 317 REQDFSDDEKEAEA 330 (483)
T ss_pred hhhccchHHHHHHH
Confidence 56788766544443
No 220
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=1.5e+03 Score=30.07 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=9.5
Q ss_pred CCCchHHHHHHHHhhc
Q 003170 771 GDHKGFQDFVSYLKQR 786 (842)
Q Consensus 771 ~d~~~~qdFI~yLkqk 786 (842)
++...+++|..-+.++
T Consensus 946 ~~~~~i~~~~e~~~~r 961 (1049)
T KOG0307|consen 946 EELQIIETFLEELLQR 961 (1049)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3456677777665544
No 221
>PRK15313 autotransport protein MisL; Provisional
Probab=26.59 E-value=1e+02 Score=39.36 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=9.5
Q ss_pred CCCCCeEEecCCCCccCHH
Q 003170 251 FSASKQLWLGSFGPEASEA 269 (842)
Q Consensus 251 ~s~Sr~LwVGnL~~dvtE~ 269 (842)
.....++-||+=..=+|..
T Consensus 213 ~~~~~~i~~gd~~~i~t~g 231 (955)
T PRK15313 213 SRAKNTIVVGNRAHIVTTG 231 (955)
T ss_pred cccccceEecccceEEEec
Confidence 3345556666555444433
No 222
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=26.21 E-value=57 Score=34.45 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=50.4
Q ss_pred ceeEecCCCC--CCCchHHHHHHHHhhcCccceeeccchhhhHhhhhhccCCchhhhcccccCCCCCCcEEEEEecCC
Q 003170 761 EVCRLVPSSP--GDHKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILPYSQDICSMLSIAPNSSDCLVALVLPKE 836 (842)
Q Consensus 761 ~v~~l~P~S~--~d~~~~qdFI~yLkqk~rAgVik~~~~~~~~~rlL~llP~s~e~~~~L~v~~d~~ecLialVLP~e 836 (842)
+..+++|+.+ ++.+.|.-++..|.+++++||++.--....-.++.-|+|..++ ..+||+.+-||-.
T Consensus 110 ~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~~~~----------~~~gl~l~~LPfa 177 (272)
T cd00594 110 ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQEEE----------DPEGLVLVTLPFA 177 (272)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEeccccC----------CCCEEEEEccCCc
Confidence 6788899884 6688899999999999999988864333334577888888766 5578888777744
No 223
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=26.01 E-value=98 Score=34.38 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=32.4
Q ss_pred CCCCeEEecCCCCccCHHHHHHhccccCCcceEEEecCCceE
Q 003170 252 SASKQLWLGSFGPEASEAHIRFQIDRFGPLEHFFFFPIKGFA 293 (842)
Q Consensus 252 s~Sr~LwVGnL~~dvtE~dL~~~F~rfGpIesV~~~~~RGFA 293 (842)
..-+=+|||.+.++-+-.-|..++.+||- +|.+..+++|.
T Consensus 155 ~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~--~~~~~~P~~~~ 194 (305)
T PRK00856 155 EGLKVAIVGDIKHSRVARSNIQALTRLGA--EVRLIAPPTLL 194 (305)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEECCcccC
Confidence 44577999999866666777779999994 89999999986
No 224
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=25.73 E-value=2.2e+02 Score=25.16 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=39.7
Q ss_pred CeEEecCCCCccCHHHHHHhcccc----CCcceEEEecCCceEEEEecChHHHHHHHHHh
Q 003170 255 KQLWLGSFGPEASEAHIRFQIDRF----GPLEHFFFFPIKGFALVEYINIIDAIRAREYI 310 (842)
Q Consensus 255 r~LwVGnL~~dvtE~dL~~~F~rf----GpIesV~~~~~RGFAFVeF~~i~DA~~A~~~L 310 (842)
..|.|-++ .+.+.+|++.-|..| ++..==|+- -.-|=|-|.+.++|.+|+.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWId--DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWID--DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEec--CCcEEEEECCHHHHHHHHHcC
Confidence 35677776 458889999999999 654333442 244678899999999999876
No 225
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.90 E-value=1.2e+02 Score=34.42 Aligned_cols=55 Identities=16% Similarity=0.038 Sum_probs=40.3
Q ss_pred HHHHHhcc----ccCCcceEEEe-----cCCceEEEEecChHHHHHHHHHhcCC--cceEEEEecc
Q 003170 269 AHIRFQID----RFGPLEHFFFF-----PIKGFALVEYINIIDAIRAREYIRNH--FSWRVKFMDV 323 (842)
Q Consensus 269 ~dL~~~F~----rfGpIesV~~~-----~~RGFAFVeF~~i~DA~~A~~~L~G~--~~~RIrF~r~ 323 (842)
-||..+|- .+|-|..+++. +.+.+.++.|.++++|.+|+..+... .+..+|++|.
T Consensus 147 ~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~ 212 (413)
T TIGR00387 147 YDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDN 212 (413)
T ss_pred CChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCH
Confidence 34555553 48888888863 25567789999999999999888654 4458888864
No 226
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.64 E-value=7.8e+02 Score=31.91 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=14.2
Q ss_pred cccccccc-CcceeeEEEeeeccccc
Q 003170 697 WQGALCKS-GVHYCTIYAQREESDIC 721 (842)
Q Consensus 697 WqG~laKs-G~~~C~~~~~~v~~~~~ 721 (842)
.+++-++. =-|.-|.-|+-.|.+-|
T Consensus 260 ~r~~~~~~~~PPl~TTd~~~~DqGN~ 285 (1007)
T KOG1984|consen 260 FRSTDTRAQPPPLVTTDFFIQDQGNC 285 (1007)
T ss_pred hhcCCccCCCCCCcccceEEeccCCC
Confidence 44433333 34556666777777766
No 227
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=24.52 E-value=72 Score=37.50 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=43.8
Q ss_pred cccceEEEccCCCchhHHHHHHHHhhccccCCc----------eeeecCC-------CceeeEEecChhhHHHHHHHhh
Q 003170 337 GSCFHVYVGNIPNQWAKDEILHESYKVVYKGPY----------MVTDLSC-------EGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~----------~~~dl~~-------r~~afVEF~s~edAa~Am~~lr 398 (842)
.++++|-+=+++-.-.-|-|++.|-.+|-+--+ .++.+.. +-+|+|||+..+-|.-|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 478899999999888777777666655543111 1222222 5579999999999999988775
No 228
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=1.2e+02 Score=36.83 Aligned_cols=67 Identities=21% Similarity=0.102 Sum_probs=41.5
Q ss_pred cccceEEEccCCCch-hHHH-----HHHHHhhccccCCceeeec---CCCceeeEEecChhhHHHHHHHhhhcccC
Q 003170 337 GSCFHVYVGNIPNQW-AKDE-----ILHESYKVVYKGPYMVTDL---SCEGALLMEFRTPEEATTAMAHLRQHRKS 403 (842)
Q Consensus 337 ~~s~~LwVG~Iss~~-~kEE-----i~~E~~k~g~~g~~~~~dl---~~r~~afVEF~s~edAa~Am~~lrg~R~e 403 (842)
+.-..|.|.|||-.- .+-+ |-.-|.|+|++-...+..- -+.+++|+||.+..+|--|.+.|+|+|.|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 344567788887642 2222 2333444443311111100 13556999999999999999999999986
No 229
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.76 E-value=77 Score=37.41 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCccCHHHHHHhccccCCcceEEEe-------cCCceEEEEecCh-HHHHHHHHHhcCCcce------EEEEeccccCCc
Q 003170 263 GPEASEAHIRFQIDRFGPLEHFFFF-------PIKGFALVEYINI-IDAIRAREYIRNHFSW------RVKFMDVGLGTK 328 (842)
Q Consensus 263 ~~dvtE~dL~~~F~rfGpIesV~~~-------~~RGFAFVeF~~i-~DA~~A~~~L~G~~~~------RIrF~r~~lGsr 328 (842)
+..+.-+|+|.+.-++=.|-+..++ -.|.+|||-++.. -+|.+-++.|+..-+- ||+|.+.-.-|.
T Consensus 444 GEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~ 523 (542)
T COG1021 444 GEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTA 523 (542)
T ss_pred cchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCcceeecccCCCcc
Confidence 5678889999999999998887754 3899999999998 7888888888766332 999998865442
Q ss_pred cccccccccccceEEEccCCCchhHHH
Q 003170 329 GVINGVAVGSCFHVYVGNIPNQWAKDE 355 (842)
Q Consensus 329 g~~~Gva~~~s~~LwVG~Iss~~~kEE 355 (842)
||.|.++..++.
T Consensus 524 ---------------VGKIdKk~Lr~~ 535 (542)
T COG1021 524 ---------------VGKIDKKALRRR 535 (542)
T ss_pred ---------------cccccHHHHHHH
Confidence 677766654443
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=23.68 E-value=1.4e+02 Score=33.79 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=37.3
Q ss_pred eEEecCCCCccCHHHHHHhccccCCcc-eEEEecCCceEEEEecCh
Q 003170 256 QLWLGSFGPEASEAHIRFQIDRFGPLE-HFFFFPIKGFALVEYINI 300 (842)
Q Consensus 256 ~LwVGnL~~dvtE~dL~~~F~rfGpIe-sV~~~~~RGFAFVeF~~i 300 (842)
.+|||||+.|+.-.||..++.+-|-.- ++.-.-.+|-||..|-|.
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 399999999999999999998877554 444456889999999874
No 231
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=23.40 E-value=2.5e+02 Score=24.92 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=38.6
Q ss_pred eEEEccCCCchhHHHHHHHHhhc-cccCCceeeecCCCceeeEEecChhhHHHHHHHh
Q 003170 341 HVYVGNIPNQWAKDEILHESYKV-VYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHL 397 (842)
Q Consensus 341 ~LwVG~Iss~~~kEEi~~E~~k~-g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~l 397 (842)
.|+|=|+ ...+.++|.+=+..+ ...++.+|- --+...+=|-|.+.+.|.+|+.+|
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IE-WIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIE-WIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEE-EecCCcEEEEECCHHHHHHHHHcC
Confidence 4666666 447788888888776 112443333 345678889999999999999865
No 232
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=22.97 E-value=84 Score=36.04 Aligned_cols=25 Identities=8% Similarity=0.216 Sum_probs=21.8
Q ss_pred hhHhhhhhccCCchhhhcccccCCC
Q 003170 799 SIWARLMFILPYSQDICSMLSIAPN 823 (842)
Q Consensus 799 ~~~~rlL~llP~s~e~~~~L~v~~d 823 (842)
+.++.|+.++|+.+|+..+....++
T Consensus 114 e~l~~L~~~~Pt~eE~~~l~~~~~~ 138 (432)
T smart00498 114 DLLEQLLKYAPTKEELKKLREYKEE 138 (432)
T ss_pred HHHHHHHhhCcCHHHHHHHHHhccc
Confidence 5788999999999999999888644
No 233
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=22.77 E-value=2.1e+02 Score=27.16 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=41.0
Q ss_pred cceEEEccCCCchhHHHHHHHHhhccccCCceeeecCCCceeeEEecChhhHHHHHHHhh
Q 003170 339 CFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVTDLSCEGALLMEFRTPEEATTAMAHLR 398 (842)
Q Consensus 339 s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~dl~~r~~afVEF~s~edAa~Am~~lr 398 (842)
..||+-=..|+.|...+|.+=|.-+ |.+.|- .-++..|||-...-|.|..||..+.
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspf---G~I~Vs-Wi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPF---GQIYVS-WINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCC---CCEEEE-EECTTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHHHHhccC---CcEEEE-EEcCCcEEEEeecHHHHHHHHHHhc
Confidence 3466655599999999999988885 554443 3568999999999999999998876
No 234
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.19 E-value=1.9e+03 Score=29.15 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.8
Q ss_pred HHHHHHHHhhcCc
Q 003170 776 FQDFVSYLKQREC 788 (842)
Q Consensus 776 ~qdFI~yLkqk~r 788 (842)
+.+...+|+-+|.
T Consensus 1001 L~~la~~i~~~~y 1013 (1049)
T KOG0307|consen 1001 LHQLAQSIKNRDY 1013 (1049)
T ss_pred HHHHHHHHhhccH
Confidence 4444444444443
No 235
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=21.47 E-value=45 Score=33.91 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=46.2
Q ss_pred eeEecCCCCCC---CchHHHHHHHHhhcCccceeeccchhhhHhhhhhccCCchhhhcccccCCCCCCcEEEEEecCC
Q 003170 762 VCRLVPSSPGD---HKGFQDFVSYLKQRECAGVIKIPAVKSIWARLMFILPYSQDICSMLSIAPNSSDCLVALVLPKE 836 (842)
Q Consensus 762 v~~l~P~S~~d---~~~~qdFI~yLkqk~rAgVik~~~~~~~~~rlL~llP~s~e~~~~L~v~~d~~ecLialVLP~e 836 (842)
..+++|+.... ...|.-++.-+.++++++|++.--....-.++.-|+|..++. +..+||+.+.||=.
T Consensus 105 ~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~P~~~~~--------~~~~gl~~~~Lpf~ 174 (200)
T PF02735_consen 105 SYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALIPQIEES--------DTPEGLVLIRLPFA 174 (200)
T ss_dssp EEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEEEEE-CE--------EC-CEEEEEE---G
T ss_pred cEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEEEecccc--------CCCCeEEEEEcCCh
Confidence 45677777666 566888889999999999998744444456788899988876 34589998888843
No 236
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=21.40 E-value=1.1e+02 Score=35.91 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=41.4
Q ss_pred ceEEEccCCCchhHHHHHHHHhhccccCCcee----eec---CCCceeeEEecChhhHHHHHHHhhhc
Q 003170 340 FHVYVGNIPNQWAKDEILHESYKVVYKGPYMV----TDL---SCEGALLMEFRTPEEATTAMAHLRQH 400 (842)
Q Consensus 340 ~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~----~dl---~~r~~afVEF~s~edAa~Am~~lrg~ 400 (842)
+.|-|.||+++.++|||-.=|--+|+|.++.. -++ --...+||-|.+...+..| .||--.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtnt 74 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNT 74 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccc
Confidence 38999999999999999987777777654211 111 1134699999988866655 455433
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=21.39 E-value=1.2e+02 Score=27.16 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHhccccCCcceEEEe----------------cCCceEEEE
Q 003170 268 EAHIRFQIDRFGPLEHFFFF----------------PIKGFALVE 296 (842)
Q Consensus 268 E~dL~~~F~rfGpIesV~~~----------------~~RGFAFVe 296 (842)
.++||+.|+..|+|.-+.+- -+|-|.||+
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~eS~~~~~~GGvV~eDgR~y~F~Y 52 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPYESDEDRLTGGVVMEDGRHYTFVY 52 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEcccccCCCeEeccEEEeCCCEEEEEE
Confidence 46899999999999999862 267777775
No 238
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=2.1e+02 Score=29.62 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=39.7
Q ss_pred cCCCCCeEEecCCCCccCHHHHHHhcccc---CCcceEEEec---------------CCc-eEEEEecC
Q 003170 250 IFSASKQLWLGSFGPEASEAHIRFQIDRF---GPLEHFFFFP---------------IKG-FALVEYIN 299 (842)
Q Consensus 250 v~s~Sr~LwVGnL~~dvtE~dL~~~F~rf---GpIesV~~~~---------------~RG-FAFVeF~~ 299 (842)
|.+..-++|+-.++.+++|++.++..++= +.|..|++.+ +|. |-+|.|++
T Consensus 83 Vpkd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFet 151 (161)
T COG5353 83 VPKDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFET 151 (161)
T ss_pred ecCCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEecc
Confidence 55566799999999999999999988876 6677777643 444 88888885
No 239
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.57 E-value=2e+02 Score=33.98 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=42.5
Q ss_pred HHHHHHhcc----ccCCcceEEEe--c---CCceEEEEecChHHHHHHHHHhcCCc--ceEEEEeccc
Q 003170 268 EAHIRFQID----RFGPLEHFFFF--P---IKGFALVEYINIIDAIRAREYIRNHF--SWRVKFMDVG 324 (842)
Q Consensus 268 E~dL~~~F~----rfGpIesV~~~--~---~RGFAFVeF~~i~DA~~A~~~L~G~~--~~RIrF~r~~ 324 (842)
--||..+|- -+|-|..+++. + .+...++.|.++++|.+|++.|.... +..+|+++..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~p~~~el~d~~ 270 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNL 270 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeeCHH
Confidence 346666554 68999988863 2 44677889999999999999987544 4588988763
No 240
>PRK11425 PTS system N-acetylgalactosamine-specific transporter subunit IIB; Provisional
Probab=20.10 E-value=2.7e+02 Score=28.27 Aligned_cols=69 Identities=6% Similarity=-0.050 Sum_probs=40.6
Q ss_pred EEEEecChHHHHHHHHHhcCCcceEEEEeccccCCccccccccccccceEEEccCCCchhHHHHHHHHhhccccCCceee
Q 003170 293 ALVEYINIIDAIRAREYIRNHFSWRVKFMDVGLGTKGVINGVAVGSCFHVYVGNIPNQWAKDEILHESYKVVYKGPYMVT 372 (842)
Q Consensus 293 AFVeF~~i~DA~~A~~~L~G~~~~RIrF~r~~lGsrg~~~Gva~~~s~~LwVG~Iss~~~kEEi~~E~~k~g~~g~~~~~ 372 (842)
-||-|+++.||.++++ .|-.+.+|..+ |+...+.+.....+|.=...+-|.+.|+...|.. +.+.
T Consensus 79 v~il~k~~~d~~~l~~--~g~~i~~iNvG-----------~~~~~~g~~~i~~~v~l~~~e~~~lk~l~~~Gv~--v~~q 143 (157)
T PRK11425 79 ILLVCKTPADFLTLVK--GGVPVNRINVG-----------NMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVE--CFVQ 143 (157)
T ss_pred EEEEECCHHHHHHHHH--cCCCCCEEEEC-----------CcccCCCCEEEecceeeCHHHHHHHHHHHHcCCE--EEEE
Confidence 6999999999999987 23333344422 2333445555555554455666677777775332 3344
Q ss_pred ecCC
Q 003170 373 DLSC 376 (842)
Q Consensus 373 dl~~ 376 (842)
.+++
T Consensus 144 ~vP~ 147 (157)
T PRK11425 144 GVPT 147 (157)
T ss_pred ECcC
Confidence 4443
Done!